# FlyBase fasta files = dmel-all-miRNA-r5.39.fasta, dmel-all-miscRNA-r5.39.fasta, dmel-all-ncRNA-r5.39.fasta, dmel-all-pseudogene-r5.39.fasta, dmel-all-transcript-r5.39.fasta, dmel-all-tRNA-r5.39.fasta
TargetID	oSeq	oLen	strand	chr	start	end	Start..End	MatchedTranscripts	FBgn	GeneName	OligoGeneHits	Other
CG31112-RA	GGTTTTGGGAGCCGAACTTGCTCAGAACACGTGGTAGCGATAGGTAGCTCATGATCGAACCCAGCC	66	-	chr3R	20884977	20885043	20884977..20885043				0	no match
CG17446-RA	TCCGAAGGTGAACGATACGGATGTGTGTGGTTCGCCCTTAGTGAACAACGTCTTCAATCCCACGGG	66	-	chrX	9165381	9165447	9165381..9165447	CG17446-RA,CG17446-RB,	FBgn0030121,	CG17446,	1	.
CG13493-RA	CCCACGAAACGCCAAGCTAAACCCGTACATTCCAGTTCCAGCGAATGCGAAGATTTCAAGCCAGACGAA	69	-	chr2R	17752801	17752870	17752801..17752870	CG13493-RA,	FBgn0034667,	comr,	1	.
CG5245-RA	GCCATGAGGTCACTTTATCGAGTCCACGTGCGTTTGCATACAAGAGAGCGACAGTACAAGTGCGCCGAA	69	+	chr3R	8256330	8256399	8256330..8256399	CG5245-RA,	FBgn0038047,	CG5245,	1	.
CG4250-RA	TGTATCTCCACACCTATTGATGGGATCAGATTTGGCACGAATATTCACGAAATACAACTCTGGTTCAAA	69	+	chr2R	18551826	18551895	18551826..18551895	CG4250-RA,	FBgn0034761,	CG4250,	1	.
CG30104-RA	GGAGCACATAGATGGACCGTATCCAACGATGGTCAAGCAGAACAGTGGCAAGGAGGTTCCCGTTGT	66	+	chr2R	13379408	13379474	13379408..13379474	CG30104-RB,CG30104-RA,	FBgn0050104,	CG30104,	1	.
CG32207-RA	CGACTGATGCATTTCTCAATCACAGCCATTTCTAAATCAATCGTCAAATCTAAACTAACTGCAAATTTT	69	-	chr3L	19470480	19470549	19470480..19470549	CR32207-RB,	FBgn0052207,	CR32207,	1	.
CG1854-RA	CGGCTTAGCTCTACCAGGAGTGAGCATGACCAGTTCACCCGTCTACGAGGTTATCTACTTGGCCCAACT	69	-	chr2R	3121698	3121767	3121698..3121767	CG1854-RA,	FBgn0026389,	Or43a,	1	.
CG1344-RA	ATGAGCTGTGTGCCGATCAGGGTTGGGGTCATGATGAACAGGATGATAAGGACGATATTGTCTGGGGCG	69	+	chr2R	1543223	1543292	1543223..1543292	CG1344-RA,	FBgn0027507,	CG1344,	1	.
CG11928-RA	CGACTTCAACGAGGAGGAATTATGCAGCATCACCAAGGATTCGCAGGACATTGCCGTGCTTCTGGC	66	+	chr2L	4719874	4719940	4719874..4719940	CG34351-RC,	FBgn0085380,	CG34351,	1	.
CG5400-RA	GCGGTGTGTGCTTTTATGGCCTGTGACTCAGGTGTGGATTTGGGTCAATGTGATGCTCAACACGATGCT	69	-	chr3R	13272500	13272569	13272500..13272569	CG5400-RA,	FBgn0000564,	Eh,	1	.
CG14749-RA	TCCGCTGGCCCGAGACTATTGCATGCTACTTATGGCCAAGAAGTTTGTCAGTCAAACGGAGACTGCCAT	69	+	chr2R	4516904	4516973	4516904..4516973	CG14749-RA,	FBgn0033316,	CG14749,	1	.
CG2991-RA	AGGGCTTCACCATTCAGCATTGGTCCAAGACGGTTATATTGATCACCTTGATGTGCGTAACCGGTGCCA	69	+	chr2L	2867350	2867419	2867350..2867419	CG2991-RB,CG2991-RA,CG2991-RC,	FBgn0031474,	CG2991,	1	.
CG10659-RA	TTTCGGCATCTCGAAACTGCTCTACTCCCACATTACCAGTGTCGAATCTTCGATGAGGGGCAAAG	65	-	chr2L	20025342	20025407	20025342..20025407	CG10659-RA,	FBgn0032839,	CG10659,	1	.
CG32693-RA	GCTGTGGCTGGAACACTTTCTAACTGGCTACTTTCAGCTATGCGGACTGGTCTGTGGCTGGAGTG	65	+	chrX	9955664	9955729	9955664..9955729	CG32693-RA,	FBgn0052693,	Gr9a,	1	.
CG4201-RA	GCGGTCTCTGCGGAGATGACTATGAAGGATCTAATTGCGTTGATTGTCCTGGACACTGGAATGGACGAA	69	-	chr3R	11873565	11873634	11873565..11873634	CG4201-RB,	FBgn0024222,	ird5,	1	.
CG32668-RA	CTCTAATGCCTCCCGCTCTATCGGCCATATCGACTTCGCTGTGTCCCAGGAAATTGACGGGTCAG	65	-	chrX	11052494	11052559	11052494..11052559	CG32668-RA,	FBgn0052668,	CG32668,	1	.
CG4714-RA	AGGCGGTAGTCCGTGAACTACTGTACGACCTTTTCGAGGAGACGGCTAGTTTATCGGACATCCACAACA	69	-	chr2R	9140499	9140568	9140499..9140568	CG4714-RA,	FBgn0033819,	CG4714,	1	.
CG14375-RA	AGAAATATCCACAACGTACATTAAAAACCGGAAATAAGCCTCAAAAACAAGAGCAACAACATCAAGAGA	69	-	chr3R	9215304	9215373	9215304..9215373	CG14375-RA,CG14375-RB,CG14375-RC,	FBgn0038147,	CCHa2,	1	.
CG7766-RB	GGTGGCGTCATCTACGTGGAGCATCTGGTGCACAAGGCCAATCAGTTGTTCCTCGAGGATCAGCG	65	-	chrX	8988569	8988634	8988569..8988634	CG7766-RA,CG7766-RB,CG7766-RC,CG7766-RD,	FBgn0030087,	CG7766,	1	.
CG2983-RA	CCGGGAGTCGTGGCTAAAAACGAAGATGGCCTTGAAGTACCTTCATGATCATCACCTAAACGATGCCGA	69	+	chr2L	2848020	2848089	2848020..2848089	CG2983-RA,	FBgn0031472,	CG2983,	1	.
CG13565-RA	AGCTTCAGCATCCTCAACCAGCTCGTCTAGTGATACCTTCGACAGCGCGTGAATGTAAATGCCCATGGA	69	-	chr2R	19834574	19834643	19834574..19834643	CG13565-RA,	FBgn0034935,	CG13565,	1	.
CG2972-RA	TCTCTCGGGGATCGATCTGAAAGTGATCTCGCTCACCTACGAACTGGAAGCAGACAACGTGGGCAC	66	+	chrX	9977584	9977650	9977584..9977650	CG2972-RA,	FBgn0030177,	CG2972,	1	.
CG7452-RA	GCAGGTGGAACCGGATAGCGAGTCAACTGAGAGACTGGAGCTAAAAGAGAAGCCAGAATGACCCGCAG	68	+	chr3L	4404787	4404855	4404787..4404855	CG7452-RA,	FBgn0035540,	Syx17,	1	.
CG7055-RA	AGTTGTGGTCCCTAACTTATATATGAATCGATCCCTGGTGTTGTAACATAGCTGTCCCCTCCCGGAACT	69	+	chrX	9045732	9045801	9045732..9045801	CG7055-RA,	FBgn0030093,	dalao,	1	.
CG13876-RA	TCCGGAGACCAGACTTCCAGCTCACTTCATATTCAGAGCGAAGAGGATTATCCCATTCACACGATTGC	68	+	chr3L	206569	206637	206569..206637	CG13876-RA,	FBgn0035109,	CG13876,	1	.
CG14423-RA	TCACCGCCGTCTAAGGATCTAGGATTCAAGGTCAGGATCCAACGATCCGACACATTCCGGCAAGATAAT	69	+	chrX	2840468	2840537	2840468..2840537	CG14423-RA,	FBgn0029646,	CG14423,	1	.
CG11103-RA	GCAGCAGGAAAAGAAATACGGATGCCTGAAGTTCGGTGGTTCCACGTACGAAGAGGTGGAGCACG	65	+	chrX	13676845	13676910	13676845..13676910	CG11103-RB,	FBgn0030522,	CG11103,	1	.
CG17820-RA	GCACTCTGTCAACTGGCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGGTGG	68	-	chr3R	17709966	17710034	17709966..17710034	CG17820-RA,	FBgn0038914,	fit,	1	.
CR32894-RA	AGCTCGCTTTGATTTCTATGAAGAAAACTGTTCCATATCCAACGCAAAAAATTATCTTGCTGACT	65	+	chr2R	13587999	13588064	13587999..13588064	CR32894-RA,	FBgn0063383,	snoRNA:U29:54Ec,	1	.
CG12736-RA	GGCTTCAATCAGAACCTGAAGACAAGCATCAGCGACATCCAGATATTCCGGAAGAGCGTGCCTCAGGC	68	-	chr2R	3396606	3396674	3396606..3396674	CG12736-RA,	FBgn0033184,	CG12736,	1	.
CG31773-RA	ACGTGTGCCATCGTGGAGAGTATTCTTCGGTGTCATGGGGTGAAAACTGGTGTTCTCTCCTCGCC	65	-	chr2L	3913089	3913154	3913089..3913154	CG31773-RA,	FBgn0051773,	CG31773,	1	.
CG4238-RA	GCTGGAGCTGTACTTCGTGGAGGAGATGTACGACTCCAGTAGTGGACAGCTGAGCAAGACCATCGAACT	69	+	chr2L	2029171	2029240	2029171..2029240	CG4238-RD,CG4238-RE,CG4238-RF,	FBgn0031384,	CG4238,	1	.
CG11178-RA	TGAGCACCGAGGATCTGCGCTACATGGACTACATCATGAAGCATGTGCAATCGCCAAAGGAGGATG	66	+	chrX	13501973	13502039	13501973..13502039	CG11178-RA,CG11178-RB,	FBgn0030499,	CG11178,	1	.
CG5612-RA	GCTGCCCGGAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATTCTATCGGAGGA	69	-	chr3R	23451391	23451460	23451391..23451460	CG5612-RA,	FBgn0039529,	CG5612,	1	.
CG14864-RA	CGCCTCCAGAGATTTGCGTTCAAGAGTCCGATCTGACCGAAAATGATGAGCGAGCTGTGTTCCCGGAAA	69	-	chr3R	11092827	11092896	11092827..11092896	CG14864-RA,CG14864-RB,	FBgn0038311,	CG14864,	1	.
CG18577-RA	ACGGCTGATGACAGAGCGTTTAAACGAACCCATCAACATCTCCATTCGCATGGGACCTGCCTATGACTA	69	.	.	.	.	.	CG18577-RA,	FBgn0037870,	CG18577,	1	.
CG15357-RA	CCCAGGGCTGGACACTCTACCTCATCGCCGCCTGCTTCGCATTACTCCTGCTCATGATCATCTATATG	68	-	chr2L	1945406	1945474	1945406..1945474	CG15357-RA,	FBgn0040719,	CG15357,	1	.
CG31349-RA	GAGTTCCCCAATCGGTGACAGCTGTACCTCCATCGAAACCCAGTACACATCACAAGCCAGCTTGC	65	-	chr3R	4654859	4654924	4654859..4654924	CG43140-RA,	FBgn0262614,	pyd,	1	.
CG1017-RA	TGCAGAAGTACTATCATCGTGGTGCCTTCTACCTGGATGAGGAGAACGACGTCCTCAAGCGCGACTT	67	+	chr3L	1942424	1942491	1942424..1942491	CG1017-RA,	FBgn0035294,	Mfap1,	1	.
CG11560-RA	TGGTCTTGGGTCGTCTGGAGCGACTGAGCATTTCCACGGTCACATCCTTGACCACAAACCTGTAG	65	+	chr3L	12114094	12114159	12114094..12114159	CG11560-RA,	FBgn0036249,	CG11560,	1	.
CG30029-RA	GCTCGTGGTTAAGGTCATGGCAACTACGGACATGGCAACTACGGACATGGCAACTACGGACATGGTCAT	69	+	chr2R	7133818	7133887	7133818..7133887	CR30029-RA,	FBgn0050029,	CR30029,	1	.
CG14481-RA	GGAATCCGTGAGCCAGAATGAAGCCGGACATCTGCAGGTTAAAGGTGTGATTAACCAGCCCTTCGAGGA	69	+	chr2R	13572689	13572758	13572689..13572758	CG42561-RA,	FBgn0260763,	CG42561,	1	.
CG2750-RA	CGCTTGGAGGACATTAGCATGCCCTCTGGAGTCTCAAATCGAACCCAGGACAGTGAATGCGTTGAGG	67	+	chrX	12006174	12006241	12006174..12006241	CG2750-RB,	FBgn0030376,	CG2750,	1	.
CG1464-RA	CCTGTTTCTACTCACCGTGGGTCTAGGAACAGACTGGCGATTTGAGCAGAGAAGCACTGCGAAAGGACT	69	+	chr4	741522	741591	741522..741591	CG1464-RB,CG1464-RA,CG1464-RC,CG1464-RD,	FBgn0005558,	ey,	1	.
CG14637-RA	CCCCTGGTCGTCTAATGGATATGCTGGACAAGAAGATCCTTACGCTGGACATGTGCCGGTACTTGTGCA	69	+	chr3R	59796	59865	59796..59865	CG14637-RA,	FBgn0015331,	abs,	1	.
CG3040-RA	GGCAAGCTGACGCTACTCAAGCACCTCAATCTAAGCGGAAATCGACTGGTGGAACTCAACGAGGTGG	67	-	chrX	6866970	6867037	6866970..6867037	CG3040-RA,	FBgn0029925,	CG3040,	1	.
CG5227-RC	CCTGTGATAAAACGATTTCCTTGTGCCCTAATAAGTTTTTCCAATGATTTCCAAGTGTGTTCAGCGCGT	69	+	chrX	642270	642339	642270..642339	CG5227-RA,CG5227-RB,CG5227-RD,CG5227-RC,CG5227-RE,CG5227-RF,	FBgn0021764,	sdk,	1	.
CG3931-RA	TCTACCGTCAAATGAAAAATTAACATTTCAATGGGTTCGAAATTGGTGGATTTCAAAATTGCATCAG	67	-	chr2R	19442575	19442642	19442575..19442642	CG3931-RA,	FBgn0034879,	Rrp4,	1	.
CG3566-RB	GGGAACATCAATTTCCTCACACATTTGACACGAAATAAATTGTACAAATTGCTTAAATTACACAA	65	-	chrX	6169002	6169067	6169002..6169067	CG3566-RC,CG3566-RB,CG3566-RD,	FBgn0029854,	CG3566,	1	.
CG6539-RA	ACGCTCAATCATTGTGGTTGCAGACTTTCAACATGCAGTACCAATTCATTGCATCCCATGTGGCCAAGA	69	-	chr3L	10453001	10453070	10453001..10453070	CG6539-RA,	FBgn0011802,	Gem3,	1	.
CG14581-RA	CGCAGCCTGCCTTCAATCGAAACCGATATTCAAACGATCGCACGGCTTAATCAACTGAAGTTGGAGGAA	69	+	chrX	21126461	21126530	21126461..21126530				0	no match
CG10750-RA	GCTGGACGTATGTGCTAGTCGGAAAATATAATATTTTTCATGGAGCATAAATAAATAAATAAATGATTT	69	+	chr2L	19301521	19301590	19301521..19301590	CG10750-RA,	FBgn0032769,	CG10750,	1	.
CG12081-RA	TTGGAGCTCGAATAACACTTTCGGGAGAGATGACGAATGGAGGACCTGAGCGAACGAGGGAGAAGCC	67	+	chrX	8484496	8484563	8484496..8484563	CG12081-RA,	FBgn0030053,	CG12081,	1	.
CG3713-RA	GAGCACCGCATAATCAGAGGTGGGGATGTTTCTGGGCTTCTTGGTGGATCTGCTGTACTGCCGAC	65	-	chrX	741096	741161	741096..741161	CG3713-RA,	FBgn0040343,	CG3713,	1	.
CG13607-RA	CGTTTCTTTAGCGAGAGAGATTACACAGACTGATCAATAATGGAATATATAGAAATCTATATAGCATAT	69	-	chr3R	19940007	19940076	19940007..19940076	CG13607-RA,CG13607-RB,CG13607-RC,	FBgn0039151,	CG13607,	1	.
CG7485-RA	TGGTCGTGTATGCGTTCAGCGGAGATCTCAGTCTATGTACAGTTGGACCCCCAGTTGATGAACTTCCGA	69	+	chr3L	22057265	22057334	22057265..22057334	CG7485-RA,CG7485-RB,	FBgn0004514,	Oct-TyrR,	1	.
CG32296-RA	GACAGCTCCTCTGTGCAAACGCAAGACGGCAAGCATTAAGTCCGAACAAGTCAGCGATGTTCTGGACAT	69	-	chr3L	2720829	2720898	2720829..2720898	CG32296-RA,CG32296-RB,CG32296-RD,CG32296-RE,	FBgn0052296,	Mrtf,	1	.
CG14316-RA	GCCCGTTGGCATAACCTTTGCTCGATTCACCAACTGTCCAGATCTCACTGATGAACAGCTCTTGGACTT	69	+	chr3R	13978889	13978958	13978889..13978958	CG14316-RA,	FBgn0038567,	CG14316,	1	.
CG31465-RA	GGCTCAAAGGATTGTGGGAACCGGTCAAAATGCAGCCGATGGTGGATTGAGATATGCACCCAATCGC	67	+	chr3R	17708527	17708594	17708527..17708594	CG31465-RA,	FBgn0051465,	CG31465,	1	.
CG14591-RB	GGGCTTCAAACTCTCCGGACAGTCAATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCA	69	-	chr2R	1925576	1925645	1925576..1925645	CG14591-RA,CG14591-RB,CG14591-RC,CG14591-RD,	FBgn0033054,	CG14591,	1	.
CG9075-RB_01674-01910	CGGAACCCCTCTGTATCCATTTAGTTCTCTGTGTATCATCAATTTTAAAACTGCGTTGTCAACCAGCAA	69	+	chr2L	5985468	5985537	5985468..5985537	CG9075-RA,CG9075-RC,CG9075-RB,CG9075-RD,CG9075-RE,	FBgn0001942,	eIF-4a,	1	.
CG5691-RA	CGCCCTGCAATGGACCCTGAACTTCGAGCTCCTAAAGACCAGTCAGTTGTTTTACAACGAGTTTGCCAA	69	-	chr3L	1960308	1960377	1960308..1960377	CG42863-RB,	FBgn0262110,	CG42863,	1	.
CG14934-RA	GCCCCCAGTTTCCCTTCAACTTTGACTTCATCACCGAACTGAATGCCAATTCGACAGCTGCGGACTTTG	69	+	chr2L	11848185	11848254	11848185..11848254	CG14934-RA,	FBgn0032381,	Mal-B1,	1	.
CG3485-RA	GCCCCCCGAAATGAAAGTGTTGCACCTGATCATCAGCAAGGTGAGACTGACACCGAAATTGGCTTTGGA	69	-	chr2L	3172059	3172128	3172059..3172128	CG34406-RA,	FBgn0085435,	CG34406,	1	.
CG30386-RA	CCTGGCTATGTTGGTGTTGTAACCTTGTTGCTCTACCGCTTGTTGGATCCTAACCCCCGAGATTGGCC	68	+	chr2R	17187891	17187959	17187891..17187959				0	no match
CG18398-RA	TGCCCGGTCTACTCACATCAAGCTCTCATCATTCCCTCACCTGCAAAGTTTTCCTCTCTCTTCTGGGCT	69	+	chr2L	18970579	18970648	18970579..18970648	CG18398-RA,	FBgn0032728,	Tango6,	1	.
CG7571-RA	TCCAAATCCCAGCACCATATTCTACATGAAGCCCATGGATTGCGATTTGAATCCTTGTAAATCTCAACG	69	+	chr3L	17504400	17504469	17504400..17504469	CG7571-RA,CG7571-RC,	FBgn0036732,	Oatp74D,	1	.
CG32082-RA	GTTTGGCCGGAAACAAGAGCTACGGACCATGGTACGACTTCTGGGATCAGGAACAGCATGGCCAG	65	+	chr3L	11155857	11155922	11155857..11155922	CG32082-RA,CG32082-RC,	FBgn0052082,	CG32082,	1	.
CG14499-RA	CCACTGCAAATCTTCAAGACGCAGCTTTGTCTTAACACCACTGCTTTCTTCGAGGCCAAGGTACCCGCT	69	+	chr2R	14075722	14075791	14075722..14075791	CR14499-RA,	FBgn0034317,	CR14499,	1	.
CG10834-RA	GGCATAATTATTTTGGACCCGTTCGCTATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCAT	69	-	chr2L	22107118	22107187	22107118..22107187	CG10834-RA,	FBgn0032972,	CG10834,	1	.
CG14801-RB	GCCCGTGTGCGACATAATAGACTACAACACCCAGTATTCGGGCATTACGGAAACGGATCTGTGTTCCGG	69	+	chrX	1746093	1746162	1746093..1746162	CG14801-RB,CG14801-RD,CG14801-RC,CG14801-RA,CG42666-RE,CG42666-RF,	FBgn0261548,	CG42666,	1	.
CG14376-RA	TGGCTGGCTCAACGCGTATCAGGCTTCCAATTGCGGAATCTCAATGGATATTTCCCCACCTGCTTGAG	68	+	chr3R	9247966	9248034	9247966..9248034	CG14376-RA,	FBgn0038153,	Ir87a,	1	.
CG14926-RA	GGCTGCACTCAAGTCAAGCGAACACCCAAAACTATTTGCATGGATCCAGTGGAATGGGATCGCACCAGA	69	-	chr2L	11342933	11343002	11342933..11343002	CG14926-RA,	FBgn0032360,	CG14926,	1	.
CG3429-RA	ACTCGATGTCGATGTCGCATTTGGAGGCGCATGACCACTTTAGGAGTAAAAGGACGACACTGGGCA	66	-	chrX	6257850	6257916	6257850..6257916	CG3429-RA,	FBgn0003655,	swa,	1	.
CG32254-RA	GCATGCAACCAACTACCACCTAGCCTGGCTTCTTTCTCAAAAGCCCCCACCAAATGCTAAGGCGTATTT	69	-	chr3L	4051315	4051384	4051315..4051384				0	no match
CG32238-RA	GGTCGCACGTCGGTCGGTGCAAATCAATCCGTGACGAATGGCAACTCAAATAGTGGCGCAAATAGC	66	+	chr3L	4648785	4648851	4648785..4648851	CG32238-RA,	FBgn0052238,	CG32238,	1	.
CG17868-RB	TGCGATTTGGTTTGGTGCTAAGACAGTTGAGCTGCTTTCTTTAGGACAGATTGGTTCCGACTTGGCCTT	69	-	chr2L	15622485	15622554	15622485..15622554	CG17868-RB,	FBgn0028946,	Or35a,	1	.
CG14856-RA	AGTGTGGGCTTGAACTTGACAATGTGTGTTTTTTACGGCCTGGGAATGATATGTGCATCTTGGCAGGG	68	+	chr3R	10625540	10625608	10625540..10625608	CG14856-RA,	FBgn0038261,	CG14856,	1	.
CG3333-RA	GCTGTACGAAAACCACAAGGACGAGTCTATGCTGCGACGTGTGATCAAGCCGCTAGAAGGTCTGCTG	67	+	chr2R	20063611	20063678	20063611..20063678	CG3333-RA,CG3333-RB,CG3333-RC,CG3333-RD,CG3333-RE,CG3333-RF,	FBgn0259937,	Nop60B,	1	.
CG17807-RA	GGACTACTTGCTGTAGGTCGTCGGAAGGGACAAAACGTGTTTCGATGCGACTGTCTTGTGGTGCCC	66	-	chr2R	18522088	18522154	18522088..18522154	CG17807-RA,	FBgn0034748,	CG17807,	1	.
CG3644-RB	TCCGACTTTTCGATGTAACCCCGCCCTCAAGGAATCCTCAATTGAAAACGAAAACAAGCTGAGGCCACA	69	+	chr2R	8759118	8759187	8759118..8759187	CG3644-RA,	FBgn0000181,	bic,	1	.
CG31468-RA	TGCCTACAATCTGCCCAGCACCTTTGGGTTTAAGAACTGCGACAAGAGGATGCAGCGAAGTCCAC	65	-	chr3R	19525763	19525828	19525763..19525828	CG31468-RA,	FBgn0047351,	CG31468,	1	.
CG30058-RA	AGGCTCAGCGGACATATAGATCACTCAGACGACAACATTACCCATACGAAAATGATCCCGAGACACCAA	69	-	chr2R	9098083	9098152	9098083..9098152	CG30058-RA,CG34312-RA,CG34235-RB,	FBgn0050058,FBgn0085341,FBgn0085264,	CG30058,CG34312,CG34235,	3	.
CG14973-RA	GCGGCAAATCCTGGTGTGAACTCCCCCAAACACTCGGCTAATTCTAGTTCCATAAGCGATGCCATCGAC	69	+	chr3L	3507618	3507687	3507618..3507687	CG42324-RD,	FBgn0259224,	CG42324,	1	.
CG6969-RA	TGCCCATTTCCTCGAATCCGGCAGATGGCTGCAATCGTGTCCAGATGACTCGACTGGGTAAATACTGTT	69	+	chr3R	18522272	18522341	18522272..18522341	CG6969-RA,CG6969-RB,	FBgn0039005,	CG6969,	1	.
CG10742-RA	TACAACCGCACCTGAACATACATACTCTCGGAATCAGTACTCATTTTTTTGTGCACCACTCACGT	65	-	chrX	2512373	2512438	2512373..2512438	CG10742-RA,CG10742-RB,	FBgn0040334,	Tsp3A,	1	.
CG4725-RA	GCGGCCAGAACCAGACTGTCACAATATCGAGTGTCTCTGCCGGATTACCAAAGTTTGGATCTAACCGAT	69	-	chr3R	18585341	18585410	18585341..18585410	CG4725-RA,	FBgn0039022,	CG4725,	1	.
CG10904-RA	TCGAGGAGTCTGGAGGAGATCGAGATTCGGAGAAGGCTTGTCGATGGGAGCACTTCAAGACGTTGATGT	69	-	chr2R	19857174	19857243	19857174..19857243	CG10904-RA,	FBgn0034945,	CG10904,	1	.
CG10803-RA	TGTCCGCAATAAGTTCTACTAGACGGTGAGCTGCATTGCGAATATCGGACGACCCATTTCATCGCACAA	69	+	chrX	3382227	3382296	3382227..3382296	CG10803-RA,	FBgn0029666,	CG10803,	1	.
CG7399-RA	CCCGACCCTTTGGTGTTCGCTACAATGCCTATACTCAGAGTGTTGAGGTTCTCGACTCGAAGCCCCAG	68	+	chr3L	7756031	7756099	7756031..7756099	CG7399-RA,CG7399-RB,	FBgn0001208,	Hn,	1	.
CG14691-RB	GATGGTTTTACTGCTGATCATGACCTTTGGGAGACTTGGATCTGTAAGTGGCAATATGTTACTGCCGGT	69	-	chr3R	6579295	6579364	6579295..6579364	CG14691-RB,CG14691-RA,	FBgn0037829,	CG14691,	1	.
CG14963-RA	GCCCAGTTCTGGTCGAGATTACAGGGGTTGCGAGTCATGTATGAACGTTGGCTGACTACAGTGGAAACT	69	-	chr3L	3171947	3172016	3171947..3172016	CG14963-RA,	FBgn0035409,	CG14963,	1	.
CG11659-RA	AACTGCCCAGATTTCGAGACGTGCGATCTGTCGAGCCTACGGTGCTACATGTTTGGAGGATCTCG	65	-	chr3R	15601909	15601974	15601909..15601974	CG11659-RA,	FBgn0038731,	CG11659,	1	.
CG13503-RA	GAGTGAAGTACTGGATAGACAAGACGGTGTACTCCTTTAAGAAGATACTCCATATAAATCGCCAAGGGA	69	-	chr2R	17996408	17996477	17996408..17996477	CG13503-RB,CG13503-RA,CG13503-RD,CG13503-RC,CG13503-RE,CG13503-RG,	FBgn0243516,	Vrp1,	1	.
CG30359-RA	ATGCAGTGCCCCATGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGCGAAA	67	+	chr2R	4351184	4351251	4351184..4351251	CG30359-RA,CG30359-RB,	FBgn0050359,	Mal-A5,	1	.
CG4161-RA	ACGATGCATTTAGCAAGCTTTTGCGGATTAACCTGTGGGGAAATCACTTTGAAATGCAGATCGGCGCCT	69	+	chr2L	15434001	15434070	15434001..15434070	CG4161-RA,	FBgn0028892,	CG4161,	1	.
CG3158-RA	TCACCACGATCATTTGATAGTGGCCCACGAAATCGCGGAGAGTAGAAACGGGCAGACACTGACAGC	66	+	chr3R	11668890	11668956	11668890..11668956	CG3158-RA,	FBgn0003483,	spn-E,	1	.
CG7533-RC	AACCCCCGGATGGAAGTATAGAGTATTATCCCAATTTGTATGTATGGATGTGTGTACACCATCACCTTG	69	+	chr3L	11488779	11488848	11488779..11488848	CG7533-RC,	FBgn0036165,	chrb,	1	.
CG17525-RA	GACCAATTGATGCACTTCGAGTCGGGTGTCATCTTCGAGTCTGCCCTAAGGAGACTCACCCGTCC	65	+	chr2R	14291067	14291132	14291067..14291132	CG17525-RA,	FBgn0063496,	GstE4,	1	.
CG12045-RA	TACGGAGATGATGGTTCCTACGATCCCCGCTACAACGATCCCTCTTTCGGACAGAACCAGCAGAGC	66	+	chr3R	26694090	26694156	26694090..26694156	CG12045-RA,	FBgn0039805,	Cpr100A,	1	.
CG3395-RB	GGCGCCAATGCTTGTACCGACTCTCAACGTCTGTAGATTGCGCATGTGACTCCGTTCACACCAATCG	67	-	chr3L	9503404	9503471	9503404..9503471	CG3395-RB,	FBgn0010408,	RpS9,	1	.
CG31439-RA	CGGTCTGTCGTCCTCTAGTTCTGAGGCTCAGCTTAAGGTTTCGTGCTTGGGCAAACCTGACGGATT	66	-	chr3R	21223777	21223843	21223777..21223843	CG31439-RA,	FBgn0051439,	Muc96D,	1	.
CG17248-RC	CATGGGCGTGATTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGCGGGG	65	.	.	.	.	.	CG17248-RE,CG17248-RA,CG17248-RF,CG17248-RG,	FBgn0013342,	n-syb,	1	.
CG10936-RA	AGCGCTTCACCAACTCAATGCACGGTAGCAACAGTTCCAACATCTACGACAGTTGGCGATCCACC	65	-	chr2R	13493127	13493192	13493127..13493192	CG10936-RB,CG10936-RA,	FBgn0034253,	CG10936,	1	.
CG31657-RA	AACTGGAACCGCATTTTGCTCATGACATTCCCGTGATACCCATGGATGACCTGACGGGGAATCCG	65	+	chr2L	875832	875897	875832..875897	CG33526-RD,	FBgn0053526,	PNUTS,	1	.
CG14543-RA	CAGTTTCCGCAAATAGAGGCTGAATTGAGTAAACTTCCTGCTGGCAAGGAGTGGCTGCGTCCGGATGTT	69	+	chr3R	21882754	21882823	21882754..21882823	CG14543-RA,	FBgn0039404,	CG14543,	1	.
CG6486-RA	GCAGCTGGGATTGTACACTGAAATTGTGGGACTGCAACAGACAGAACTCCATCACCACATTTGTGGGCC	69	+	chr3L	8643141	8643210	8643141..8643210	CG6486-RA,CG6486-RB,	FBgn0035922,	CG6486,	1	.
CG1663-RA	CCGGCAATTTCGAGAGAATAGCACCTTGAAGAGTCACATCCGGAAAATTCACGACGGTAACAGTGCGC	68	+	chr2R	5725704	5725772	5725704..5725772	CG1663-RA,	FBgn0033449,	CG1663,	1	.
CG17268-RA	GATGGCTCTGCACGTCTCTTTCATACCGAACCATCCGGGATATTCCACGAGTACAAGGCGACCGC	65	-	chr3R	16574255	16574320	16574255..16574320	CG17268-RA,	FBgn0017557,	Pros28.1A,	1	.
CG4836-RC	GCTTCCAAGCAGTCGAGTTCGATAGCAACGCACTGTTCGGAGAGGTCCTTGAAGCCATCTACAGCAAGT	69	+	chr3R	15843321	15843390	15843321..15843390	CG4836-RA,CG4836-RB,CG4836-RC,CG4836-RD,CG4836-RE,	FBgn0038762,	CG4836,	1	.
CG13353-RA	ACGTTGGGGAGCTGATAACGCATTCGGATGACACCATTTTCATCAAGCAAGTGTCCCACAAATGGTGG	68	+	chr2R	9977959	9978027	9977959..9978027	CG42287-RA,	FBgn0259183,	CG42287,	1	.
CG32306-RA	AGCTAACTAGTTGTCTCATAGTAATCCCAATAATGAAAACAAACTGAACGAAACGAAAATTCCACAGAT	69	+	chr3L	2464448	2464517	2464448..2464517	CG42669-RL,CG42669-RM,CG42669-RK,CG32306-RE,CG32306-RF,CG32306-RC,CG32306-RA,CG42669-RP,CG42669-RQ,CG42669-RR,	FBgn0261551,	CG42669,	1	.
CG4658-RA	CGGCGACAAATCATCACGCGAAGTGCAATTGGACATCAAGAAGTGGCAAATCAAGGAGGCCGAACGG	67	+	chr2L	9959560	9959627	9959560..9959627	CG4658-RB,CG4658-RC,CG4658-RA,	FBgn0032170,	CG4658,	1	.
CG5388-RA	TCCTGCAGGTCAATCACTCGGTGGTAATGGTGCTGAGCTACCGGTTTGATTCCTATATGGCGATGGC	67	-	chr3R	18163156	18163223	18163156..18163223	CG5388-RA,	FBgn0038944,	CG5388,	1	.
CG6478-RA	GTCTGCGTTTCTAGGAAGGCTACATCTTGGACTCCATTAACTTAAGCAAATCTCGACTGAAGAACTCAT	69	-	chr3R	22448234	22448303	22448234..22448303	CG6478-RA,	FBgn0039436,	TwdlB,	1	.
CG5338-RB	CACAGTAAAGGAAATCGATCAGCACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAA	69	-	chr3R	19759037	19759106	19759037..19759106	CG5338-RB,	FBgn0039129,	RpS19b,	1	.
CG11337-RB	CAAAGTTCGAGAACGACGACACTAAGCACCTGCAGGACTACCGCATTCTCACCGACATCCTGGGC	65	-	chr3R	27228561	27228626	27228561..27228626	CG11337-RB,CG11337-RA,CG11337-RD,	FBgn0039846,	CG11337,	1	.
CG7915-RA	GAGTAGCGAACTCGCAGATGGAACGCAAAGTATGCAAAACCTGGCCATTCCAATGACCCCGCAGC	65	+	chr3L	8099671	8099736	8099671..8099736	CG43119-RD,CG43119-RE,CG43119-RF,CG43119-RG,CG43119-RH,CG43119-RI,	FBgn0262579,	Ect4,	1	.
CG17921-RA	GCCAGCCCAGTACATTTTGTTCAGTTTCAGTCTCAGTTCAGTTCGTGCAAGGCAATTTTCACAGGCAGC	69	-	chr2R	17590282	17590351	17590282..17590351	CG17921-RA,	FBgn0010228,	HmgZ,	1	.
CG31619-RB	ATTACGCTCATATCCATAACTTTAAGTCGAAACATATTGCTAATAAATAACGCCGCACTTAATAA	65	+	chr2L	21720210	21720275	21720210..21720275				0	no match
CG1088-RA	CATGCACCAACGACGATGAAGTTTTGCCAAGTAGCTAAGTTTGTTGACCTGACCATCAAGTGCAGCTTT	69	+	chr3R	1419935	1420004	1419935..1420004	CG1088-RA,CG1088-RB,	FBgn0015324,	Vha26,	1	.
CG10793-RA	TGGCCAGGATAATGCTTGTGAAATCGAACATGTCCATTTGGGTGGTGATGATGTTCTCTTCTCCTCCTT	69	-	chrX	3209765	3209834	3209765..3209834	CG10793-RA,	FBgn0029656,	CG10793,	1	.
CG6811-RA	TTCTAGACTGGCCCAAGGAAGAGCGTTCGAGGAACGTGACGCAACTGATACGCGAAAAACTGCCAGAG	68	+	chr3L	12135614	12135682	12135614..12135682	CG6811-RA,	FBgn0036257,	RhoGAP68F,	1	.
CG18317-RA	CGAGCGCAAATTCTTAGTTAACTAGCTTCTAAGTCAGATATGAAACGAACTCGATAGACTTAAGACGTT	69	-	chr2L	1716925	1716994	1716925..1716994	CG18317-RA,CG18317-RC,CG18317-RD,	FBgn0031359,	CG18317,	1	.
CG6978-RA	GGCCATCGATCTTCTATATCTTCGGGCTGTTCAGCACCATCTGGTGTATCATCTTTATTTGCCTGGTGC	69	+	chrX	4678888	4678957	4678888..4678957	CG6978-RA,	FBgn0029727,	CG6978,	1	.
CG11132-RA	CGCTTCATTGTGATGGCAGATCGTTGGAACCGTCAGCAGCATGGAACCAAAACTGTGGAGGAGCTC	66	+	chr2R	16532293	16532359	16532293..16532359	CG11132-RA,	FBgn0034537,	DMAP1,	1	.
CG32350-RA	TCTTGCAACCCTATCAAAAATGTATTTCGCATGTACCCCGTCCAATCAGGTCCCAGTTGAAGAAGAGCA	69	-	chr3L	23141973	23142042	23141973..23142042	CG32350-RA,	FBgn0052350,	CG32350,	1	.
CG17540-RB	ACCAAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGAATTGGAACCC	67	-	chr2L	22960009	22960076	22960009..22960076	CG17540-RA,CG17540-RC,CG17540-RB,	FBgn0086683,	Spf45,	1	.
CG33207-RB	CTATAGGCATCCGTACGGGGACTCCAGTTTTGGATCCGATTCGGGATACAGCCACCATACGCCTG	65	+	chr3R	11513330	11513395	11513330..11513395	CG33207-RB,	FBgn0053207,	pxb,	1	.
CG5730-RD	GTCGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCAGAACAAGTACGGCAAGAGCTTGGAGTCCTG	69	+	chr3R	16894665	16894734	16894665..16894734	CG5730-RD,CG5730-RA,CG5730-RB,CG5730-RC,	FBgn0000083,	AnnIX,	1	.
CG1168-RA	ATGTCTTGATGACGGATCTGCTGAATCGCATGGACAAAGACATGCAGGTGGGCTATTACGACGTG	65	+	chr3R	1202819	1202884	1202819..1202884	CG1168-RA,CG1168-RB,	FBgn0041707,	7B2,	1	.
CG4293-RB	GCCCACAGAGATCCACCAGACTTTCACCACCATATACGCTTTTCAGTATGCCGTCACCGAAAACGTGCG	69	-	chrX	422585	422654	422585..422654	CG4293-RB,CG4293-RA,CG4293-RC,CG4293-RD,	FBgn0024983,	CG4293,	1	.
CG31231-RA	AGTGCAAGGATGTTGCGGTCATGCAGTCGAACTACAAGAAGTCCATGATAGAGGAGACGTGCGTGCG	67	+	chr3R	14492946	14493013	14492946..14493013	CG31231-RA,	FBgn0051231,	CG31231,	1	.
CG17075-RA	GCCACGTCATCTGAGACCAGCGACTTATCTGCAGTACACCGAGCAATGTACTCTCTGCACATTCCGCC	68	-	chr2L	264950	265018	264950..265018	CG17075-RA,CG17075-RB,	FBgn0031239,	CG17075,	1	.
CG4753-RA	TTATAAACTCTGCAACAGTTTTGGAATATACGACCTATGGACTAATAACTCAACTGCACTGACCATAGA	69	-	chr3L	16372140	16372209	16372140..16372209	CG4753-RB,CG4753-RA,	FBgn0036622,	CG4753,	1	.
CG2932-RA	GCGCTGCTAAATATAGTCAGTGTTGGGGAATTCGATAGCACCTATGTGGATACTAGCTTTTCCGGTG	67	-	chrX	4665408	4665475	4665408..4665475	CG2932-RA,	FBgn0025679,	Bteb2,	1	.
CG7045-RA	ACCAGGTGCCTTCACTAAGCGTTTACTACATTTGTTAATTTATTGTTGTACTAAAATCCACAAGCTAAT	69	+	chr3R	18318011	18318080	18318011..18318080	CG7045-RA,	FBgn0038978,	CG7045,	1	.
CG31229-RA	TTTGTTTAGCGCCTCCGTTAATCCCAACATGGCCGATCCGTTCGCGAATGAGAAGAAGCAGACGG	65	+	chr3R	14494355	14494420	14494355..14494420	CG31229-RA,	FBgn0051229,	CG31229,	1	.
CG33075-RA	GCCCCATTCGAAATTGTTAAATTGTAGTGAAATAAAATTCTTGTTTTTCTTGGTTCGAAAACAAA	65	+	chrX	19509572	19509637	19509572..19509637	CG14208-RA,CG14208-RB,CG14209-RB,CG14209-RC,CG14209-RD,	FBgn0031038,FBgn0031039,	Tyler,Shawn,	2	.
CG12538-RA	CCCGCCGTCGTTTCTCAGACGTTGTTGTACAGAATTTGCATGTCCTGCCAGTCCGACGCTCTCAAAAC	68	-	chr3R	9349060	9349128	9349060..9349128	CG12538-RA,	FBgn0038157,	CG12538,	1	.
CG33114-RA	CAGCAACCCGAGTTAACGCCGGATCTGATTAGCACCGTGGATACTTTGGACACCTACTGCTCCGG	65	-	chr2L	11139074	11139139	11139074..11139139	CG33114-RB,CG33114-RC,CG33114-RE,	FBgn0010197,	Gyc32E,	1	.
CG32118-RA	TGATACAACTCGAGTGCAAAGAAAACAAAACACGAAACCCTAGTAGTCTTCTTGGTCTTGTGCCC	65	+	chr3L	13091363	13091428	13091363..13091428				0	no match
CG6937-RA	TGCGGCGATTTTTATTCATTTACTACTTTAATAATCAATTTTAGTGAATTGACACTAATTAAAATGCCG	69	+	chr3R	18410521	18410590	18410521..18410590	CG6937-RA,	FBgn0038989,	CG6937,	1	.
CG3534-RA	TGGCTGAAGACCTTGGCTACAAATTCGGACCCGAGACACAAATCCTTGTCACAGGAGGCGCATCTGTTA	69	+	chr3R	12824573	12824642	12824573..12824642	CG3534-RA,	FBgn0038463,	CG3534,	1	.
CG18482-RA	TGCTGTTTTCGTCTGGTTAAACAGGTACTACGGACTTCCAACTACACTTGTTAACATGCCTCCAGAGCA	69	-	chr2L	15391933	15392002	15391933..15392002				0	no match
CG10754-RA	TGGAACCGTGACACCAAGCAGTTCTTCCTTCAGTTCGCCTTCAAGTTCGAACCTAAGATCCTGCCGC	67	-	chr3L	12806343	12806410	12806343..12806410	CG10754-RA,	FBgn0036314,	CG10754,	1	.
CG11293-RA	CGTGAAGTGTTCACTGTACTTTGGGAGCGGAGGATAAGTCAAGACGTCAACAGAGGAAGCTGTACGA	67	+	chr2R	19574331	19574398	19574331..19574398	CG11293-RA,CG11293-RB,	FBgn0034889,	CG11293,	1	.
CG7622-RC	TGTTATTCCGCGAAAATAAGTCTGAATTGTAGTGCAATCACTTGCGAAGTGTGTTAAATCAAGCGCTGA	69	-	chrX	523339	523408	523339..523408	CG7622-RC,	FBgn0002579,	RpL36,	1	.
CG14744-RA	TCTTGGGAAGAGCAGGATGACATTGGGATTAAGGACACCACAAAGTACCGTCGGTCCAGAGACACGGG	68	-	chr2R	4595780	4595848	4595780..4595848	CG14744-RC,	FBgn0033324,	CG14744,	1	.
CG5603-RC	TGGATACAATATACCTGAAATTACGTGTGTTCCAGAATTAACACAGTGGCTCTCGGAAGAAGGCGCACG	69	-	chr2L	10296031	10296100	10296031..10296100	CG5603-RC,CG5603-RD,CG5603-RE,CG5603-RB,	FBgn0032210,	CYLD,	1	.
CG15064-RA	CGCCTCTGCAAACCGACTTTATTTTTTTTCCTGTTAATAAATAGTTAAGTAATAAAGATTTTTTTTGAA	69	+	chrX	18104707	18104776	18104707..18104776	CG15064-RA,	FBgn0030900,	Him,	1	.
CG30019-RA	TGCTGGCACCTAATCTTAGTGGGTTCAGTGCGAGTCTGGGAGGTGCGTCAAGAGGTGTTGTCAAACATT	69	+	chr2R	6771035	6771104	6771035..6771104	CG18003-RA,CG18003-RC,CG11919-RA,CG11919-RB,	FBgn0061356,FBgn0033564,	CG18003,CG11919,	2	.
CG7611-RA	ACGGGCAGCAAAGACTCCACTGTGATTATCTGGGATGTTGATCCGTACAAGCTGACCCTTAAGCACCGT	69	+	chr3L	21519614	21519683	21519614..21519683	CG7611-RE,CG7611-RG,CG7611-RB,CG7611-RH,CG7611-RC,CG7611-RD,CG7611-RA,CG7611-RI,CG7611-RJ,	FBgn0037094,	CG7611,	1	.
CG5864-RA	CATGGCCTATCCGGATAAGGTGAAAAAGAAGATCACCCGGGAACTGGTCACTACGATACTGGCCCGCA	68	+	chr3R	19784809	19784877	19784809..19784877	CG5864-RA,CG5864-RB,CG5864-RC,	FBgn0039132,	AP-1sigma,	1	.
CR31541-RA	CTCGGAGCGTCGTCTGGGAATGATCTGGGAAAACTAGGCACCCACAATTGGTTTACCGATGCCAC	65	+	chr3R	1094999	1095064	1094999..1095064	CR31541-RA,	FBgn0037309,	CR31541,	1	.
CR31356-RA	TTAGCTCAGTGGCAGAGCACTGGTCTTGTAAACCAGGGGCCGTGAGTTCAATTCTCACAAGAGGC	65	+	chr3R	8032302	8032367	8032302..8032367	CR31356-RA,	FBgn0051356,	tRNA:CR31356,	1	.
CG10911-RA	CAAGACCCAGAGGGCCTATGGAGAGAGCTACGGTCAGCTGTACGCGGATTTGGGTGATTGCATTG	65	-	chr2R	13940659	13940724	13940659..13940724	CG10911-RA,	FBgn0034295,	CG10911,	1	.
CG17429-RA	GTGCACCTAAGCGAGAATCAAGGACCAAGCCAAGAGTGTTGCACGTGAATTGTGCTCGCGAGGAG	65	+	chr3RHet	1675037	1675102	1675037..1675102				0	no match
CG32796-RA	TGTGACTAATACACAAAACCCAAGAGAGAAGCATCCTAAACTCGATTTAAGCTCATAGGCGGCAGT	66	-	chrX	2338248	2338314	2338248..2338314	CG32796-RB,CG32796-RA,CG32796-RD,CG32796-RE,CG32796-RF,	FBgn0040388,	boi,	1	.
CG4148-RA	CCTGCAAGCAGGACCTCGAGTTCCTGGACATAGACGATACGGAGGATAGGTGTTCCTTGGTAGAGGAGC	69	-	chr2L	15767789	15767858	15767789..15767858	CG4148-RA,	FBgn0001990,	wek,	1	.
CG10843-RA	ACTGCGGACCAAGAACCAGATTCACGTGAAGCTCGTGAGAAGAAAATGAGGCAGCTTTAACGGAATGGA	69	+	chr2R	5131787	5131856	5131787..5131856	CG10843-RA,	FBgn0033397,	Cyp4p3,	1	.
CG6382-RA	CCGGTTTTGTTCTCTGCGATGCAGCCAATCCCATCAAGACGGGAAAAATCTTTGATGCTCAGGTCGTAA	69	+	chr2L	12439078	12439147	12439078..12439147	CG6382-RA,	FBgn0020443,	Elf,	1	.
CG2943-RA	GGCGATCGATCGGTGCTGTACAAGTACATCAACCCTAATCTAGTGGCTTTCGTCACACAGGCACCGGAT	69	-	chr3R	3730138	3730207	3730138..3730207	CG2943-RA,	FBgn0037530,	CG2943,	1	.
CG13577-RA	TGGCCCATCTAAGCGGTCTAAATAGCAAGACTAAGCACACGAGGCTGATGAGTACTTCCAAGCGCTGCA	69	-	chr2R	20155865	20155934	20155865..20155934	CG13577-RB,	FBgn0034998,	CG13577,	1	.
CG4797-RA	CCCAATGGGCCACTCCGACAGGGAATCTTCAAATGTTAGGTTACCAATTCAAATTGTGATCGCTATGCT	69	-	chr2R	19699765	19699834	19699765..19699834	CG4797-RB,CG4797-RA,	FBgn0034909,	CG4797,	1	.
CG6428-RA	CCGAACCATACATACCTCGTTCCTTGTTCCTGCAGCATGAAGAAAAAAACAAACACTGGAGGCTAGGGT	69	-	chrX	3859774	3859843	3859774..3859843	CG6428-RA,	FBgn0029689,	CG6428,	1	.
CG17991-RA	TCAATGATGTGCCTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCGCCAATGACCGAA	69	+	chr3R	23067626	23067695	23067626..23067695	CG17991-RA,	FBgn0039498,	CG17991,	1	.
CG18549-RA	GTGCAGCATGTTCATTGGGAATCTGTTCGTGTACTATCAGTTCCAGGACAAGACCCGCATCGACAA	66	+	chr3R	8280777	8280843	8280777..8280843	CG18549-RA,	FBgn0038053,	CG18549,	1	.
CG3221-RA	GCCACGCAGTGTCTTATTGACCAGTTGGATCTTGGCAAGATTCACTGCCTCAGTTTAACGGACATGGCG	69	-	chr2R	16880826	16880895	16880826..16880895	CG3221-RB,	FBgn0034569,	dgt3,	1	.
CG32836-RA	CACAAGGAAGGCAGTCAAATGGAGGAGGCTCTAGCAGGCGCTCATACCACGGATCAAGCGGCACC	65	+	chr2R	20774943	20775008	20774943..20775008	CG34413-RK,CG34413-RJ,	FBgn0085442,	NKAIN,	1	.
CG1488-RA	AGCGAAACCATTTTAATATTAAGCCATACCAAAATTATAAATATTTCATTTTGACGTCCTTACTTTGCG	69	-	chrX	11923559	11923628	11923559..11923628	CG1488-RA,CG1488-RB,	FBgn0030367,	Cyp311a1,	1	.
CG2225-RC	CCTGGAGTATCGACTCGCAATACCGCAAGAAATCGCCAAAGCTATTTGGTCATTATAGCAGCGGTGGC	68	-	chr2L	21668495	21668563	21668495..21668563	CG2225-RE,CG2225-RB,CG2225-RA,CG2225-RF,CG2225-RC,CG2225-RG,	FBgn0032957,	CG2225,	1	.
CG3461-RA	GCTGCAAGGGCGGATATTAGTAAGCTAACTCTCACCGAAGTTTTGCGCAAGGATATGAAGGTCTTGCAA	69	+	chrX	2076108	2076177	2076108..2076177	CG3461-RA,	FBgn0003116,	pn,	1	.
CG3695-RA	CCGCCCAACTGGAGTGTTAGTGAGCCGTACAAGGTGTATTTGCAAAGCCAAGACTCGCTGTGGAC	65	+	chr2R	18780263	18780328	18780263..18780328	CG3695-RA,CG3695-RB,CG3700-RB,	FBgn0034795,FBgn0034796,	MED23,CG3700,	2	.
CG7015-RA	GGGTCAGGAGGTGGAGTACACTCTTGCTCGTAATGGGAATACATCCGTTTCTGGAAACTGTCTGCCTGC	69	-	chr3L	8428331	8428400	8428331..8428400	CG7015-RA,CG7015-RB,	FBgn0035895,	Unr,	1	.
CG2102-RA	ACGCGCTTTAAGCAGGTTTAGGTGGGTTTTTTTGTGGGTTCAGGCAGATCCAGGACAAGGCATCCTTC	68	-	chr3R	1539134	1539202	1539134..1539202	CG2102-RA,	FBgn0004878,	cas,	1	.
CG11079-RC	CGTCCGTTTGCACAGTGTAATTACGGAAAACTAACTTTTGGCTTACATACAAAGTGGGAAGTAAA	65	+	chr2R	19247711	19247776	19247711..19247776	CG34424-RA,	FBgn0085453,	CG34424,	1	.
CG31049-RA	AGGAGGAAGAACAGCAAGTACGCACGCTCAATGCACGAGTATCTGTACAGCGATGACCCTGGACA	65	+	chr3R	24720458	24720523	24720458..24720523	CG42320-RL,	FBgn0259220,	Doa,	1	.
CG6976-RD	TCCTGGCACCATTGATGTGGAGTCCTCCAAGCAAATGGTGGATGACGTGTTCCGCTTCCTAAACGATG	68	+	chr2L	7683673	7683741	7683673..7683741	CG6976-RB,CG6976-RC,CG6976-RA,CG6976-RD,	FBgn0040299,	Myo28B1,	1	.
CG13813-RA	CGCCGTTACCCGAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAACCAATGG	68	+	chr3L	20224842	20224910	20224842..20224910	CG13813-RA,	FBgn0036956,	CG13813,	1	.
CG13434-RA	GCAATGCCAATCGCGAGCGACTCCAACATGTCCATGACAAGCGCCTGAAATTGACTGTCCAAATGGAG	68	-	chr2R	16473830	16473898	16473830..16473898	CG13434-RA,	FBgn0034523,	Nnf1a,	1	.
CG41117-RA	AACCGTCAGAACAACCCCATCGTATGCTTCAGTGACCTCTTCGAACCGATTTGTGTTGCGTCCAGCG	67	-	chr2L	22941670	22941737	22941670..22941737				0	no match
CG4314-RA	ACACGGGTCAGGATGTCCTGGACAAGTACAGCTTCAACGAGAGCAATGTCTATCGGAATTTACTGGCCA	69	+	chr3L	16493363	16493432	16493363..16493432	CG4314-RA,	FBgn0003515,	st,	1	.
CG17778-RA	CCTCCCTGGCGAATAGGTGCGGTAAATGTGTCAATGGGGACGCAAATGTAGGGACTAAATTGGCACCAA	69	+	chrX	389857	389926	389857..389926	CG17778-RA,	FBgn0023534,	CG17778,	1	.
CG11213-RA	TGAGCCCGTGTTCGTCAATGTGGTCAAGCCCCCAGCAGAGAAGTACTTTGTCAACGAGAACAAGC	65	+	chrX	8376693	8376758	8376693..8376758	CG11213-RA,CG11213-RB,	FBgn0000360,	Cp38,	1	.
CG32663-RA	TGAGCAGAGTCCCAAGTTGATGGATCGCTTCCGACATGGTCACTTGGATTCGGATTATGGCCACGG	66	+	chrX	11720904	11720970	11720904..11720970	CG43154-RB,CG43154-RC,CG43154-RD,CG43154-RE,	FBgn0262684,	CG43154,	1	.
CG1785-RA	ATTTTCGCGACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGTCGCGAACTGGCACTG	65	+	chrX	8609666	8609731	8609666..8609731	CG1785-RA,	FBgn0030061,	CG1785,	1	.
CG17689-RA	GAAAACCATCGTTCACTCTCCCGCCACATCTTCGATACACTCGCCCATGTCTAGTCCGCATCCGC	65	+	chr3L	13501037	13501102	13501037..13501102	CG17689-RA,CG17689-RC,	FBgn0036374,	Spt20,	1	.
CG3119-RB	TAGAGTTTATCTGACGGATTGATTATTCCTAATGCATCATAAATGTTTAATGATTTGTGATTGAT	65	-	chr2L	2836098	2836163	2836098..2836163	CG3119-RB,	FBgn0031466,	CG3119,	1	.
CG14307-RA	ACGCTCGAGCGGACGGATAGTCGCGATGATCTATTGCAGCTGGATTATAGCAACAAGGATAACAACAAT	69	-	chr3R	14260241	14260310	14260241..14260310	CG14307-RI,CG14307-RJ,CG14307-RK,CG14307-RL,CG14307-RM,CG14307-RH,CG14307-RB,CG14307-RC,CG14307-RE,CG14307-RF,CG14307-RG,CG14307-RA,CG14307-RD,CG14307-RN,	FBgn0004652,	fru,	1	.
CG1792-RA	CGCGGAATTGATCGAATCCTTCGCAGTTGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGA	69	+	chr3R	27442433	27442502	27442433..27442502	CG1792-RA,	FBgn0039860,	CG1792,	1	.
CG3609-RA	CAAGGATGTGGAGGTCAACTTTGGCTTCCCTATGCCTCATGTCGACCGCTTGCAGAAACGCGAAC	65	-	chr2L	2373065	2373187	2373065..2373076,2373133..2373187	CG3609-RA,CG3609-RB,	FBgn0031418,	CG3609,	1	.
CG5354-RA	ACCTCCGGATATTACTTGCGTTGCATTTGGTGTCGTTCGGAACGTTTCAGGGATTCCATACGCCTGCAG	69	-	chr2L	10421985	10422054	10421985..10422054	CG5354-RA,	FBgn0005683,	pie,	1	.
CG17826-RA	ATTGGCCCGATAATGTTAAGTGCTAAGTGGTTTCAATAAACAATATTTAAAGCAGAGTATTAAAC	65	+	chr3L	11945260	11945325	11945260..11945325	CG17826-RA,	FBgn0036227,	CG17826,	1	.
CG18331-RA	TCTCCGGACATTCGCATTCGATTGGGCCGAGAACAGTCAGGAAACGATGCTCAGTCCCAAAACTCGAAT	69	-	chr3L	11604022	11604091	11604022..11604091	CG18331-RA,	FBgn0036181,	Muc68Ca,	1	.
CG13437-RA	GAGCGTACGATCGAGCGGACATATCCCACGGATGCGGTGATAAATCCTGCCTATATGCACGACGAGGAC	69	+	chr2R	16549698	16549767	16549698..16549767	CG13437-RA,	FBgn0034541,	CG13437,	1	.
CG5706-RA	GCCCATCATCAACGGTGATCATTCCAAGATTACGCTGAAGACCAAGAACGTATTCATCGAGTGCACGGC	69	-	chr3R	20077302	20077371	20077302..20077371	CG5706-RA,	FBgn0039175,	CG5706,	1	.
CG31315-RA	GCCCCATTTTGCAACTCAATTCCAACATACATTTGCATGTCAGGACACCTAATCACAAACGGATA	65	+	chr3R	11581021	11581086	11581021..11581086				0	no match
CG9757-RA	ACTTTGCCGGTGATTAGTAGCAGAAGTTTCCTCGAAAATGCGCACATTTGTTTGCCTTGCCCTGG	65	-	chr3R	9438071	9438136	9438071..9438136	CG9757-RA,	FBgn0003060,	CG9757,	1	.
CG3770-RA	GTGCGTGCCCAGACAAAGTAAGAGCGCTTAGAGTCTATTATCTATCCGGCAAGTGCTGACGCGTTGC	67	+	chr2R	20833160	20833227	20833160..20833227	CG3770-RA,	FBgn0035085,	CG3770,	1	.
CG6921-RB	CGTGGGCAACACGGTCATCTTCCTTTACCTGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAA	69	+	chr3R	18381589	18381658	18381589..18381658	CG6921-RB,CG6921-RA,CG6921-RC,	FBgn0260942,	bond,	1	.
CG18496-RA	CAACATATCCAGCTGCTCCACGCTAGACATTGTCAACAAAGTGAGTAATGATGCCCGCACTGAGAGAAA	69	-	chr3R	11192839	11192908	11192839..11192908				0	no match
CG4207-RA	TCCGCGCGACAAGATGATCAAGGTGCGTCTCAAGGAGCTCATCGACAAACGCAAGAAGTTCCTCAAGTA	69	+	chr2R	18525867	18525936	18525867..18525936	CG4207-RA,	FBgn0026261,	bonsai,	1	.
CG32364-RA	TTCGGGAAATTCTCGCGGCTACGCCTACTTGCAATATATCAATGTGGACCTCAAGGAATCGGCAATGCA	69	-	chr3L	8203415	8203484	8203415..8203484	CG32364-RA,	FBgn0052364,	CG32364,	1	.
CG3331-RA	TGACTACTCGCAGGTTCCTGAGGATCTAAAGCTAACGGCACGGGATCTCTTCGAGACAGTGGGCG	65	-	chr3R	17056824	17056889	17056824..17056889	CG3331-RA,	FBgn0000527,	e,	1	.
CG5302-RA	TGCTGAGATCACTTCCCATCCCTGGATGGCCTATCTGTACAACGAGTTTCATTATTTCTGCGCTGGCAC	69	+	chr3R	11461329	11461398	11461329..11461398	CG43335-RA,	FBgn0263040,	CG43335,	1	.
CG1783-RA	ACGGTGAAAGTGCTGAGGAAATACCCATGGTATGGAAGGTTAAAAGGCGACCAGATGGAACGCGGTACA	69	+	chr4	689810	689879	689810..689879	CG1783-RA,	FBgn0024728,	Slip1,	1	.
CG8043-RA	CTTCGGAGGCTGTACCCAATCCACATCCAGACTTATTTGTGTCTCCCGACCCGAGGCTGCATGTC	65	+	chr3R	4503286	4503351	4503286..4503351	CG8043-RA,	FBgn0037610,	CG8043,	1	.
CG4759-RA	ACTGACCGAAGTGGATCCTGTGCCTTCTTATTAAGTGTGCAAGTGGGACAAACGTGCCTATGGTGATGA	69	-	chr3R	21509667	21509736	21509667..21509736	CG4759-RA,	FBgn0039359,	RpL27,	1	.
CG10211-RA	GCTGCCTTCCGTATCGGTCACTCTCTGCTACGTCCCCATATTCCTCGTCTAAGTGTCCAGCACCAG	66	+	chr2L	18530378	18530444	18530378..18530444	CG10211-RA,	FBgn0032685,	CG10211,	1	.
CG11980-RB	GGATACTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATTCCAGCCCGG	67	+	chr3R	4830521	4830588	4830521..4830588	CG11980-RB,CG11980-RC,CG11980-RA,	FBgn0037652,	CG11980,	1	.
CG7466-RA	GTGGTGGCTAGCATTTGCTCAATTAGTTCTTTAGCTCTCTACTGCGCACTCTTACGCACCGGTGTACCT	69	+	chr2L	8053834	8053903	8053834..8053903	CG7466-RA,	FBgn0031981,	CG7466,	1	.
CG5746-RA	GCGCGTGCTTCGATAGGCCAAAAAACCAAATAAGAAGGGACTAGGGCAGAGTAACATGGAAGGGAATAT	69	-	chr3R	20172312	20172381	20172312..20172381	CG5746-RB,CG5746-RA,CG5746-RC,CG5746-RD,	FBgn0039186,	CG5746,	1	.
CG6420-RA	CCGTCGCAGACTACATCGGGATACAACAGCAAGACTTCCAACAGCTCGAACAAGTCCTCCAACTCGGG	68	-	chr3R	22547217	22547285	22547217..22547285	CG6420-RA,	FBgn0039451,	CG6420,	1	.
CG17237-RA	ACCGATCCAATGATGTCCAGGAAAGGCAATCAACTCCACCCGTCATCAATCCGTCCATCATCGACCAC	68	-	chr2L	2289148	2289216	2289148..2289216	CG17237-RA,	FBgn0031410,	CG17237,	1	.
CG14434-RA	ACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTGCCTGACAGAGGATCAAACCC	69	-	chrX	6746188	6746257	6746188..6746257	CG14434-RA,	FBgn0029915,	CG14434,	1	.
CG30165-RA	TGCCGCAACATGGTGGATTTCATCAACGGCCTCACCTTCTTCATCTTCCTTACACTGCTTCTCTGGGC	68	-	chr2R	20305202	20305270	20305202..20305270	CG42310-RB,CG42310-RC,CG42310-RD,	FBgn0259210,	prom,	1	.
CG11227-RC	GGGCATTCTGAAAAACCTTGCCAACGGTTATTTGAAGTTGGTCCACGAAATCGAGACCCACCTCTGC	67	-	chrX	20804219	20804286	20804219..20804286	CG11227-RA,CG11227-RB,CG11227-RC,	FBgn0031139,	CG11227,	1	.
CG10638-RA	ACTGAGCGATGTCGACTATCTGGATACGTACAAAGCCATGGAAAAGCTGGTAAAACTGGGCCTGGT	66	-	chr3L	12492131	12492197	12492131..12492197	CG10638-RA,	FBgn0036290,	CG10638,	1	.
CG15000-RA	CGCGCTACAATCTGTTCGCCATGTACCAAAAGTTTGCCAAGCCGCCATTTGATCTGTCGGAAATTGCCA	69	-	chr3L	4154373	4154442	4154373..4154442	CG33545-RB,CG33545-RC,	FBgn0259986,	nab,	1	.
CG2097-RA	AGTGCCCCGATTTAAGGCCAGCATTGTCGGAATACGCGGAGAGCATGCAGGATGAACCAATGAATG	66	-	chr3R	1564381	1564447	1564381..1564447	CG2097-RA,	FBgn0037371,	Sym,	1	.
CG10880-RA	TGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCTTCGGGTTCAAGTGTCGAAAGCAACGGCA	67	-	chr2L	2215863	2215930	2215863..2215930	CG10880-RA,	FBgn0031398,	CG10880,	1	.
CG32158-RA	GCGACTCGGTGTGCATTCTGTTCGCCAGCATACCTAACTTCTCCGAGTTCTACGTGGAACTGGAGG	66	-	chr3L	16498245	16498311	16498245..16498311	CG42513-RB,CG43373-RC,	FBgn0263131,	CG43373,	1	.
CG10125-RA	CGGTCGGCTGAAGCATTTGTGCGATGATTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGAC	66	-	chr3L	6598480	6598546	6598480..6598546	CG10125-RA,	FBgn0024177,	zpg,	1	.
CG18557-RA	GGCACAGTAGAAGAGGTTGTCGATCAGGCGAAACCCAATGAGTTCCCTTGGACTGTGGCTCTGATGC	67	-	chr2L	2845343	2845410	2845343..2845410	CG18557-RA,	FBgn0031470,	CG18557,	1	.
CG32248-RA	TCAGCACTTCCGTTTGGATCCGCAGATTCTCCGACTTGTATAAAAGTACAGGAGTCGCCGGTCTAAGAT	69	+	chr3L	4471653	4471722	4471653..4471722				0	no match
CG15312-RB	ACATAGATATAGAAATGAGAGAGAGCTTATCGATCGATCGAATGTTTCGTTTTCATTTCGGTTTCCTG	68	-	chrX	9951176	9951244	9951176..9951244	CG15312-RB,CG15312-RC,CG15312-RA,	FBgn0030174,	CG15312,	1	.
CG3582-RA	GCTCTCGCATCCACAACAAACCCACTTTCTCGCAGACGGTGCTTCTCCAAAATCTATACGTGAACCCCC	69	-	chr2L	294250	294319	294250..294319	CG3582-RA,	FBgn0017457,	U2af38,	1	.
CG3525-RC	TCGTGCCAGCCTTAGTGTATGTACAGTGCTCACTCGAAACAGTGGACTATTGAGAACCAAGGGTGTGCA	69	+	chrX	16179305	16179374	16179305..16179374	CG3525-RC,CG3525-RB,CG3525-RA,CG3525-RF,CG3525-RG,CG3525-RH,	FBgn0000536,	eas,	1	.
CG6393-RC	CCGACAGGCACGCAAAATATGCAAATACCAGGAGTGCATCTCTATTGACCGGTCAAATACTCGGCTTGG	69	+	chr2R	17948537	17948606	17948537..17948606	CG42257-RD,CG42257-RE,	FBgn0259142,	Snp,	1	.
CG3193-RA	TCGACTTCGAGGTAGCCCTAGGCGAAACAGAGCTAGCCAGACAGCTTTACGAGCGACTCCTTGAG	65	-	chrX	2142224	2142289	2142224..2142289	CG3193-RA,	FBgn0000377,	crn,	1	.
CG11401-RA	CCAGCGTGCCTCATATATTTGCAGTTGGGGACATCATATATGGTCGACCAGAGCTAACGCCGGTG	65	+	chr3L	22544441	22544506	22544441..22544506	CG11401-RA,	FBgn0037170,	Trxr-2,	1	.
CG17652-RA	TCTGCTGCAGGAGAGTCTTCGCAAGATTCCCGGACGTTGTCTGCTCTATCTGCACAAAGCCACTC	65	-	chr2L	1731713	1731778	1731713..1731778	CG17652-RA,	FBgn0031361,	CG17652,	1	.
CG17829-RA	GCATTTAGTCCTACCTAGAACCTAGTGCGATTGGATGAGATAGCACCCGGGGACGCGATACCCTGCC	67	+	chrX	521383	521450	521383..521450	CG17829-RA,CG17829-RC,CG17829-RB,	FBgn0025635,	CG17829,	1	.
CG1489-RA	GCAAATGCAGAGTCATACAATAAAGAGGAATTAATTCGACATCTTGCATTGTGGTCCTTCAGTTCGACA	69	+	chrX	21187098	21187167	21187098..21187167	CG1489-RA,	FBgn0020369,	Pros45,	1	.
CG4165-RA	CGTGCCTCAATAATTTCACCGCTGTCGAGCTGATGACGGGACAGAACAAGGTGGGATGCGATAGCTG	67	+	chrX	5319583	5319650	5319583..5319650	CG4165-RA,CG4165-RD,CG4165-RC,CG4165-RB,	FBgn0029763,	CG4165,	1	.
CG14685-RB	CCCATCCCAAAGATGTGGCCTACTCCTTCTGATGCCGACTCGGGGATATCTTCGATGGGCTCATCATTG	69	+	chr3R	6591526	6591595	6591526..6591595	CG14685-RG,CG14685-RE,CG14685-RF,	FBgn0037831,	Cap-H2,	1	.
CG10795-RA	AAACCGGAATCGAAAACGACAACAGATAGTACCCGCGAGAAAGAGCTCCCGCCAACAGAACACCA	65	-	chr2R	17271709	17271774	17271709..17271774	CG10795-RA,	FBgn0034626,	CG10795,	1	.
CG7600-RA	TGCGTATGTGCTCAATTCCGAGAATTTCCGCAGCCTGAACTCTCAGCTCAAGAACGGCTGTGTGC	65	+	chr3L	11206024	11206089	11206024..11206089	CG7600-RA,	FBgn0064766,	CG7600,	1	.
CG3362-RA	CGGCTTCCCCTTCGACCAGTCGGAAATAGATCAGATAGCCAGCAAGTACACGCATGCGCTACGTG	65	+	chr2R	20083780	20083845	20083780..20083845	CG3362-RA,	FBgn0034988,	CG3362,	1	.
CG5254-RA	CGGATTCCTGGAGGTCTGCATCATGCAACCACTCGATGTAGTCAAAACTCGCATCCAGATCCAGGCC	67	+	chrX	650439	650506	650439..650506	CG5254-RA,	FBgn0040383,	CG5254,	1	.
CG7938-RA	GTGCCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACCAGCG	65	+	chr3R	25865668	25865733	25865668..25865733	CG7938-RA,	FBgn0003511,	Sry-beta,	1	.
CG30071-RA	TGCTCCCTCGATCTCCTTCACCTCGATTTGTTACCGTTTGAATTTATTGCTGCCCACTACACTTTTGGT	69	+	chr2R	10092681	10092750	10092681..10092750				0	no match
CG17970-RA	ACCGCACTGGGAGTAAAACTTGATGACTTGTCGGAGGGTATTCGATATCGCCAGTCGATTCACGCCATT	69	+	chr2L	5267380	5267449	5267380..5267449	CG17970-RB,	FBgn0031694,	Cyp4ac2,	1	.
CG3416-RA	GTGGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCATCAACGAGCTGGTCCG	65	+	chr2R	20291061	20291126	20291061..20291126	CG3416-RA,	FBgn0002787,	Mov34,	1	.
CG3590-RA	CAATGTCTCGCTGTTGCTAAATGGATTATCACATTTAATTGACTGCATTCAGATCAGATCAGATTGCAA	69	-	chr3R	12844582	12844651	12844582..12844651	CG3590-RA,	FBgn0038467,	CG3590,	1	.
CG13618-RA	TTGGCTGTGGCTCTTGGTCAATCGATTTCGTACATCCGATCCGATTTCGTACATCCCCCCGGACGAAAT	69	+	chr3R	20350625	20350694	20350625..20350694	CG13618-RA,	FBgn0039203,	CG13618,	1	.
CG32691-RA	CGCGTACACGCTTCAAAAATTCAACGGTCCGCCTATGAAAACGAACCTGCAAGAGGAAAAGCCACAG	67	+	chrX	10058997	10059064	10058997..10059064				0	no match
CG9964-RA	TTCGTGCGAAAGCTTTTCTCCATGCGATTCTTCACCAAAGCAACGGATGAGTTCTTCCTGCGACT	65	-	chr2L	2563883	2563948	2563883..2563948	CG9964-RA,	FBgn0031432,	Cyp309a1,	1	.
CG11527-RA	CAGCAGCAAATTGAGGAGCTGGGATGGAACGAAAAGCTAGAGGACCTTGGACAGCAGACGCAAGT	65	-	chr2L	6415701	6415766	6415701..6415766	CG11527-RA,	FBgn0011722,	Tig,	1	.
CG14731-RA	TGGCCATTTTGATGCCACGGTCCTTTCCAAAAATGAAACCTCGCTGCAAGGACCTATCACAAGGACTGA	69	+	chr3R	7759115	7759184	7759115..7759184	CG14731-RA,	FBgn0037964,	CG14731,	1	.
CG18678-RA	GGCTTCTCCCTGACCTACGGAGCTCTGATGCTGAAGACCTGGCGGATATCGGTGATTTTCCGAGTTC	67	+	chr2R	19372602	19372724	19372602..19372646,19372701..19372724	CG34372-RC,	FBgn0085401,	CG34372,	1	.
CG5279-RA	CGTGTGGTCCTACGTGATACCGATGACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCG	69	+	chr2L	12009215	12009284	12009215..12009284	CG5279-RA,	FBgn0014019,	Rh5,	1	.
CG31187-RA	CCACGGACGAGGTAATCTCCGAACGTGAATGCTACGTGCTCCTCAACTTCATCGAAGCCGTCAGCT	66	+	chr3R	3678073	3678139	3678073..3678139	CG34384-RA,CG34384-RB,CG34384-RC,CG34384-RD,CG34384-RE,	FBgn0085413,	CG34384,	1	.
CG11183-RA	ATTCAGCTCCTGAGCGACCTGAAGATCGGTAAAAGCTACGCTACGGCTCAATCTCCGACAGTCGC	65	-	chr2R	19776897	19776962	19776897..19776962	CG11183-RA,CG11183-RB,	FBgn0034921,	Dcp1,	1	.
CG7579-RA	GGCTTTCGATTGGCAGTTGGATCACATTTTTCTGCCCCTGGATCAGCACTCGTGGAATAGCCTTCCCAA	69	-	chr3L	15675711	15675780	15675711..15675780	CG7579-RA,	FBgn0036528,	CG7579,	1	.
CG6283-RA	GCACCCTTCGGCAAGATTGAGTAGAACCATGTTCTCTGAATAAAATACATTACTGAATACTCAAAAAA	68	-	chr3R	22845953	22846021	22845953..22846021	CG6283-RA,	FBgn0039474,	CG6283,	1	.
CG3253-RA	TGCTGGCTATCAGTTCTACGTCCTTTCCCCTGTGTTTACCGGTCATTGGGGATTGCAGAGGAAGCAG	67	+	chr2R	20003657	20003724	20003657..20003724	CG3253-RA,CG3253-RB,	FBgn0041706,	CG3253,	1	.
CG4847-RC	AGCCGAACCACTCCATTCTGGTCGTCGGTTACGGATCGGAGAAAGGACAGGATTACTGGATCGTCAAGA	69	+	chr2R	13401090	13401159	13401090..13401159	CG4847-RA,CG4847-RC,CG4847-RD,CG4847-RB,CG4847-RE,	FBgn0034229,	CG4847,	1	.
CG10737-RC	CCACCGGAACCCTCAATGGTGATTCTTCCCGTTCATTATCTGTCGATCGTGCCACTCTGTCCAAAAGCA	69	+	chr2R	15062735	15062804	15062735..15062804	CG10737-RD,CG10737-RC,CG10737-RT,CG10737-RP,CG10737-RO,	FBgn0034420,	CG10737,	1	.
CG7717-RA	CGGAGAGCCTATCCCAGGAGGGTCACGACTTCATCGATCATTGTCTGCAGCACGATCCCAAGAGG	65	-	chr3R	14559192	14559257	14559192..14559257	CG7717-RB,CG7717-RC,	FBgn0024329,	Mekk1,	1	.
CG33300-RA	AACATCCGTAGAAACTACTACCAATTCATCGAATCAGAGCAATACGACCACGGAATCAACCACCA	65	-	chr2L	9898272	9898337	9898272..9898337	CG33300-RC,	FBgn0053300,	Muc30E,	1	.
CG7006-RA	CCTACTCAACACTGAAACATTTCTCACGTGTAAAGTTGAGCAGTTTGTTTTCCTCTTTTTTCCGCTTAA	69	+	chr3R	20676356	20676425	20676356..20676425	CG7006-RA,	FBgn0039233,	CG7006,	1	.
CG6523-RA	GGCCAAGATTACTGGCGAAAAACTGCAGTTCATCAGCCTAAACGCTGAACAATTTCCCGAGATTTCCAT	69	+	chr2L	13366661	13366730	13366661..13366730	CG6523-RA,	FBgn0032509,	CG6523,	1	.
CG7525-RA	GTTGAGACAACAAAATACGTTCTAGGCCTTACGATTAATGAATGGCGCTACCTATGCTTAGTTTAAAGT	69	-	chr3L	4510937	4511006	4510937..4511006	CG7525-RA,	FBgn0014073,	Tie,	1	.
CG10340-RA	ACGCTCCGGAGTGTCTCACAGTGGTTCACTATACCGAGGTCCAAGACAAGGGTGTAGTTCTCATGCG	67	-	chr3R	12439361	12439428	12439361..12439428	CG10340-RA,	FBgn0022344,	CG10340,	1	.
CG15043-RA	TGCCGTGACTGGAGACCCTTAGTCCACACACTTCGTTTACCTCGAATTTCAATTCAACGCCCAAGATGT	69	-	chrX	18388111	18388180	18388111..18388180	CG15043-RA,	FBgn0030929,	CG15043,	1	.
CG17797-RA	TGGCGGCACATTCGTCTCCACCCTAACCGGACGAGAACCCTTCTTTGTCAAATGGAAGAGTAATCAGGA	69	-	chr2L	8392612	8392681	8392612..8392681	CG17797-RA,	FBgn0015583,	Acp29AB,	1	.
CG31266-RA	TGGACTGGTGGGATCTGTATGCTCCGTACTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGAC	68	+	chr3R	12958734	12958802	12958734..12958802	CG31266-RB,	FBgn0051266,	CG31266,	1	.
CG18112-RA	ACTGCGAGAATGCGCTGAAAAGCCTCCAGAGCAAGCGATGGACTACGGACAACATCAAGCTCAAGTTG	68	-	chr3R	25640787	25640855	25640787..25640855	CG18112-RA,	FBgn0039702,	Vps16B,	1	.
CG10602-RA	AAGACTGCCACTGAGTTGTGTGGTCCGTATGTCTGGAAGCAGTACGATCTTCTGGTGATGCCCCC	65	-	chr2L	18856377	18856442	18856377..18856442	CG10602-RD,CG10602-RC,CG10602-RB,CG10602-RE,	FBgn0032721,	CG10602,	1	.
CG14812-RA	GCCTGTTACATTTGTCGCTCATTCTAACCGATAGCCATTACCATAAGCATTGTTTTGTACGACTCGCAT	69	-	chrX	1752149	1752218	1752149..1752218	CG14812-RA,	FBgn0026090,	CG14812,	1	.
CG14529-RA	CCATGCTGTCCAACATGAGCGATGCTTACGGACCGATTCTTAACGTGACTCGCTTTGTGACCTCCTGGT	69	+	chr3R	24699429	24699498	24699429..24699498	CG14529-RA,	FBgn0039609,	CG14529,	1	.
CG5650-RA	CAGCGCTTTTATAGGTTTTGTCCAAAATTTAAACACTAGGTTAATCAACTGACCGTTCGAGCAGAGCAC	69	-	chr3R	8249878	8249947	8249878..8249947	CG5650-RA,	FBgn0004103,	Pp1-87B,	1	.
CG31363-RB	GCTGTCAAACTCGGCGAGACTCTGGAAATAATCCCGAACAGCCATACTCGCTGAACAAGATGGCAGGC	68	-	chr3R	7417379	7417447	7417379..7417447	CG31363-RB,	FBgn0051363,	Jupiter,	1	.
CG33252-RA	GCATTACATGGTTCCCTTCGTTGTGCTTTCGTTGATCATCTTGATCATCTATGTGTTCGTCGTGG	65	-	chrX	16790573	16790638	16790573..16790638	CG33252-RA,	FBgn0053252,	CG33252,	1	.
CG5946-RB	CCCTCGGGTAGGCTACAATATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCC	68	-	chr3L	11811489	11811557	11811489..11811557	CG5946-RB,CG5946-RA,CG5946-RC,CG5946-RD,CG5946-RE,CG5946-RF,	FBgn0036211,	CG5946,	1	.
CG31737-RA	TTCAATCAGTCGAAAGTGTGGTTACCATTTCCGATGTGAATGAAAGGCATACCACCAATCATTAC	65	-	chr2L	16340085	16340150	16340085..16340150	CG42266-RA,	FBgn0259151,	CG42266,	1	.
CG14292-RA	ACCCAACGACTGAGAACCAAGTGAACTCAGATAAATTAAAAGAAATGAAATTCGCAATTGTTCTACTG	68	-	chr3R	14731304	14731372	14731304..14731372	CG14292-RA,	FBgn0038658,	CG14292,	1	.
CG32100-RA	GGGCGAGAAACCTCTGCCAAATCAAAGAGCAGCGTACAAGAACCACCGAAATGCAAGGGTCGCAAAC	67	+	chr3L	12261481	12261548	12261481..12261548	CG32100-RA,	FBgn0052100,	CG32100,	1	.
CG32040-RA	GGAAGAACCTCCGGTGGAGAACACAACCCGAAAACCTCCTCCGATAACCTTCGATTCCGGGCAAATG	67	+	chr3L	9347734	9347801	9347734..9347801	CG32040-RA,	FBgn0052040,	CG32040,	1	.
CG15010-RC	ACGGAACGGAGGAAACAAAGCTAATGGTCCTCGACTTTGATGTTGAGGGTGCATGTGTGAAGTGCTCAT	69	-	chr3L	4247477	4247546	4247477..4247546	CG15010-RC,CG15010-RB,CG15010-RA,	FBgn0041171,	ago,	1	.
CG5661-RA	ATCCAAAAGTGCCATCTAATGACTATGGAAATGTTACAACGAGAGAGACAAGTTTTATTTTTGCGCCAA	69	-	chr3L	12061145	12061214	12061145..12061214	CG5661-RA,CG5661-RB,	FBgn0250876,	Sema-5c,	1	.
CG6445-RB	TCGAACTGGGGAACTGAGAACTGGAGGTTCATTCGCGGATTATGTAGATGGTTACTTCTTAATGCGGGT	69	-	chr3L	17362259	17362328	17362259..17362328	CG6445-RB,CG6445-RA,	FBgn0036715,	Cad74A,	1	.
CG31516-RA	CGCGTGGAGATTTGTCGAATGCAAAATACACAACCTTATCAGTGTACTAATTACCACCGCCCTAC	65	-	chr3R	45676	45741	45676..45741	CG31516-RA,	FBgn0051516,	CG31516,	1	.
CG14357-RA	CAATTGCTGAATACGGATAACGTGACCAATTACGGATTGATGAGGACAGGCAGATGCAAGGGAAATGCC	69	-	chr3R	9937741	9937810	9937741..9937810	CG14357-RB,	FBgn0038204,	CG14357,	1	.
CG9904-RA	ATGAGGGACTACGACTCGATGCTGAGGGGTCACTCCTGTCGGTCTGCCATGATGCGCTATCGTTC	65	+	chrX	2515026	2515091	2515026..2515091	CG9904-RA,	FBgn0040336,	Seipin,	1	.
CG9783-RA	CCGTCCAGGACTTTGAACGGGATCTATGCCCACAACAGCAATAGTACCAGTTCCCATGGTGCAGC	65	-	chr3R	319195	319260	319195..319260	CG34357-RA,CG34357-RC,	FBgn0085386,	CG34357,	1	.
CG4872-RA	GCCCTCCACATCCTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTGGCAAG	67	+	chrX	16775609	16775676	16775609..16775676	CG4872-RA,	FBgn0030799,	CG4872,	1	.
CG31913-RA	CCTGGAGCTCGAAACGAGACAGAACCCGAACACACGCTACCTGCTTAAGAAGCCCCCGAACTACT	65	+	chr2L	5784475	5784540	5784475..5784540	CG31913-RA,	FBgn0051913,	CG31913,	1	.
CG4787-RA	GCCCTCTCTGGCTTCCTCAACGAGGAGATTCTGCAGAAGACCTTTTCGCCGTATGGCACAATACAGGAG	69	+	chr3R	24061068	24061137	24061068..24061137	CG34354-RA,CG34354-RE,CG34354-RD,	FBgn0085383,	CG34354,	1	.
CG18417-RA	AGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGCTCTGTCCGAACTGGTCAAGAATGCGTCAT	69	+	chr3L	7393343	7393412	7393343..7393412	CG18417-RA,	FBgn0035780,	CG18417,	1	.
CG10776-RA	TCAACGGGACCACCAACAATAACTCCATCCAGAGTCATGGTAGCGAATTGCAGACCCTCACCCGTC	66	-	chr3L	4065524	4065590	4065524..4065590	CG10776-RA,	FBgn0024179,	wit,	1	.
CG33281-RA	CTGAGGGCAAGACTCGAAAGGCATTCCTAATCGGACTCGGACTGATAAGCTTCAATCAGCTGTGCG	66	+	chr2L	3325881	3325947	3325881..3325947	CG33281-RA,	FBgn0053281,	CG33281,	1	.
CG32821-RA	ACTGTCCAATGCACACCCAAACAGCCTGGCCAGGACGCTAGGAACCGCAGCTGCAGCCAATGCTG	65	.	.	.	.	.				0	no match
CG14843-RA	GCCCACGAGACACAATTAACGCTATCGCACCCGGCTAATCCACATTTGGTCACCGATACGGACAACCTA	69	+	chr3R	10247371	10247440	10247371..10247440	CG34388-RC,CG34388-RD,	FBgn0085417,	CG34388,	1	.
CG8019-RA	GTGGCAGACACCAGTTTCGATTTGCCCGAGGCTAATGTGCTTATCCAGATCTCTTCGCATGGCGG	65	+	chr3L	10626499	10626564	10626499..10626564	CG8019-RA,CG8019-RB,	FBgn0001179,	hay,	1	.
CG1577-RA	TCAGCTGTTTGGTTATGTGAACTACGTTTTTTCACAACTACTTTTTAGTTTTCGATAAATAATGCTGA	68	-	chr2R	3561801	3561869	3561801..3561869	CG1577-RA,	FBgn0033208,	mRpL52,	1	.
CR32905-RA	TGATGATTTTTCAGTTCTGCTACTGAAGACAGTTGACGAAAGCAAAAATACCAAAATCACTGAAA	65	+	chr2R	7780635	7780700	7780635..7780700	CR32905-RA,	FBgn0015543,	snoRNA:Me28S-A1322,	1	.
CG2928-RA	AGGCCTAGACCTAAGTCCTTGTGTGAATGTGATAGAGCAGATGAGGAGATCCTGCATCATAGAGTGCGA	69	-	chr2R	20675720	20675789	20675720..20675789	CG2928-RA,CG2928-RB,	FBgn0015801,	Reg-5,	1	.
CG7567-RA	CTCGGGATCCTGGCACTTCGGTACGCTGCTTCGACTACTACATACCCATCATCAACGGGCTGTCG	65	-	chr3R	25413572	25413637	25413572..25413637	CG7567-RA,	FBgn0039670,	CG7567,	1	.
CG31078-RA	ATGATGACCATTTTGGCTTGGGAGGTTCTATTGGGAAAGTCGATGGCTTGCACGCTCCGGCAATG	65	-	chr3R	22726313	22726378	22726313..22726378				0	no match
CG3631-RA	ACATCGAGGGCGACAAAATGTTCAAAACTCTGTAGTTTCAGCTCAAGATTGGGGCTAATGGCCAGCACT	69	+	chr3R	10707747	10707816	10707747..10707816	CG3631-RC,CG3631-RD,	FBgn0038268,	CG3631,	1	.
CG5392-RA	TCCTCAGGGTCAAGTTGCCTATTGGTCCGCCTGTCAATCCAGTCGCTTTAATACCTCACCTTCACCAGT	69	-	chr3L	14995555	14995624	14995555..14995624	CG5392-RA,	FBgn0036463,	Reck,	1	.
CG8954-RA	CCCCATTTGTGGTGGTCGATTCGAAGGCATTGACCGAATACAATGGCATAGTCAAGTCGCTGGTGAGGA	69	-	chr2L	13900664	13900733	13900664..13900733	CG8954-RA,CG8954-RB,	FBgn0019890,	Smg5,	1	.
CG8807-RA	AACTTCCGCATCTGGTTCCCCCGGAAATGATGGAGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATA	69	-	chr3L	19597926	19597995	19597926..19597995	CG8807-RA,CG8807-RB,	FBgn0020277,	lush,	1	.
CG4389-RB	ACATGGCTAAGGACCCGTCGAAGAAGTTCTACCCCAAGACTGGCTCCTCGAAGTTGTAGATCCGATCCA	69	-	chr2L	9573759	9573828	9573759..9573828	CG4389-RC,CG4389-RB,CG4389-RA,	FBgn0028479,	CG4389,	1	.
CG9384-RA	GCTCTCCCCGACACACTCATTTTGCCAAATTGAAAACAATTAGCAAGCAACAATAATAGTGGATAGTGA	69	+	chr3L	14760506	14760575	14760506..14760575	CG9384-RA,	FBgn0036446,	CG9384,	1	.
CG32670-RA	TCAACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAATCGCTTGTCAGGTGGGC	69	-	chrX	10845902	10845971	10845902..10845971	CG32670-RA,	FBgn0052670,	Rab9Fb,	1	.
CG8916-RA	CGCGATTGCATCAGATGTGGATGTGCCTGAAGAGCGACAACAGTTTCCGGAAACAACGAGAACGCAACG	69	+	chrX	15818313	15818382	15818313..15818382	CG8916-RB,CG8916-RC,	FBgn0030707,	CG8916,	1	.
CG5435-RA	TCTTCCGCTATTAGTTCCACAAATCTGTGTTTGCTTTCCCAGAAAGAATACCATTTTGCGTTTTGGGTT	69	-	chr2L	12430016	12430085	12430016..12430085	CG5435-RA,	FBgn0032431,	CG5435,	1	.
CG6906-RA	CGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAACGCCCATTGACATCACGGAGAAGCAG	65	+	chr3L	12175472	12175537	12175472..12175537	CG6906-RA,	FBgn0027843,	CAH2,	1	.
CG4356-RB	GGGCCTGGTGCGAATCAAGCCGAAATCAAAGCGACATTTGTAGTGTCTGTGACACAGTACGCATATTTA	69	-	chr2R	20266618	20266687	20266618..20266687	CG4356-RA,CG4356-RB,	FBgn0000037,	mAcR-60C,	1	.
CG30281-RA	AGCTGCCGGAATCAACAGTAATGGCATCCATGTTATTGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTA	69	+	chr2R	18002851	18002920	18002851..18002920	CG30281-RA,	FBgn0050281,	CG30281,	1	.
CG9520-RB	AAGAGATCCGCCGAGACAAAGACGCAATAATAGAGACACACGGGTAGACACCTAATGTACATATAGCTT	69	-	chr2L	8943894	8943963	8943894..8943963	CG9520-RB,CG9520-RC,CG9520-RA,	FBgn0032078,	C1GalTA,	1	.
CG30355-RA	ACCCTAACGCCCTTGACTTGTGTGCAACAATGCAATGCTTTACTAGGCTCAACATCAGGAAAGCCGAGA	69	-	chr2R	4567237	4567306	4567237..4567306	CG30355-RA,	FBgn0050355,	CG30355,	1	.
CG12420-RA	AGGCGGAGATCACATGATCATCGCTATCACCACACTGTTGGTTTTGATCTGTTCCCTACATCTCGCCAA	69	+	chr3R	6048490	6048559	6048490..6048559	CG12420-RA,	FBgn0037797,	CG12420,	1	.
CG18067-RA	CCGGCTCAGGTGGAGTACTCCAATGGTGATATAGTCATCGAACTGGCCGATCATACGGTGATTGCCAAG	69	+	chr2R	16422583	16422652	16422583..16422652	CG18067-RA,	FBgn0034512,	CG18067,	1	.
CG12363-RA	GACACCGACGGATCGTGCACAGTACGCTGGGAGAACAAGACCATGTACTGCATCGTTTCGGTCTT	65	+	chr3R	14125398	14125463	14125398..14125463	CG12363-RA,	FBgn0024432,	Dlc90F,	1	.
CG32606-RA	GCGGGGGATGACAATTTGCTGTTGCTTTGGCCGTTGCTGACTCAAAACAGTTGCAAAGTTGTTGCTGAA	69	-	chrX	13808879	13808948	13808879..13808948	CG34346-RF,	FBgn0263115,	mamo,	1	.
CG12286-RA	ATTGCCGATATGCCGGGTGTGAACCGTATGTACCTGCAACAATTGTCCTTGGTGTCCATTGGCCT	65	-	chr3R	8509434	8509499	8509434..8509499	CG12286-RA,CG12286-RB,	FBgn0001296,	kar,	1	.
CG8028-RA	TCCTTGGGTCCTCGAAGTGCTGATCGTCAAGTTTCGGAGGCGTAACAAAATCGAACGCAACAACGTTGA	69	-	chrX	19171381	19171450	19171381..19171450	CG8028-RA,CG8028-RB,	FBgn0031010,	CG8028,	1	.
CG10623-RA	CGTCGATGGCCTCAACATAAAGCCGTAATCGGGAGAGAACTCCGGTCACTGATAGCAGCCTTGTCGCTA	69	-	chr2L	18955902	18955971	18955902..18955971	CG10623-RA,	FBgn0032727,	CG10623,	1	.
CG13031-RA	CAGCTGTGGATCCAGCACTGTTTCCTTCGGCCTCTACTTTCGGACTCTATCCAGGATCAGGTGGA	65	+	chr3L	16718103	16718168	16718103..16718168	CG13031-RA,	FBgn0036655,	CG13031,	1	.
CG1240-RA	TGTTCCACAACCTTTGATTAAGATTTAGTTGACGCATGTGTTTAGCATTACCCTAATTAGGACGGGTTT	69	+	chr3L	2768108	2768177	2768108..2768177	CG1240-RA,	FBgn0035370,	CG1240,	1	.
CG4440-RA	GCAGTTTTATCCTCAAAGACGATTCATCATATACTCTTACTCCAGTATCGCTAAAGAAGCTAAAAGTGT	69	+	chr2L	16329931	16330000	16329931..16330000	CG4440-RA,	FBgn0040984,	CG4440,	1	.
CG8907-RA	CCTGGCTGAGTAGATTGGAGAGCCGAAATGTCAAGATCGCCGAGGTTACCTTCAATAAGTCGGCCACCA	69	+	chr3R	12836469	12836538	12836469..12836538	CG8907-RA,CG8907-RB,	FBgn0038466,	CG8907,	1	.
CG7992-RA	TCATATGCATCTCGTATGTGCTCAAGTTGATCTGCACCAGCATCGTGTACTTCTACTTTGTGGCGGA	67	-	chrX	19139545	19139612	19139545..19139612	CG7992-RA,	FBgn0031004,	CG7992,	1	.
CG13852-RA	GCCCATCTCAACACGTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCTGATTGAGCGGCGC	69	+	chr3R	18248264	18248333	18248264..18248333	CG13852-RA,	FBgn0038965,	mats,	1	.
CG1883-RC	GTGCAGCGAAATAATAAGAGAAAAGGCCGCAATGATAATGGCAAATTACGATTTTCTTGTGAATCCAGA	69	-	chr3R	26034510	26034579	26034510..26034579	CG1883-RC,	FBgn0039757,	RpS7,	1	.
CG1064-RA	CCGAGGAGTTTGCCATTAAACTCTGTGCGGAATTGGGATTGGGAGGAGAGTTTGTTACGGCCATTGCCT	69	+	chr3R	1298097	1298166	1298097..1298166	CG1064-RA,	FBgn0011715,	Snr1,	1	.
CG18273-RA	CGCCAGGATGTACGAAGGATTGGTGAAGGATCACGAGAAGTACCACAAATTTAGGGGCAAGGTGTAGGT	69	-	chrX	376914	376983	376914..376983	CG18273-RA,	FBgn0029525,	CG18273,	1	.
CG5043-RA	GCTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTTGGTCCAGATCAGGATGCCCG	69	+	chr2L	17434569	17434638	17434569..17434638	CG5043-RA,	FBgn0032636,	CG5043,	1	.
CG6691-RA	GGGGTCCCATAGAAGATGAGTTCAGTCAGCTTCCCTGGTTCCGCCAGTACATAATGAGGATGTGGCACA	69	+	chr2L	22079946	22080015	22079946..22080015	CG6691-RA,	FBgn0032971,	ttm3,	1	.
CG18646-RA	GGCGGCGCTACTAATTGGATGGATGTGTTCCCGTATGACTGGTCCTAAGACTTATGGCTAACACACATA	69	+	chrX	12969817	12969886	12969817..12969886	CG42629-RB,	FBgn0261388,	CG42629,	1	.
CG13870-RA	GACATCCCATTTCCATTCGGGCGTATCCGGTTCCTCCGTACGTGCCCAAGATCACCTACAACTGT	65	+	chr2R	16232709	16232774	16232709..16232774	CG13870-RB,CG13870-RA,	FBgn0034506,	CG13870,	1	.
CG32654-RC	GCAGGGGAAAAGTTGGTCCTACGATATTTTCAAGATTCTACAGTTTGTTCAACTTCTGTCTGTCTGTGC	69	+	chrX	12503116	12503185	12503116..12503185	CG32654-RE,	FBgn0052654,	Sec16,	1	.
CG30193-RB	TCAGCGAACAATCGGATTTTACACACTCAGCGAAACACTTACACTTCATCACATTAACACTGTCGCCCA	69	+	chr2R	18817088	18817157	18817088..18817157	CG42678-RF,CG42678-RB,CG42678-RC,CG42678-RD,CG42678-RE,CG42678-RG,CG42678-RM,	FBgn0261564,	CG42678,	1	.
CG3186-RA	CGCGGCCATGCAAGATTGTCGAGATGTCTACTTCAAAGACTGGAAAGCACGGACACGCCAAGGTTCATA	69	+	chr2R	19946114	19946183	19946114..19946183	CG3186-RB,CG3186-RA,	FBgn0034967,	eIF-5A,	1	.
CG3044-RA	CCGCCACTTTGGATAATGCCACCATAGTCCTTCCCGATACCCTCAGACAGGTACTACAGAACGACACCC	69	-	chrX	6743143	6743212	6743143..6743212	CG3044-RA,	FBgn0029913,	Cht11,	1	.
CG6946-RA	TTGTTCAGTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAAAAATTGGG	65	-	chr3R	7642920	7642985	7642920..7642985	CG6946-RB,CG6946-RA,	FBgn0259139,	glo,	1	.
CG1119-RA	ACGGCAGATGCCCTAAGCTTGGGTGACCTTGTTGAAAAGCGTATTCGTGCGAATTCTGCTTGGAGTCTT	69	+	chr3R	734898	734967	734898..734967	CG1119-RA,CG1119-RB,	FBgn0004913,	Gnf1,	1	.
CG32847-RB	TGCTGATCACGGCATAAGGGATGGGCAGAACGAAACACTCCTTTCTAAGTTCTTTCTCTACGTGGCCAT	69	+	chr3L	15115116	15115185	15115116..15115185	CG32847-RB,	FBgn0052847,	CG32847,	1	.
CG10000-RA	AGACAGTGGCAGTTAGAGCAACAGTAGCAGAAAATGCCAGCAGAAAACAGAAGTTCATGGTGTGGCTGC	69	-	chr3R	24574202	24574271	24574202..24574271	CG10000-RA,	FBgn0039596,	CG10000,	1	.
CG40044-RA	GCCAGAAGATACACGAGCTGAACGCAATGAAGTCAGAAGATTAGAACAACGACAGTCACGCCGTTTCAC	69	+	chr3L	24001505	24001574	24001505..24001574				0	no match
CG12486-RA	GCGATGCATTCGAGAATGTGGAAGCTACAGTGAGTAAAGGACACACCAGAATACCACAATCGCTCCCGA	69	-	chr3L	15848816	15848885	15848816..15848885	CG12486-RA,	FBgn0036541,	CG12486,	1	.
CG10691-RB	TCGCGCAGTAGCTGGGTGCATCTAGTTCCGTTAAGTTGTAACTACCTATAGCATTTACTAAGTACTTTT	69	-	chr2L	19122360	19122429	19122360..19122429	CG10691-RB,CG10691-RA,CG10691-RC,	FBgn0002031,	l(2)37Cc,l(2)37Cc,l(2)37Cc,	1	.
CG7345-RA	GTACCGGCATCTCATCCTACGGATGCGTCAAGTCAGAGAAGTCCTCACCAAATGCGGTAGTGGCC	65	-	chr3L	14097383	14097448	14097383..14097448	CG7345-RA,	FBgn0036411,	Sox21a,	1	.
CG13576-RA	TATACGCCTTTCCCAACAACGTTTTCAGCAGTCCGGTGCAGATGATCATGAAGGCGGGATTCCCC	65	-	chr2R	20137006	20137071	20137006..20137071	CG13576-RA,	FBgn0034994,	Ir60a,	1	.
CG13542-RA	GATGAGGATGAAGTGGAGGCTGGGCATGCTACAGTCCATCTGGGAGCGGGATCCACATTCGAATG	65	.	.	.	.	.				0	no match
CG7476-RA	CAGTTTGGGGACGGTTCGATTACGCCGATTGAAAAGCATTTAAGGGCCTGTGTTTGCAGCGTGCG	65	-	chr3L	8173360	8173425	8173360..8173425	CG7476-RA,CG7476-RB,	FBgn0035847,	mthl7,	1	.
CG9372-RA	TGAAGGCATTTCTTTGGGCATTGGTGATTTTACTGGGCTATATCCCGCAGAGTACAATCGCCAAGACTG	69	+	chr3L	19599681	19599750	19599681..19599750	CG9372-RA,	FBgn0036891,	CG9372,	1	.
CG11997-RA	CCCACTGCCAATTCCTTTAACAATTCCTCAAAAGGGCCAAAATCAAGACCTGCAATATCAAGGGGTCGA	69	+	chr3R	5004447	5004516	5004447..5004516	CG11997-RA,	FBgn0037662,	CG11997,	1	.
CG14325-RA	CTGAGGCATGTTCCCCTCGAGAAACTGGTGCTTCGCTTGAATCCCATTCAAAGTGACGGAGCTGC	65	+	chr3R	13454320	13454385	13454320..13454385	CG14325-RB,	FBgn0038531,	CG14325,	1	.
CR33328-RA	CCGAGGGTCCTTGGTGAGAACAACACCAGTAGAGCCACTATATCCATCTACTATCCACCGACATCCGAA	69	-	chr3R	9464664	9464733	9464664..9464733	CR33328-RA,	FBgn0053328,	CR33328,	1	.
CG1341-RA	CGCTGCCTCCCAAGATTGATCCTACGGTTACCATGATGCAGGTTGAGGACAAGCCGGACGTCACC	65	-	chr2R	3540823	3540888	3540823..3540888	CG1341-RA,	FBgn0028687,	Rpt1,	1	.
CG4711-RA	GAGCTAGAGGCGTTAGCCATGATGCGTCACTTCGGAATGATGTCCATGGCAACAGATTCGCTGCC	65	+	chr2L	16681036	16681101	16681036..16681101	CG4711-RA,CG4711-RB,	FBgn0002652,	squ,	1	.
CG10139-RA	TGCATCGGATCAGTCCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAGCAGGT	69	+	chr2R	10533237	10533306	10533237..10533306	CG10139-RA,	FBgn0033951,	CG10139,	1	.
CG14462-RA	TGCCTGTAGTTCCGGTAGCATTTCCCCGGTGCCCATCATACCCATCATCTCCATCAGTCACGATG	65	+	chr3R	3641026	3641091	3641026..3641091	CG34384-RA,CG34384-RC,CG34384-RD,CG34384-RE,	FBgn0085413,	CG34384,	1	.
CG4488-RA	TGGCATGGACAGCGTCTATGAAGAACTGCGCCATTCAGAGAATCTGGTTACGTACAAGATCGGCGACCT	69	-	chr2L	6912489	6912558	6912489..6912558	CG4488-RA,	FBgn0011737,	wee,	1	.
CG3861-RB	GCTGCTGCAGTACTACGGCATGAAGGAGATGAACTACTACACCGTGTTGTTCGGCGTTTCCCGTGC	66	+	chrX	6254224	6254290	6254224..6254290	CG3861-RB,CG3861-RA,	FBgn0261955,	kdn,	1	.
CG5501-RD	ATTGATAGTTCAGGCATCTACGTAATTAAAGCTGGAGTTGAGTTCTAGAGCTTCAGCGATGTCACATGC	69	-	chr3R	19980696	19980765	19980696..19980765	CG5501-RD,CG5501-RE,CG5501-RG,CG5501-RH,CG5501-RB,	FBgn0039157,	Myo95E,	1	.
CG10580-RA	GCCGGTCACCGAGTTGGATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACGACACCCGGCT	69	-	chr3L	20936706	20936775	20936706..20936775	CG10580-RA,	FBgn0011591,	fng,	1	.
CG5423-RA	GGCAGCAATAACAACAATCACCAGGGCAATGACTACCAGTCGACCGGGATGTACTCCGCTCCACC	65	+	chr2L	1292855	1292920	1292855..1292920	CG5423-RA,	FBgn0041097,	robo3,	1	.
CG13455-RA	GTGGGAAAGGACCAAGGATGAACCTGAGCACCCTTCTGAGGAGTGTGAGCAACGGTCTTGGCTTC	65	+	chr3L	15489797	15489862	15489797..15489862	CG13455-RA,	FBgn0036498,	CG13455,	1	.
CG9075-RB_00240-00478	CAAGCCGTCGAAATTCAGGATATAAGTTTACCTAGTCAATTCTTTATTGTTGATAATGGATGACCGAAA	69	+	chr2L	5982764	5983021	5982764..5982821,5983009..5983021	CG9075-RB,CG9075-RD,	FBgn0001942,	eIF-4a,	1	.
CG31937-RA	GCTCGATCTCGACGAGCATAAGACGCATCTCAACACGGTGCTCAATCACTTTCATCGACTGGATGTCCT	69	+	chr2L	1730312	1730381	1730312..1730381	CG31937-RA,	FBgn0031360,	CG31937,	1	.
CG9204-RB	GCTGGGAGACTCGGCCTCCTACTCAACGAAATCCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAA	69	-	chr2R	16143974	16144043	16143974..16144043	CG9204-RA,CG9204-RB,CG9204-RC,	FBgn0025720,	Ate1,	1	.
CG8434-RA	GCCTTTGCTATGGAAATAGGACAGCTAGAGAAACATACCAGTGTCTTCGTAATTTATGAAATTAATCGT	69	+	chr2R	12056548	12056617	12056548..12056617	CG8434-RB,	FBgn0034083,	lbk,	1	.
CG5142-RA	AGCCCAGGCATTGGATTACACATCCGAGATTGTAGAGCGAGGAATGCGCAATCATCCAGAGCTTGGAAT	69	+	chr2L	13107619	13107688	13107619..13107688	CG5142-RC,	FBgn0032470,	CG5142,	1	.
CG6652-RA	AAGGACAGTGCCGAAGACAAGAGTGGACCCAACACTCCACCTAGTCAAATCGAACGACAGGTGGG	65	-	chr3L	17014486	17014551	17014486..17014551	CG6652-RA,CG6652-RB,	FBgn0036687,	CG6652,	1	.
CG4818-RA	GCCACTAATCTGCCAAAGGCTAAAGTTCCCCAGGAGTCGCTAGAATTTAGTCCCAGGAGCGCGTCG	66	+	chr3L	16356043	16356109	16356043..16356109	CG4818-RA,	FBgn0036617,	Cpr72Ea,	1	.
CG14031-RA	CATCATGAGAGACGCACGGCATTTCCCGAAACCAAATCAATTCCTGCCCGAACGTTTTCTGCCCG	65	+	chr2L	5270006	5270071	5270006..5270071	CG14031-RA,	FBgn0031695,	Cyp4ac3,	1	.
CG10699-RA	ACTTCGGTTTGCCAAAAGGTGGGCTTAGCTTGAAGATACACCTGACACGGCTTGAATGTTACTAGGCGT	69	-	chr2L	19079694	19079763	19079694..19079763	CG10699-RB,CG10699-RA,	FBgn0002023,	Lim3,	1	.
CG5122-RA	GAATTCTTTCGGTCCAAGGGTTACGTCCGATCGGTGACCTTCCAGCTCTTCACCTCCCAGGTAGC	65	+	chr2L	13134408	13134473	13134408..13134473	CG5122-RA,	FBgn0032471,	CG5122,	1	.
CG30387-RC	TGGAACAGCAGGAGGAAGAGGAATCAGCCCCTTTCGTCTTTACAGTGCGAAAATGACACAATCTTCTCT	69	+	chr2R	17197592	17197661	17197592..17197661	CG42672-RH,CG42672-RJ,CG42672-RM,CG30387-RI,	FBgn0261554,	CG42672,	1	.
CG1919-RA	CGTTGACGACCTCACAAAACGGCTGATCGATCCACTGACGAAGCCTGCTAAAATACTCAGTACCACAGT	69	-	chr3L	1840641	1840710	1840641..1840710	CG1919-RA,	FBgn0035281,	Cpr62Bc,	1	.
CG9188-RB	AGCGTCGCCAAAATCAGATAAAGCAGCCATACGCCAACATAGTCAGTCCCATACGCACCTACACCCAGA	69	-	chr2L	6962130	6962199	6962130..6962199	CG9188-RA,CG9188-RB,CG9188-RC,CG9188-RD,CG9188-RE,	FBgn0031878,	sip2,	1	.
CG12773-RA	CCAACTACCACCACTCGTCCGTTATCGAGGGTCGCCTCATAGATGACATCTAGACCGAGTCCAGGGTCT	69	-	chrX	1244894	1244963	1244894..1244963	CG12773-RA,	FBgn0024365,	CG12773,	1	.
CG5475-RB	GTCGCTTCTGATCGATCTGATCCACTGACGATCTGATTCATGAATGCCTAACACGCATCGGAATGGAGT	69	-	chr3R	19977638	19977707	19977638..19977707	CG5475-RB,	FBgn0015765,	Mpk2,	1	.
CG12661-RA	TTGTGACAATTCGAGTTTGGAGGAGAAGCGAGAACGCGTTGACAATGCAATCCTAACCGCCATGGAGGA	69	-	chrX	8817577	8817646	8817577..8817646	CG12661-RA,	FBgn0030071,	CG12661,	1	.
CG8771-RA	GGTCGCTTCGCAAGCCATCTGTATAATTCGCTCACCGAACCTCGAAACGCTCTGGAAGCAAATCGTGC	68	-	chr2R	8568079	8568147	8568079..8568147	CG8771-RB,CG8771-RC,	FBgn0033766,	CG8771,	1	.
CG11147-RB	GGCCACAACCGTTGGCTATTTGCACTTTGCCCAGAACTTCAGCGATTCGATTCTCTCGGTAATGGAGGA	69	-	chr2L	5735363	5735432	5735363..5735432	CG11147-RA,CG11147-RB,	FBgn0031734,	CG11147,	1	.
CG5905-RB	GAACATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAAATCTGGTGCGGATCCATGCGGC	65	+	chrX	5997412	5997477	5997412..5997477	CG5905-RB,CG5905-RA,	FBgn0029843,	Nep1,	1	.
CG8816-RA	CCTGGAGCGGGGAAATCGTATTTATGCGAACGTATAGCCTCCGAACTAAAGTTTGAGTGGCTGGACTGC	69	-	chr2R	8457043	8457112	8457043..8457112	CG8816-RA,	FBgn0033754,	Ak6,	1	.
CG8584-RA	GGACGGGATATAATGTAAGACAGCGAGCCGACTCCACTAGCCTGTGCATTGAAAAAGAAAGGACTCGGG	69	-	chr2R	4589139	4589208	4589139..4589208	CG8584-RA,	FBgn0033322,	CG8584,	1	.
CG32922-RA	GCGTTCGGTCGCGAGATACCTGGCTAAGTGGAACCCCAAAAAAAGATCCCTGGATCGGTACAAACTCGA	69	+	chr3R	6512686	6512755	6512686..6512755	CG43161-RB,CG43161-RC,CG43161-RD,CG43161-RE,	FBgn0262717,	Skeletor,	1	.
CG12525-RA	GGGTTCAGAGTGCCGGTATTGTGGAATATTGGAAGCATCAAACTCTGCGCGAGATGATCACCATGGGCA	69	-	chr3L	9535526	9535595	9535526..9535595	CG12525-RA,	FBgn0036010,	Ir67a,	1	.
CG9249-RA	TGCGAATGCTATGATGCGGTGATAGTGTCTGAAGTTCTGGAGCACGTCAAAGATAAAGTGTCCCTGCTG	69	-	chr2L	21157894	21157963	21157894..21157963	CG9249-RA,CG9249-RB,	FBgn0032922,	CG9249,	1	.
CG13724-RA	AGGTTCAGACTATACCCACAGCATTATTGTCCGCCTTGACTACCAAGAAACCACATACGGTGACCACCA	69	+	chr3L	17316925	17316994	17316925..17316994	CG13724-RA,	FBgn0036707,	CG13724,	1	.
CG18110-RA	TCTACTACTGGGTGCAGACCTCCATCGAAAGGACTGACATGCATGTATCCGAGATCGATTTCCCAGCCG	69	+	chr3R	25495176	25495245	25495176..25495245	CG18110-RA,	FBgn0039677,	CG18110,	1	.
CG8046-RB	TGGTGTCTTGCAAGCACTTTCCCCCCTCATATCTTCCACCTTGTACGTTGCGATCTACACCCGTACACT	69	-	chr2R	5050420	5050489	5050420..5050489	CG8046-RA,CG8046-RB,	FBgn0033388,	CG8046,	1	.
CG5292-RA	TGCACACTCTGGGCGTCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAGGAAAGACG	65	+	chr3R	12977972	12978037	12977972..12978037	CG5292-RA,	FBgn0038491,	CG5292,	1	.
CG4913-RA	AAACAGCATGTGACCGGTTCAGAGAAGTCATCAACGGTCGACCCATCGCCTAAACTAGAGGGGGC	65	+	chr3R	11148833	11148898	11148833..11148898	CG4913-RA,	FBgn0026441,	ear,	1	.
CG7886-RA	GACATGCACATGGAGTCGTCGTATATGTCCCGCTCCGAAGAACTCTCCTCAACGGACGTTACGCTGG	67	-	chr3R	10452973	10453040	10452973..10453040	CG7886-RA,	FBgn0038248,	CG7886,	1	.
CG13687-RA	CAGCAGCCCGATCGCAGTACATCGAAAATGCTCAGTGCCCTATTCGGATTCAGTCCCAGCACTCC	65	-	chr2L	576210	576275	576210..576275	CG13687-RB,CG13687-RC,CG13687-RD,	FBgn0013323,	Ptth,	1	.
CG9243-RA	TGACGCAACGCAAGGAACTAGGTGTGCTGGCCAGAAATTGTCCCCATCTTGCTCTAGATCTGGGAAAGA	69	-	chr2L	21167445	21167514	21167445..21167514	CG9243-RB,CG43345-RB,	FBgn0263051,FBgn0263050,	CG43346,CG43345,	2	.
CG4009-RA	TGGCAACTGCTTACCTGGATCTCTCCTCCATCTATGGCAACAATCCCTCGCAAAACAGAAAGGTCCGCT	69	-	chr3R	12860977	12861046	12860977..12861046	CG4009-RB,	FBgn0038469,	CG4009,	1	.
CG4413-RA	AGCCGGTGCCAAATGAGATCGAGGAGGCTGAAACCTATGCTGAATACGAGGAATACGAACTGCTCACCA	69	-	chr3R	15856313	15856382	15856313..15856382	CG4413-RA,	FBgn0038767,	trem,	1	.
CG7439-RC	GAACCGTGGTCGATCGCACCATTGTGCATCCTAACGAGATGCAGTTCTTCATGGTCAGCCACCAG	65	+	chr3L	15553419	15553484	15553419..15553484	CG7439-RB,CG7439-RC,CG7439-RD,	FBgn0087035,	AGO2,	1	.
CG32581-RA	CGCGTCCCAATCGCAAACTCTGTCCCGTTTGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGCTGT	69	.	.	.	.	.	CG32581-RA,CG32581-RB,CG8974-RC,CG8974-RA,CG8974-RB,CG8974-RD,CG8974-RE,	FBgn0052581,FBgn0030693,	CG32581,CG8974,	2	.
CG12594-RA	GCTGGCATCAAGTGGCCATCAGCATACAGAACGGCGATTTCATATCGATTTACGTCGATTGCGCGTGGA	69	.	.	.	.	.	CG12594-RA,	FBgn0037941,	CG12594,	1	.
CG4324-RA	AACAAGGAGAGCCATCCCAATGAGTGCGTCACCTTCATGACCTCCGACTTTATGGACCTGCTGTGG	66	-	chr2R	19902974	19903040	19902974..19903040	CG4324-RA,	FBgn0034956,	CG4324,	1	.
CG16739-RA	GCCGCCATGAAGTTCTATCCGAATGCAGATGTCTGGTTCTGTGTGGACAAGACCAGCTGCTTGAACAGC	69	+	chr2R	16229605	16229674	16229605..16229674	CG16739-RA,	FBgn0034505,	CG16739,	1	.
CG30289-RA	GGAGGCCCATTGAGCTCGAAATTTCATTATGGCAACAGGCTTCTGAGTTTCCAGTACGGCTTGGTCAGC	69	-	chr2R	17408325	17408394	17408325..17408394	CG30289-RA,	FBgn0050289,	CG30289,	1	.
CG5925-RA	CTACAAGACGGCCGAATGGGGTTGCTACTCCCTGAATATAACGACGGCCTTCATCGACTTGTTCG	65	+	chr3R	8263252	8263317	8263252..8263317	CG5925-RA,	FBgn0043043,	desat2,	1	.
CG12585-RA	GCCCTCGATTTCAATAAGACCGTCGTCCTGTGGCCCTGTCCGCGAATGAAAGTGAGTACGTCCTTAGTT	69	-	chr3R	359852	359921	359852..359921				0	no match
CG1656-RA	CCAATGGACATTTAGGGAACCGAGGAATATTTGAGCTTTCACCAAATAAATTTGAGTTTTAACAACATG	69	+	chr2R	5705971	5706040	5705971..5706040	CG1656-RA,	FBgn0040093,	lectin-46Ca,	1	.
CG18214-RF	TTGGCGAAAGAATTCCAAATGATAAGGCAGGAAGCTTAAAGGCAAGCAAGAACAACAAACGAAAGTATG	69	-	chr3L	998009	998078	998009..998078	CG18214-RA,CG18214-RC,CG18214-RD,CG18214-RB,CG18214-RE,CG18214-RF,	FBgn0024277,	trio,	1	.
CG13784-RA	AGCATAAACGCGGATCTTCACCAGTGGACAACTCCTTATGACGAAGTGTCTCGCTGGTCGCCTGG	65	-	chr2L	7206323	7206388	7206323..7206388	CG13784-RC,	FBgn0031897,	CG13784,	1	.
CG13243-RA	TATCATTTCGGCGCTATTGAGACCGATTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGG	65	+	chr2L	15852906	15852971	15852906..15852971	CG13243-RA,	FBgn0028903,	CG13243,	1	.
CR32646-RA	TCGTACGTGTTCGTTCGTTGCTTTCGTTCGGTTTGATTCCATTCGGTTGTGTTTCTCGTTCGAGAACAT	69	+	chrX	12832569	12832638	12832569..12832638	CG4396-RA,CG4396-RB,CG4396-RF,	FBgn0086675,	fne,	1	.
CG11265-RA	GGAGAGCGACGCAGACCTACTAAGCCTAGTGTTAGGAACTTTGCCTCTGATCGCGCTAAATGTATTTCA	69	+	chrX	8461248	8461317	8461248..8461317	CG11265-RC,CG11265-RE,CG11265-RF,CG11265-RG,	FBgn0030049,	Trf4-1,	1	.
CG1664-RA	ATGATGGTTTTCACCGTGACGGGATTATTCAAAGAGCTGAACGACGAGACCAACAATCCCGCCTCCATG	69	-	chrX	10728129	10728198	10728129..10728198	CG1664-RA,	FBgn0003321,	sbr,	1	.
CG8178-RC	AACCTGTGAACACATTGATTACGACGTACAGTTGACGAATTTTCCCCTGGAACTGAATATGCCGGTGGC	69	-	chr2R	12541164	12541233	12541164..12541233	CG8178-RC,CG8178-RB,CG8178-RA,	FBgn0024319,	Nach,	1	.
CG18741-RA	ATGGATGGTCCAAGGGATGGTTAGGTGGGGAGGGAACAGAGATGGGGGAATTTCAAACAAATGGCAATT	69	-	chr3R	25456335	25456404	25456335..25456404	CG18741-RA,	FBgn0015129,	DopR2,	1	.
CG5516-RA	ACCGATTTGTGGTCTGTAGTATGTAGCTTTACTAGTTTAGTTTTCCCACACTTACACCGAAAATGAACA	69	+	chr3R	11790377	11790446	11790377..11790446	CG5516-RA,CG5516-RB,	FBgn0038389,	CG5516,	1	.
CG12065-RA	GGGGACCACTATTCGTAAACCAAAATGTGCATAGATTGCATCATATATAATGTATGTTCGCGTAATATT	69	+	chrX	8482347	8482416	8482347..8482416	CG12065-RA,CG12065-RB,CG12065-RC,CG12065-RD,CG12065-RE,CG12065-RF,	FBgn0030052,	CG12065,	1	.
CG12124-RA	GCTCCGGAAGATCTCTCCAAATCCACTGAAGGAGCAAAGACGAAGACCCAAATCAAGGCAAATACCAAG	69	-	chrX	9132150	9132219	9132150..9132219	CG12124-RA,	FBgn0260789,	mxc,	1	.
CR32028-RA	GGGAAGTGGGAGACAGAGCGATAAATGGAGGAGAAGCGAGGAGAGCTGAATAAAACCGATCAAGCAACA	69	-	chr3L	8433656	8433725	8433656..8433725	CR32028-RA,	FBgn0062463,	CR32028,	1	.
CG9465-RA	ACGTGAATTGATGAAACGTGTGAAGGATAAACGCGAGGACTTCGTTTCCGACTTAAGCCGACAGCCTGT	69	-	chr2L	8769901	8769970	8769901..8769970	CG9465-RB,	FBgn0032067,	CG9465,	1	.
CG3948-RA	CAGGTTCTGCAATCGGCACGTGAACAACTCAAATGGTCCATTCTGAAGTGATGTGAAATGGGGTGGCGG	69	.	.	.	.	.	CG3948-RA,CG3948-RC,	FBgn0040512,	zetaCOP,	1	.
CG13063-RA	TCTGCTCTCCTCGCCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTATGC	65	+	chr3L	16299829	16299894	16299829..16299894	CG13063-RA,	FBgn0036601,	CG13063,	1	.
CG9201-RB	TGGAGATTGTGCGCTTCTGGTTAATTTTCCTCATCAACAACCTGCACGCGCACATTATGGAGGCCGTG	68	-	chrX	15362937	15363005	15362937..15363005	CG9201-RB,CG9201-RC,	FBgn0026433,	Grip128,	1	.
CG13744-RA	GCGGACATAACCGTGTACCTGGGAGAGCTGGACACGCAGGATCTGGGTCACATACACGAACCGCT	65	-	chr2R	4903246	4903311	4903246..4903311	CG13744-RA,	FBgn0033363,	CG13744,	1	.
CG5263-RA	GGGAGTGCTCACCAACAACGGATCTAACGACAACCTGGTATTGGAACGCAATCAGCAGTCGCAGC	65	-	chr3L	8985635	8985700	8985635..8985700	CG5263-RB,CG5263-RA,CG5263-RC,CG5263-RD,CG5263-RE,	FBgn0016070,	smg,	1	.
CG4882-RA	GATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACCAGTTCTCTGGCTGCTTCC	65	-	chr2R	19769434	19769499	19769434..19769499	CG4882-RA,	FBgn0025336,	CG4882,	1	.
CG7158-RA	GCTACACTACACTGAAGGCCGCATATGAGCACGTGACGTCGAGAGCTCTGCAAAAAATCCCCTGAGC	67	-	chr3L	21667836	21667903	21667836..21667903	CG7158-RA,	FBgn0037116,	CG7158,	1	.
CG6499-RA	GCCGATCTAACGGAGCATCGGATTCGGCACTCACAAATCGGTTTATCGCGAGCCATCTCAGCGTT	65	-	chr3R	11073326	11073391	11073326..11073391	CG6499-RB,	FBgn0038309,	CG6499,	1	.
CG1373-RA	TGTCCATCAAAGGACTCTACCAGGATAACGCGCGTTTAATTATACACACTTATTTATTTACCAGCCATA	69	+	chr3R	26042567	26042636	26042567..26042636	CG1373-RA,	FBgn0000279,	CecC,	1	.
CG30184-RA	GCTCGGTGATCATATGCTTCATATCACTGATTGGAGCTTTCTACGCCGAGCGGCCGACGATGAAGCACG	69	+	chr2R	19451746	19451815	19451746..19451815	CG30184-RA,	FBgn0050184,	CG30184,	1	.
CG5557-RA	ATCCTTCCAACTTCCAAATTCATCATGAAACTTGTATACGATTCGGCCAAAATCAACTCCATCACTGCC	69	+	chr3R	14995749	14995818	14995749..14995818	CG5557-RA,	FBgn0010768,	sqz,	1	.
CG7056-RA	AAAGGCGGCCAGATCAGATTCACCTCCCAGCAGACCAAAAATCTCGAGGCTCGCTTCGCCAGCTC	65	-	chr3R	16902960	16903025	16902960..16903025	CG7056-RA,	FBgn0038852,	CG7056,	1	.
CG12768-RA	GCTGCAGCCCGAACCAAAGAGTAGTCTGCCAGTGACTATTCCCAGTCTAAGTCTCACCCTCAGCC	65	+	chr3L	22906543	22906608	22906543..22906608	CG12768-RA,	FBgn0037206,	CG12768,	1	.
CG32006-RA	ATGATAGCGCTGGGTATGATCGAAACGACGATATCTTAGAAAACCTTCTTGATGTTTGTGTTACGCCTT	69	+	chr4	173820	173889	173820..173889	CG32006-RA,	FBgn0052006,	CG32006,	1	.
CG40115-RA	CGCGTCGAGTTGCGAAAGTGCGTCGAAAAATTTTAACTTGCGGTCATACGGAATTTTTTTGTCGCGCGA	69	.	.	.	.	.				0	no match
CG32700-RB	ACGGATGAATTCGGTTGGACACTGGGCAATACAAACAACCAAATGCCTGGAAACTCCGAACCAACTCGA	69	-	chrX	9400921	9400990	9400921..9400990	CG32700-RA,CG32700-RB,	FBgn0052700,	CG32700,	1	.
CG5389-RA	TAGGCGAGGAGCACTACAATGTGGCTCGAGCAGTTCAGAAGACTCTGCAGGCTTACAAGTCGCTG	65	+	chr3L	16092591	16092656	16092591..16092656	CG5389-RA,	FBgn0036568,	CG5389,	1	.
CG11301-RA	GCTGTGGACAGTTTGCTATTCCTTGATGGAGCCATGAACTTTTGAACACCCCCACAAATGAAACTGGAT	69	+	chr2R	18299835	18299904	18299835..18299904	CG11301-RA,CG11301-RB,	FBgn0034726,	Mes4,	1	.
CG8083-RA	AGTTGGGTCGAAAGAATGTTACTCAGTTTTAGTTCCTTAAAGTTGTAGTTCGTGATAATTAGCTGATCA	69	+	chr2R	4969765	4969834	4969765..4969834	CG8083-RA,CG8083-RB,CG8083-RC,	FBgn0025709,	CG8083,	1	.
CG7377-RA	GAAGTACTCCTGTGTTTTGCTCCTTTTGGCCACTGTCGCCTGTTTCCTGGTGAGCCTGTCCAGTG	65	+	chr3L	11582796	11582861	11582796..11582861	CG7377-RA,	FBgn0036176,	CG7377,	1	.
CG13830-RA	TTGCAGGACAAAGAGGACAATAACCGGCACAACAACCACATCAATGCCCAGTACACTTTCACGCCCGAG	69	-	chr3R	18901575	18901644	18901575..18901644				0	no match
CG32800-RA	GCCCTTTGTTGCTATTTTATTCGTAGTCACTTAAGAATCCAATAAACACCGAATCCTTTCGAACTATAT	69	-	chrX	2099888	2099957	2099888..2099957	CG33548-RB,CG33548-RA,	FBgn0053548,	msta,	1	.
CG12626-RA	TCCAGAAGGCTCCCATCAATGCCATCATCGAGGATCTCAGCGACAAGCCCTGCTACTGTGACCAC	65	-	chrX	10931559	10931624	10931559..10931624	CG42339-RA,CG15204-RA,	FBgn0259241,	CG42339,	1	.
CG18628-RA	TGACGGCAACTTCATCGATCTTAAACCGCCTTTAACTTTTAATAAAGAGCAATATTGAACAAAGAACAT	69	+	chr3L	10633176	10633245	10633176..10633245				0	no match
CG1265-RB	CTCAGAAGCTGCAAATTTCGAATTTCGACGGTCGCTATGAGTGGAGCTCTCGGAGATGTGGTGTC	65	+	chr3L	4254778	4254843	4254778..4254843	CG1265-RB,	FBgn0035517,	CG1265,	1	.
CG14069-RA	TGAACACAGCGACCACAATTGCCATCGGATTGTTAATGTTCATCCCACTGATCCTGATGCAGCTG	65	-	chr2L	10910469	10910534	10910469..10910534	CG14069-RA,	FBgn0032315,	CG14069,	1	.
CG13676-RA	GCAGCGGCAATATGCTAGCGCCTATAATCCATTTGCCTATCAGCCAGCGTATCAATCACCAACATCCGC	69	-	chr3L	8135989	8136058	8135989..8136058	CG13676-RA,	FBgn0035844,	CG13676,	1	.
CG8487-RB	GCAGCAGCGGACATCTATCAGGAGTATGTGCAAAATCCGTACAACCTTACGTTGCAACAGCATCCCCAA	69	+	chr2R	8220776	8220845	8220776..8220845	CG8487-RB,	FBgn0033714,	garz,	1	.
CG6789-RA	ATTTTGTCAGCGGGTCAATGAATTGATTGCCAGTGGTGAACGCCAAAGGGATGAGATTGCGGCGG	65	+	chrX	5026307	5026372	5026307..5026372	CG6789-RA,	FBgn0029745,	CG6789,	1	.
CG10050-RA	CTGCGACAGGTGAAACTCATCGCCGTGGGTATAAGTGACTACATCATCCGTACACAGCCTACTGAAGGA	69	+	chr3R	3076108	3076177	3076108..3076177	CG10050-RA,	FBgn0037492,	CG10050,	1	.
CG10098-RA	CGCGAGAAAAGCACGGATAAAAATGACCAACGGTGACTGCTTTGTTGTTCTGCCCGAGAACTGTGCCGA	69	+	chr3R	2950359	2950428	2950359..2950428	CG10098-RA,	FBgn0037472,	CG10098,	1	.
CG5362-RA	AAGGTGACCGCCAATGGTACCGTTAAGTCCGTGGTGGATGCGATCAACGATAATGGCTACCTGCAG	66	-	chr2L	10394287	10394353	10394287..10394353	CG5362-RA,	FBgn0262782,	Mdh1,	1	.
CG11138-RB	GGCGACAACACACTCCCCGGATAATATCTGGCATCTAAAAACTCTCGACACTTCTCTGTTGGGGTCACA	69	-	chrX	12466399	12466468	12466399..12466468	CG11138-RC,CG11138-RB,CG11138-RD,	FBgn0030400,	CG11138,	1	.
CG31861-RA	TGAGCGTCGAAGAAAAGCAAGCCTTTCAAAGAATCGGCACAATTCAAGAAACTCCAACACACGTGCATT	69	+	chr2L	12162283	12162352	12162283..12162352	CG31861-RA,	FBgn0051861,	CG31861,	1	.
CG9338-RA	TCCGAGTGTGGAAAGGACATCAAGTCAGACAGTAGCCTCGTTTTGGATTGCACCAAGATGGCTCCACCT	69	+	chr2L	20865452	20865521	20865452..20865521	CG9338-RA,	FBgn0032899,	CG9338,	1	.
CG12460-RA	GGTGGACCAGAATATCAAGGAGGTGCAGGCAATTAAGGAGGCCAAGGAAATCAAGGAGGAGCCGGAAAT	69	+	chr3L	24527891	24527960	24527891..24527960				0	no match
CG5210-RA	AGAAAATGCTTGATCAAGAAATATATTTGTCCCATTTATATTTGTAATGTCATAAAGTGCCTCAGA	66	+	chr2R	12581184	12581250	12581184..12581250	CG5210-RA,	FBgn0013763,	CG5210,	1	.
CG5738-RB	TCCGCTGCGAATTAAGACCATCTAACGGTGAACCTTTCGGTCACTAGTCCAAATTAAGCCTCCTGCC	67	-	chr2R	14043559	14043626	14043559..14043626	CG5738-RB,CG5738-RA,CG5738-RC,CG5738-RD,CG5738-RE,CG5738-RF,CG5738-RG,	FBgn0022238,	lolal,	1	.
CG6664-RA	CTCTCGCACAGGGATACAGAAAAATCATGACTTATTCACACACTTTCACACGAAAACACACTATATTCA	69	-	chr3L	17006467	17006536	17006467..17006536	CG6664-RA,CG6664-RB,CG6664-RC,CG6664-RD,	FBgn0036685,	CG6664,	1	.
CG6656-RA	CCGACCGATTGCAAAACATAAGATGCCTTCCAGACTTTGTTGAAAGTGTGTGTCGTTCTGGGTTGTTGT	69	+	chr3R	17703332	17703401	17703332..17703401	CG6656-RA,CG6656-RB,	FBgn0038912,	CG6656,	1	.
CG18208-RA	GGGATGGCCGGTATCCCAGTGGATATACGCTTACGCACATCGTGATCGCCTCCATTATTGTGACGATCC	69	-	chr3R	14673740	14673809	14673740..14673809	CG18208-RA,	FBgn0038653,	CG18208,	1	.
CG16732-RA	ACATCCTGGGTATATTTCCCTACCGCCACATTTCACCCTTTTTTGTGATGCAGCCTTTGGTGCGGACTT	69	-	chr3R	19362265	19362334	19362265..19362334	CG16732-RA,CG16732-RB,	FBgn0039086,	CG16732,	1	.
CG12721-RA	CCTTTGTCATCAAACGGGGACTATTGAATAAGCACATTAACTGGCAGATTCTCGACAAGATCATGGCAG	69	-	chrX	11966315	11966384	11966315..11966384	CG12721-RA,	FBgn0030373,	CG12721,	1	.
CG32572-RA	ACATTGTAGGCCACAAAGTGAACTAATTATTGCAACATCCTGCGATTCTTATCTCTACTGCCAATCTTT	69	+	chrX	16620737	16620806	16620737..16620806	CG32572-RA,	FBgn0052572,	CG32572,	1	.
CG5165-RA	GGTTCCCACTGGATGGAAGTACTTCGGTAATCTCATGGACGCCGGAAGGTTGTGTCTGTGCGGAG	65	-	chr3L	16119859	16119924	16119859..16119924	CG5165-RA,	FBgn0003076,	Pgm,	1	.
CG9973-RA	CGAGAAGCTCACCGAGAAGAAGGTAAGTCTGCTCACTGGTTTTCCATTCTCAGATCCTGTCCCACCGAA	69	-	chr3L	2869401	2869470	2869401..2869470				0	no match
CG12373-RA	CGCAAGCCAGCACTGAATACGTGATCAACCGGAATCCACGGAACTTGGAAAGATTACGCATTGCCTACA	69	+	chr2R	8644125	8644194	8644125..8644194	CG12373-RA,	FBgn0026741,	mRpL18,	1	.
CG4452-RA	CTGTTCCAACTCCCTCCTTCCAAATGTAACCCAATCATCAGTTAGAAAATGTAATTCGAATTCAACTTA	69	+	chr3L	9363232	9363301	9363232..9363301	CG4452-RA,CG4452-RB,CG4452-RC,	FBgn0035981,	CG4452,	1	.
CG8136-RB	TGCACAGCGAGGTTCTGTTTCACAAGGAACTGCAGATCAAGGAGAACATGATCAAGGTGTACGAGGACA	69	+	chr3R	4548559	4548628	4548559..4548628	CG8136-RA,CG8136-RB,CG8136-RC,CG8136-RD,	FBgn0037616,	CG8136,	1	.
CR30298-RA	CGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCGTGAGTTCGAATTTCGCCGGGGCCT	69	-	chr2R	2957474	2957543	2957474..2957543	CR30298-RA,	FBgn0050298,	tRNA:CR30298,	1	.
CG9926-RA	CCAAAGTGGCTCGCAAAGAGGTCGTCGACTACGAGAAGAATCTGCATCGACTTGGAGTGGTCCAGCAA	68	-	chr3R	9776581	9776649	9776581..9776649	CG9926-RA,	FBgn0038190,	CG9926,	1	.
CG8850-RB	GGCACCTGGTCTGATGTTCCTGGTCCTCGTCTATATGCTCTTCAGCTACGAACCTCTGACGTACCGAGG	69	-	chr2R	8186763	8186832	8186763..8186832	CG8850-RB,CG8850-RA,	FBgn0033708,	CG8850,	1	.
CG5445-RC	AGGACCCCCCTTTCGTTACTCCTCCCACTATTCCCACTCCTTAATTTCGGTGTCAGACAGATCAGCTTT	69	+	chrX	17199130	17199199	17199130..17199199	CG5445-RB,CG5445-RC,CG5445-RA,CG5445-RD,	FBgn0030838,	CG5445,	1	.
CG12511-RA	CAGGATCAGTCCCGGGGGCAGCTAGAGGTCAGAGAAATATCCCTGGAGCCAGTGAATCTTAACCG	65	+	chr2L	5678982	5679047	5678982..5679047	CG12511-RC,CG12511-RB,	FBgn0031729,	CG12511,	1	.
CG30487-RA	TGACGGTCCCAAGGGTGGACAAACTACAGGATCTGGCTAAATCGATCCCAACGGATCCCGATACAGTCT	69	-	chr2R	8825339	8825408	8825339..8825408	CG30487-RA,	FBgn0050487,	CG30487,	1	.
CG5096-RA	GTTCTGGCCAAAGATGTCAAATGTGGCGGTCCGAACAAGTTAAACGATGTTACGCTGCTCAGAGTGGCG	69	+	chr2L	10384357	10384426	10384357..10384426	CG5096-RA,CG5096-RB,	FBgn0032235,	CG5096,	1	.
CG8421-RA	TGGCTGTGGAGACCCTGAAACTTTGGCCCAACAATGCAGTGGCTCAACTTCATTATGGACTAGCACTCA	69	+	chr2R	12003335	12003404	12003335..12003404	CG8421-RB,CG8421-RA,CG8421-RE,CG8421-RG,CG8421-RH,CG8421-RI,CG8421-RJ,	FBgn0034075,	Asph,	1	.
CG14430-RA	AGTGGTTCGAGCGATACGACATACCGGACATTCAACCCCAAAATTGTTCCAGTGTCCATGGCGCC	65	+	chrX	6880759	6880824	6880759..6880824	CG14430-RA,	FBgn0261284,	bou,	1	.
CG13788-RA	CAGGTGGTCCTGGTCATATTGGCGGTAGTTCTCCTGGATACCGTCCTTCTGACAACTGGCTTAGTTTGC	69	-	chr2L	7461716	7461785	7461716..7461785	CG13788-RA,	FBgn0045495,	Gr28b,	1	.
CG5083-RA	ACAAGCTCGTCACCTTCGCATAGGAAGCTGTCCACCCATGATCTACCAGCAAGTCTTCCCCTAAGCATT	69	+	chr3R	11792377	11792446	11792377..11792446	CG5083-RA,	FBgn0038390,	Rbf2,	1	.
CG18265-RA	AGAATTTGTTCTTTGGCGAGAAGAGTTGCCCAAAATGAGTTGATCGCTCCGAGAAGAATTGGGATCGGC	69	+	chr3L	17448213	17448282	17448213..17448282	CG18265-RA,	FBgn0036725,	CG18265,	1	.
CG32743-RA	GGGCTTTTGACATACACCACACATCAAAAATTTGGAGCGGAGAAAGACTACTACATTCAACATTGGGGC	69	+	chrX	6731360	6731429	6731360..6731429	CG32743-RA,	FBgn0052743,	Smg1,	1	.
CG7275-RA	AGCACACCAAGAAGAGCAAGAAGGTGCCCTACGTCAGCGAGAAAAAGAAGCATGTGCTGAAGGAGGA	67	+	chr3L	15493534	15493601	15493534..15493601	CG7275-RA,	FBgn0036500,	CG7275,	1	.
CG18814-RA	TCCACGAATTGGATATACCGAACCTGTGGAATCCCCAGTTAGATGATTGCGTATTCGTCTGCTTGAGCT	69	+	chr3L	16363872	16363941	16363872..16363941	CG18814-RB,	FBgn0042137,	CG18814,	1	.
CG18765-RA	CGGATAGGATCGTGCACTTTGGACCACCAGTCATCCAGGCAAAGCTGAAATCCAGCCACATATATGGCG	69	-	chr3R	7517057	7517126	7517057..7517126	CG18765-RB,	FBgn0042110,	CG18765,	1	.
CG12024-RA	AGTTCCCCAGTCCAAAGTAATCTCCGGGCAAGAACGAAATCTGAAATCTCCTATCCCAATCTCGACACA	69	+	chr3L	1858252	1858321	1858252..1858321	CG12024-RA,CG12024-RB,CG12024-RC,	FBgn0035283,	CG12024,	1	.
CG32708-RA	AGACCACCTTCTTCCAGAACAATCTCGACAAGAGCGAGTTCATCAGGAAGCAGGCGAAGAAGGCCAAGA	69	+	chrX	8980702	8980771	8980702..8980771	CG32708-RA,	FBgn0052708,	CG32708,	1	.
CG7896-RA	GCTGAAGCATCCACGACTCAAGAGCCTGGGAATCAGAGGTGATCGACTGAAGTCCATATCCTCTGGCA	68	+	chr3R	25815164	25815232	25815164..25815232	CG7896-RA,	FBgn0039728,	CG7896,	1	.
CG3918-RA	GGCCCCAAAACAACTTCTCCATGAACTCTTCCCACGGATTATGAGACGCGCAAACCGTAGACTTGTCCC	69	+	chrX	6419994	6420063	6419994..6420063	CG3918-RA,	FBgn0029873,	CG3918,	1	.
CG12698-RA	AGCGACTCTGCGACGAAATAAAGAAACCAGTATCTAGGAGATCCACCAAGGAATCAGCACGCCAACGGC	69	+	chrX	15901970	15902039	15901970..15902039	CG12698-RA,	FBgn0030721,	CG12698,	1	.
CG16852-RA	TGGCTGGAATGCTGAGCACAAAGATGTTCAGATTCCAAGGGACCAACTAACCCACAGGCAGATCAGCAA	69	+	chr2L	13540894	13540963	13540894..13540963	CG16852-RA,	FBgn0028942,	CG16852,	1	.
CG16788-RA	TGCGCATTCATGTCGGTCGGCTTACCCGCAACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCT	69	+	chr3R	5378903	5378972	5378903..5378972	CG16788-RA,	FBgn0037707,	RnpS1,	1	.
CG32793-RA	GGGCCTGAACTCTCCCTATCCCTACGCTTATGTCCAGGGTCAGACGAAGAAACAAAGGGTTCCCATCAA	69	+	chrX	2825446	2825515	2825446..2825515	CG32793-RA,	FBgn0052793,	CG32793,	1	.
CG10572-RA	GCCGCCAGGAGGACATAAAGACCAGTAATCCGTACCATCACGATCAGCTAGACCGCATCTTCAATGTGA	69	-	chr3L	9830868	9830937	9830868..9830937	CG10572-RA,	FBgn0015618,	Cdk8,	1	.
CG9336-RA	TCGAAAAGCAATTCCCACACTCGAAGTATTCGCGAAAATGGTGTCCGCTCTGAAATGCAGTTTGGCCG	68	+	chr2L	20859235	20859303	20859235..20859303	CG9336-RA,	FBgn0032897,	CG9336,	1	.
CG14363-RA	CGACTGGAGTTCATAATTTAGCGTTTATTTATGAGTTGTCAAGTTGCTTGGTACGTGACTGGTCG	65	-	chr3R	9613763	9613828	9613763..9613828				0	no match
CG9475-RA	CCACCAATCGTGCAGATACCTTAGATCCGGCTCTGTTACGACCCGGCCGTTTGGATCGGAAAATTGAGT	69	-	chr3R	5580879	5580948	5580879..5580948	CG9475-RC,	FBgn0037742,	Rpt3R,	1	.
CG16837-RA	TCCAGAAGTTCGAGGTTATCAGTAACTGAAACTCAGCGCAAAAGCACTCCAGTGGTAAAGAAGGCGGTT	69	+	chr2R	20362996	20363065	20362996..20363065	CG16837-RA,	FBgn0035009,	CG16837,	1	.
CG6519-RA	TTCCGCCGCTGCCGTGAATCCCGGAACCTACAAGCAGTACGCCATTCCCTCCTACGAGTTGGATG	65	+	chr3L	8721930	8721995	8721930..8721995	CG6519-RA,	FBgn0000355,	Cp15,	1	.
CG4347-RA	GCATCTTGGACCACTAAATCAAATCCTGTACAATTGGATATCGTCTCACTAACTGTAGTCTAATTGTCT	69	-	chr3L	9344790	9344859	9344790..9344859	CG4347-RC,CG4347-RA,CG4347-RD,CG4347-RE,	FBgn0035978,	UGP,	1	.
CG31960-RA	TGCCATCACCTCGAAGGAATTGGGAATGGTAATCCGAGCATTAGGTCGACAGCCCAATGAATCGGAGGT	69	+	chr2L	3785103	3785172	3785103..3785172	CG31960-RA,	FBgn0051960,	CG31960,	1	.
CG32834-RA	ACGCCAATGTACCTTGGTTCACAGGTTGGATTGCCGAGAACACCGAAGATGAGGATACAACCGCTTCGA	69	-	chr2R	18871005	18871074	18871005..18871074	CG32834-RB,CR43305-RA	FBgn0052834,FBgn0262997	CG32834,CR43305	2	.
CG6571-RA	ATAAGAAGCACCTGTACCCTATTTGTATTTTGAGCCACATTTCATCGATAGACGGACTATTTTCCTGGA	69	+	chr3L	20258558	20258627	20258558..20258627	CG6571-RA,	FBgn0004366,	rdgC,	1	.
CG11987-RA	TCCCGCGAACAACATTGACACCATTTCCCATTAATTTTCGCTCATTTTTCGCCAAGGCAATCAGACGTA	69	-	chr3R	4842846	4842915	4842846..4842915	CG11987-RA,	FBgn0015014,	tgo,	1	.
CG13661-RA	TGCAACAGCGTCTGACTCTGACCCATGAGGAGTCCCAGAAGAAATACGAAGTGGTCAAGAACTCCCTGC	69	-	chr3R	20995397	20995466	20995397..20995466	CG34110-RC,	FBgn0083946,	CG34110,	1	.
CG6835-RA	TATCGCAAGGTGCTGGCGCACGGATTCACCCAGATTGTTGCCTAGAGTTTTCATTTGCTGACGCT	65	.	.	.	.	.				0	no match
CG32631-RA	ATTTAAAAAATACAATTGAGCAACCAAACATGGCCAACATTCTAAGTTTTACCATCTTTATGGCTGCCA	69	+	chrX	13450552	13450621	13450552..13450621	CG32631-RA,	FBgn0052631,	CG32631,	1	.
CG5565-RA	AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCTGCATAGCCACAAGTTCGTT	69	-	chr2L	1355343	1355412	1355343..1355412	CG5565-RA,	FBgn0031335,	CG5565,	1	.
CG14157-RA	GGCGCCTTTGTCGATGAACACAGCTTTGCAATTGACGAAAGGCATATATAGTTTCAGCATGATGT	65	+	chr3L	10267639	10267704	10267639..10267704	CG14157-RA,	FBgn0036080,	Or67d,	1	.
CG9432-RB	GGGCTTGGAACTGATCGATGACGAATGCGACGTGTTCGGAATTCATATGGTCAAGATCCAGGATCCGCA	69	-	chr2R	2610307	2610376	2610307..2610376	CG9432-RB,CG9432-RH,CG9432-RI,CG9432-RF,CG9432-RJ,	FBgn0010482,	l(2)01289,l(2)01289,l(2)01289,l(2)01289,l(2)01289,	1	.
CG8602-RA	GCTTACGTTCACCCAGCTGACACCCTATGTGGGCATGATCATCATGGGACTGTCGTATTCCATGCTGG	68	-	chr3L	7320299	7320367	7320299..7320367	CG8602-RA,	FBgn0035763,	CG8602,	1	.
CG13176-RA	CAACCTAGGTTCTCTAGCTTAAAGCATACAAATTTCTAAAACGAATTCCAAATTCTGTGCCCAAG	65	+	chr2R	8069759	8069824	8069759..8069824	CG13176-RA,	FBgn0033692,	wash,	1	.
CG8089-RA	CCTCACTGCACATGGAGATTCCAACTGAAGTCTGCCCTCGATTCACATGTACTGCGAATCCATGAACGC	69	-	chr2R	11034126	11034195	11034126..11034195	CG8089-RA,	FBgn0033993,	CG8089,	1	.
CG30103-RA	TGTACTTTTGTCACCGATTTCTCGTTGTCTAGTCTTTCCACGTACGGATTGCGTCTCCATGGGGCATCA	69	+	chr2R	13383284	13383353	13383284..13383353	CG30103-RA,	FBgn0050103,	CG30103,	1	.
CG10130-RA	CGTTCTTAAGCCATGCATTTCGTAGCCAATAAAATACTTTCACCTCAACGAGCGTGAACAATGTCGACG	69	+	chr2R	10506817	10506886	10506817..10506886	CG10130-RA,	FBgn0010638,	Sec61beta,	1	.
CG3680-RA	GGGGCGGTGAAGATACCTCCTCGCATACGCTGGCTAACGATATGAAGGCGAACAACGGTAGCGAAC	66	+	chr3L	20804969	20805035	20804969..20805035	CG3680-RA,	FBgn0037027,	CG3680,	1	.
CG3201-RA	CAATGGAAGGAAGGAAAGCCAGAGTATCACGAAAAAGTATTTCTAAATTAAAGCTGATATGCGTCGGTG	69	-	chrX	5513330	5513399	5513330..5513399	CG3201-RA,CG3201-RB,	FBgn0004687,	Mlc-c,	1	.
CG6612-RB	CGGCAGGGTGTACAATATTGGCTTCAAGAATCCCAAAGTGCCTGGCAAAGATGATGTGACGGGGGAG	67	-	chr3R	6713570	6713637	6713570..6713637	CG6612-RB,CG6612-RA,	FBgn0042094,	Adk3,	1	.
CG11312-RA	CGTGACCCGTTTGGACTCGCTCCCTTAGTCGCTTATCCTTGCTGTATCCTTGCTGCTGGATGTAAACGA	69	-	chr2R	16709339	16709408	16709339..16709408	CG11312-RA,	FBgn0011674,	insc,	1	.
CG10658-RA	GCCTGGATAAACAGCGACCTCATGTACCATAAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTCCCGGC	69	-	chr2L	19967210	19967279	19967210..19967279	CG10658-RA,	FBgn0014000,	Hf,	1	.
CG5130-RB	CGACTTGGAGATCTTTGAGCGAACCTTGGTCACCAAGTTCCCGGAGATCATCAGTTACCACGACCTGCA	69	-	chr3L	20478409	20478478	20478409..20478478	CG5130-RA,CG5130-RB,	FBgn0037000,	CG5130,	1	.
CG10090-RA	CAGTGGGAGGCCATACTGGAGACTATTGATCCGAAGAGAGCGTCATCCACTCAAGATTTCGCACTGGCG	69	-	chr3R	8189785	8189854	8189785..8189854	CG10090-RA,	FBgn0038018,	Tim17a1,	1	.
CG30147-RB	ACGAATACGACGATCACTACTTTCTCACGGATCCTCGGGAGTTCATATACGAGTTCTATCCGCTGCAGG	69	-	chr2R	16496056	16496125	16496056..16496125	CG30147-RB,CG30147-RA,	FBgn0050147,	Hil,	1	.
CG9289-RA	AGACGGGACCCTACATGAAGATCGATCGGACTGTCAGTTTCGGGGACAATTACCTGGATGAGTACCGCA	69	-	chr2L	8681626	8681695	8681626..8681695	CG9289-RA,	FBgn0032058,	CG9289,	1	.
CG8859-RA	GGAGGAGATCAAGGATGCACTGGTCGAAAGTGGAGGTCAGGTGACGCTGAAGATGATCGAGTCACTGGA	69	-	chr2R	8076770	8076839	8076770..8076839	CG8859-RA,	FBgn0033696,	Cyp6g2,	1	.
CG10062-RA	CGGTGTTGATCGTTCGATGTCCTGGTTCACCTCATCATGGACTATCTTTGGCCTGTACTTGGCGCCCAT	69	+	chr2R	15265942	15266011	15265942..15266011	CG10062-RA,CG10062-RB,	FBgn0034439,	CG10062,	1	.
CG12643-RA	TGGAGGTGACCCATCAATCCACACAATCAGCCATCACCTGTAATCAGCCACTTCAATAGAGGACGCACT	69	-	chrX	10158793	10158862	10158793..10158862	CG12643-RA,	FBgn0040942,	CG12643,	1	.
CG30096-RA	CGCCCACATCAAGAAGTGCTTCAGCATCAAGAGACGAGGTCCTTTGTACAGGATTTATGGATATGCGGA	69	-	chr2R	12209135	12209204	12209135..12209204	CG30096-RB,	FBgn0050096,	CG30096,	1	.
CG7216-RA	AGAACAAGAGTTCAACCAGAGCGCAACCCAAAACCCACAAACAGCACCATGAAATTCGCCGTCGC	65	-	chr2L	7741346	7741529	7741346..7741357,7741475..7741529	CG7216-RA,	FBgn0014454,	Acp1,	1	.
CG5472-RA	AATTGCTTGGAAACAATACCACAACAAACATAACCTCAGACTCTTATGTTTTGCACTTTAATGAGCAAA	69	+	chr2R	19577760	19577829	19577760..19577829	CG5472-RA,CG5472-RD,	FBgn0262728,	Pal2,	1	.
CG11182-RA	CGCAATCCGGGGTTCCCTCAACCAGGAGTCGAGCTTATTGTTCTCCAAAATCACCACTGTCTCCGAGTT	69	-	chr2R	19771596	19771665	19771596..19771665	CG11182-RA,	FBgn0025334,	PHDP,	1	.
CG8531-RA	GCCGCACTCTTAGCCAAAAGCTGACGTTGAATGGAGGCACCAATCTGAACTTTCGTGACCAAGGTGTCA	69	+	chr2R	10144928	10144997	10144928..10144997	CG8531-RA,	FBgn0033918,	CG8531,	1	.
CG8475-RA	GGTCCTCATTTTGAGGTAAACGGTCTGAACGTAAACACGGCCTTGACGCAGCTATACCATCGCGCTGGT	69	-	chr2L	8192258	8192327	8192258..8192327	CG8475-RA,CG8475-RB,	FBgn0031995,	CG8475,	1	.
CG9988-RA	CACCACCCAAAGGACTCTCGCTGAAACCGTCCAAGAGGAAGCCAAGTGTCCTTATGTTCGGCATAGACA	69	+	chr3R	24462796	24462865	24462796..24462865	CG9988-RA,	FBgn0039591,	CG9988,	1	.
CG13953-RA	CGCCTATGCTCACCACCAATCGATGACGGCTATGTCGAACAACGGTATTATCTATCAGTCGGCGG	65	+	chr2R	5345633	5345698	5345633..5345698	CG42332-RD,CG42332-RE,	FBgn0259234,	Camta,	1	.
CG3959-RA	TAGGAACTTAACTAGCGAGCGATATACAAGTAGACTAATAGGAACCACGACAGACTTGGACGTCAGGGC	69	+	chr2L	9708328	9708397	9708328..9708397	CG3959-RA,	FBgn0011207,	pelo,	1	.
CG16781-RA	TGCCCTTACATACGGAGCATTCACTATCATCCAGGTGGTGGGTCAAGATCGCGCAATGCAGTTGATGGA	69	-	chrX	3357412	3357481	3357412..3357481	CG16781-RA,	FBgn0029661,	CG16781,	1	.
CG7076-RA	CTATCCGTTGGAGCACCAGTACTACGAGGAGAGCCATGGATATGAGCACCTGGCCCATCACGAAC	65	+	chr3L	8330726	8330791	8330726..8330791	CG7076-RA,	FBgn0035875,	Cpr66Cb,	1	.
CG30493-RB	TAACGTTGCCAATTTTCTGAATAGTTGGCTCTGTCCAATCGCTGACTAATCAAGCGCATGACCTTCGTG	69	+	chr2R	3590828	3590897	3590828..3590897	CG30493-RB,	FBgn0050493,	CG30493,	1	.
CG12030-RA	CGGGTTAGCACACGATAGCACTCAACGGTCAGCGATCTTTGGCATCTTCATCTACACCATCATCTGCAA	69	+	chr3L	648843	648912	648843..648912	CG12030-RA,CG12030-RB,	FBgn0035147,	Gale,	1	.
CG13672-RA	GAGACCAGCCAGTTTGTAAATGGACTGGATCTACAGGGACCGATTTTTCTCCATGAGCCACCGCA	65	+	chr3L	8247966	8248031	8247966..8248031	CG42330-RD,CG42330-RH,CG42330-RE,	FBgn0263219,	Dscam4,	1	.
CG18140-RA	GCGGCAAGCACCCATTACTCAGGACTCTTAGTCAGGAGCTCCTAGGCATTCCTGGACAAAAGGCTAAGG	69	-	chr2L	22892415	22892484	22892415..22892484	CG18140-RA,	FBgn0250907,	Cht3,	1	.
CG12923-RA	ACACTCGCACCTGGATAGTCACATCCCGTTGGTGGTGCTAATTTCCCAGACATTGCCCAATACGG	65	+	chr2R	5775856	5775921	5775856..5775921	CG12923-RA,	FBgn0033461,	CG12923,	1	.
CG1422-RA	TGGTGGCCAAAAGCCTATCACGCTACTCGAGCAGTGCACTAATCTCATGCAGCAGGAACGCTACC	65	+	chrX	7789568	7789633	7789568..7789633	CG1422-RA,	FBgn0040087,	p115,	1	.
CG12113-RA	CGGCGGAGTACCTGCAGATGATTCTCAGTCACATCGAAGAGATCTTCACCATGACTGACGAGCGCTTGG	69	-	chrX	8450660	8450729	8450660..8450729	CG12113-RA,	FBgn0026679,	l(1)G0095,	1	.
CG13087-RA	CGAACAGGACGAGCGCAGTGGTGGAAAGGTTCGCCAAATTCTCAGCCATTTACACGCTCCCAGTG	65	+	chr2L	8476912	8476977	8476912..8476977	CG42840-RE,	FBgn0262029,	d,	1	.
CG12535-RB	GTTCGAACTGCAGCATATTACCACTCGGATTCGCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAA	69	-	chrX	3287376	3287445	3287376..3287445	CG12535-RB,	FBgn0029657,	CG12535,	1	.
CG9890-RA	CCTGGAGGAGAACTTGAATCGGTTAATGTGCCTCTACTGCGAGAAGATCTTCAGGGATCGGCCCACGC	68	-	chr2R	18951047	18951115	18951047..18951115	CG9890-RA,	FBgn0034814,	CG9890,	1	.
CG14249-RB	CAGCAGGTGACACTGAAGGATGTCCAGTTCGATCTATCCGGCCAATTCTACTGCGAGGTCTCCAC	65	-	chr3R	22488991	22489056	22488991..22489056	CG42242-RD,	FBgn0250908,	beat-VII,	1	.
CG8541-RA	GTGGACACCCCCTACTCCAGTGTGAGGAAGAGCGACACGAGGATCCAGAACAATGTATACACTCCTGCT	69	+	chr3L	7464877	7464946	7464877..7464946	CG8541-RA,	FBgn0035788,	CG8541,	1	.
CG4511-RA	GGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAAAAGTCGCCCAACATTGTTTGCCACTTTTACCGCGA	69	+	chr3R	6681038	6681107	6681038..6681107	CG4511-RA,CG4511-RB,	FBgn0037843,	CG4511,	1	.
CG5747-RA	CTCTTCAAGCGCAAGGTCATCAACGGCTGGTTTCCGCTGCAAAGTAATGCACATCCATCGCAACG	65	-	chr3L	8899539	8899604	8899539..8899604	CG5747-RB,CG5747-RC,CG5747-RD,CG5747-RE,CG5747-RF,CG5747-RI,CG5747-RJ,	FBgn0035935,	mfr,	1	.
CG6621-RA	CGCCACCAATGAAAAAAACAGCAGTCTCATCTAGAAAGTCAAGCTTTGACAATGTGGGACCCAGCACAT	69	-	chr3R	6716409	6716478	6716409..6716478	CG6621-RA,CG6621-RB,	FBgn0037855,	CG6621,	1	.
CG3996-RA	AGCAGGGGAAGGAGTATTCATAGATCTGGAGACTATGCACCTTCGATTAGGGTCACCTCCGAGCACCGA	69	+	chr3R	6074463	6074532	6074463..6074532	CG3996-RA,CG42795-RB,	FBgn0261928,	CG42795,	1	.
CG30342-RA	CGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGAGTTCAAGTACGTTCGAGCATTGGGAGCCT	69	+	chr2R	5031876	5031945	5031876..5031945	CG30342-RA,	FBgn0050342,	Prp38,	1	.
CG7242-RA	TCCGTGGCGATAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAGGACTG	65	+	chr3R	8788518	8788583	8788518..8788583	CG7242-RA,	FBgn0087021,	Spc25,	1	.
CG9427-RA	ACCCGTTTACGAGGAGTTCGGGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCGGA	69	-	chr3R	5451547	5451616	5451547..5451616	CG9427-RA,	FBgn0037721,	CG9427,	1	.
CG8964-RA	TCCGAAATCCTCGATTACCATCAAGGAACAAAGTTCGTTGCAATTGCCCTGTGACTACCAACTGCCGGA	69	-	chr2R	7912140	7912209	7912140..7912209	CG8964-RA,	FBgn0033674,	CG8964,	1	.
CG3902-RA	CCGTTATCGGTTCTCACCATGTTAACGTAGCATTTACCACTTAGTTGATTCTGTTATGCATATTGTATA	69	-	chr3L	18886253	18886322	18886253..18886322	CG3902-RA,CG11637-RA	FBgn0036824,FBgn0036822	CG3902,CG11637	2	.
CG4875-RA	GCACCCACTTCAATGGAAACCAAGTCCAATCCGACACCAGATGGAGAAAACCTCGGGTAGCAGCCG	66	+	chrX	16779489	16779555	16779489..16779555	CG4875-RA,CG4875-RB,	FBgn0030801,	Rcp,	1	.
CG6527-RA	GATGCGGCATTTTCACCCTTCAGACCAACAGACTGGAGTGTCAATTATCCCGCCCGAGCATTTTGCC	67	-	chr3L	10551378	10551445	10551378..10551445	CG6527-RA,	FBgn0036085,	CG6527,	1	.
CG5725-RC	TTGTAAATGCATGAAATTACGTATGTATGGATAAAGTGCCTGCTAGAAAGCAACGAATTTTGGCC	65	+	chr3L	20384470	20384535	20384470..20384535	CG5725-RD,CG5725-RB,CG5725-RA,CG5725-RC,CG5725-RE,CG5725-RF,CG5725-RG,	FBgn0011205,	fbl,	1	.
CG8186-RA	TTAGTCCAGCCAATTACCATCCGAAAAAAACAGCAAAATGTCCGGAAAAGATAGGCTACCGATTTTCCC	69	+	chr2R	11429004	11429073	11429004..11429073	CG8186-RA,	FBgn0022097,	Vha36-1,	1	.
CG4653-RA	GAACTACTCCAGTTCGGATGCAGTTGGCTCTAATGACTTGGCCTTGCTGGAGCTGGAAACGTCGG	65	+	chrX	16598740	16598805	16598740..16598805	CG4653-RA,	FBgn0030776,	CG4653,	1	.
CG13005-RA	GCACGAATTGCACGAGTTTTGGGCATACCCGAGGGTCAGTATGCGTTGGATATGTCCGCCATGGA	65	+	chrX	16698878	16698943	16698878..16698943	CG13005-RA,	FBgn0030794,	CG13005,	1	.
CG14133-RA	TCAAGAAGGAAATGCAGGGCGTCTATCAGCGCACCAAAGAGTTAAAGAAACGAGCCGCTAACGTG	65	-	chr3L	11683190	11683372	11683190..11683208,11683325..11683372	CG14133-RB,CG14133-RC,CG14133-RD,	FBgn0036192,	pallidin,	1	.
CG13779-RA	AATAGCGTCAAAAACATTGTTTTATCGCCGTTGGAATTAATAAAAGCACACAAAATGTCTGCCCCAGAT	69	+	chr2L	7064031	7064100	7064031..7064100	CG13779-RA,	FBgn0040954,	CG13779,	1	.
CR32957-RA	CTCTTTCTTTTTAGATAATGCTGAAACCCGAATTTCTCTGACAGAAACCCTACGTAAGAAGGATTTCCA	69	+	chr2L	20648405	20648474	20648405..20648474	CR32957-RA,	FBgn0259936,	Uhg3,	1	.
CG4076-RA	CCTCCGACGAAGGACCGGATGAAGAGCCCTTCCAGCGAGTGACCGAAACTATAACAGCGTCAGATC	66	-	chr3L	18740048	18740114	18740048..18740114	CG4076-RA,	FBgn0036812,	Nufip,	1	.
CG10013-RA	GCAACTCCATGCCCCAAACAGGAGATGAAGAATTAGCTCCAACACCCAGATCCACTACCCCCAGAGGAA	69	+	chr3R	8150366	8150435	8150366..8150435	CG10013-RA,	FBgn0038012,	CG10013,	1	.
CG9327-RA	AGCGTGTGGACAATAAGACCGTATACAGTGTCCTGGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGT	69	+	chr2R	16883399	16883468	16883399..16883468	CG9327-RA,	FBgn0261394,	Pros29,	1	.
CG8032-RA	GTCGAGTGTTCCATGCAGCCCATGTGATATGCACCATACCGCTAGGCGTACTGAAAAACACCCATCGC	68	+	chr3R	4491937	4492005	4491937..4492005	CG8032-RA,	FBgn0037606,	CG8032,	1	.
CG5175-RB	CGTCGGGTCGTTTTTCGTCAGGAAAATCACCGTTCTGTCACAGATTCCTTGCTGGTTGTCTCCTCGCGA	69	+	chr3R	12910264	12910333	12910264..12910333	CG5175-RA,CG5175-RB,CG5175-RC,	FBgn0038476,	kuk,	1	.
CG5053-RA	GGCCAATTGCGAAACAGAGCTGCTACAATGCAAGAACAAAATGCGCTTGCTGATGGATGACATTGAGCT	69	+	chr3R	21489871	21489940	21489871..21489940	CG5053-RA,	FBgn0261986,	RASSF8,	1	.
CG18041-RA	ACGAAAATGTCAGTTGGTTTTGTACTCAGCCATTGTAGTTTTTGGTGCATTCGGGTGTAAGGAACCCCT	69	-	chr3R	25680438	25680507	25680438..25680507	CG18041-RA,	FBgn0039710,	dgt1,	1	.
CG30395-RA	CCCAAATTTCTTTGCATTCCACCATTTGTGGCCATTAATGGAAGCTGCCTTATTCCAACCCCCAAAGAA	69	+	chr2R	17653109	17653178	17653109..17653178	CG30395-RB,	FBgn0050395,	CG30395,	1	.
CG1322-RB	TTTCGGTTAAGCCAGGCTGGGTTGACATTGCACAACCGCTCGAAAGGAATTTTCCACCCACAACC	65	+	chr3R	26612935	26613000	26612935..26613000	CG1322-RB,	FBgn0004606,	zfh1,	1	.
CG31901-RA	TCCTCCACCACAAATGCAGGTTCAACCGCCAGTTCTACAACTTCTTCGCCATCCATAAGCACTTCAACT	69	+	chr2L	8354680	8354749	8354680..8354749	CG31901-RA,	FBgn0051901,	Mur29B,	1	.
CG5187-RA	CTTGTGGATTTGGCATGTACCTACTTTGGGAGACCCCATGAGTATGGAGGAGCGATTCAGGCCTCACCT	69	-	chr3L	9006205	9006274	9006205..9006274	CG5187-RA,	FBgn0035956,	Doc2,	1	.
CG12811-RA	AACTTGATGGTGGACTGTGTGAAGCTGTCCGTTCAACTGGAGACGCGTATTTCGGACACGGAGCA	65	-	chr3R	5873184	5873249	5873184..5873249	CG12811-RA,	FBgn0037779,	CG12811,	1	.
CG5948-RA	CCCTACAACTCGGACATTAGGGTGACGATCAATGTGACTGGATTGCCACCCGGTAAACATGCCCTGC	67	+	chr3R	21722290	21722357	21722290..21722357	CG5948-RA,	FBgn0039386,	CG5948,	1	.
CG13847-RA	CTCTACAGAAATCGAACGAAAGCCCCCAGGTTCAGCCCTCCAATCAGTTCAACTTTGCACCGGCC	65	-	chr3R	18251846	18251911	18251846..18251911	CG13847-RB,	FBgn0038967,	CG13847,	1	.
CG1906-RE	TAGTAGGCGATGAAAATCAAGTGGAAAACGATCGTTTTTTCTTCTTAAACTTTTACTTACGGCAGACAC	69	+	chr3R	25417707	25417776	25417707..25417776	CG1906-RA,CG1906-RB,CG1906-RE,	FBgn0086361,	alph,	1	.
CG5599-RA	TTCCTCCCGGTACTAACGTTCCACATCCCACACTATTGGCGAAAACGCCTAGTGCTGCTCCAAGT	65	+	chrX	14981364	14981429	14981364..14981429	CG5599-RA,	FBgn0030612,	CG5599,	1	.
CG5569-RA	TTCAGCAAGGCCTACGACCACGACGGGAAGACCAAAGTCACCATCTTCAACACCGAAACGGATCT	65	+	chr2R	19753144	19753209	19753144..19753209	CG5569-RA,	FBgn0034919,	CG5569,	1	.
CG9302-RA	GGACCGCACAGAGCTGTGATACGCTGTTGCAAAGTATAACGATGCTTCTCCCACAACACTTTGCAATCT	69	-	chr2L	13376662	13376731	13376662..13376731	CG9302-RA,	FBgn0032514,	CG9302,	1	.
CG31908-RA	TCCCAAGTGACGCCGATGTATAATAACTACAACAGCTACTTCCCGGGACTGCACAATCAGCCTGGCCTT	69	-	chr2L	7025586	7025655	7025586..7025655	CG31908-RA,CG31908-RB,	FBgn0051908,	CG31908,	1	.
CR31273-RA	TGCAACGAAATGGGTCCATGTGTTAAAGATGTGCTTGCCAAGTAAAAAAAACCGAAAAGTAGAGGGGGT	69	-	chr3R	12598650	12598719	12598650..12598719	CR31273-RD,CR31273-RA,	FBgn0020556,	bxd,	1	.
CG32944-RB	CCTCCCGAAGACCACCTCAACTGTGATCCTTGCCTAGAACTGGAGGAAATGATTGTAGAATCGCGGCCC	69	-	chr3R	233536	233605	233536..233605	CG32944-RE,CG32944-RF,	FBgn0052944,	CG32944,	1	.
CG10616-RA	AGGGACTCCCGGATGATACGCACTTCAACAATTGCAAGATGGACGCTGATTGCATAGACGATTCTGGGA	69	+	chr3L	12467087	12467156	12467087..12467156	CG10616-RA,	FBgn0036286,	CG10616,	1	.
CG6608-RA	GGCCCCCACACTCCTTAAGTCAAGCATGACGACGGCCCTGTACTTCAGCATTTACGATAAGCTCAAGCA	69	-	chr3R	6705740	6705809	6705740..6705809	CG6608-RB,CG6608-RA,	FBgn0037852,	Tpc1,	1	.
CG6582-RA	ACGGAGGAGAACCAACTGAAGCAGACGGCACTGAAGACGACATCAAACATCAACATTCTGATCCGGGAT	69	-	chr2L	17475972	17476041	17475972..17476041	CG6582-RA,	FBgn0027885,	Aac11,	1	.
CG12073-RA	AGTGCGTATCTCTGTATATGTGCACCCCCTGAAACTTGCAGCAATGTGCGAATTGTAGACGACTCCTCT	69	-	chr3R	26795070	26795139	26795070..26795139	CG12073-RA,	FBgn0004573,	5-HT7,	1	.
CG13942-RA	CAGTACACCCAATATGGGGGAGCAGAGTCCCACGAACAGCATCGATTCCTACCGCAGCAACCATC	65	+	chr2R	10215813	10215878	10215813..10215878	CG34379-RD,	FBgn0085408,	Shroom,	1	.
CG8127-RB	GGCGGGAGTTGAATTAAATTATTTTACCATTTAATTGAGACGTGTACAAAGTTTGAAAGCAAAACCAAC	69	-	chr3L	17946575	17946644	17946575..17946644	CG8127-RB,CG8127-RC,CG8127-RA,CG8127-RD,CG8127-RE,CG8127-RF,	FBgn0000568,	Eip75B,	1	.
CG6698-RA	ATCCTATGAGCTGATGGTCTACGCCAACGGAAGCATCACCCTGTACGCTCAAAACCTCCAGCTGG	65	+	chr2R	18016598	18016663	18016598..18016663	CG6698-RA,CG6698-RB,	FBgn0029147,	NtR,	1	.
CG30153-RA	TCGTGTTTCGTGCTTAAATATAGCCTTAGCCCATCTATAGATCTCTCTGTATGTCCTGTATGCGCTAGC	69	+	chr2R	16485215	16485284	16485215..16485284				0	no match
CG12763-RA	GCCACGAGATTGGACTGAATGGAGGATATGGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGA	69	+	chr2R	14753518	14753587	14753518..14753587	CG12763-RA,	FBgn0004240,	Dpt,	1	.
CG12490-RA	GTTTTGGGGTGTCTTTGTATCTGGTGTCTGCAGTGCATTGACCCCGCTCTTCATCGGTTTTGGCG	65	+	chr2R	18722827	18722892	18722827..18722892	CG12490-RB,	FBgn0034782,	CG12490,	1	.
CG30440-RA	GCGCCAGGAAGTTTATACGTTGCAAGCATCGACAATCGGTGTAAAAGAAATGTGGGTTGCCGAGATTAA	69	-	chr2R	1362476	1362545	1362476..1362545	CG30440-RA,	FBgn0050440,	CG30440,	1	.
CG13162-RA	CACAAGCGGATCCTGTGCCTTCGAATACTCCGCAACATGTGCTTCTTCAATGGTAATCGCCCCCG	65	+	chr2R	8238196	8238261	8238196..8238261	CG13162-RA,	FBgn0033718,	ana3,	1	.
CG11257-RA	GCAGCCTCCGGAAATAGTGCCACGCTTTGATTGGATTCAGCAGAGGAGCGAACTTACCCTGATCTTCTA	69	+	chr2R	15278227	15278296	15278227..15278296	CG11257-RA,	FBgn0034442,	CG11257,	1	.
CG6701-RA	AGTCCAGGACGCCAAGATCTTCTACAGCAAGAATGAGCTGCTTAACCTCGGGAATGAGTGTCAGCGGAA	69	-	chr2R	9861827	9861896	9861827..9861896	CG6701-RB,CG6701-RC,CG6701-RD,	FBgn0033889,	CG6701,	1	.
CG12362-RB	GCCAAAATGGATGACATGCAGGAGGAGATGAGCTGGATTGAGGTTCAGTTTCTGCGTGATGCCGTCGAT	69	+	chr3L	10407309	10407378	10407309..10407378	CG12362-RB,CG12362-RA,	FBgn0036082,	CG12362,	1	.
CG12892-RA	AGCAAGCTACTCCCATTGCAGTGAGGAGAACTCCACGCGTACTCATCGAAATGCCGGTGAACTCG	65	-	chr2R	6353965	6354030	6353965..6354030	CG12892-RA,	FBgn0033526,	Caf1-105,	1	.
CG32754-RA	TCCTTGGGTACAGCGACGGAGAATGGTAGCTACTATAGCTATCGATTGGGAACCTACGATGGCTGGCGC	69	-	chrX	6094948	6095017	6094948..6095017	CG32754-RA,	FBgn0040069,	vanin-like,	1	.
CG8573-RB	GCCGCATGCGAGAGTACTGCAAACTGCTCTTTACCGTGGTCATTCACAACGATTCCATCAAGTCGCTGC	69	-	chr3R	10130816	10130885	10130816..10130885	CG8573-RA,CG8573-RB,	FBgn0003567,	su(Hw),su(Hw),	1	.
CG9511-RA	GGCTTGGCATATCAGACGAACTAACCGCATCACCGACTTGACTACTGACCCCAATCTAAGCCCCTTCGT	69	-	chr2L	6397166	6397235	6397166..6397235	CG42369-RA,	FBgn0259715,	CG42369,	1	.
CG18005-RA	GGACGGATGGCCTATGTGATCGACCTGGATGACGAGCTAGGGGAGTCGGATATTCCAACCACACTG	66	-	chr3R	4889880	4889946	4889880..4889946	CG18005-RA,	FBgn0037660,	CG18005,	1	.
CG13531-RB	CGCTGCACTTCCTCATGTACAAAGAGTTGGCGGAGATGTGGACTACGGAGGCCCAAGAGATTGTTACCA	69	-	chr2R	18736245	18736314	18736245..18736314	CG13531-RB,	FBgn0034786,	CG13531,	1	.
CG5269-RA	AGATCTACCATCTGCAATCAAAAGTTCCAGCCTACATAAGACTATTGGCACCCAAGGGCTCATTGGAGA	69	-	chr3R	15044960	15045029	15044960..15045029	CG5269-RA,	FBgn0262468,	vib,	1	.
CG4269-RA	ACCTCGTCCGGGTACTTAGCGAATAGCGAATTGACCGTGGAGTGGATAAAGTGTTAGTGGAGCAACAGA	69	+	chr2R	18486874	18486943	18486874..18486943	CG4269-RA,	FBgn0034741,	CG4269,	1	.
CG3047-RA	GATGCCCGGATATCCAAATCAGTGGCCACAATTACCAGGTTATCCCCAGCAATTACCACCGCCGTT	66	+	chr2L	4941158	4941224	4941158..4941224	CG3047-RA,	FBgn0003372,	Sgs1,	1	.
CG32230-RA	CACTTGGAATCGCACATCAAATCCCGAACCATGGCAAGAGTACAAAGAAAAGCAATACAAGTTTTATTC	69	.	.	.	.	.	CG32230-RA,CG32230-RB,	FBgn0052230,	CG32230,	1	.
CG18594-RA	GCCGGCAACTTCTTCCAGGCCCAATACGATGACTACGTGAAGACCCTCATCGAGACGGTCCAGTAATCT	69	+	chr3R	18292277	18292346	18292277..18292346	CG18594-RA,	FBgn0038973,	Pebp1,	1	.
CG13477-RA	TCTCCGAGCAGGTATTCTCGAACATTCAGGAGCGTCTGAACCGAATCATTAATCGCATTAGCATGGCCA	69	+	chr3L	14684655	14684724	14684655..14684724	CG13477-RA,	FBgn0036438,	CG13477,	1	.
CG5424-RA	TTTTTTTTCGCCAAAACGAATATTGTTATTCCTAGTGGGCAGTACAGTATCTCAAGGCGAATCAAACGT	69	+	chrX	17174648	17174717	17174648..17174717	CG42864-RF,CG42864-RB,CG42864-RA,CG42864-RD,CG42864-RC,CG42864-RG,CG42864-RH,CG42864-RI,CG42864-RJ,	FBgn0262111,	f,	1	.
CG14789-RA	CGACAGCGAGGAAGATTCCGACCCGTACTGATCCATCTGTAGCTCCCACCTGACATCTCAAGACCTAGT	69	-	chrX	1358501	1358570	1358501..1358570	CG14789-RA,	FBgn0027791,	O-fut2,	1	.
CG30010-RA	TCTCCAAGCATATCTTGCCGTTACGTACAATATAACCAAGGTCAATCTCCGGAGCCAAAAATTCGCGAA	69	+	chr2R	5751369	5751438	5751369..5751438	CG30010-RA,	FBgn0050010,	CG30010,	1	.
CG10723-RA	AGAGCGATATGGATATTCTGGCCAACTCCATGTACGAGGACGATCCCAATGGCAACCTAGCGCCC	65	+	chr2L	20100956	20101021	20100956..20101021	CG10723-RA,CG10723-RB,	FBgn0032850,	Kua,	1	.
CG32795-RC	TATTCCTGTTGGTCTGGTACTACTGCACCCTGACCATTCGCGAGTCCATCCTCAAGGTGAACGGC	65	-	chrX	2678435	2678500	2678435..2678500	CG32795-RA,CG32795-RB,CG32795-RC,	FBgn0040384,	CG32795,	1	.
CG4213-RA	CGGCCCAAATCCTCAGCTGGATCAGGATCGAAGCTCCACTAGCATGTCGCAGACTTTAGAGCAACGATT	69	-	chr2L	397442	397511	397442..397511	CG4213-RA,	FBgn0031251,	CG4213,	1	.
CG32742-RA	ACCCAGAGCCAGAAGAAACTCGTCCAATGCCCCACTAGGCCACATTTACTTACCTCAAGCCGCAG	65	+	chrX	6553312	6553377	6553312..6553377	CG32742-RA,	FBgn0028360,	l(1)G0148,	1	.
CG4734-RA	AGCACGCCACCTACTTCTGTGGCTCCATTAAGAAGGATGTGGTCATATCGAGCAACAATCCCGGTCCTT	69	-	chr2R	9184816	9185073	9184816..9184834,9185022..9185073	CG4734-RA,	FBgn0033826,	CG4734,	1	.
CG14406-RA	GCTGCAAGCAGAACCGTATTTGGTGATGATCAATTGCCCATCAACGATCCATCGGATCTAAGTGCTGGT	69	-	chrX	14804336	14804711	14804336..14804350,14804656..14804711	CG14406-RA,	FBgn0030595,	CG14406,	1	.
CG7888-RA	GCGAAGGCCCCAAATGTTTCCGGGTTTTTGCTCCCTACATTGGCACAGTGGTTAACACCTTCCTG	65	+	chr3L	11051157	11051222	11051157..11051222	CG7888-RB,CG7888-RC,CG7888-RA,	FBgn0036116,	CG7888,	1	.
CG30001-RA	TGCTGAATCTGCGTTGAAGCTAACCTTGATACTGACAAGCGCTTTGGGGAATCTCTATTCCGGCCTCGT	69	-	chr2R	5709718	5709787	5709718..5709787	CG30001-RA,CG30001-RB,	FBgn0050001,	CG30001,	1	.
CG1358-RA	CGACCTTTAGGCCAAGTGACAAACGCAAGGAAGTTACAATCTTCCACCCAGAGTCAATTGAGATGGCCA	69	-	chr2R	3483059	3483128	3483059..3483128				0	no match
CG3032-RA	CGAAGCCCATGTGAGAGCAGTCCACTTAAAGCTGAAACCCTTTCCCTGTCACCACTGTCCGGAGAG	66	-	chrX	6906456	6906522	6906456..6906522	CG3032-RA,	FBgn0029928,	CG3032,	1	.
CG7075-RA	TTAGATGTCGAGTTTATGCTCGGAAAACGGCCAACTCTATATTGGAGAATCGTGTGGCAGGTCGTCACA	69	+	chr2L	7713396	7713465	7713396..7713465	CG7075-RA,CG7075-RB,	FBgn0031934,	Ntl,	1	.
CG14112-RA	GGGAAAGAAACATTCCGACAAACCACACAAGGTGAAGACCCACGATCCGCTCAAGAAACAAAAGAAGC	68	+	chr3L	13371774	13371842	13371774..13371842	CG14112-RA,	FBgn0036349,	SNCF,	1	.
CG14444-RA	GCCTCTACTACAACGGCGATTACTTTCAAGCGGAGGATATCTTCTCGTCGACGCTGTGTGCCAATCCGG	69	+	chrX	6492128	6492197	6492128..6492197	CG14444-RA,CG14444-RB,	FBgn0029879,	Apc7,	1	.
CG1856-RA	AGCCGCCATGTTGAGCCTGCAACAAGACGTAATCATCAAGGATGAGATACAGATCTCTCCGTCGCCCT	68	+	chr3R	27560070	27560138	27560070..27560138	CG1856-RE,CG1856-RB,CG1856-RA,CG1856-RG,	FBgn0003870,	ttk,	1	.
CR33315-RA	AGTCTGGATCTGTCTGGACCAGTCTGGATCAGCTCGGAGTCACTAGATCAGCATCGGGATGGACC	65	-	chr2L	19075100	19075165	19075100..19075165	CR33315-RA,	FBgn0053315,	CR33315,	1	.
CG1314-RA	ATGGCTTGTCCGCTGAGCAATTGCGACTTGATGTTCAATCCTGAGCAGCTCCTAAGTCACTGCCTGAT	68	-	chrX	20739878	20739946	20739878..20739946	CG1314-RA,	FBgn0031134,	CG1314,	1	.
CG31869-RA	GGTGGTGGCGACATCGATCTCTACCAGGATAAGTCTTCTACCACCGAGGAAATGATGGCGTCCGG	65	-	chr2L	10773434	10773499	10773434..10773499	CG31869-RA,CG31869-RB,CG31869-RC,	FBgn0051869,	CG31869,	1	.
CG4260-RA	CGGGCAAGCAAGGAGACCGTAACTCGGGAAATCTGCGATCTGTTGACGGATCAATTCTAAGCCACAACA	69	-	chr2L	409378	409447	409378..409447	CG4260-RB,CG4260-RA,	FBgn0015567,	alpha-Adaptin,	1	.
CG11475-RA	ACTGACAGCTGGAACTCGTTCCTCAAGGGTCTTGGAGAGGACAGAAGGCAGTGGTTTTCGGCAATT	66	-	chr2R	17958252	17958318	17958252..17958318	CG11475-RA,	FBgn0034687,	CG11475,	1	.
CG5638-RA	TAATGAGCTTATGTGATGTTTAGACAGGGGGAGTAGGCGATCAGAGCAGGGAATGGATTAGTTAGCCTA	69	-	chr3L	12158380	12158449	12158380..12158449	CG5638-RA,	FBgn0036260,	Rh7,	1	.
CG14883-RA	CTCACCCAACGAGAAAAGATACTTCCAAAAGACCATGAAGATCCAGTACCTTACAGACTCGTTGCGGTC	69	+	chr3R	12283288	12283357	12283288..12283357	CG14883-RA,	FBgn0038432,	CG14883,	1	.
CG15650-RA	GCCCGGGGTCTTTGACTTCTCCAATGTGGATCTGGTGAACTTCCAGTACTTCAAGAACCTGGCATCGC	68	-	chr2R	16865525	16865593	16865525..16865593	CG15650-RA,	FBgn0034565,	CG15650,	1	.
CG31447-RA	ATGTCTGGAACATCGACCTCTGAACGCTCCAACTCCGAAGACAGCCCGTTGAATCCCTGCCTAAC	65	.	.	.	.	.	CG31447-RA,CG31274-RB,	FBgn0043069,FBgn0051274,	MESK4,CG31274,	2	.
CG10546-RA	GCGCACTTCCTCACCTACGAGTGCTTGATGGAGGATCAGGAAACACAGATCACTGGGCTAACGCATG	67	-	chr3L	5777065	5777132	5777065..5777132	CG10546-RA,CG33718-RC,CG33718-RD,CG33717-RB,CG33717-RA,CG33717-RC,CG33717-RD	FBgn0035636,FBgn0044419,FBgn0260458	Cralbp,Pmi,PGRP-LD	3	.
CG11608-RA	GGGACCCGGTACTCCAGGAAGCATCTCAAACTCAAGGCCTGGCTCTTGCAGTTTTGGCGTTTTAG	65	+	chr3R	8464706	8464771	8464706..8464771	CG11608-RB,	FBgn0038069,	CG11608,	1	.
CG30049-RA	TCCGTCCGCTCAAGGATTACGCCGTAAACCTGACCGGACTAACATCAGTGGATGGATACTGCGATAGGT	69	+	chr2R	8245840	8245909	8245840..8245909	CG30049-RA,	FBgn0050049,	CG30049,	1	.
CG14508-RA	AACATATTTCCCCAAGTGGTGACAACCCCAGTCGACAGAGCTTTCCAACACTGGTTGCGTTGACATTGT	69	-	chr3R	25029498	25029567	25029498..25029567	CG14508-RA,	FBgn0039651,	CG14508,	1	.
CG30053-RA	CACGGATATCTGGAGCCTAAGTTATGGTCTGGAGAAACCCCACGGAAAGCTGACCTCCCTGGCTAGC	67	-	chr2R	8576326	8576393	8576326..8576393	CG30053-RA,	FBgn0050053,	CG30053,	1	.
CG14669-RA	GCCGCTCGATGAGAGATCAGATCTTGGACAGTTTCAGTCATCGTGATTTTAGCATAATTGTGGTCGGCA	69	+	chr3R	1280534	1280603	1280534..1280603	CG14669-RA,	FBgn0037326,	CG14669,	1	.
CG14660-RA	CGCGGATTGGACTGATTGGACTCCAGATACAACACAGGGTGACCGACAGTTCAAAGGTCATGATGGCGA	69	-	chr3R	702888	702957	702888..702957	CG14660-RA,	FBgn0020280,	laf,	1	.
CG5262-RA	TGTCGCAATATGAATCCTATAGCGTTATCCTACGCCTGTGCTTCCCTTTGCTCGCCATAATTCCGCCTT	69	-	chr3L	20421703	20421772	20421703..20421772	CG5262-RA,	FBgn0036988,	CG5262,	1	.
CG40354-RA	CGTCTACTCCACCAATGTGACTCGCAATACTCAAAAATCGAGGAGCTCTGCACAGGTGCCGCCAACT	67	+	chr3LHet	687547	687669	687547..687568,687623..687669				0	no match
CG3629-RA	GCGGCTCACCCTCACATTATCTACCTCCCGGACACAGTCCAACGCCATCGAGTACACCCGTGTCC	65	+	chr2R	20721175	20721240	20721175..20721240	CG3629-RB,CG3629-RA,CG3629-RC,	FBgn0000157,	Dll,	1	.
CG6560-RA	CCCGAGGCGGGTAGTGAACTATTCGAAATGCTCATGGACAATCGGTTGAAGCAAGTTCCCGTGCTGATT	69	-	chr3R	17711651	17711720	17711651..17711720	CG6560-RA,	FBgn0038916,	dnd,	1	.
CG14610-RA	TGCCCTCCCATCTGAAGCAGCGTCTATTTTATCGATTAAACAATGCTGATCCCATTTCCATCTGCCTCT	69	-	chr3R	2969593	2969662	2969593..2969662	CG14610-RB,CR42738-RA	FBgn0037477,FBgn0261702	CG14610,CR42738	2	.
CG10778-RA	GTGTAAATAGCGTATACCTGTACGTACAGATGCTACTGTTTTCCGGCCTATGCAATAAGGCTATCCGCC	69	-	chrX	7825932	7826001	7825932..7826001	CG10778-RA,	FBgn0029980,	CG10778,	1	.
CG13628-RA	TGGGCCACGTGGATCTTATCGAAAAACTGCTCAACTATGCTCCTCTGGAGAAGTGAACGGCACAATGGA	69	+	chr3R	20543570	20543639	20543570..20543639	CG13628-RA,	FBgn0039218,	Rpb10,	1	.
CG7514-RA	GGCCATGGCGTACAGCATCGAAAAGAAATCCATACCCGGCTACATGATGTACATTAATGGCGGTCTGGC	69	-	chr3L	4688636	4688705	4688636..4688705	CG7514-RA,	FBgn0035567,	CG7514,	1	.
CG32318-RA	CCCCAAAAGAAGTCCAACCAAAACATCCAGGTGTATGTGCGCGTCAGACCCCTTAATTCTCGGGAACGT	69	.	.	.	.	.	CG9191-RA,CG32318-RA,	FBgn0004378,FBgn0052318,	Klp61F,CG32318,	2	.
CG14346-RA	CCCACAAGACCAAGTAGTCGCACTGAAACTCAACCTCCTCCCACGGAACTGTGTGCCTCCAAAACATTG	69	+	chr2L	1368947	1369016	1368947..1369016	CG14346-RA,CG14346-RB,	FBgn0031337,	CG14346,	1	.
CG31842-RA	TTAAAAAACACATTTAATTAATTAAAACTTTACCAAAATGGCACAAAGTAGGCTTGAAAAGATTGGC	67	-	chr2L	13834952	13835019	13834952..13835019	CG31842-RA,	FBgn0260407,	mRpS23,	1	.
CG14620-RA	CGGAGGAAGCGTTTCACGGAGGAGTAGTGGACATCAGCAACATTTGTGCACCCGAAGATCTTCCCGATT	69	+	chrX	21853186	21853255	21853186..21853255	CG14620-RA,	FBgn0014395,	tilB,	1	.
CG5714-RA	AGGACAAGGAACAAAAGGATATATCTGAGTCGGCCGTTTAAGCGGGATTACAGGAATTAGTATAGTCTT	69	-	chr3L	2263619	2263688	2263619..2263688	CG5714-RA,	FBgn0000543,	ecd,	1	.
CG14957-RA	TGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCATAATAGCGAACCAGAATGACTCCACATGCGT	69	+	chr3L	3187736	3187805	3187736..3187805	CG14957-RA,	FBgn0035412,	CG14957,	1	.
CG3510-RA	ACCTGCATCACCCATCCCTAAGATATCGTAATCTGCTGGAGTCCCTTGAGCAGTTTTCGGCTACTGCCA	69	-	chr2R	18691578	18691647	18691578..18691647	CG3510-RB,CG3510-RC,CG3510-RA,	FBgn0000405,	CycB,	1	.
CG31160-RA	GCGCCGAGTACCCCAACGAACTGTATATGCCCAACGATTACTCCAAGAGCTTTGCCAACCACATGGAC	68	+	chr3R	18283121	18283189	18283121..18283189	CG34376-RA,CG34376-RB,	FBgn0085405,	CG34376,	1	.
CG18445-RA	AGTGCGTAAGAGTGTCTGGACAGGAGTACCGGCATGCTCCACATTTGTATATCCTTTCCAAACCGGCCT	69	-	chr2R	5923425	5923494	5923425..5923494	CG18445-RA,	FBgn0033476,	oys,	1	.
CG7589-RA	CGCTGAGCTTTACGGTCAATCTGAAGCGAGAAATTGGCTTCTATTTGCTCGACTATTACCTGCCCTCCA	69	+	chr3L	17466405	17466474	17466405..17466474	CG7589-RA,	FBgn0036727,	CG7589,	1	.
CG32143-RB	CATAAGTTCTGGAATAATCAAATCATTTCGGGAACGTTTCCTCAGCAACTCATCTGGGGACTCCG	65	+	chr3L	14673631	14673696	14673631..14673696	CG42280-RE,	FBgn0259175,	ome,	1	.
CG10851-RB	GGCTGAATGTGCCGATTTGGATTCAAGGAGTACATATAGGCCACGAAATTACTGCGACTTGTACACCGG	69	+	chr3R	9492484	9492553	9492484..9492553	CG10851-RA,CG10851-RB,CG10851-RF,CG10851-RD,CG10851-RC,CG10851-RI,CG10851-RK,CG10851-RL,CG10851-RM,CG10851-RN,CG10851-RO,	FBgn0004587,	B52,	1	.
CG14823-RC	GCTGACTGATTAGAATTGCCATTAGATGAACCAGCAGATTTCAACGTTTCGAAATTATAGCGATAATAA	69	+	chr3L	7059959	7060028	7059959..7060028	CG14823-RB,CG14823-RC,CG14823-RD,	FBgn0035734,	CG14823,	1	.
CG14944-RA	TCCGCCGGGTATCGTCGAGCTTGAAAAAATCAGCTCTGGACTTCGCATCGCGTTTCTTCAACAAATGCA	69	-	chr2L	11896252	11896321	11896252..11896321	CG42325-RD,CG42325-RH,	FBgn0259225,	Pde1c,	1	.
CG32277-RA	GCGTCTACACCCGCCTCAGTAGTCCATCGATTACGTACTGGCTGAAGGACTTTATCGAGCGACATTGCT	69	-	chr3L	3204665	3204734	3204665..3204734	CG32277-RA,	FBgn0052277,	CG32277,	1	.
CG32562-RA	AGGTCACATAAGTCGAGGAAGAGGAGAGACGCATCGGACCACAAACATGCCAGTAAGCACAAGCGC	66	-	chrX	17049031	17049097	17049031..17049097	CG32562-RA,	FBgn0028974,	xmas-2,	1	.
CG17904-RA	CCCGCTATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGACATTTGCGGTCCAT	69	+	chr2L	16732860	16732929	16732860..16732929	CG17904-RA,	FBgn0032597,	CG17904,	1	.
CG15134-RA	GGTGGCCCTACATGGAATGATGACTCGAAGCTCTAAGCAGTTGTCGTCCACTCTACAGGAGCTGCGTG	68	+	chr2L	16907633	16907701	16907633..16907701	CG42555-RF,CG42555-RG,CG42555-RH,CG42555-RI,	FBgn0261671,	tweek,	1	.
CG3600-RA	CCAACAAGCTGACCATTATCAAGACGCCGTTGAACAAGACTCTGCTGAAGAAGTGCAACAGCAACGG	67	+	chrX	1887541	1887608	1887541..1887608	CG3600-RA,CG3600-RB,CG3600-RC,	FBgn0026087,	CG3600,	1	.
CG18372-RA	GCAGAAGACAAGCATCCTTATCTTGGCACTTTTCGCCATCGCAGAGGCAGTTCCCACAACAGGACC	66	+	chr2R	10636761	10636827	10636761..10636827	CG18372-RA,CG18372-RB,	FBgn0041581,	AttB,	1	.
CG3671-RC	CGTTCACGTTCCTGTTTCTGGACAAGTACGGTCTACGCAAGCTGGAGTTCCTATTCGGCACCCTCATCA	69	-	chr3R	16883326	16883395	16883326..16883395	CG3671-RB,CG3671-RD,CG3671-RE,CG3671-RF,CG3671-RG,	FBgn0011672,	Mvl,	1	.
CG31547-RB	AGCATGGCTAGCTTGTTGACCAAGTTCCGCATCAAGTACTCTGAGCTCATTATGCTGAAGGGCGT	65	-	chr3R	1315902	1315967	1315902..1315967	CG31547-RB,CG31547-RA,	FBgn0051547,	CG31547,	1	.
CG30079-RA	CGGCGCATCCGTACCGATTCATTAAGCAGAGCTCCAACGAGACGAACACTTCACTGACGGGCTCTTATA	69	-	chr2R	11151820	11151889	11151820..11151889	CG34123-RD,CG34123-RF,CG34123-RG,CG34123-RE,	FBgn0083959,	trpm,	1	.
CG14995-RA	AGCGGCGTTGCAAAATACAAATGACCAGGAAAACTGAACACACATAAAAGACAAGACACGAGCAGCTGT	69	-	chr3L	4094892	4094961	4094892..4094961	CG14995-RF,CG14995-RD,CG14995-RA,CG14995-RC,CG14995-RG,CG14995-RH,	FBgn0035497,	CG14995,	1	.
CG6987-RA	CTCTGAAAATCGAAATAGATCGAAGCGTCTGATTTAAACTGGAGAAAATGGGATCACGCAACGAGTGCC	69	-	chr3R	12167591	12167660	12167591..12167660	CG6987-RA,CG6987-RB,	FBgn0040284,	SF2,	1	.
CG10851-RD	GAAAGAGAATCAAATCTAATTGAATCGCTGTGAGAAAGACAAGCTAGTCTAGTGACCGACCGACC	65	+	chr3R	9489234	9489299	9489234..9489299	CG10851-RF,CG10851-RD,CG10851-RI,CG10851-RK,	FBgn0004587,	B52,	1	.
CG4744-RA	TCCTTGCCGAGGATTTCAGTCAGGATGTGCGATTGCTCGATCCGAGTAAGATCAGCCAAAAGTCGAGAA	69	-	chr2R	9282546	9282615	9282546..9282615	CG4744-RA,	FBgn0033834,	CG4744,	1	.
CG10823-RA	AGAACAGGACGAAGGAGTAGGTTGTCCGCTAAGTGAGCACAAAGCAGTCAAAGATTTCGCACTAAACGT	69	-	chr3R	17103413	17103482	17103413..17103482	CG10823-RB,CG10823-RA,CG10823-RC,	FBgn0038880,	SIFR,	1	.
CG7503-RA	CTTGGGTCATGGCCTAGACCTGGATGACAATCTTAGCTTGCACAAGCAGGGATTCTATGGTGCCGGTT	68	-	chr3L	4939569	4939637	4939569..4939637	CG7503-RA,	FBgn0005775,	Con,	1	.
CG14982-RB	TCCCCAAAGGTTTCTCCTCGGAGGTGTACCACAATAGCTTGGATATGGAAAGGGAGGCTCTGAATGCCA	69	+	chr3L	3945786	3945855	3945786..3945855	CG14982-RB,	FBgn0035477,	CG14982,	1	.
CG11700-RA	ACGTCAAAGCCAAGATACAGGACAAGGAGGAAAACCCCCCAGAGCATCAGCGTTTGATCTTCGGC	65	-	chrX	6176850	6176915	6176850..6176915	CR11700-RA,	FBgn0029856,	CR11700,	1	.
CG13551-RA	GACGGATGAACTCGAGACATTTACTAAAATGCATTTCACTCTCTTTTGTATGTTCCCAAGTGCTCACTA	69	-	chr2R	19265466	19265535	19265466..19265535	CG13551-RA,CG13551-RB,CG13551-RC,	FBgn0040660,	CG13551,	1	.
CG31003-RA	GGCCATAGATCTGGTCTCCAAGATGCTGATATACTCGCCCAATGCCAGGGTTTCTCCGTTGATGGGC	67	+	chr3R	27199149	27199216	27199149..27199216	CG31003-RA,	FBgn0046332,	gskt,	1	.
CG4187-RA	CGCCAGTGATTTCCTCATGGGCATTTACCTCACATTGATTGCCTGTGCGGATATCAGTTTTCGCGGCGA	69	-	chrX	13057341	13057410	13057341..13057410	CG34411-RB,	FBgn0085440,	CG34411,	1	.
CG31814-RA	TGTGACATATTTGTATGTAAATGTACGCAAAAGTTTACAGCAAAAATAAAGCCCAAAAACAAGCCC	66	-	chr2L	13676859	13676925	13676859..13676925	CG31814-RA,	FBgn0051814,	CG31814,	1	.
CG7557-RA	CCCTGGCCAAGAAATGCTCACTCCTACTCCTGGAGCACACAAGTGTCGGATGAAGCGAGTAAATTCCGA	69	+	chr3L	11439037	11439106	11439037..11439106	CG7557-RA,CG7557-RB,	FBgn0036159,	CG7557,	1	.
CG17626-RA	CATGACTGCATATTGAACCGAAGAATGTGTCTTACTATATCCGACGTATATCCGATGGATCCACG	65	+	chrU	251836	251901	251836..251901				0	no match
CG31719-RB	ACAAATGCAGTCAAGGAGTATCAAGTTGCGGCACAGAAGTCTTCCTCGGAAATTTGCCCAGCTCCA	66	-	chr2L	10464084	10464150	10464084..10464150	CG31719-RA,CG31719-RB,CG31719-RC,	FBgn0051719,	RluA-1,	1	.
CG17333-RA	GCCGCAAAAGCCAGTGTCGTCAAGAGTGTGTTTGTCGATCTGGACAAGAAGTTTCCCGCTGCGTG	65	+	chrX	10742254	10742438	10742254..10742278,10742397..10742438	CG17333-RA,	FBgn0030239,	CG17333,	1	.
CG11000-RA	GTCTACTGGATGCTGGCCAAGTCGGAGCAGGAGGTGAGCGACTGGATCGATGCGATTACCAAGAC	65	+	chr3R	1632958	1633023	1632958..1633023	CG11000-RB,	FBgn0037380,	CG11000,	1	.
CG31710-RA	ATCGAGTCAAATCAGGCGGATCCAAGATGCTCACCAGACAACCCGACTACACCATCTCCGAGCTG	65	-	chr2L	9703500	9703565	9703500..9703565	CG31710-RA,	FBgn0051710,	CG31710,	1	.
CG14568-RA	GATCAGTTCTGGTGTACACCATCTGAAATGGGTCAACCCTAATTTGCTAGAAATCAAATGGAATCGACT	69	-	chr3L	21725993	21726062	21725993..21726062	CG14568-RA,	FBgn0037124,	CG14568,	1	.
CG6513-RA	AGTCGGCACGCTAATTGGCAAAACCGATTCGATTCCAGGGAAGGAGACACACTGATAGACGGGTGAAGA	69	-	chr3L	14024539	14024608	14024539..14024608	CG6513-RA,CG6513-RC,CG6513-RD,CG6650-RA	FBgn0061515,FBgn0036402	endos,CG6650	2	.
CG17003-RA	AGGCAGGACCAGAAAATCGTGGTAGGTACATCGATCTATCGACGTCGCTGGAAATCACCACGCACACT	68	-	chrX	19895181	19895249	19895181..19895249	CG17003-RA,	FBgn0031082,	CG17003,	1	.
CG17369-RB	TACCGAGGGCCAGATCTACGTCGATCGTCAGCTGCACAACAGACAGATCTACCCACCAGTCAACG	65	-	chr3R	8450902	8450967	8450902..8450967	CG17369-RB,CG17369-RA,CG17369-RC,	FBgn0005671,	Vha55,	1	.
CG4857-RB	TCGGCAGCAATCTAACGAGAGCATCCAACGTCGGCTGAAATCAGGAGAGCAGATTGGTTGGAATAGAGT	69	+	chrX	4020113	4020182	4020113..4020182	CG4857-RB,CG4857-RC,CG4857-RF,CG4857-RG,CG4857-RH,CG4857-RI,CG4857-RJ,CG4857-RK,CG4857-RL,CG4857-RM,	FBgn0026083,	tyf,	1	.
CG1354-RB	TACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGTGACCGGCTACAAGGGACTGCA	68	+	chrX	9675404	9675472	9675404..9675472	CG1354-RC,CG1354-RD,CG1354-RB,CG1354-RA,	FBgn0030151,	CG1354,	1	.
CG32336-RA	CCCACCACATCCCCTCATCGTCAAAGTACCGCGCATAACACCAGCGAGTTTATTATGTCTGCACTTGGG	69	-	chr3L	1118775	1118844	1118775..1118844				0	no match
CG5003-RA	CCGCGTCCGAACTACGATCAGGTTGTTCAGCATCCGATGTTTTGGAACATGCTCGAGCCACTGGATC	67	-	chr3R	23740235	23740302	23740235..23740302	CG5003-RA,	FBgn0039554,	CG5003,	1	.
CG6502-RA	CCGAGAGCGTTTCCCGGGAAAGGACTATGCACTCCTTTCACACGCTCTTCTGTCGTCGTTGCTTCAAAT	69	-	chr3L	10629741	10629810	10629741..10629810	CG6502-RA,CG6502-RB,	FBgn0000629,	E(z),E(z),	1	.
CG5367-RA	TTCAAGCGAACCGGGAAAATATTGAGCCTGAGTAAGCAACAAATCGTGGACTGCAGTGTGTCCCATGGA	69	-	chr2L	10355580	10355649	10355580..10355649	CG5367-RA,	FBgn0032228,	CG5367,	1	.
CG11437-RA	GCCGTCCCATGCCAAGAAATGAACAGATCTACGGCTACGCGGGATACTACACCAGAGCCACCTAC	65	+	chr3L	22462816	22462881	22462816..22462881	CG11437-RA,	FBgn0037165,	CG11437,	1	.
CG7958-RA	CACCGATACCCTGGAGATCGATCAGTACATCTGGGCCATACTCAACACGCTGGGCAACTCGGATG	65	+	chr3L	10866289	10866354	10866289..10866354	CG7958-RB,CG7958-RA,CG7958-RC,CG7958-RD,	FBgn0026160,	tna,	1	.
CG17941-RA	GCGCATGTGTTTTCCGAAATAGCGAGACTGAAAGATGACACCTTATCGGAGCACAGTGGAAGTGGGGCT	69	-	chr2L	641366	641435	641366..641435	CG17941-RA,	FBgn0000497,	ds,	1	.
CG3168-RA	TATGGCCTGTTGATGTGGTTCCCGGAGCTCTTCAATCGCTTCGAGGAGTACGAGAAGGCATTCCC	65	-	chrX	6616125	6616190	6616125..6616190	CG3168-RC,CG3168-RA,CG3168-RB,	FBgn0029896,	CG3168,	1	.
CG10914-RA	GCGGTTTGGCCAGATTGGATCTGCTGGAAATAACAAGCCCAAGGAAACACTTTGACTGGCTGAAGGTGT	69	+	chr2R	14047187	14047256	14047187..14047256	CG10914-RA,	FBgn0034307,	CG10914,	1	.
CG10811-RA	TATGATGCCTTTGTAATACAGAAGGAATCGCTTTGTAAGTGGCGAGATTCAAAGGATCAGTCTGCTGGC	69	-	chr4	936246	936315	936246..936315	CG10811-RA,CG10811-RB,CG10811-RC,	FBgn0023213,	eIF4G,	1	.
CG7128-RA	GCAAACCGGCCTTTCCTCCCTATGCAGCCGCTTTAAATCCCACAGATCAGGTGTTTGACTTCGAGGAG	68	+	chrX	17996799	17996867	17996799..17996867	CG7128-RA,	FBgn0022724,	Taf8,	1	.
CG18361-RA	GCGCAGCAATTACATCAAGCATACGGTCAATAAGTTGACCTTCTCGGAGCAGTGCTACTACGTGGTGAA	69	+	chrX	11251747	11251816	11251747..11251816	CG18361-RA,	FBgn0000499,	dsh,	1	.
CG6998-RB	TCGGGAACACGTCACATAGGGCATTCTCTTTCACAATATGGAGAGAGAGGCTACACACGAGCACACCGT	69	+	chrX	4593006	4593075	4593006..4593075	CG6998-RB,CG6998-RD,CG6998-RA,CG6998-RC,CG6998-RE,	FBgn0011760,	ctp,	1	.
CG11299-RA	ACCGAGAGCATCAACACGTTTCGCATCCAGGACTACTCTTGGGAGGATCACGGCTACTCGCTAGTG	66	+	chr2R	19619423	19619489	19619423..19619489	CG11299-RA,CG11299-RB,CG11299-RC,	FBgn0034897,	Sesn,	1	.
CG32381-RA	TTAGCAAGGAATCGAAATTCAAATGGTGCAAATGTGACGAGTGACTAAAAATCGGGGAATTCAGATTCC	69	-	chr3L	7261968	7262037	7261968..7262037	CG32381-RB,	FBgn0035756,	unc-13-4A,	1	.
CG1795-RA	GCTGCCAAGTTCGGTTATCGGGCCAAGTTCATAGCACAAACGCTGCAAGAGATCCAGAAAAAGGGGG	67	+	chrX	8585236	8585303	8585236..8585303	CG1795-RA,	FBgn0027864,	Ogg1,	1	.
CG33267-RA	CACTGTCGCCTGTTTCCTGGTGAGCCTGTCCAGTGCCAGTACCACAACCACAACTACAGATGATG	65	.	.	.	.	.				0	no match
CG5758-RB	ACGCGGCGTAAAAATGCTGCTGAACCACTTCGTTAAGGGACGACTGTATAACCGTGATCTGCGCGACAA	69	+	chr2L	18128481	18128550	18128481..18128550	CG5758-RA,CG5758-RB,CG5758-RC,	FBgn0032666,	CG5758,	1	.
CG4321-RA	ATGATGCTGGCCAAGATTGTCAGGGAATACGAACTGCTTCCGATGGGTCAAAGGGTTGAGTGCATTGTT	69	-	chr3L	7486780	7486849	7486780..7486849	CG4321-RA,	FBgn0015033,	Cyp4d8,	1	.
CG31671-RA	GCCACCAGATCCGATAAGTTGTCACCCACCTCTCCATCTGGGAATACACAAGGAACAAGGGCTCCAG	67	-	chr2L	2140445	2140512	2140445..2140512	CG31671-RA,CG31671-RB,	FBgn0031390,	tho2,	1	.
CG17359-RA	AGGGCGAGATCCTACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGATGATGA	68	-	chr3L	13991692	13991760	13991692..13991760	CG17359-RA,	FBgn0036396,	CG17359,	1	.
CG4769-RA	CGCAACCACCAAGTCAATGTTCTCTCCGCTGAAAAATATAAACACAAATACTATCCCAATATGCGAGAG	69	+	chr3L	5355552	5355621	5355552..5355621	CG4769-RA,	FBgn0035600,	CG4769,	1	.
CG30193-RD	GCTCGAGGACCAGCCAGAGGACGTGATACCCGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAG	67	+	chr2R	18814252	18814319	18814252..18814319	CG42678-RD,CG42678-RI,	FBgn0261564,	CG42678,	1	.
CG7068-RA	CTGGTGAGCAACAATCACCCTGGTATAATGCCACTCGTAGCGTCAACATTGAGATCTCCGCTTACGCCG	69	+	chr2L	7709378	7709447	7709378..7709447	CG7068-RA,	FBgn0041181,	TepIII,	1	.
CG31289-RA	ACGACTACAACCACTAATTCCGCTGCGAAATTACCTAATTTAGTGTCTAGGAAATGTTGTCTGTG	65	-	chr3R	18407878	18407943	18407878..18407943	CG31289-RA,	FBgn0024558,	Dph5,	1	.
CG33140-RA	CTCACTGAATGCCTCTTCCCAGCAGGATGTCCAAAAGCAACGGTCGCGGTTCATATATGTGCGCG	65	+	chr2R	3067744	3067809	3067744..3067809	CG33140-RA,	FBgn0053140,	CG33140,	1	.
CG12946-RA	CCAAAGCCAACAATAGTGCCTCATACGAACTCGACGATTTCCAACGGATCACTGTATGCTGTGTCCCC	68	-	chr3R	5598320	5598388	5598320..5598388	CG12946-RA,CG12946-RB,	FBgn0037750,	Whamy,	1	.
CG33161-RA	CAACGGGAGTGTAGGGATCTGTATCGTGGCTACCGGAACATCACGTCCAGCATGTTCTGTGCCTC	65	-	chr3L	3208349	3208414	3208349..3208414	CG32270-RA,CG32269-RA,	FBgn0052270,FBgn0052269,	CG32270,CG32269,	2	.
CG6958-RA	GGACAAGGAGCGACTGGAAGATTACACCCGCAAGTACGAGGAATATGACTTCTCACAGTTTGCCATCAA	69	+	chr3R	18519556	18519625	18519556..18519625	CG6958-RA,	FBgn0039004,	Nup133,	1	.
CG3568-RA	CGCTAACGACTATTACCGTACAATGCAGGGAAATATTGGTAACGAGGGCTTCGAGGCAGTGGGTACGCC	69	+	chrX	4437299	4437368	4437299..4437368	CG3568-RA,	FBgn0029710,	CG3568,	1	.
CG18516-RA	GCCAACTGCTATGAATTCACCGATAGCAACTTCAAGCTGAGTGGTCATGCTGTTCTTACGGATGCCCCA	69	-	chr3R	11375567	11375636	11375567..11375636	CG18516-RA,	FBgn0038350,	CG18516,	1	.
CG10962-RB	ACCAAGGACATCAACAACATACTACAGACGAATCTCATGGGCAGCATTTACTGCACCAAATTGGCCG	67	-	chrX	8867881	8867948	8867881..8867948	CG10962-RB,	FBgn0030073,	CG10962,	1	.
CG11619-RA	CCCAAAACACTGGGACTTCTGGTGGAGATAAAGTGGCCGCAAATAATGGCTTCTGGTGTGCCGGAAT	67	-	chr3L	18979730	18979797	18979730..18979797	CG11619-RA,	FBgn0036836,	CG11619,	1	.
CG7641-RA	GCGGGGCAAACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATGGGAACGGATACAT	69	+	chr3L	19990219	19990288	19990219..19990288	CG7641-RA,CG7641-RB,	FBgn0013303,	Nca,	1	.
CG15028-RB	GGCGATGAGATTTTGGTAGTTGAGATCATCGACAGTGGTGCGGACAATAGTAGCTCGGAATCGGGTGG	68	+	chrX	15074156	15074224	15074156..15074224	CG15028-RD,	FBgn0030618,	CG15028,	1	.
CG5623-RA	AGCGAGGTTATCACTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGTGTTCCCCTACAGCA	69	-	chr3R	11592291	11592360	11592291..11592360	CG5623-RA,	FBgn0038357,	CG5623,	1	.
CG30039-RA	AGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCTGAAAACGTTGAGGAAAATGTGAAAGA	69	-	chr2R	7938970	7939039	7938970..7939039	CG30039-RA,	FBgn0050039,	CG30039,	1	.
CG7632-RA	ACCTGGCACTTCCTACCACTCCATTGACCTCGTGCTGATCACTCGCCGACTAATGGAGGAGTACAACTG	69	+	chr3L	21298378	21298447	21298378..21298447	CG7632-RA,	FBgn0037071,	CG7632,	1	.
CG6012-RA	CGCATCTTCTTCCAGCGCATGAAGGCGTCTAAATTGAAGGGAGCCATTGTGAATGTTGGTTCCGGCAC	68	-	chr2L	16860433	16860501	16860433..16860501	CG6012-RA,	FBgn0032615,	CG6012,	1	.
CR32868-RA	TTCCCAGCAGGAAACCTGTGTGATTGCAGGGCGAAAGTACCAGAAATCCTGCTACCAGGTGTTGC	65	-	chr3R	27043204	27043269	27043204..27043269	CR32868-RA,	FBgn0046696,	RNaseP:RNA,	1	.
CR32525-RA	TAGCTCAGTTGGTAGAGCGGTGGACTGTAGATCCATAGGTCGCTGGTTCAAGTCCGGCTCGAAGG	65	+	chrX	21175746	21175846	21175746..21175774,21175809..21175846	CR32525-RA,	FBgn0052525,	tRNA:CR32525,	1	.
CG10966-RA	CCTCCAAGCCATCGATTGATGACGGACTAATGGAGGTTGTTGGCCTGACCACCTACCAGCTGCCC	65	+	chrX	8915432	8915497	8915432..8915497	CG34344-RA,CG34344-RB,CG34344-RC,CG42667-RD,CG42667-RE,CG42667-RG,	FBgn0261549,	rdgA,	1	.
CG17568-RA	CTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGTAGATGGCCAGCTAATGGATCTCGTCGC	65	-	chr2L	19180785	19180850	19180785..19180850	CG17568-RA,	FBgn0032763,	CG17568,	1	.
CG33234-RA	CGAATGAACAAGGGCAAGAAGGTTACTCTGAATAGTCTGGGAGTGGAGTCGCTAACCCAGCCGCGC	66	+	chr3L	2662509	2662575	2662509..2662575	CG33234-RB,CG33234-RD,	FBgn0053234,	CG33234,	1	.
CG4178-RA	GGATGTTTTTAGAGTGTCTGATACCTAGCTAGTAAGGTGTGCAAAAAGTCTAATAAACTTTCGAAAACC	69	+	chr2L	901243	901312	901243..901312	CG4178-RA,	FBgn0002563,	Lsp1beta,	1	.
CG10862-RA	GATCCCCTCACCATCACTAGGCTCCGTCGAGAGATCTCAGAGTTCTCAACCGATCAAACGGAAGGGTGT	69	-	chr3L	3653845	3653914	3653845..3653914	CG10862-RA,	FBgn0035455,	CG10862,	1	.
CG6405-RA	ACGAGCGCATAAACATAACAGAAAGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGA	69	+	chr2L	12424998	12425067	12424998..12425067	CG6405-RA,	FBgn0032428,	CG6405,	1	.
CG2973-RA	TACGCACTCCTTGTATATTCCTTCATTGTGCTTCATCTATTGCTAGTTTTTTAAAAAATAAATACAAAT	69	+	chr2L	2839468	2839537	2839468..2839537	CG2973-RA,	FBgn0031467,	Cpr23B,	1	.
CG1359-RA	AGGGCTTCCTTTACTACAAGACCAATCGCTACGCCCTGCATTATCTGGAAACTCCCTCTGGATTAAAGT	69	+	chr3R	26006306	26006375	26006306..26006375	CG1359-RA,	FBgn0260860,	Bet5,	1	.
CG4817-RA	GCGGATCCACGCGATCTTTCGACTTCGAAGTGACGCTCAAGAACGGAACTGTTCACATCTTCTCCTCCA	69	-	chr2R	19695093	19695162	19695093..19695162	CG4817-RA,	FBgn0010278,	Ssrp,	1	.
CG6451-RA	CGTGGGAGTCACTCCGTCCGCTACTCTCAACGAGTCGTCTGTTCATCTGCTAAACGATCTCTGCTGGTT	69	-	chr3L	14037028	14037097	14037028..14037097	CG6451-RA,	FBgn0041161,	blue,	1	.
CG2691-RA	TGATGATATGCTAGCTGACTCCGATTCGGATCTGCCCGAAGATATGGACGCTAAGGATGAGGCCGG	66	-	chrX	13514498	13514564	13514498..13514564	CG2691-RA,	FBgn0030504,	CG2691,	1	.
CG32240-RA	CCGGATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGGCATAACTTGGCCGAT	69	-	chr3L	4380966	4381035	4380966..4381035	CG32240-RA,	FBgn0052240,	CG32240,	1	.
CG33012-RB	CAGCCTCGGGATGGAGTAAGGATGCTCAGCTGGTCGTTCCTCAAGGGTATGCTGGACAATCCATC	65	+	chr2R	8257953	8258018	8257953..8258018	CG33012-RA,CG33012-RB,	FBgn0053012,	CG33012,	1	.
CG14905-RA	ACGCCGGGTCAACCTGATCATCAGCGCCATCAATATCGAGGATAACTCCAACAAAATACTGGCCCGAAA	69	-	chr3R	12448649	12448718	12448649..12448718	CG14905-RA,	FBgn0038452,	CG14905,	1	.
CG2976-RA	TGGCCACCAAACACGATGTGATTCGTCGCAAGTACTGGCAGTATGTGGCCAACCATCTGAAGAACCAG	68	-	chr2L	4829507	4829575	4829507..4829575	CG2976-RA,	FBgn0031633,	CG2976,	1	.
CG3499-RB	AGGCGCTTCTCAAGTACGAGACTCTTGACGCCGACGACATCAAGGCAATACTGAATGAAAGCCAGACGT	69	-	chr2R	18770686	18770755	18770686..18770755	CG3499-RB,CG3499-RC,	FBgn0034792,	CG3499,	1	.
CG3740-RA	CGTTGCGAAATTCGGGCCAACTCCACGTAGCCTAAATATGCCCATAGATACGCGCGAGTTGATGG	65	-	chrX	1563014	1563079	1563014..1563079	CG3740-RA,	FBgn0023530,	CG3740,	1	.
CG7037-RB	GCGAACCCATCGTTAAACGCTAGTGTTACTTAGCTAAACACATAAAACTAAGTTGGAGAAGTTCGACCG	69	+	chr3L	8423817	8423886	8423817..8423886	CG7037-RB,	FBgn0020224,	Cbl,	1	.
CG2816-RA	GCAGCCCATGATCAGTGGTCGGTGCTTTGGATACGTTGAGAGCTATGCCTACAATCCCATTAAGCGCC	68	+	chr2L	3703878	3703946	3703878..3703946	CG2816-RB,	FBgn0031564,	CG2816,	1	.
CG11126-RA	CATGTGCCCATGGCAGAATAGACTGGTGACCCTCAGTCTGCGTGGTAAGCACATTGTGGAGCTGC	65	+	chrX	11001626	11001691	11001626..11001691	CG42249-RC,	FBgn0259101,	CG42249,	1	.
CG3109-RA	TATATTTTGACATAAACTCACCATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTAAGCAAAGCC	65	+	chrX	1784357	1784422	1784357..1784422	CG3109-RA,	FBgn0023519,	mRpL16,	1	.
CG7274-RA	GCCCTGCACTGTGAGTGTGATGAATCTGGTGAAGCAGGCGTACAAGAAGTTTCTGCAACCATACGGCG	68	+	chrX	18739601	18739669	18739601..18739669	CG34422-RA,CG34422-RB,	FBgn0085451,	CG34422,	1	.
CG13921-RA	TTCGCCGACGTGAGTAGTTGCTGCAACATGTCTGTGAAGAATGACAGCTACTATGACAACGCCCAGCG	68	+	chr3L	1751063	1751131	1751063..1751131	CG13921-RB,CG13921-RC,CG13921-RD,	FBgn0035267,	CG13921,	1	.
CG13702-RB	CCTGAAGCTCATCACGATGATCCTGTACGCACTGGTCTGCATCATTGGACTCTTTGGCAACACCCTGG	68	-	chr3L	18481408	18481476	18481408..18481476	CG13702-RB,CG13702-RC,	FBgn0036789,	AlCR2,	1	.
CG4338-RA	GCCATAGCCGCCACTCTATACATCTGTGGATTCACGGAAGAGGCTCGCTGGTTTCTGGGCAAGTTCT	67	+	chr3R	11101860	11101927	11101860..11101927	CG4338-RA,	FBgn0038313,	CG4338,	1	.
CG4334-RA	CTCTTGTGTAAGACTTGTTACTTGTGCATTTCCAACTAATCTTGTTTTAGGTACATTGTCGATCTGCCG	69	+	chr3R	11096017	11096086	11096017..11096086	CG4334-RB,	FBgn0038312,	CG4334,	1	.
CG1780-RB	GCGCCAGGTTAAGAGCAAGTTGTAGAGCTCCTCATCCTTCTGATTCTTTTCCCGAACGAAAGAACAACG	69	-	chrX	9822396	9822465	9822396..9822465	CG1780-RA,CG1780-RB,	FBgn0026415,	Idgf4,	1	.
CG11295-RA	CGCCCTCTGTACAGAGCCAAAAGATACGAAAGACTAACGTACCCGAATAAAAGTAACTCCATTTT	65	+	chr2R	19592861	19592926	19592861..19592926	CG11295-RA,	FBgn0013548,	l(2)dtl,	1	.
CG32946-RA	GAGCCCGAAGAAAGTGCCCATCATCTCGCTGAAGCCCGCGAAAAAGGTGTTAATGTACAGGTGGTC	66	+	chr3R	577951	578017	577951..578017	,CG31530-RA	,FBgn0051530	,CG31530	1	.
CG17781-RA	TAGTGCACCAAGTGGTAATGGTCACTCGAATGTCTCGCACACAGTGGTCATCACACCTGCTCCTG	65	-	chr3R	20200481	20200546	20200481..20200546	CG17780-RC,CG17781-RA,CG17781-RB,	FBgn0039197,FBgn0039196,	CG17780,CG17781,	2	.
CG31259-RA	CTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCAGCCTACGTACAGCTCTATGACCGCATGCTG	65	+	chr3R	4350969	4351034	4350969..4351034	CG31259-RA,	FBgn0051259,	CG31259,	1	.
CG14330-RA	TGCCAGCCAGTGACGTTTTTTGGGGCCAAACTGACTAATTACACCGCGACGTAATCAAGTGACACGGAT	69	-	chr3R	13279062	13279131	13279062..13279131				0	no match
CG17950-RA	GACAAAATACACGAAAAACAATACACACACCGCAAATGAATCGAACGAAATTTCGCTCAGGTCTTTTCG	69	+	chr2R	17603976	17604045	17603976..17604045	CG17950-RA,CG17950-RB,	FBgn0004362,	HmgD,	1	.
CG3654-RD	CTCCGAAGCCCTGCATCAAATGTTGCCAATGCTAAACGATGTTTGCGAGAAGGAATCCGCTGCCC	65	+	chr3L	9478238	9478303	9478238..9478303	CG3654-RD,	FBgn0036004,	Jarid2,	1	.
CG5378-RA	TCCGCTTGGGACTGTTTTACCTTGACCACGATCTCATCACTCGCAACATCGACAAGGCCAAGTATCTGA	69	-	chr3R	18287142	18287211	18287142..18287211	CG5378-RA,	FBgn0028688,	Rpn7,	1	.
CG17957-RA	ATATGCAGGGATAATCTGGAGCCCGATTCCTCAGTTGCTTCCGAAGCTCAAGTGCCCTCAAGTGC	65	+	chr3R	25868339	25868404	25868339..25868404	CG17957-RA,	FBgn0003510,	Sry-alpha,	1	.
CG18375-RA	CCGCTCGCCACAAAAACTTCACCTTCAAGTCGCTGCAGAAAAAGTTCTGATTGCAATTTGCAGCCAGGA	69	-	chr2R	17105875	17105944	17105875..17105944	CG18375-RA,CG18375-RB,	FBgn0034606,	ASPP,	1	.
CG13466-RA	GGTCTCCTCCACGATCCTCGACAGTGATTCGGTGGACTATCCGTAGTGCTGAGTACGAGGGATATCGGA	69	+	chr3L	14935358	14935427	14935358..14935427	CG42247-RC,CG13466-RA,	FBgn0259099,	DCX-EMAP,	1	.
CG5723-RB	CCGAGAGAAGTGCAGAGGGTATAGGCTATAAATTACAAATCGAATGCAGACAACAAAGACAATTGTACA	69	-	chr3L	22286257	22286326	22286257..22286326	CG5723-RB,	FBgn0004449,	Ten-m,	1	.
CG31392-RA	ATCTGCGATCCATGCACCCTGGTTGTGCGTTTGCCAGTACTGTTGAAATGGTTACACCGAGGTCC	65	+	chr3R	11174761	11174826	11174761..11174826	CG42727-RA,CG42726-RA,	FBgn0261680,FBgn0261679,	CG42727,CG42726,	2	.
CG9826-RB	TACGGTGGCGAACGTTATTCCCATCCTCACACCACTGATTGCGGGTGAGATCGTGGCTGATAAGG	65	+	chr2R	18729588	18729653	18729588..18729653	CG9826-RB,	FBgn0034784,	CG9826,	1	.
CG4016-RB	TGGCCTTGCGTCAGAAGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTGGG	67	+	chr2R	9057232	9057299	9057232..9057299	CG4016-RB,CG4016-RA,CG4016-RC,	FBgn0086532,	Spt-I,	1	.
CG6951-RA	GCAGCGATGACGTGTTTCCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGACA	69	+	chr3L	20237483	20237552	20237483..20237552	CG6951-RB,CG6951-RA,	FBgn0036959,	CG6951,	1	.
CG18538-RA	TGCCGGTTTTTATCTGATTGTGATCAAATGCTATGGACCAGGTCAACCCACATGGAACACTACGTCAGT	69	+	chr2R	14185159	14185228	14185159..14185228	CG18538-RA,	FBgn0034324,	CG18538,	1	.
CG4221-RA	GCACAGATATAAAGGGAATTTATGGGCAAAGAAAACTCTTGAAAAACAAAATAGTTGATGAAGTGGCAG	69	+	chr3R	11758278	11758347	11758278..11758347	CG4221-RA,	FBgn0038385,	CG4221,	1	.
CG32390-RA	ACGGGTGCGTGGATATCTCGAAATAGCCAATGGTACTCAGGTCCAATCTCCTCATCAGCATAACAACAA	69	-	chr3L	7137077	7137199	7137077..7137106,7137159..7137199	CG42278-RC,	FBgn0259173,	corn,	1	.
CG33474-RA	TAAACAATGTGGGTTCAGAAGACTCTGGGGAGCCACCTGTGCTTCGGTACACTGTGGACAGCGAA	65	+	chr2R	6309864	6309929	6309864..6309929	CG33474-RA,	FBgn0053474,	CG33474,	1	.
CG5326-RB	GAGCTGGAGATCTCGAGATCAGCCTCCTCGTGTGTTCTGTGTGTTCTGATCTGATCGACAACGACGCGT	69	-	chr3R	18365505	18365574	18365505..18365574	CG5326-RA,	FBgn0038983,	CG5326,	1	.
CG17883-RB	CCCTGGCGCCTTACGGATTGGTTAATGACGATTTTAGAAGGATTTTATGGCCTCAGTTGGCAGGAGTCG	69	+	chr2R	559884	559953	559884..559953	CG17883-RA,CG17883-RB,	FBgn0040005,	CG17883,	1	.
CG4779-RA	TGGTGATTAACTCGGTTAGCTTTGACCATTGTGACCCCAGCATTTTTACCGTGCTCACTTGTCCCAGCT	69	+	chr2L	11137889	11137958	11137889..11137958	CG4779-RA,	FBgn0040211,	hgo,	1	.
CG10494-RB	GAAGAGGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTTTCGCGCCTTGGATGGCTCA	66	-	chr2R	17405343	17405409	17405343..17405409	CG10494-RB,CG10494-RA,	FBgn0034634,	CG10494,	1	.
CG12204-RA	GGTAGCCACAGACCACAGGACAAAAACGGCGCAACTAAATCGGAGGTGTTAGAGCCATTGCCATTGC	67	-	chrX	19388222	19388289	19388222..19388289	CG12204-RA,	FBgn0031022,	CG12204,	1	.
CG7499-RA	GGTGCCGTTTTGAAGTACACCAACTTCCGGAACCTGAAGAAGGACGAACATCACCAGGACGAGCACTAC	69	+	chr3L	4918757	4918826	4918757..4918826	CG7499-RA,	FBgn0028699,	Rh50,	1	.
CG5772-RA	GGATGTGCATTTGTTCAACGCGACCATACGTGAAAATCTCGATCCACACGGTTACTTCCAGGACCTGCA	69	-	chr2L	10183517	10183586	10183517..10183586	CG5772-RB,	FBgn0028675,	Sur,	1	.
CG6706-RB	TCCACCAACATCTCCACATCGCAATCGGAGTTGAGCAACATGTGTCCACACTCAAAGCCCAGTACTCC	68	-	chr3R	17596945	17597013	17596945..17597013	CG6706-RA,CG6706-RB,	FBgn0027575,	GABA-B-R2,	1	.
CG14458-RA	AGGAGTCGATATATCGACGGTGGTTTACGTCCATGCTGAAGGTGGGAAACTTCGCTACGAGCTGTCCCA	69	+	chr3L	22641380	22641449	22641380..22641449	CG33769-RA,	FBgn0053769,	CG33769,	1	.
CG3058-RA	GCCGTGGTCTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACTAAGGTGGGTCGCGTACC	68	+	chr2L	4403811	4403879	4403811..4403879	CG3058-RA,	FBgn0031601,	Dim1,	1	.
CG11404-RA	CGCCTTTAAGTGGGTCACCATCAGTCAGGGGCTTAACCTTGCCGCATCTACAAATACACTGGGTCGG	67	+	chr3L	22542265	22542332	22542265..22542332	CG11404-RA,	FBgn0037169,	CG11404,	1	.
CG10997-RA	CCAGGAGTACTTCATGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGAAGGTGACGAC	66	-	chrX	13708809	13708875	13708809..13708875	CG10997-RA,	FBgn0030529,	Clic,	1	.
CG15018-RA	AGCAGCTGTTCAACATGTTCAAGCCAATGATGTCCAAGAAAATGCAGTCTCGCCTATTTGTGCACGGCA	69	+	chr3L	4366179	4366248	4366179..4366248	CG33514-RA,	FBgn0053514,	CG33514,	1	.
CG2857-RA	GCCAGGTTCTGAGCATTTCGTACGCTCTGGTACAGTTCTGGTCCTACGAACAGCTTCGCTCCATGG	66	-	chr2R	20787729	20787795	20787729..20787795	CG2857-RA,CG2857-RB,	FBgn0035078,	Tpc2,	1	.
CG11105-RA	TCAATGGCGACGGCTTCATTACGAGGGAGGAAATGACTGACATTGTAACTGCCATATACGAGCTGAT	67	-	chrX	11119965	11120032	11119965..11120032	CG42683-RA,CG42683-RB,CG42683-RC,	FBgn0261569,	CG42683,	1	.
CG32452-RA	CGATCTGCGGCACCATATCCAGGGAATATACTCGCACCAACCCGCCTTTAATGCCTACACCGAGTG	66	+	chr3L	22712690	22712756	22712690..22712756	CG32452-RA,CG32452-RB,	FBgn0052452,	CG32452,	1	.
CG10308-RA	CACTGGCTCACCGACTATGCCCGGGATATATTTTTGACCATGAGGGAGCAAGAACTCAGCCGTCGG	66	+	chr3L	3466700	3466766	3466700..3466766	CG10308-RB,CG10308-RA,	FBgn0010317,	CycJ,	1	.
CG2038-RA	CCGGACTCCAAGCACTTCGAGACCCTGAACCTATTCGCATACGGCACATACAAGGAATACCGTGCAC	67	+	chr2R	4308873	4308940	4308873..4308940	CG2038-RA,	FBgn0028836,	CSN7,	1	.
CG32264-RA	GCAGCAATTGTATTTCATGCAGCATAAAATTGTCAACAAATGTTTAAAAGCAAAAAATTAAGCCAGCAA	69	-	chr3L	3717275	3717344	3717275..3717344	CG32264-RD,CG32264-RB,CG32264-RE,CG32264-RG,CG32264-RI,CG32264-RJ,CG32264-RK,	FBgn0052264,	CG32264,	1	.
CG15538-RA	CGACCATGACCGCTAAAAGAAACCGTTAGGGATCCCAGAAGAGGGTTTCCACATCTGCCCCAATGACC	68	-	chr3R	26270868	26270936	26270868..26270936	CG15538-RA,	FBgn0039771,	Osi23,	1	.
CG3606-RA	TCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCATCATCAAGGCAAACAAGCGTACA	69	+	chrX	16186089	16186242	16186089..16186147,16186231..16186242				0	no match
CG3548-RA	GCCGGACGCGCATACAATACTCATCGACACACTCAAGTTGCCACTCGGACGAATGGACTGTTGTTTATT	69	+	chr2R	20489303	20489372	20489303..20489372	CG3548-RA,	FBgn0035033,	CG3548,	1	.
CG6416-RH	AACACACACATTGCAAAAATGGAGTACGTTCAGTTCAAAAACGGATCCCCAGTCTACTACAAGGAGCAG	69	+	chr3L	8623636	8623705	8623636..8623705	CG6416-RJ,CG6416-RA,CG6416-RG,CG6416-RH,CG6416-RI,	FBgn0035917,	Zasp66,	1	.
CG32031-RA	GAGGCTGAGGGTGGTGTCTACGACATCTCCAACAAGCGTCGCATGGGTCTGACCGAGTTCGAGGC	65	-	chr3L	9042433	9042498	9042433..9042498	CG32031-RA,CG32031-RB,CG32031-RD,CG32031-RC,CG32031-RE,CG32031-RF,	FBgn0000116,	Argk,	1	.
CG11491-RD	CAACTCACGCCTATGGACCAGTATATAGAATACGGATATACACTGTTTACACTCTGTGGCCTTCT	65	+	chrX	1549337	1549402	1549337..1549402	CG11491-RN,CG11491-RL,	FBgn0000210,	br,	1	.
CG17738-RA	CCCTGGAGGAGTCCATCAATCAATCCAATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCT	65	+	chr3R	8096699	8096764	8096699..8096764	CG17738-RA,	FBgn0038009,	CG17738,	1	.
CG18347-RA	GGCCTGTGCCGAATGATTGTGATTGCTCCTCTGTTCGGAATCGCTCAAACGGTCTACTATCTGGGCG	67	+	chr3R	7796795	7796862	7796795..7796862	CG18347-RA,	FBgn0260743,	CG18347,	1	.
CG4509-RB	GTGTCCATCTCGAAGTACGAGTCCACGGTGACAGAGAATGGCAGGAAGCTCATGTCCACCTCAACGG	67	+	chr3R	6673298	6673365	6673298..6673365	CG42601-RC,CG42601-RD,CG42601-RE,CG42601-RF,CG42601-RG,	FBgn0261053,	Cad86C,	1	.
CG14709-RA	CGAGGGCATCATTACCATCGATGAAAGGGATACGGCTGACATGGGACTCTTTGATCTACGCAGCAAGAT	69	+	chr3R	7400701	7400770	7400701..7400770	CG14709-RB,	FBgn0263316,	Mrp4,	1	.
CG10883-RA	CAACTCACGATCATGCGATGCTGCTGATTGCCGTTGGCCAGGCCATCGCCGTTCCCAGTTGTTTC	65	-	chr3R	16114267	16114332	16114267..16114332	,CG43122-RD	,FBgn0262582	,cic	1	.
CG7685-RA	CAAGTTCCGGTGTCTGGACGGCTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTGCG	65	+	chr3R	14231258	14231323	14231258..14231323	CG7685-RA,	FBgn0038619,	CG7685,	1	.
CG3450-RA	GGTACACAATCTTCAAGGACCCGATTCGCCTATCTGACTATGAAATTCACGATGGCATGAATCTG	65	-	chr2R	2697614	2697744	2697614..2697640,2697705..2697744	CG3450-RA,	FBgn0022224,	ubl,	1	.
CG5626-RA	ACGTATGGCTGTGGAAAAACCAATCGAAGAACCTGCTAGTAAAAAAGAAAAATTCTCCACAACGGGC	67	-	chr3L	12198125	12198192	12198125..12198192	CG5626-RA,	FBgn0036266,	CG5626,	1	.
CG7994-RA	TGCGACCATCAGCGCGACCTTCGAGGACGTACCCTTCGATGCGAACAACTACTGGGCCCTATTGG	65	+	chr3R	4417382	4417447	4417382..4417447	CG42796-RD,	FBgn0261929,	CG42796,	1	.
CG18004-RC	CCCACAACGATGCTCAGCGATGAAAGCCCCTCTAAGTGGTAATAAGTTGTGCAATTCCCACGTTGCAGC	69	+	chr2R	6773619	6773688	6773619..6773688	CG18004-RC,	FBgn0033566,	CG18004,	1	.
CG3523-RA	GAATGTGGCATAGGCCCACTACCCACACGATCATCACCCTCTCACCGTCACTCACCCAATACTCG	65	+	chr2L	3067531	3067596	3067531..3067596	CG3523-RA,CG3523-RB,	FBgn0027571,	CG3523,	1	.
CG3618-RA	TGGATCTGGTGGCATAAGGAGCGATCAGCCCGAAAAGTTGATGCCTATGACTTCCCAGTTATCCTGCCT	69	-	chr3L	20807879	20807948	20807879..20807948	CG3618-RA,CG3618-RB,	FBgn0037028,	CG3618,	1	.
CG33269-RA	GCGGAAGTGCAAGAACCCAAAGAGGTGCCACAAGACCATCGTGATTGTGACCCACAGGAAAAATTAA	67	-	chr3L	11574949	11575016	11574949..11575016	CG33269-RA,CG33269-RB,	FBgn0053269,	CG33269,	1	.
CR30241-RA	GTCTAAGGCGCTGGTTTAAGGCACCAGTCTCCTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCA	65	.	.	.	.	.	CR30229-RA,CR30234-RA,CR30235-RA,CR30241-RA,	FBgn0050229,FBgn0050234,FBgn0050235,FBgn0050241,	tRNA:CR30229,tRNA:CR30234,tRNA:CR30235,tRNA:CR30241,	4	.
CG11589-RA	GCGGTTGCTTCTTCCGCGTATTTCCGGATCTTAAGCCACATCACACACAGTCGGTGAAACCACGG	65	-	chr3L	4186408	4186473	4186408..4186473	CG11589-RA,	FBgn0028664,	VhaM9.7-c,	1	.
CG14763-RA	AGCGAGGAAATCAAGAACCGCATCAAACTCGACAACTACGACAGATATCGCTACATAGTGCTGGTCACT	69	-	chr2R	3854484	3854607	3854484..3854509,3854563..3854607	CG14763-RA,	FBgn0033243,	CG14763,	1	.
CG2249-RB	GCAGGCCATTACAGTGTGTTACAGCTTAAATTTAAGTAAAAAGTGGAAACGAAATAAAGTTACCCGT	67	+	chr2R	5937491	5937558	5937491..5937558	CG2249-RA,CG2249-RB,	FBgn0040773,	CG2249,	1	.
CG5316-RB	CCGTGTCATCAACAGCAGAACAGATTCAGGCCTCCAGGATTTAACGCATGTCGGCAACCTTATCCACCC	69	+	chr3R	15231334	15231403	15231334..15231403	CG5316-RC,CG5316-RA,CG5316-RB,CG5316-RD,	FBgn0038704,	CG5316,	1	.
CG11269-RA	CATTGCGATAGTGGCCATTCGTCGGGATAACAAGAGAAGGAAGCGACTCTACAAGCGGGGTCCCG	65	+	chr2R	18026682	18026747	18026682..18026747	CG11269-RA,	FBgn0034700,	CG11269,	1	.
CG7599-RA	GTTCATGAACGAGGGATGCCGTGAGAAAGTCCGTGGCAGATACATCTGGAAGAATCAGACTCGCTGCGA	69	-	chr3L	15650248	15650317	15650248..15650317	CG7599-RA,	FBgn0004593,	Eig71Ef,	1	.
CG6613-RA	GTCTGCGTTCTCCAACTACGGACAGATGCAGCTACAATGCTCTGTTGCGGAAACACGAAAGCAACCGG	68	+	chr2R	17992083	17992151	17992083..17992151	CG6613-RA,	FBgn0034694,	CG6613,	1	.
CG33087-RC	GCAATGCGAGCACTGTAGGAATCTAACCTGTGAAAATGGCGGTATTTGCAGGGAAACGCTAACGGGC	67	+	chr2R	4111596	4111663	4111596..4111663	CG33087-RC,	FBgn0053087,	LRP1,	1	.
CG4863-RC	CGCGGCTAAGAAGTTGGAGTTGTTGCGACACCCCAATGGATTGCTACATTACGCTCGTTTCTGACCACT	69	+	chr3R	7049016	7049085	7049016..7049085	CG4863-RG,	FBgn0020910,	RpL3,	1	.
CG10757-RB	ACGTCGCCTCTGAATTTTTTGAAGTAACTTCAGGTTTTATTCAATTAAAATGTTGCCGATTGCACGTGG	69	-	chr2L	20097129	20097198	20097129..20097198	CG10757-RB,	FBgn0032849,	mRpS18B,	1	.
CG7843-RD	GCGTCCGCAACTTCCCGAACATCCAGGCACCTCTAAGCGTCCAGAATCGGAATCTGCTCGTGGAG	65	-	chr2R	1969426	1969491	1969426..1969491	CG7843-RD,CG7843-RC,CG7843-RA,	FBgn0033062,	Ars2,	1	.
CG33347-RA	TTTGCGTAAAGAGGACCACATTTTGGACCGCCCACACAGTCGGGTTGAAGGTGTCATGGTATGGG	65	+	chr2R	1243077	1243142	1243077..1243142				0	no match
CG7025-RA	CCCGTCAACCCTCCGAAATTTCTAGTTGCATTGGAGCAGACCCCAATCGAAACTACGATTCGCATTGGA	69	-	chr2L	7691725	7691794	7691725..7691794	CG7025-RA,	FBgn0031930,	CG7025,	1	.
CG6549-RC	ACGGCTCTCGAGCAGATCAACCAGTTTGGCTATACATCAGAATCATCGGATCAGTGCATTCCGCAGCGT	69	-	chr2L	17479888	17479957	17479888..17479957	CG6549-RC,CG6549-RA,CG6549-RD,CG6549-RE,CG6549-RF,	FBgn0024689,	fws,	1	.
CG7548-RA	CCAGCTCCGGTTTACACGCACCAGGCTCATCAGGAACCAAAAAATCTGTTTACTCAGGCATCGCCAGTT	69	-	chr3L	7498953	7499022	7498953..7499022	CG7548-RA,	FBgn0035792,	CG7548,	1	.
CG10651-RA	TGTGAGCCAATCCGAGATCAGTGCGCCATAACCCCAAATTACGGTCATGCGGAAGTCAGCTATTCGC	67	-	chr2L	20134455	20134522	20134455..20134522	CG10651-RA,	FBgn0032853,	CG10651,	1	.
CG15072-RA	CCAGAGGTTTTCCAAGGCTTGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG	69	+	chr2R	14587289	14587358	14587289..14587358	CG42856-RA,CG42856-RB,CG18604-RA,	FBgn0262103,	CG42856,	1	.
CG17834-RB	CTCGCAATGCGGATATAATCAATTGGAGAGTGACCAATATCGCCAAAATGTGACTTAATATTATTAACT	69	+	chr2L	8537659	8537728	8537659..8537728	CG17834-RB,CG17834-RD,	FBgn0028394,	CG17834,	1	.
CG31561-RA	GGAAAAGCTTGCCGAACAGGAGGAACTAAACGTTTTGCCAGGAATCAGCGTGGTCAAGGATGAGAACG	68	+	chr3R	2131206	2131274	2131206..2131274	CG31561-RA,	FBgn0051561,	Osi16,	1	.
CG1946-RA	TGGAACTTGCATTAACATGAGCCTGGACATCGACAATTGGCTATCCCTTTACCCGCACGTTCGACCCA	68	+	chr2R	3603386	3603454	3603386..3603454	CG1946-RA,	FBgn0033216,	CG1946,	1	.
CG10688-RA	TCAGATCAGCTTCGATGTCTTCCCGCATGGTTGGGACAAGACCTACTGCCTGCGACACATCGAAG	65	+	chr3L	12528299	12528364	12528299..12528364	CG10688-RA,	FBgn0036300,	CG10688,	1	.
CG14835-RA	GCGAAGTCCAGGGATTGGAAGTACCAGGTGTACCAGGTATACATCCCAATTTCACTGGGAAAACCCGCC	69	-	chr3L	7429980	7430049	7429980..7430049	CG14835-RA,	FBgn0035782,	CG14835,	1	.
CG14556-RA	CCTTGACTGTGACGGTTAGACTATCCGATGAGTTCCGGAAGTCACAAATGAAACTTGAAGACAGCGCCA	69	+	chr3R	21953379	21953448	21953379..21953448	CG14556-RB,	FBgn0039413,	CG14556,	1	.
CG5671-RA	GCCGACGAGGCATTAGCGTGGTATGATGAGAAGCGTACAAAGGACCGAAAAGGTGTGACAATCCCATCT	69	-	chr2L	10258799	10258868	10258799..10258868	CG5671-RD,CG5671-RE,CG5671-RB,CG5671-RA,CG5671-RC,CG5671-RG,CG5671-RH,	FBgn0026379,	Pten,	1	.
CG6171-RA	GCTGAGCCAGTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATCAAGATTAAAGCCGAACC	68	-	chr3R	11189239	11189307	11189239..11189307	CG6171-RA,CG6171-RB,	FBgn0026737,	CG6171,	1	.
CG31805-RA	CTTGCCCGACTACCAAGCGTTGCTCAAGGAAAAGCACTTGTGTGCCGAAAACCACTCGAATGTGC	65	-	chr2L	16899833	16899898	16899833..16899898	CG31805-RB,CG31805-RC,	FBgn0051805,	CG31805,	1	.
CG14527-RA	TCCACCTTTAAGGAGACCTTGCTATCCAGTCCGGCTCTAGATTGGATCGAGCCATCCACTCGAAGTCT	68	+	chr3R	24707706	24707774	24707706..24707774	CG14527-RA,	FBgn0039613,	CG14527,	1	.
CG32491-RD	CCTGTGGCTCGATGGGATGAAGTTCTTCCGCAACAACATAAACCGCACGAATTTGTACTGGCGCTGC	67	-	chr3R	17179310	17179377	17179310..17179377	CG32491-RD,	FBgn0002781,	mod(mdg4),	1	.
CG32283-RA	CCTAATGGAGGCCAACACTGTTTTGGCACGTGATTGCCTATCTGGAACTTTCGGAGGTCCTTGCTGG	67	+	chr3L	3315083	3315150	3315083..3315150	CG32283-RA,	FBgn0052283,	dro3,	1	.
CG15031-RA	ACCACTCGTAGCCCTCACCAAGGATCCCAAGATGAAGAAGTCACAGAAGAAGTCATCAATGGTGGCCGT	69	-	chrX	15138793	15138862	15138793..15138862	CG15031-RA,	FBgn0030623,	PPYR1,	1	.
CG5681-RA	ACGAGTGGAGGTATGAAAGCTGCACCAGAAAAAATGATGAAACATAATGAATCCTCTGAACGGATGTCC	69	+	chr2L	17987958	17988027	17987958..17988027	CG5681-RA,	FBgn0032658,	CG5681,	1	.
CG6461-RA	TGGAGAGCGTAAGGAAGCTGATCCACGACAATAGCACTTCGGAGGACTACCTCTACTATGGCGCCAACT	69	-	chrX	18401599	18401668	18401599..18401668	CG6461-RA,	FBgn0030932,	CG6461,	1	.
CG14391-RA	TCCCCTGATTCCGAACAAGAGCATGTTTTTGGGTGGTAGCATTCCCATGGGGTCACAAACATCCCAAGT	69	-	chr3R	8520086	8520155	8520086..8520155	CG14391-RA,	FBgn0038078,	CG14391,	1	.
CG9984-RA	CCATCGACTTGATACGAAACCCCCAGTTTCTGGAGCTACTGGTAGACGCGCTCTTTCGTTCCGGC	65	-	chrX	16284205	16284270	16284205..16284270	CG9984-RA,	FBgn0010416,	TH1,	1	.
CG9871-RA	GTTGGTCTCGAAGGCGAAGAAAGGCCAGAATGCTTCACGCAAGAACTTGATGCAAGTGCCGGAAC	65	-	chr2R	19134951	19135016	19134951..19135016	CG9871-RA,	FBgn0034837,	RpL22-like,	1	.
CG5155-RA	ACCGAGGGCATGATTCCCGACATTGTGAGCCATCTGAGTTCCGAAAATACCGAGCTGAAGATGGAGG	67	+	chr2L	7389621	7389688	7389621..7389688	CG5155-RA,	FBgn0031905,	CG5155,	1	.
CG31961-RB	CACTGCGCATATGATACGTGCCCAGTAAGAAAGCCGCGTTTTCCATGCATTTCTCTGCAGCTGCG	65	-	chr2L	4187594	4187659	4187594..4187659	CG31961-RB,	FBgn0051961,	CG31961,	1	.
CG4807-RA	CCCCGAAACGAACCTCAGACTTCCATGAGTTGTGACTGGTCCTGCACTCCATCTTCATGAAACTTGCCA	69	+	chr2L	11260096	11260165	11260096..11260165	CG4807-RB,CG4807-RA,CG4807-RD,	FBgn0259750,	ab,	1	.
CG18469-RA	AGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATCGTAATAGAATTGAAGCTACTGATAATG	69	-	chr2R	13133413	13133482	13133413..13133482	CG18469-RA,	FBgn0034206,	CG18469,	1	.
CG11066-RA	TGACTGGAGTCAAGACCGTCGATGTCCATCCCGATTACGATCCGTCGACAAACTCCCACGACTTGG	66	-	chr2R	1566857	1566923	1566857..1566923	CG11066-RB,CG11066-RA,	FBgn0033033,	scaf,	1	.
CG3294-RB	GGTATTTTTCATAGACCCTGTACACGGTATTAATCAGCTGTGTTCTCACAAATGCGTTTCAGCTG	65	+	chr2L	4794574	4794639	4794574..4794639	CG3294-RA,CG3294-RB,	FBgn0031628,	CG3294,	1	.
CG14876-RA	TGTTGGCTCTTTCCACGATTCCACTGCGCATGGACCAACAAATCCAGTGCATCAAGACAATTCAGCAGG	69	-	chr3R	11658728	11658797	11658728..11658797	CG43318-RA,	FBgn0263023,	CG43318,	1	.
CG8087-RA	CGGGCCAATGGAAACGTTATTGTTGTCGGCTAAGTACGCGGAATTCAATAAAATGCTCAACAAGA	65	-	chr3R	10390043	10390108	10390043..10390108	CG8087-RA,	FBgn0038241,	CG8087,	1	.
CG16890-RA	CCGAATGAGACGGAATCACGTCGGCACAAGCGAGACATCGATGTAATCCGAGAGAATCACCGCTTCCT	68	-	chr2L	13783276	13783344	13783276..13783344	CG16890-RB,CG16890-RA,	FBgn0028932,	CG16890,	1	.
CR7249-RA	CGCAAGTACCCGGCTCTTAGTTCACTTACACGTCTCGCCTCCGAGGACTATGAGATCCCCTCGCC	65	-	chr2L	5621971	5622036	5621971..5622036	CR7249-RA,	FBgn0031726,	Cyp6a16Psi,	1	.
CG2957-RA	TGCCCAAGGACCAGTTGGAACTTTTGCTAGTTGAGAGCATTGCCGATATCGAATACTCCAACTTTACCA	69	-	chr3R	3727374	3727443	3727374..3727443	CG2957-RA,	FBgn0037529,	mRpS9,	1	.
CG7629-RA	CCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCCAAGTGGCAATCTCAACCTCAACGCCACCG	65	+	chr3R	13451520	13451585	13451520..13451585	CG7629-RA,	FBgn0038530,	AttD,	1	.
CG31146-RD	AGGACGAGGACCTTAAGGAGCCCCAAATCACACAGAACACTCTCATTGTTGGACCCATTGTGCCC	65	+	chr3R	3518772	3518837	3518772..3518837	CG31146-RD,CG31146-RE,	FBgn0051146,	Nlg1,	1	.
CG3664-RB	AGCATAAGGCCGACTGGAACCGAAACAAATCGACCGACGAACAACTGCTGCAAGTGATGTCCCTTCGTA	69	-	chr2L	2360456	2360525	2360456..2360525	CG3664-RA,CG3664-RB,CG3664-RF,CG3664-RD,CG3664-RC,CG3664-RE,	FBgn0014010,	Rab5,	1	.
CG5408-RA	TACAATACATTTAACATTTTAATTTTTTTGCAAACTGTTGATCTTATCAAAGGACAGTCGCCCTGATTT	69	-	chr3L	20389552	20389621	20389552..20389621	CG5408-RA,	FBgn0028978,	trbl,	1	.
CG8975-RA	TGCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTT	69	-	chr2R	7871112	7871181	7871112..7871181	CG8975-RA,	FBgn0011704,	RnrS,	1	.
CG8822-RA	CCGGCACCCATTCGAGTTGTGGGCGACATACACGGGCAGTTTTATGATCTGCTGAAGATCCTCGATCAA	69	+	chr2L	3109950	3110019	3109950..3110019	CG8822-RA,	FBgn0005779,	PpD6,	1	.
CG4424-RA	ACCCATCGAAATGAGCGTCCTTATGCCTGCAAGACCTGCGGAAAGAAGTTCACATATGCCAGTGTCCTT	69	-	chr3R	15852593	15852662	15852593..15852662	CG4424-RA,	FBgn0038765,	CG4424,	1	.
CG9414-RA	GCAGGATACCCAGCAAGAGACTGAGGCAGGTGATTAGGGAGTACACCAAGGAAAACTGCATCCTCGACG	69	-	chr2L	13285097	13285166	13285097..13285166	CG9414-RA,	FBgn0028406,	Drep-4,	1	.
CG32695-RA	AAACTGGACTCTCCCACTGAGCAAAGTTAAATTTAAATGCGTGTTTATTTTTAAGTCTGTTTGCCTTGC	69	-	chrX	9767626	9767695	9767626..9767695	CG32695-RA,	FBgn0052695,	CG32695,	1	.
CG8944-RA	CCGCGAACGACTGAATCTGTAATACTACACTTCGAGGCGAGTTAGGTTCTCGAAAATATCGCGCCACTT	69	-	chrX	15636113	15636182	15636113..15636182	CG8944-RA,CG8944-RB,	FBgn0030680,	CG8944,	1	.
CG5455-RA	CGGCGTGCGGGTTATTGCCTTAAACTACACCACTGATCAGTACCTTTGGAGACCGCTGTGGAAAAGCAA	69	+	chr3R	22294161	22294230	22294161..22294230	CG5455-RA,CG5455-RB,CG5455-RC,	FBgn0039430,	CG5455,	1	.
CG7003-RA	TCACTACGACCAGTGGAAGCAATGCATTGACTGCGTCGCCAACCTGGATGTCCTAGGCTCACTAG	65	-	chr3L	15148767	15148832	15148767..15148832	CG7003-RA,	FBgn0036486,	Msh6,	1	.
CG4380-RA	AAAGCCGGTGTGTCAGCCATCTTCGACCGCATATTGTCGGAGCTGAGTGTAAAGATGAAGCGGCTGAAT	69	-	chrX	1933743	1933812	1933743..1933812	CG4380-RA,	FBgn0003964,	usp,	1	.
CG30321-RA	ACGGGCCACGAGTGGAATAGAAAAAGTATGCCAAGCTGACCGCATAGCACAGGATAACACAGACCAGGA	69	+	chr2R	11680911	11680980	11680911..11680980				0	no match
CG9547-RA	GCGCCAAATGAGGGACATGCTGGGTGCAAACGGAATCAGCGACGAATATCATGTGATCCGCCATGTAAT	69	-	chr2L	6493157	6493226	6493157..6493226	CG9547-RA,	FBgn0031824,	CG9547,	1	.
CG30375-RA	ACCCCGGCGCTATACCAAGTGGTTCTAACTGTCGATTTCGCTTGAAGGCACCCAGTAATCATGTTATCT	69	-	chr2R	4154591	4154660	4154591..4154660	CG30375-RA,	FBgn0050375,	CG30375,	1	.
CG12444-RB	CCCGTAACTTGATGGGTTATCCACTGCGTGTTTTAGTGACCAACGACCCACCTCATTGCTTTGTGGACA	69	-	chr2R	7676421	7676490	7676421..7676490	CG12444-RB,	FBgn0033651,	Tango3,	1	.
CG18103-RA	AGGCTGAAAAGTGTGTTCGGTTTGCATCCCAGGAGAAAACAATCGCTCACTCATTTATCCCACTTGCCA	69	+	chr2L	8180983	8181052	8180983..8181052				0	no match
CG1245-RA	AGTTAAATTCCACTCTAACTGCCGTCAAAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCAC	65	+	chr3R	1480934	1480999	1480934..1480999	CG1245-RA,	FBgn0037359,	MED27,	1	.
CG32640-RA	ACATCCACGAACGACGGCTCAATTCCGGAAGATCAACGAAGCATTTAATGTCCTGTCAGATGCGTCGGC	69	.	.	.	.	.	CG32640-RA,CG32641-RA,	FBgn0052640,FBgn0052641,	CG32640,CG32641,	2	.
CG12426-RA	AATCTTGCAGTGCAATGGGCGTGGTAACGTATCTGCCTTTGTCCATCAGGTCCTGGAGGTTGTGG	65	-	chr3R	23697935	23698000	23697935..23698000				0	no match
CG8058-RA	GCGCTGCAAGACGATCAAAGAGTTCGACGCGCTTTTTACGGCTAAGCAGTTCGGATATGCCCATGTGAA	69	+	chr2R	5022083	5022152	5022083..5022152	CG8058-RA,CG8058-RC,CG8058-RB,	FBgn0033382,	Hydr1,	1	.
CG10638-RB	GGGACATATACCACGAACCCAAGATGGTGAAATACGCCTGTGATATGCAATTAAAGCTACTGGGCGTGG	69	-	chr3L	12493827	12493896	12493827..12493896	CG10638-RB,CG10638-RC,	FBgn0036290,	CG10638,	1	.
CG13055-RA	CAATCGAAACGGAAGCCGATTAGCCGAGCCAGTTTCTCGCGTCTCCATCGTCGCTCCACATCCTC	65	-	chr3L	16244583	16244648	16244583..16244648	CG13055-RA,	FBgn0036583,	CG13055,	1	.
CG12433-RA	GCCACAAGCTTTTACTGAGGATCGTCGAGTGATGGTTCCGCCTCTATTGCAACTCTTCCATGGTCCTGT	69	+	chrX	16917042	16917111	16917042..16917111	CG12433-RB,CG12433-RC,	FBgn0030811,	CG12433,	1	.
CG4467-RA	GGTCCTGTCACAGTTCTCTCTTCACACACTCATTTGTAATTATGTTCCTCTCTCAGACACACGAATCTT	69	-	chr3R	19056086	19056155	19056086..19056155	CG4467-RA,CG4467-RB,	FBgn0039064,	CG4467,	1	.
CG8929-RA	GGAGGAGTGGTGGTATAAATATCAGGAATGGTTGAAACAGGAACGCTACTATGAGTACTGGGATCGCAG	69	+	chr2R	16217743	16217812	16217743..16217812	CG8929-RB,CG8929-RA,CG8929-RC,	FBgn0034504,	CG8929,	1	.
CG1898-RA	GCCGCATCGTGGAGACATCCATGAAATTCGACTATGACATGCAGAAGATCCTGGACGAGATCCTCAACG	69	-	chr3L	1864624	1864693	1864624..1864693	CG1898-RA,	FBgn0042712,	HBS1,	1	.
CG10670-RA	GGTCACCAGCTTCATTACGAACCCATGGCGGAAGATTTGAGCTTACGTCTGGCGCAGATGAGTCTAGGA	69	-	chr3L	5143313	5143382	5143313..5143382	CG10670-RA,	FBgn0027914,	Gen,	1	.
CG5060-RA	CCGACTTGGGATTACTGTTATATACGGATGTGTTGCACCAGGGTCGTAACCATGTGATACTCGATGCCA	69	+	chr3R	16114796	16114865	16114796..16114865	CG43122-RD,	FBgn0262582,	cic,	1	.
CG6713-RA	GCACGACAAAATACCGCCGGATACTCTAAGGAATCTTCTGGCCCGATTCTTTGATCTGACCACTCCGCC	69	-	chr2L	10806633	10806702	10806633..10806702	CG6713-RI,CG6713-RB,CG6713-RC,CG6713-RD,CG6713-RE,CG6713-RF,CG6713-RH,CG6713-RA,	FBgn0011676,	Nos,	1	.
CG1867-RA	CCGTTTGTGTGGACACACTGTTCTGTTCTCTGAGCCATAATCTCTGTGCCCTATTCCAGATTGCCAGGC	69	+	chr3R	24178652	24178721	24178652..24178721	CG1867-RA,	FBgn0039582,	Or98b,	1	.
CG13928-RA	CCAGTCAATCCAGGCACCGAGGTTCTCCCTTCATCTTCATTTTCCAACTCACTTCCGGGGTGTGG	65	-	chr3L	1626436	1626501	1626436..1626501	CG13928-RA,	FBgn0035246,	CG13928,	1	.
CG32683-RA	AGGATTGCGCAAACATTTTGGTTCCCCTCCTATCCCATTCGATTCCGTTGTCCTTTCTGTCTCCGGAGC	69	-	chrX	10304598	10304667	10304598..10304667	CG32683-RA,	FBgn0052683,	CG32683,	1	.
CG30270-RA	TCGCCTTTCCCAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATTTCCGCATCT	69	+	chr2R	18672180	18672249	18672180..18672249	CG30270-RC,CG30270-RD,	FBgn0061435,	CG30270,	1	.
CG31886-RA	CGCCTCACCGGGAACGTCTCAAAAGACACAATAGGGTAGCCCATAGGAATCAGAAGAGACAGGATCTTT	69	-	chr2L	8954599	8954668	8954599..8954668	CG31886-RA,CG31886-RB,CG31886-RC,	FBgn0032079,	CG31886,	1	.
CG30477-RA	TGTGAATAGTGTGGATGGGGCTAATTTCCGATTTGCACTCACTTCCTCTCGCGGGAAATGCAATCATAA	69	+	chr2R	10530464	10530533	10530464..10530533				0	no match
CG11245-RA	ACGGTTGTGCGAACTTAAGCGCCAGCATGAAAAAGAAACTGCGCAAGGAGAAAAAGAAGCAAAAGGCGA	69	+	chrX	12341245	12341314	12341245..12341314	CG11245-RA,	FBgn0259680,	Pkcdelta,	1	.
CG3288-RA	TCGTCATCCTGTGCTTCGTGGTGGTCTATATCAGCCACAAGATCTATGTCTCCGTCTACGACAACCTGC	69	+	chr3L	20829374	20829443	20829374..20829443	CG3288-RA,	FBgn0037030,	CG3288,	1	.
CG10031-RA	TCGTTGGGGATTCCGACAAACTTGTGAGGAGGCTTGTATTCCCAAAAAGTGATCCATTGATGGCGGTCA	69	-	chr2L	3698568	3698637	3698568..3698637	CG10031-RA,	FBgn0031563,	CG10031,	1	.
CG40081-RA	GCAAGTTCAGAGGTGAAAATATACTCATACCACGAATTCCTGTTATACCTAGAGATGTGCCAATTCAAT	69	+	chr2RHet	3164113	3164182	3164113..3164182				0	no match
CG12505-RA	CGGCGTGCCGGTAAGCCTCGACTAGCTTCTGAAATCCACAAATCCACGCTGTTTGTATTGCTATTCGCA	69	.	.	.	.	.	CR10102-RB,CG12505-RA,	FBgn0033927,FBgn0033926,	CR10102,Arc1,	2	.
CG10718-RA	GGCCCAACAACAGGAACACACTCCGCTAAGGCATGAAGATGCAGTATCAACTCCAGCACAGAAGTCGAC	69	+	chr2L	20088683	20088752	20088683..20088752	CG10718-RA,	FBgn0004374,	neb,	1	.
CG7407-RA	ATGACGAGGCCTACGAAGAGAACTCCACCGAAAGCGAAGTTGAGCTAATCGAGGAACAGCTGCCC	65	+	chr3L	21816913	21816978	21816913..21816978	CG7407-RA,	FBgn0037134,	CG7407,	1	.
CG1363-RA	AAGGCAGCGAAAAAGAGCTATTCGAATGGTAGTGAACCGGAGATGCTCTCTCCCCTGACCAGCCC	65	-	chr2R	3468796	3468861	3468796..3468861	CG1363-RA,CG1363-RC,CG1363-RB,	FBgn0004133,	blow,	1	.
CG13617-RA	TACGCCACTCGAAATCGCATCCGCAAGTTTGTCGAAAAACTGTGCTCCGCCAAGTTCTCGGAACG	65	+	chr3R	20343327	20343392	20343327..20343392	CG13617-RA,	FBgn0039201,	CG13617,	1	.
CG9399-RB	GCGGAAATTGGCACACTCTCCTCAAGGTCAAGGATGTTGTGCGATAGCTAATGAACCTGTGATCGTGCA	69	-	chr3R	5399577	5399646	5399577..5399646	CG9399-RB,	FBgn0037715,	CG9399,	1	.
CG12017-RA	CGGTCGGATACTTGATGCTTGGGATGGAGAGCTGAATATCCAATGGCAGAAACTAAAAGTCGAGGCCGA	69	.	.	.	.	.	CG12017-RA,CG12017-RB,CG12017-RC,CG12017-RD,	FBgn0035429,	CG12017,	1	.
CG14394-RA	GCTTCGCCATCAACCACTTCATAGATGCCTTCATATTCCTGTCCGTGTTTTGTGACATCATGAAG	65	+	chr3R	8522856	8522921	8522856..8522921	CG14394-RG,CG14394-RB,	FBgn0038079,	CG14394,	1	.
CR9700-RA	AGTCCATATTGTCTGGTCAAGTCACTGCAGATCACCTTTCAGCTTTGCCTGCTGGTCTTTGTGGGCGTT	69	-	chr3R	4460380	4460449	4460380..4460449	CR9700-RA,	FBgn0026399,	Or85e,	1	.
CG13490-RA	GACGGTGCCCATCTACAGTTTTGGCCTCTGTCTCTCGGAGTGCAGGATGTTCTTTGCTCTGCGGG	65	+	chr2R	17856218	17856283	17856218..17856283	CG34369-RA,	FBgn0085398,	CG34369,	1	.
CG4824-RA	CTCCAGTCAACCGACGGATGCAGCTAGCCAAGCACAAGGACATCCAGACTCTGCTCACCAGTTTG	65	+	chr2L	16047645	16047710	16047645..16047710	CG4824-RB,CG4824-RD,CG4824-RA,	FBgn0000182,	BicC,	1	.
CG4531-RA	AGTCTCGCCAAGTTACCAACTAATGAACTAATGAGAAGGGAAAAACGAACAGATACCAGCTAGGAACTT	69	-	chr3L	16464213	16464282	16464213..16464282	CG4531-RA,	FBgn0004569,	aos,	1	.
CG40384-RA	AGTTTCAAAGGGTATTATTGGCTACTACAACCCCCGTTCCTTAGTGGGTAGCGAACGAGAGTTGGT	66	+	chr3LHet	1723928	1723994	1723928..1723994				0	no match
CG5528-RA	CCAGTGCCGTCTACGATATCTTCATCAGCTACTGCCAGAATGATCGGACCTGGGTGCTCAATGAACTGC	69	-	chr3L	20355665	20355734	20355665..20355734	CG5528-RA,CG5528-RB,CG5528-RC,	FBgn0036978,	Toll-9,	1	.
CG10601-RA	ACGATTATATCATTGCTTTTTTGATCGATTTGAGTTCGAAAAAACTAGCGGTACCCCTTCAAGGTCCTG	69	+	chr3L	12702838	12702907	12702838..12702907	CG10601-RA,	FBgn0014343,	mirr,	1	.
CG5515-RA	CCCGAGAAAGGTCTTGCCTGCAAACTGGTCTTCACATTCACAGCTACCTATCCGGATGGAGCACC	65	-	chr3R	20014050	20014115	20014050..20014115	CG5515-RA,CG5515-RB,	FBgn0039163,	CG5515,	1	.
CG13517-RA	GGAGATGAATATGGTAGGTGATCCAAGAGATTCCTTTCAAAGTCGAAATCCTTCAGAGAAGCAGG	65	+	chr2R	18590571	18590636	18590571..18590636				0	no match
CG31988-RA	ACATCGTCCCGGATAACCATGGTGCATCCTTGCTCTTCCTCCAAATTGTTCATTTGCTTGCTTACAATA	69	-	chr2L	21201647	21201716	21201647..21201716	CG31988-RA,	FBgn0051988,	CG31988,	1	.
CG9224-RA	GCGCACACAGACTTGTGCAAGGAGTTGCATAGATCGTTGTTGCTATCTTATCATGTGGCAGCAATGAGA	69	-	chrX	15498934	15499003	15498934..15499003	CG9224-RA,	FBgn0003463,	sog,	1	.
CG8457-RA	CAAGGCTCCGGATATTCAAGAACGACTGAGGAGTGAGCTACGAGAAGCCTTCATCTCCACTGCTACCCT	69	+	chr2R	8079141	8079210	8079141..8079210	CG8457-RA,	FBgn0033697,	Cyp6t3,	1	.
CG5169-RA	CCGGGAGTGAGCGACCTATTTATGAAAGAGCTGATCCACATGCTCGTTCCTGGTTACTCGGAGACGCGA	69	+	chr3R	12913337	12913406	12913337..12913406	CG5169-RA,	FBgn0086736,	GckIII,	1	.
CG6729-RA	GTGCGTTAAGGTCAAGCAGTACCAGTTCCCCATTTTCGAGCCATCGGTTAGTGATTACCGGGCGG	65	-	chr2L	10742065	10742130	10742065..10742130	CG6729-RA,	FBgn0032296,	CG6729,	1	.
CG4988-RA	GGGAGTTAACCCTTGTTGACAACACGGCTTATGATCTCAGGTCACCTGTGGTCCTGGGAGATCGCC	66	+	chr2L	11695635	11695701	11695635..11695701	CG4988-RA,	FBgn0032372,	CG4988,	1	.
CG14100-RA	CTGGAGTTTGTGCGTCTCACTCTGCAGGATCCACTTACCAGCACCCTACTAACCACAGTGCGCTC	65	-	chr3L	19583189	19583254	19583189..19583254	CG14100-RA,	FBgn0036889,	CG14100,	1	.
CG5192-RB	TAGGGAACTGACAGCTCTAGATCTACAAAAGACTCAACTATTTTGCAAATGGCACCTCAAGGAAA	65	+	chr3R	11310271	11310336	11310271..11310336	CG5192-RB,	FBgn0019940,	Rh6,	1	.
CG30418-RA	CAAAGCTTCGCTGCATTTTCGAATACAAACACTGAACTATCCGTCGTTGTAAAGCTACCTTATCCACTA	69	+	chr2R	20141994	20142063	20141994..20142063	CG30418-RA,	FBgn0050418,	nord,	1	.
CG9210-RA	ACCAGACCATCCGTCGTCGACAACCACAAGTGGCTAAGAGTATGGAGCTGTTGCCAGAAAACCAAACCA	69	-	chrX	15406615	15406684	15406615..15406684	CG9210-RA,CG9210-RB,	FBgn0022710,	Ac13E,	1	.
CG5493-RA	GGGAGACACCAATCGCCGTCAATGATGTGGCCTACATAAATGACAATCTGGGTCTGCATCGCGTGGAGA	69	-	chr2R	14504600	14504746	14504600..14504627,14504704..14504746	CG5493-RA,CG5493-RB,CG5493-RC,CG5493-RD,	FBgn0034364,	CG5493,	1	.
CG12684-RA	GCTGCTGCCAACTATTCATGTCCGCACTCAAAAGCCAAGAACAGTACATGTCCAAAAGCCAGGACCAAT	69	-	chrX	4465463	4465532	4465463..4465532	CG12684-RA,	FBgn0029717,	CG12684,	1	.
CG9022-RA	CGCCTTCTCAATGATGATCGGCGTGTTTGTCTTCTCATTCGTGTTCCTTCACTTCAAGGATGAGCCCG	68	-	chrX	9051078	9051146	9051078..9051146	CG9022-RA,	FBgn0014868,	Ost48,	1	.
CG11169-RA	CCACGGCCTTGACCTCCAGGAGATTGTCCACGAGCAGGTGAGTCGTGTCTATTCTATGTCTATTCAGCT	69	-	chr2R	19673402	19673471	19673402..19673471				0	no match
CG5964-RA	ACCGGGACAGGTCCAGAGTGACATTGTGGATCGAATGCTGGACGAAAACATCGAAGCCTCCTACC	65	-	chr3L	11783511	11783576	11783511..11783576	CG5964-RA,	FBgn0036206,	CG5964,	1	.
CG8831-RA	TGCTCCCAACGAAAGCAAGCGTATACTTGCCACCGAACTCTCAAACTACCTTAATCAGGCGACGCTGAA	69	-	chr2R	8316766	8316835	8316766..8316835	CG8831-RA,	FBgn0033737,	Nup54,	1	.
CG8605-RA	GCGGTGGACATAGAACAGATTGCCCAGGACCAGATACTATTTGCCCATCTACTTGATGAGACGCTGGCC	69	+	chr3L	7317954	7318023	7317954..7318023	CG8605-RA,	FBgn0035762,	CG8605,	1	.
CG32954-RA	AGAAGTACTTCGATGAGGTGATGGTCCAAATGGACTACATCGATGTCCTGATCAATGGTGCTACGCTGT	69	+	chr2L	14618190	14618259	14618190..14618259	CG3481-RH,CG3481-RF,CG3484-RA,CG3484-RB,	FBgn0000055,FBgn0000056,	Adh,Adhr,	2	.
CG12548-RB	GGGCGGCTCTTCAAGCCTACCTTCAGGTAGTTGGCATTTCTGCCTCTGACATCGATTCAAGGCTGTTTG	69	-	chr2L	21579204	21579273	21579204..21579273	CG12548-RA,CG12548-RC,	FBgn0016919,	nompB,	1	.
CG9279-RA	ACGTGAAAAACCTCGAGCTGACTGTGGCTGAACGGGAGAAGGAAATCAAAAGCCTCAAGTACACAGCCA	69	-	chr3L	19532344	19532413	19532344..19532413	CG9279-RB,	FBgn0036882,	CG9279,	1	.
CG13746-RA	AGCGCCGTCGCATATAGGTGACCCCCGCCCGAAACTGACGATTGTTGATCCGTTTTAGCTCATTAGTTT	69	-	chr2R	4788102	4788171	4788102..4788171	CG13746-RA,	FBgn0033341,	MrgBP,	1	.
CG1815-RA	AGCAGCATCAGAAGCAAGTACCAAAAGCTACTGGTCGCTCAGGTAAAAACAATAGCCGAATGCGCCAAA	69	+	chr3R	27502999	27503068	27502999..27503068	CG1815-RA,CG1815-RB,CG1815-RC,	FBgn0039863,	CG1815,	1	.
CG8067-RA	GGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGGTATGGCAGAGAACAATGCTGC	69	+	chr2R	9871995	9872064	9871995..9872064	CG8067-RA,	FBgn0033891,	CG8067,	1	.
CG5070-RA	GATCAGGATATGGCGCCGGCTATGGATACGCTCCCGAGAACGTGGTGAAGGTGATCAAGGTATCG	65	+	chrX	17097402	17097467	17097402..17097467	CG5070-RA,	FBgn0030824,	CG5070,	1	.
CG8100-RA	TCCTGACGGCACAGGAAGTGACTTGGAACCAATTGAGCCCCATTAGGTTGGTGACACCGAAACGAAG	67	+	chr3L	14077373	14077440	14077373..14077440	CG8100-RA,	FBgn0036410,	CG8100,	1	.
CG9261-RA	TCAGAGGTGTGTGAGGACGATAAGTCTCGTCTAAGACAATCCTACCAGAGGCAAACCACCAGATGTTGT	69	-	chr2L	6790493	6790562	6790493..6790562	CG9261-RD,CG9261-RC,CG9261-RA,CG9261-RE,CG9261-RF,	FBgn0015777,	nrv2,	1	.
CG40128-RA	CCCGCGACAAGAAAATCCTCAAGCCCGCAGGTTACGACTTTTTCGACACGCACTTTTCACAACTAGACT	69	.	.	.	.	.				0	no match
CG4433-RA	CTCGCGCTACATGTTTATCAATTCGATGCGTCAGATAAATCTCTCGGATGTGGAGTTGGAAATGCAGAT	69	-	chr3R	15844720	15844789	15844720..15844789	CG4433-RA,CG4433-RB,CG4433-RC,	FBgn0038763,	CG4433,	1	.
CG7528-RA	AATCGGCTAAGAAGCGTTCTACCAACGGGGAAGGAGACTCAAAGGACGATGGACCCTCCACTTCG	65	-	chr3L	8118820	8118885	8118820..8118885	CG7528-RA,	FBgn0029113,	Uba2,	1	.
CG32598-RA	CGGATGAGCAGCTCAATCCGAAGACTTATCGCGCTCAGGTCTCCGAGGACGAAGATTAGACATATTCAT	69	-	chrX	14210213	14210282	14210213..14210282	CG32598-RA,	FBgn0052598,	betaNACtes6,	1	.
CG1262-RA	CCTGTGTTCTGCGATCCGATTGCCCAAAAGATGTTGTTCGAAAGGAAGATATGCTACTGGGTGTATCGA	69	+	chr3L	2740013	2740082	2740013..2740082	CG1262-RA,	FBgn0020509,	Acp62F,	1	.
CG4636-RA	TGAGCAATACTTTCCACAGCATCGGTATGACGGGCAATCAACTGAACTCCCTTAGCGACTTGCCGC	66	+	chr2L	10981023	10981089	10981023..10981089	CG4636-RA,CG4636-RB,CG4636-RC,	FBgn0041781,	SCAR,	1	.
CG16756-RA	CCGAAACGCCCAAAATCTGCCTAATCTTAAGGTTATCTGTGGGATCTAGATGTAATTAATTTAATGATT	69	+	chrX	5322150	5322219	5322150..5322219	CG16756-RA,	FBgn0029765,	CG16756,	1	.
CG12610-RA	TGGTGCTCAATGTGATCATCGTGGTGTACATAATGTACCATCGACTTTACAAGGATGTGACCCATGCGT	69	-	chrX	18356145	18356214	18356145..18356214	CG32547-RC,	FBgn0052547,	CG32547,	1	.
CG16707-RD	ACCCCCTGAGCGGATTTAATACGGGCCCAGATAGTAGGAGCAGGCTCTACATTCTTGAATTACTTCCCT	69	+	chr3L	9709710	9709779	9709710..9709779	CG16707-RA,CG16707-RB,CG16707-RD,CG16707-RC,	FBgn0045823,	vsg,	1	.
CG18251-RA	CCCAGGAACGGTGGCTACGGTACAACTGTCAACTGCCGTCATTACTCTAATCAATGAAACATGACCCGT	69	+	chr2L	5158088	5158157	5158088..5158157	CG42768-RB,CG42768-RF,	FBgn0261836,	Msp-300,	1	.
CG13811-RA	CGGAGTACGCCTATCAGCACCTGAGCAGCGTTGCCACAACCAATTCGAGCACATCTTTGGAGAGC	65	-	chr3L	20156736	20156801	20156736..20156801	CG42348-RC,CG42348-RD,CG42674-RA,CG42674-RB,	FBgn0261556,	CG42674,	1	.
CG13365-RA	TACATTTTGCATCTTTACATAACGAACTTAGTTATAGCAGCACATAAGCACACAATGGCACTGTT	65	-	chrX	515167	515232	515167..515232	CG13365-RA,	FBgn0029529,	CG13365,	1	.
CR32881-RA	TCTGGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACACT	69	.	.	.	.	.	CR32880-RA,CR32908-RA,CR32914-RA,CR32881-RA,CR32877-RA,CR32999-RA,CR31853-RA,	FBgn0043021,FBgn0003938,FBgn0003933,FBgn0043022,FBgn0003936,FBgn0003934,FBgn0003935,	snRNA:U5:38ABb,snRNA:U5:63BC,snRNA:U5:14B,snRNA:U5:38ABa,snRNA:U5:35D,snRNA:U5:23D,snRNA:U5:34A,	7	.
CG11289-RA	TGCAGTCGAAAAACTGGGGTTTGACCTTATCCACCAACAATCTGACGCATTGGAAACTAGCGAAGGCCA	69	+	chr2L	7069210	7069279	7069210..7069279	CG11289-RB,	FBgn0031887,	CG11289,	1	.
CG16718-RA	TGGTGCATTCCGGACATGAGCGTTGAACTGCGTGACCAAATCCGACGCGAAGTTTATGTGACCAATGAA	69	-	chr3R	15459970	15460039	15459970..15460039	CG16718-RA,CG16718-RB,CG16718-RD,	FBgn0038721,	CG16718,	1	.
CG8198-RA	TAAGCACTCATATTTTCGAATTTTTTTTGTGGAAATTCTCGAGTCAAACAAATTATATAAAGGGCACGA	69	+	chrX	15628328	15628397	15628328..15628397	CG8198-RA,	FBgn0026666,	l(1)G0136,	1	.
CG18779-RA	TTGCTTTCACTGTAAGCAGCTTTAAACCCACCAATTCTGCAACACTCTTTGTTATCTTCCCCAACACTT	69	-	chr3L	6123575	6123644	6123575..6123644	CG18779-RA,	FBgn0086611,	Lcp65Ag3,	1	.
CG5546-RA	GGCGTCGGTGGGAGTCTGCTTATGTCGCAGTTTTAGGCAGGATCCTTTAGCAAAATAGACTTGGCTCAT	69	-	chr3L	17837320	17837389	17837320..17837389	CG5546-RA,	FBgn0036761,	MED19,	1	.
CG1208-RA	TGCCGTAATCTTCTTCATGAACGAGATCTTCGAGTCTAGCAGCACGCTGAATCCCAACGTCTGCACCAT	69	+	chr3R	1663446	1663515	1663446..1663515	CG1208-RB,CG1208-RC,	FBgn0037386,	CG1208,	1	.
CR32665-RB	CGACACGTTGCGCCTATGACAATCCTAATTCCATCCTCTTCTCTTTCGTTTAGGTAGCTCGGATGGCCA	69	+	chrX	11473649	11473718	11473649..11473718	CR32665-RB,	FBgn0019660,	roX2,	1	.
CG9491-RA	AGGCACCCAAGTTCACCCACCCTTTCGACTACCAGCTCAACGAGTTCTACCAGCGATCATCAAAGAAGA	69	+	chr2L	6329129	6329198	6329129..6329198	CG9491-RA,CG9491-RB,CG9491-RC,	FBgn0021873,	Gef26,	1	.
CG3973-RA	TCAGAAGACAGGATCCCGGAGAATCAGAAAATGGAATGGGAAAGACGAAGATCGGCCATTGAAAACGAT	69	+	chrX	6544669	6544738	6544669..6544738	CG3973-RA,CG3973-RB,	FBgn0029881,	pigs,	1	.
CG13114-RA	CGGAGATCAAGCCATATGGTGGTCCCGATTCTGGACCCGATAAGCCATCGTCCACGTTCGATCTG	65	+	chr2L	9547166	9547231	9547166..9547231	CG13114-RB,	FBgn0032127,	CG13114,	1	.
CG9460-RA	AATCAAGGACCTCATTGCTCCGGAATCTCTGGACGCAGATACTTCGGCCATCCTGGTCAATGCCATCT	68	+	chr2R	2774529	2774597	2774529..2774597	CG9460-RA,	FBgn0033115,	Spn42De,	1	.
CG13802-RA	ATGCTGCTGTTTCCACTAACGACATCAGCCTGGTCGAGAAGCTACATTTGCAGCCCAGTCCAAGG	65	+	chr3L	2300155	2300220	2300155..2300220	CG13802-RA,CG13802-RB,CG13803-RA,CG13803-RB,	FBgn0035330,FBgn0035329,	CG13802,DmsR-2,	2	.
CG5344-RB	CATCATCAACAATATGATGCGACTGAATCTGCGCGTAGAGGACTTCCAGATCGAGCACACACGCC	65	+	chr3R	7410208	7410273	7410208..7410273	CG5344-RA,CG5344-RB,	FBgn0037917,	wkd,	1	.
CG4999-RC	GTGAAGAGCGACGATCCCTCCTAGAACTCCCCCAAAAAATACAACGCCCTACCGAACACCGCGAC	65	+	chr3L	8924134	8924199	8924134..8924199	CG4999-RB,CG4999-RA,CG4999-RC,	FBgn0035936,	Tsp66E,	1	.
CG7562-RA	CACGGGCAGTTTAGTTCCTACGAACCGGAGATGTTTCCAGGCCTAATCTATCGCATGGTCAAGCCGC	67	+	chr2L	8073527	8073594	8073527..8073594	CG7562-RA,	FBgn0010287,	Trf,	1	.
CG6553-RA	GATGCAATCCTCACTGTAGGATCAAGGGTAGCCAATGGCACCCGTATCTACTACGACTGCCCGGC	65	-	chr2R	9742556	9742621	9742556..9742621	CG6553-RA,	FBgn0033880,	CG6553,	1	.
CG13771-RA	GCGGATGCAGATGTGTCCCTCTCCGGTCACGTTTCATATACGGACAATAACTTCATGGAGGTCACGGCA	69	-	chr2L	6662882	6662951	6662882..6662951	CG13771-RA,	FBgn0031844,	CG13771,	1	.
CG3022-RA	TCGCGGTCGTTTAAGCTTAGTTTTTGACCAAATCGCATCTCTCTGTGTAGAACCTACTCCGCAATGTGA	69	+	chr2L	761523	761592	761523..761592	CG3022-RA,CG3022-RB,CG3022-RD,	FBgn0031275,	GABA-B-R3,	1	.
CG5581-RA	AGCGACGACACTGATTCCAAGGAAGACCAGTACGAAAGCACATTTGCCAGGAATCTAGCTCGTTTGCGA	69	-	chr2R	14163555	14163624	14163555..14163624	CG5581-RA,	FBgn0003022,	Ote,	1	.
CG7111-RA	CTGCTGTGGGACCTCAATGACGGCAAGAACCTGTACACTCTGGAGCACAACGACATCATCAACGC	65	-	chr2L	7825941	7826006	7825941..7826006	CG7111-RA,	FBgn0020618,	Rack1,	1	.
CG12841-RA	CTGTACTGGGATGCTGTGGAATCTGCATGGAGAACGTGTGCATGACCGCAACGTACGGCTTCTTG	65	+	chr2R	2931328	2931462	2931328..2931381,2931450..2931462	CG12841-RA,CG12841-RB,	FBgn0033133,	Tsp42Ek,	1	.
CG32031-RC	CTGAAACGAGAATCAATCAATCAATCCCAATCACCGAAAATCAAAAGCAATAGCGTTAAGCCAAGCGTG	69	-	chr3L	9044574	9044643	9044574..9044643	CG32031-RC,	FBgn0000116,	Argk,	1	.
CG40143-RA	GGCACCCAGTACCTCACACCCCAGGAATCGAAACTCAAAACAGAAGCCGAAATGGAAACTGCACGAGAT	69	-	chrXHet	7137	7206	7137..7206				0	no match
CG32718-RA	TGAGGAAAATGCCTCTTGGACTACCCATTTGGACACCATTGTTCATCCTTTTCTTGCTTTTCCTGGCCG	69	+	chrX	7672308	7672377	7672308..7672377	CG32718-RB,	FBgn0052718,	CG32718,	1	.
CG5458-RA	ATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTATCGCTGCGGGAAGCGTTG	65	+	chr2L	13183938	13184003	13183938..13184003	CG5458-RA,	FBgn0032478,	CG5458,	1	.
CG11321-RB	AGGACCCTGGGACACCGATGAGATCTACAAGAACATGTGCTCCGAGGTAGGTGTTGGCTATCATCAGTT	69	-	chr2L	6760536	6760605	6760536..6760605	CG11321-RB,	FBgn0031857,	CG11321,	1	.
CG8102-RA	GCCCGCTTTGTTAAGGGTCAGACACATCCCCACGAGATCGATTGGACGCTGGTCATTGCCGATAAAATG	69	-	chr2R	11184461	11184530	11184461..11184530	CG8102-RB,CG8102-RA,	FBgn0034007,	CG8102,	1	.
CG7423-RA	GAGTTCTTTGTGCGGATCGGCGCGGAGGTGGACAGGAAGGACAAGTACGGCATCACACCGCTCCT	65	-	chrX	18976982	18977047	18976982..18977047	CG7423-RA,	FBgn0030982,	CG7423,	1	.
CG13869-RA	CCAGTTGGGTCAAAATGGTAGTGCCTGTCTGGATCGTCTGATCTGCGAGAATGGTCAGGTGGATGAGCA	69	-	chr2R	16126321	16126390	16126321..16126390	CG13869-RA,CG11099-RA	FBgn0034486,FBgn0034485	CG13869,CG11099	2	.
CG3281-RA	TCCGCGTGTCTTTGCCAAAAGTGAATCTCTGACTCGTCATTTTTCCCAAGCCCACAAACTGACAGCGGA	69	-	chr3R	7787689	7787758	7787689..7787758	CG3281-RA,	FBgn0260741,	CG3281,	1	.
CG12688-RA	CCCTTCGAGGACGCCTACCCACGCTATGCAGGACTTAGAGGACACTCCGATTATCACCATCGACG	65	+	chrX	4277075	4277140	4277075..4277140	CG12688-RA,	FBgn0029707,	CG12688,	1	.
CG1865-RA	TGTTCGCCATCAAGTACAAGGACTCAATCGCCTTTATCGGACACATTGCTAACTATGCTTATGTCTAAG	69	-	chr2R	3039234	3039303	3039234..3039303	CG1865-RA,CG1865-RB,	FBgn0024293,	Spn43Ab,	1	.
CG12724-RA	CTACCGCAACTCCTACCGCTTCCGGCTCGGCCACGCCCACGCCCTCGCCAACATCACCCAATCCG	65	+	chrX	13212787	13212852	13212787..13212852	CG34359-RC,	FBgn0085388,	IP3K2,	1	.
CG13704-RA	CGTGCGCGTTACAAACTTGGCTAACAGCTAAAAGCGAACATAAGTTTTTCGAAAGAACCGACGAAAACG	69	+	chr3L	4898921	4898990	4898921..4898990	CG13704-RA,	FBgn0035583,	CG13704,	1	.
CG8515-RA	GCCGGCTATTCCCGAGGAGATACAGAAGGGTTTGGATCAGATCTACGCTGGCATTAAACTGCAGCAGGA	69	+	chr2R	8302180	8302249	8302180..8302249	CG8515-RA,	FBgn0033731,	Cpr49Ah,	1	.
CG6854-RB	TGAGCTCAGCGGTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAGTACTTGTCGCGGCCTC	65	+	chr3L	15105448	15105513	15105448..15105513	CG6854-RC,CG6854-RB,	FBgn0262707,	CTPsyn,	1	.
CG10073-RA	ACCTTGTTGGCCATAAGCGCTGTGACCATTTACACGGCTAGCTCCACCCAAATTGGTTTTCCATACCGT	69	+	chr2R	15271528	15271597	15271528..15271597	CG10073-RA,	FBgn0034440,	CG10073,	1	.
CG10120-RB	CGCACATTTGTCGTCTAGCATAATATCCAAATTTGTATCGCGGCTAATTAACCACAACCACACACTATC	69	-	chr3R	8539007	8539076	8539007..8539076	CG10120-RB,CG10120-RA,	FBgn0002719,	Men,	1	.
CG11158-RA	GGCCGGAAAGTGGACGACATTCATGGCAAGAAGATAAATGTGCACATCATTAGGCGCCTCACTAGTGGA	69	+	chrX	13577959	13578028	13577959..13578028	CG11158-RA,	FBgn0030511,	CG11158,	1	.
CG31875-RA	TCCTCGGCGTTGGAGACAGATGACCAACAGGCCATCCATAGATGATGCTTTGAATCGGCATTCGTGAAT	69	-	chr2L	9995981	9996050	9995981..9996050	CG31875-RA,CG31875-RB,CG31875-RC,CG31875-RD,	FBgn0051875,	CG31875,	1	.
CG9361-RA	TTGGTTTCGGCGATTATGTGGCATTGCAGAACGACCAAGCTCTAACTAATAAGCCTGGCTATGTGGCGC	69	-	chr3R	5236886	5236955	5236886..5236955	CG9361-RA,	FBgn0037690,	Task7,	1	.
CG12496-RA	CAGAGGTAATTTCAAACAGATCCTCGGAAAGCCACAAAAATGAGAAGAGAAACTAAATGCGAGATGGAG	69	-	chrX	2303697	2303766	2303697..2303766	CG12496-RA,	FBgn0040385,	CG12496,	1	.
CG6141-RB	ACGGTCATTGAGATCCGTAACTTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGGCTCCTGGCG	67	-	chr2L	11003091	11003158	11003091..11003158	CG6141-RA,CG6141-RB,	FBgn0015756,	RpL9,	1	.
CG6684-RA	GTTATACGGCTGGGAATGTAAAATATCATATAGCCCAAAAACTATTGTTCTTACAAATCGAACAGCTGA	69	-	chr3R	7040979	7041048	7040979..7041048	CG6684-RA,	FBgn0086472,	RpS25,	1	.
CG6673-RA	TGACCCAGGATGAGGTTGTGCAGAAGACAGCTTTGGATGTCCAGTTGCATGCTGAGTTCCAGAAATCGA	69	-	chr3L	8514684	8514753	8514684..8514753	CG6673-RA,	FBgn0035906,	CG6673,	1	.
CG18233-RA	ATTCAACGCCAGATCCACGATCCCTGCACTCTGTGTGTCCAGTTTTAGTGGGTTCACGATGGAGTGAGT	69	+	chr3L	18600252	18600321	18600252..18600321				0	no match
CG16747-RC	AGAAAGGGAAACGCATATGCATAGAAGCTAATTACATAGATCAGCAAAAAGGATCCACATACACGCTAT	69	-	chr2R	8054210	8054279	8054210..8054279	CG16747-RA,CG16747-RC,CG16747-RB,	FBgn0014184,	Oda,	1	.
CG12750-RA	CGGATGGAGAGTAGTCGCAGTGAAAAAGACAGTCGTCGTGGTGACCGTTCCTCCAGAAACGAGAGATCA	69	-	chr2L	18444905	18444974	18444905..18444974	CG12750-RA,	FBgn0086707,	ncm,	1	.
CG32590-RA	CGCAAGGTTACCCCAGCGATTTTCGAGAAACGCGATGAAGTCTTTCAGCTGCAAAATAATCTCCAGGGA	69	-	chrX	14732879	14732948	14732879..14732948	CG32590-RA,	FBgn0052590,	CG32590,	1	.
CG5219-RA	CAGGACCGCCTAGTTCTGGCCCAGAAGTACGGCTATCAGCTGCCCAAAATTGAGGAAGATTCCGC	65	-	chr3L	20428367	20428432	20428367..20428432	CG5219-RA,	FBgn0036990,	mRpL15,	1	.
CG9995-RA	CGAAGGACGCTAGTGGGCATTAGTATGCGCCTTAGCCAATTGCCGGCTAATTCCCAATCAAAATTACTT	69	+	chr3R	24559901	24559970	24559901..24559970	CG9995-RA,	FBgn0027655,	htt,	1	.
CG12395-RA	TCCGCGCTTGGTGGATCTCTTCAATTATCCGAAGAAGAGTAGTGTTCAGCTGAAGTTGGCCAATTGGGA	69	-	chrX	15956592	15956661	15956592..15956661	CG12395-RA,	FBgn0030722,	CG12395,	1	.
CG4479-RA	GAGCCTGTGGAATGGCATAATTTCCATTTCTGCAAAAGATGAAAGTCCTAAAGGTCTCACTGAAATGTG	69	.	.	.	.	.	CG4478-RA,CG4479-RA,	FBgn0013301,FBgn0013300,	Mst35Bb,Mst35Ba,	2	.
CG8167-RA	GCTCCGTGGTCAGAAATTAGGCCTCCTAATGCGAAAATCATTGACCCCAACTGACCTGGTCGACGCGAT	69	+	chr3L	9793330	9793399	9793330..9793399	CG8167-RA,	FBgn0036046,	Ilp2,	1	.
CR31511-RA	GGAGCCACAAGATATTCAACCATGGAAAGGGACCCGAGATTGCTCACAGCCAGCTAGCAAGTGCGTAAA	69	+	chr3R	3352319	3352388	3352319..3352388	CR31511-RA,	FBgn0027934,	alpha-Est4aPsi,	1	.
CG8870-RA	TGCCCTCAAAACAGTGAGACTGGGCGAACATAACACGTCCACAAATCCCGATCGGGCTATTGTGAATGG	69	+	chr3R	9206345	9206414	9206345..9206414	CG8870-RA,	FBgn0038144,	CG8870,	1	.
CG5465-RA	GTGCTGGAGCCCAACTCGATGAAGCAGCTTAATCACACCCAGTTTGATAGGTTATCTGACGCCAGTGGA	69	+	chr2R	18071927	18071996	18071927..18071996	CG5465-RA,	FBgn0034707,	MED16,	1	.
CG12581-RA	CTATGGGTCCGAACACACTACAGCGGAAGCATGCCATGACAATGTCAAATGGCGGATTGCATGGC	65	+	chr3R	9607	9672	9607..9672	CG12581-RB,CG12581-RA,	FBgn0037213,	CG12581,	1	.
CG30501-RA	ACTGGTTGAGCCGGGATGGGAAGGCAAAAAGCAAAAGATGGCAAGGAAAACTTAAGAAATTGACACCGT	69	+	chr2R	3234060	3234129	3234060..3234129				0	no match
CG5121-RA	GCTGAAGCCCTACATGCTGATCAAGGACGAGAATCAGGACCTGAGCATCGAGATTCAACGCAAGGAGGC	69	+	chr3R	21303035	21303104	21303035..21303104	CG5121-RA,	FBgn0039337,	MED28,	1	.
CG8445-RA	CGGGTGAGGCGTTTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGATGGCTTGA	69	-	chr2R	12082664	12082733	12082664..12082733	CG8445-RB,CG8445-RA,	FBgn0262166,	calypso,	1	.
CG14482-RA	TTTGGTGCGTGTGAAAAGTTATTAAATCAACAAAAATGGCTTTCCGCATACCTTTTGGCAAGAAG	65	-	chr2R	13460179	13460244	13460179..13460244	CG14482-RA,	FBgn0034245,	CG14482,	1	.
CG13809-RA	GCGCCACCGATCGAAGCTCACTTTAATATATACACCAGGATAGCACTGGACTGTTTGGCTCTGAGGGAG	69	+	chr3L	2234428	2234497	2234428..2234497	CG13809-RA,	FBgn0035317,	osm-1,	1	.
CG5108-RA	TCGATTGATGTCGGTGTATCCCACACACTATGTCGAACCAATTGTACAAAAATATAAACAACTAGAGCA	69	+	chr2L	10386867	10386936	10386867..10386936	CG5108-RA,	FBgn0032236,	mRpS7,	1	.
CG18287-RA	GCCGAGACCAGGACTACTGCGCTTCAGGAACAATCCGCGTGGTATTAAGTTTCGGGAAAAACTGTGCAA	69	+	chr3R	25498212	25498281	25498212..25498281	CG18287-RA,	FBgn0039679,	ppk19,	1	.
CG32770-RA	GGCCCATTCTGGATGGCATATACTTTTGCTTTATGAGCCTGTCCACCATTGGTTTTGGCGATATGCTGC	69	+	chrX	4798503	4798572	4798503..4798572	CG42594-RA,CG42594-RB,	FBgn0260971,	CG42594,	1	.
CG7747-RA	ACCTGGAGCTCTTCTGCGATCAAACTCCTCGAGCCTGCGATAACTTCATCAAGCATTGCGCCAATGG	67	-	chr2R	12180539	12180606	12180539..12180606	CG7747-RA,	FBgn0034109,	CG7747,	1	.
CG1889-RB	ACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTGCGATCAGAAGGTCAGAAACGGTGGTTGGACAAT	69	+	chrX	9859971	9860040	9859971..9860040	CG1889-RA,CG1889-RB,CG1889-RC,	FBgn0030164,	CG1889,	1	.
CG18801-RA	GCCCCGCTTAGCAGACGATACCCATCCGGCTACTTTGTATATGCTGGAAGTTTCCTATACGTCTCAGCA	69	-	chr2L	15769627	15769696	15769627..15769696	CG18801-RA,	FBgn0041627,	Ku80,	1	.
CG12052-RE	TGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATATCGAATTCATTGCTCAAGGAGCGAT	69	-	chr2R	6407936	6408005	6407936..6408005	CG12052-RD,CG12052-RE,	FBgn0005630,	lola,	1	.
CG32732-RA	TCTCGCCGGAGCTTTACAATACGCCCAAGAGCATCGCAAGGTCTAGGGATTTAAGCAGACAACCCACAA	69	-	chrX	6852458	6852527	6852458..6852527	CG32732-RA,	FBgn0052732,	CG32732,	1	.
CG8194-RA	TGCAAGACTCGTCGAGGGAGATGTCTGTGCAGGATCACAACTGGGATGTGCTGATTTTCACGCAACAA	68	+	chr3L	7964151	7964219	7964151..7964219	CG8194-RA,	FBgn0010406,	RNaseX25,	1	.
CG3938-RB	ACACTATCCAGAATTCAGTGGTGTGACGCTCTCACAAACCAAGTTGGGTGCCTCAAAAATGAAACAACA	69	-	chr2L	15728429	15728498	15728429..15728498	CG3938-RC,CG3938-RA,CG3938-RE,CG3938-RD,CG3938-RB,CG3938-RF,	FBgn0010382,	CycE,	1	.
CG12740-RA	CGACAAACTATATTATTGTTGATACAAAAGGTATCTTTAGATCAATCAATCTTTGTTTGCCTAAATGAT	69	-	chr3L	3220914	3220983	3220914..3220983	CG12740-RB,	FBgn0035422,	RpL28,	1	.
CG16825-RA	AGCGTCTGTTTGGTTTTCTTCGGACCCTGGACCATGTACAACTCCCAGAAGTTGTTCCTGCACCACAAG	69	+	chr2L	13307488	13307557	13307488..13307557	CG16825-RA,	FBgn0032503,	CG16825,	1	.
CG32811-RA	GCCACACCAACCAGAGTATCCGGATTATGAGGCGATGAGAAGACCGGTAGAGTCGTTGCGCATGGTGAA	69	-	chrX	1192257	1192326	1192257..1192326	CG32811-RB,	FBgn0052811,	CG32811,	1	.
CG10595-RB	TCCGCCGTCTCGTTCCTACACGATCACCGGGAATTCGAAAATAAGCTATCCCCAAAACCGGGTCATGAA	69	+	chr2L	8487986	8488055	8487986..8488055	CG42840-RA,CG42840-RB,CG42840-RC,CG42840-RD,CG42840-RE,	FBgn0262029,	d,	1	.
CG9626-RA	GCAAATGCGAGCAACAAGATTGAGCACAAGATAGCCAAGACTAGCTCAGGACCCAGTTTCTCCCGGGT	68	-	chr3R	4120684	4120752	4120684..4120752	CG9626-RA,CG9626-RB,CG9626-RC,	FBgn0037565,	CG9626,	1	.
CG14414-RC	TTTTAATTTTCATTTATTTTCGCACACAAAATGGCTAGCACTGTCCGTAAATCCGCGTAGAAACG	65	+	chrX	14474668	14474733	14474668..14474733	CG14414-RC,	FBgn0030571,	CG14414,	1	.
CG9500-RA	TGGCGCACTGAGAGTTATTCCTACAAGGTGATGCAAATGATGGTTCGACCGAAATGCCATTGCTCAGGA	69	-	chr2L	6357253	6357322	6357253..6357322	CG9500-RA,	FBgn0031804,	CG9500,	1	.
CG16876-RA	AGTTGTGTACCGACTGCAGTTGCGAACGGACAAGTCAAACTGGAAAATGAAATTCATCTGGGCCCTGAT	69	+	chr2L	14047584	14047653	14047584..14047653	CG16876-RA,	FBgn0260011,	nimC4,	1	.
CG6619-RA	CTTTGTTTTGGGATCCCACAAGTGAGACGGCTCAGTCCCGACAGCACTCCACAAAATCCAGGCAG	65	+	chr3L	6073675	6073740	6073675..6073740	CG6619-RA,	FBgn0035676,	CG6619,	1	.
CG4371-RA	CGTGGAGAGGTGGCTTAAGAATGCCCCAAAAGTAACTCCTGGATGGGAGCAAAATCTTGAGAGTCTGCA	69	+	chr3R	8204812	8204881	8204812..8204881	CG4371-RA,	FBgn0010043,	GstD7,	1	.
CG31998-RA	GTCGAACCCTTGAGTCACCAATTGCTTCTGCTGAAACTCAACGAATAGTCGCCAATGGATCGCAGACGT	69	-	chr4	219108	219177	219108..219177	CG31998-RA,CG31998-RB,	FBgn0051998,	CG31998,	1	.
CG32853-RA	GGCGCAAGTTGGCTACTTGACCAATTAACGCGATTGGCTGAGGATTCTCACCTTTTGCTGGACACTATA	69	+	chr3R	9180964	9181033	9180964..9181033	CG32853-RA,	FBgn0045442,	mthl12,	1	.
CG6589-RA	TGGAGGGGAACCGAAGGGAGTAGGATCTGGAATGTGCAATAACCGGGATGTAAGTGCCTATGTGGATAC	69	-	chr2L	11611406	11611475	11611406..11611475	CG6589-RA,	FBgn0032368,	spag4,	1	.
CG12006-RA	GCCCGCCTGGTATCTGAGCACAGTGCATCAGAAGGGACCCATTGAACTGATGCCCAAGTTGAGAGAAAT	69	+	chr3L	3812903	3812972	3812903..3812972	CG12006-RA,CG12006-RB,	FBgn0035464,	CG12006,	1	.
CG13692-RA	AGTATGGCCCCCTTGTGGAGGCAGTATTTCGAGGATGTCAAGAAGCTGATCTACGTCGTGGACACCTCT	69	+	chr2L	422054	422123	422054..422123	CG13692-RA,	FBgn0031254,	CG13692,	1	.
CG6898-RA	GTCCATTCCCTTCTTGCTTAACCGTTGCTATCGCTGGACGGAAAACCAGACGAACGCACGATCCG	65	+	chr3R	12132104	12132169	12132104..12132169	CG6898-RA,	FBgn0038412,	Zip3,	1	.
CG32649-RA	GCATGAATTGCGTGCCCTTCTACAAGGACATCGTTCTGGGGAAGTTCAAGGACTAGTGAGCACAGCTCA	69	-	chrX	12792922	12792991	12792922..12792991	CG32649-RA,	FBgn0052649,	CG32649,	1	.
CG5592-RA	GTCACATGGATGACTGTGGCCCTAGCATACGATGCCCATGTTCGCGTAGTCGAAATCCTGGACACAGAT	69	+	chr3L	5891919	5891988	5891919..5891988	CG5592-RA,	FBgn0035645,	CG5592,	1	.
CG14199-RA	CTCTTCCCCAGCTTGATAGACCGCAACAAGACCGGATTCATGGGCACCTTCTGGAAGCTGGCAAG	65	-	chrX	19388654	19388794	19388654..19388684,19388759..19388794	CG14199-RB,	FBgn0040890,	ksh,	1	.
CG9453-RC	ACGCAGTCGTTGTACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAAGTGGAA	69	-	chr2R	2764952	2765021	2764952..2765021	CG9453-RB,CG9453-RA,CG9453-RD,CG9453-RE,CG9453-RF,CG9453-RG,CG9453-RH,CG9453-RI,CG9453-RJ,CG9453-RK,CG9453-RL,	FBgn0028985,	Spn4,	1	.
CG8931-RA	CGGTCTATTCGATGTATTCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGCAAAAGGGCC	68	+	chrX	15878707	15878775	15878707..15878775	CG8931-RA,	FBgn0030717,	CG8931,	1	.
CG8116-RA	TGTGCATGTGCGTTTGAGGTTCCTTTCCTTTTTATATAAGCCCCTCGTCTCTTGCCAACAAACCAACAA	69	+	chr3R	4541986	4542055	4541986..4542055	CG8116-RA,CG8116-RB,CG8116-RC,	FBgn0037614,	CG8116,	1	.
CG30127-RA	CCTCGCCCAGCGATCACTCCTACGCCGAGCTAAACAAGTTCGAGGACATTGCTAGCAAATTTGAGCAGA	69	-	chr2R	15213730	15213799	15213730..15213799	CG30127-RB,	FBgn0050127,	CG30127,	1	.
CG10153-RA	CGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACGATCTGGGTCAAGATGTAGGCA	69	-	chr2R	10645026	10645150	10645026..10645055,10645110..10645150	CG10153-RA,	FBgn0033962,	CG10153,	1	.
CG3999-RA	GGTCGCATGGACAAGGCAGTCAATCCACTGAAGATGTCTCCTCACACCCAAGCTCAGGTGATCTCG	66	+	chr3R	6080527	6080593	6080527..6080593	CG3999-RA,	FBgn0037801,	CG3999,	1	.
CG32039-RA	TCAGAAAAGAACATCTTGGATTCAACACCATACAAACTTTTAGCTGGCGACCAAAATGTACAACCAAAA	69	+	chr3L	9352744	9352813	9352744..9352813	CG32039-RA,	FBgn0052039,	CG32039,	1	.
CG7009-RA	CGCTCCCGATTCTACTGGAATGCACGACTTTGACTCGTACGTTCAGGGCGAACTACTTCTCTCCGCC	67	-	chr3R	16959057	16959124	16959057..16959124	CG7009-RA,	FBgn0038861,	CG7009,	1	.
CG10681-RA	AATGCCTGAGCGAAATGAAGAAGGATCTGGATTACATATTCCGCAAGATACGGATCATCAAGCAGAAGC	69	+	chr3L	12495204	12495273	12495204..12495273	CG10681-RA,	FBgn0036291,	CG10681,	1	.
CG5160-RA	TCATCGCTGGTCAAGTTGGGTCTGCATACCAATAAACAAAAGACTCTGAAGGTTATGGTCCTGGGCCAA	69	-	chr2L	7392292	7392361	7392292..7392361	CG5160-RA,CG5160-RB,	FBgn0031906,	CG5160,	1	.
CG10112-RA	GCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATCAAACTGGATAAGGCCGACGATGACAAGCAC	69	-	chr2R	10400217	10400286	10400217..10400286	CG10112-RA,	FBgn0033942,	Cpr51A,	1	.
CG30164-RA	CCTTGAGCTGGCGTATGATTCACTGACGACACTTAGCCTGGGTGAGTACGGATGGTTAAGTGCTCCCAT	69	-	chr2R	20310403	20310472	20310403..20310472				0	no match
CG9310-RA	TTGCAATAGGACACCCCTTAAGCACACAACCCATACACATACAGGCCCTCTCTTGCTGTACTCCCCACC	69	-	chr2L	8687680	8687749	8687680..8687749	CG9310-RA,CG9310-RB,CG9310-RC,CG9310-RD,	FBgn0004914,	Hnf4,	1	.
CG8889-RB	CGGAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATTTTCTCAGGACACTGGCA	69	-	chr2R	7913775	7913844	7913775..7913844	CG8889-RA,CG8889-RB,CG8889-RC,	FBgn0259985,	CG8889,	1	.
CG10079-RB	ACCGACTGCACGGATGAGATACCCAAGCTGAACCGCTACTGCAAGGATCCTAGCAACAAGAATTCGAGT	69	+	chr2R	17446080	17446149	17446080..17446149	CG10079-RA,CG10079-RB,	FBgn0003731,	Egfr,	1	.
CG12674-RA	AGCAACAAAAGGCGATGATTGATGCGAGCTTCAAGGATATTGGCAAACCCCTCTACCGACATCCCACCA	69	+	chr2L	2080629	2080698	2080629..2080698	CG12674-RA,	FBgn0031388,	CG12674,	1	.
CG30118-RA	TGCTCCTCAATGGTCAGTAGGCTTCCGAACTGTCCCTGAATCTCTTTTGCACACGCATATTACACGGCA	69	-	chr2R	14318285	14318354	14318285..14318354	CG30118-RA,CG30118-RB,CG30118-RC,	FBgn0050118,	CG30118,	1	.
CG7262-RA	AAAATCGGGCACATGCAGTTCACATGGCCATAGCGCTGTTTGAGCTAGGACTTCTAGGCAGTGCG	65	-	chr3R	10722464	10722529	10722464..10722529	CG7262-RA,	FBgn0038274,	CG7262,	1	.
CG5484-RC	CCATCGTGCAAGACATGGCTATGCAGTACGGTCAGAAACTAGCGGATCAGGGCAAGCAGATCATGGAGA	69	+	chr3R	22544409	22544478	22544409..22544478	CG5484-RA,CG5484-RB,CG5484-RC,	FBgn0039450,	CG5484,	1	.
CG11226-RA	CAGAGCGTTGGACTTGCCCGGGATAATACGATCATGACCTCTGCCAAAAATACGAACCCTTCCTGTCGT	69	+	chr3L	22830395	22830464	22830395..22830464	CG11226-RA,	FBgn0037195,	CG11226,	1	.
CG8548-RA	TTGCTGGGCCATAGGCTACCTGTCAGATGGTCCCAATGATAAAATCCAGGCTGTAATTGATGCGGGTGT	69	+	chr3L	19802011	19802080	19802011..19802080	CG8548-RA,	FBgn0024889,	Kap-alpha1,	1	.
CG8501-RA	GCACTGCGAGAAAACGCCCTCCAAAAGCAAGAGACTACACTGTCGTTTGGGATAAACTCGCATCTCGCT	69	+	chr2R	8271209	8271278	8271209..8271278	CG8501-RA,	FBgn0033724,	CG8501,	1	.
CR14753-RA	ACCTGTGCACAGTGTTCACTACGATCCGCACTTATATCCACATCCAAAACTCTTCGATTCCAGCCGCCT	69	+	chr2R	4457419	4457488	4457419..4457488	CR14753-RA,	FBgn0033303,	Cyp6a15Psi,	1	.
CG14004-RA	AGACGGTAAGGGCATGGCAACAGGAATCGGATGTGGAGCACCGAAAACAACATAAGCAGCGATGG	65	+	chr2L	5845370	5845435	5845370..5845435	CG34381-RA,CG34381-RB,	FBgn0085410,	CG34381,	1	.
CG3984-RA	TGCGGAGGTCAAACGGGGATTCAATGCAATCCTTCCAATCCTGTGACTACTGTTGTTCCTGGTACCCCC	69	+	chr3R	10963114	10963183	10963114..10963183	CG3984-RA,	FBgn0038291,	CG3984,	1	.
CG16801-RA	TTGCTGCGCATGATCAGCTCCCACAAGATTGAGTCCATCTATTTTCAGCGCACTATTGGGAACACGCCC	69	+	chr2R	11226720	11226789	11226720..11226789	CG16801-RC,	FBgn0034012,	Hr51,	1	.
CG7191-RA	CTGCACGAGAATCGCAAGGGCAATCACAGCAAGACGGTTAACTTCTGCAATCGAAAGCGTCCGGC	65	+	chr2L	7774294	7774359	7774294..7774359	CG7191-RA,	FBgn0031945,	CG7191,	1	.
CG3064-RB	ACAGGAGAAAGGAGGGGAAGTAGAACAAGCCGTCCCTACCACAACTGCAGTTACAGCAAGCACTACAGC	69	+	chrX	1342349	1342418	1342349..1342418	CG34387-RC,CG34387-RE,CG34387-RF,	FBgn0259108,	futsch,	1	.
CG12052-RO	ACCTCCAAAACCATAACCAACCCAAATGAACCCAATTGTTGTGGAAAAGCTGGTCCACATTCCTGCACA	69	-	chr2R	6379267	6379336	6379267..6379336	CG12052-RO,	FBgn0005630,	lola,	1	.
CG13713-RA	GATGCTGAAGCCCACTGTCACCTATCATCTGTTCCTGTACCGTGTCGAGTTGGCCCGTCGGAATG	65	+	chr3L	4697692	4697757	4697692..4697757	CG13713-RA,	FBgn0042199,	CG13713,	1	.
CG1817-RA	AGGAGCTGTATATGCACGATGAGTTCGAGACCCACATCGATACCAAGTCGAATAATGCCAACGATGACA	69	+	chrX	11568597	11568666	11568597..11568666	CG1817-RD,CG1817-RB,CG1817-RA,	FBgn0004370,	Ptp10D,	1	.
CG12971-RA	TCTCCATTGAAGCTGTACTCGTATAAATATCATATCTTCGATCTGTTCCAACATCAGACGCTTCA	65	-	chr3L	21349261	21349326	21349261..21349326				0	no match
CG14266-RA	GAAGGTCAGGAAAATCACAAGGAGAAGGGGTCTCAGGAGCCGCAATGGTCGCAGCAGTAGAAACC	65	-	chrX	3134245	3134310	3134245..3134310	CG14266-RA,	FBgn0010294,	ng2,	1	.
CG12133-RA	GCCAAGGCACCATCAGTGGAATGAGTCCGGATGAATGCTTGAATCGGTATCCAACACTGCTCGTCGATA	69	+	chr2R	5855512	5855581	5855512..5855581	CG12133-RA,	FBgn0033469,	CG12133,	1	.
CG13135-RA	GTGTGCCGATGATCCCACCGATACGGCTTGCATCGATTGCACAGATACCGCGAATGCAGCTGAAG	65	-	chr2L	10122594	10122659	10122594..10122659	CG13135-RA,	FBgn0032184,	CG13135,	1	.
CR31850-RA	TTATGGCTAAGATCAAAGTGTAGTATCTGTTCTTATCAGCTTAACATCTGATAGTTCCTCCATTGGAG	68	.	.	.	.	.	CR31850-RA,CR33788-RA,CR31854-RA,CR32913-RA,CR32882-RA,	FBgn0004191,FBgn0041720,FBgn0004192,FBgn0003920,FBgn0003922,	snRNA:U2:34ABa,snRNA:U2:34ABc,snRNA:U2:34ABb,snRNA:U2:14B,snRNA:U2:38ABa,	5	.
CG14291-RA	CAACCAGATTGGCAGAAACATCACCCGGATGAAGGAGTATGCCAGGCAGTTTCTCAAGCAGGCCA	65	-	chr3R	14738054	14738119	14738054..14738119	CG14291-RA,	FBgn0038660,	CG14291,	1	.
CG8557-RA	GGAAACTGTCGAAGGAGCAGGACTTGTGGATGGAGTGCGACATGGTAATGCAAATGGTTATTTGGCCCA	69	-	chrX	17350954	17351023	17350954..17351023	CG8557-RA,CG8557-RB,	FBgn0030842,	CG8557,	1	.
CG4538-RB	GCTGCTGGATCCCATGTTCATAGTGCCTGGTTCAGACATTCGGGGTGTTCACATAACCGCCGACTATGT	69	-	chr3R	15725453	15725522	15725453..15725522	CG4538-RA,CG4538-RB,	FBgn0038745,	CG4538,	1	.
CG5837-RA	CTGGACAAGCGCATACCCTTCCTGCTTAGCTCAGTGAAGGACTTTCAGGAACATTTGCCCGGAGG	65	-	chr3L	22278176	22278241	22278176..22278241	CG5837-RA,	FBgn0011771,	Hem,	1	.
CG6642-RA	AGGCCAATGAGGAGCCATAATCAATCTCTATTTTACGTCGTTTTTAACTTAAGTGATTTTATGTTGCTT	69	-	chr3L	17016252	17016321	17016252..17016321	CG6642-RA,	FBgn0011293,	a10,	1	.
CG40057-RA	GGGCCGACTGAAAGAGTCCCAGAGATACAACATAGAACCATCGTGCCAGAAAGCCCGATTAACGTACGC	69	-	chr3L	24519317	24519386	24519317..24519386				0	no match
CG30362-RA	GCAGCCACCCGAGTAACTTGCTTCAAATGACAACATTTGTGGAACGATCACATTCCGTTACAACGCTCA	69	-	chr2R	4254017	4254086	4254017..4254086	CG30362-RA,	FBgn0050362,	boly,	1	.
CG7299-RA	ATTCGGTGGTAACTCCGAAGCTAACGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTG	65	-	chr2L	10683939	10684004	10683939..10684004	CG7299-RA,CG7299-RB,	FBgn0032282,	CG7299,	1	.
CG9441-RB	AGTGGGCACTAGAGGACGCTACTGAAATCCGAGACCAACTAAACCCCTACAATATTTTTGGAGGCGCTT	69	+	chr2R	17069470	17069539	17069470..17069539	CG9441-RB,CG9441-RC,CG9441-RA,CG9441-RD,	FBgn0003162,	Pu,	1	.
CG8989-RC	AATCTATCATTCATATTTACATGTATACATTTATCATCCTTTTGTTGTTCAATCGAATCGTCAGCATGA	69	-	chrX	9047956	9048025	9047956..9048025	CG8989-RA,CG8989-RC,CG8989-RB,	FBgn0004828,	His3.3B,	1	.
CG3927-RA	GGAAACCCCAAGCGAGTTAACTGAGAAACAGAACCAAGACCAACCTACCTACCAGCCGCGACTGAACGA	69	+	chr2R	18482258	18482327	18482258..18482327	CG3927-RA,	FBgn0034739,	CG3927,	1	.
CG5068-RA	GACCCCACAGCGAAGACAATCGGATCAATGTCGAGTTTACAGCGCACGATGTTGAAGGGCAAGCTG	66	+	chr3L	8979957	8980023	8979957..8980023	CG5068-RA,	FBgn0035951,	CG5068,	1	.
CG6761-RA	GGAGCTCAAGTCTTGGCGCAAGGTGTACTGGAAGTTATGGGGTCACTGCCATTACCTGTACTGCTGC	67	-	chr3L	9694949	9695016	9694949..9695016	CG6761-RA,	FBgn0036031,	CG6761,	1	.
CG5819-RA	ATGCCGAAACTAGTCAGGCCAGTGAAGTCAATGATGGATCTCTCGGGACCAGAAAGAGCCCGCAA	65	+	chr2R	18183457	18183522	18183457..18183522	CG5819-RA,CG5819-RB,	FBgn0034717,	CG5819,	1	.
CG8208-RA	CGGCGTACACGGCCAGAGTTCTACGAAGGCTGATTTGACCAAGAATGCCATGGCGTTTATGAATCCTGA	69	+	chr3R	5386959	5387028	5386959..5387028	CG8208-RB,CG8208-RA,	FBgn0027950,	MBD-like,	1	.
CG4747-RA	GGCCGCTACATCGGTCAAGTCGACAAAGGGATCGGCAAAATCAGCACAGAAACGGCGTACCTCTG	65	+	chr2L	10005975	10006040	10005975..10006040	CG4747-RA,CG4747-RB,	FBgn0043456,	CG4747,	1	.
CG13044-RA	CCGCCCCGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTGGCCTACTCG	65	-	chr3L	16295755	16295820	16295755..16295820	CG13044-RA,	FBgn0036599,	CG13044,	1	.
CG14177-RA	ACGACCCAAGCCAGGTATCCTGCGACTGGACATCGGCAAACCGCGACGCTCATCAGGTGGTTCCG	65	+	chr3L	9591045	9591110	9591045..9591110	CG14177-RA,	FBgn0036013,	CG14177,	1	.
CG13794-RA	ACAAACAAGTATTGACTCATTGGGCTCTGTATTTGTCCAGTGCTACCGCATTGTCTTCTCTGGGTTGGC	69	-	chr2L	7720884	7720953	7720884..7720953	CG13794-RA,	FBgn0031936,	CG13794,	1	.
CR40454-RA	TGTGCGTCATCGTGTGAACTGCAGGACACATGAACATCGACATTTTGAACGCATATCGCAGTCCATGCT	69	.	.	.	.	.	CR40454-RA,CR40685-RA,CR40677-RA,CR41620-RA,CR40743-RA,CR41619-RA,CR40679-RA,CR41583-RA	FBgn0250731,FBgn0085767,FBgn0085765,FBgn0085826,FBgn0085772,FBgn0085825,FBgn0085766,FBgn0085805	5.8SrRNA:CR40454,CR40685,CR40677,CR41620,CR40743,CR41619,CR40679,CR41583	8	.
CG4501-RA	GGAGAGCTGTGCATCCGAGGACGTCACGTTTTCATGGGCTACATCGACAACAAGGAGAAGACCGAG	66	+	chr2L	14018329	14018395	14018329..14018395	CG4501-RA,	FBgn0027348,	bgm,	1	.
CG10041-RA	TGCCTTCACTCGCATCAACGCATACTCCAGCTGGATTCAGGAATCCATGGACTCTATGGCTGCGAGATT	69	-	chr3R	8176654	8176723	8176654..8176723	CG10041-RA,	FBgn0038014,	CG10041,	1	.
CG9354-RA	GCAGCCCAAACTGCACCCACCCTAGTGTAACTCCAAACTAATAATGATTTTCACCGCTTTTGCACATGT	69	-	chr3R	5226770	5226839	5226770..5226839	CG9354-RA,	FBgn0037686,	RpL34b,	1	.
CG8427-RA	ACAGACAGCAACACACCAAGCTAGCGAACATGTCTATCGGAGTGCCCATTAAAGTTCTGCACGAGGCC	68	+	chr2R	8056352	8056420	8056352..8056420	CG8427-RA,	FBgn0023167,	SmD3,	1	.
CG5198-RA	GGCGAGCAAAAGAAAGCACCAAGCATCCCAGAAAGTGAAAGAGGAATCCTTCAAGAAACACACGCTTGA	69	+	chr2L	10436087	10436156	10436087..10436156	CG5198-RA,	FBgn0032250,	CG5198,	1	.
CG5074-RA	GGCATCCGCAGTCGAGCCACGGAACTTACATAATGTGCTTGATTCGTACCTAGAGTGTTGAGCACCGGA	69	-	chr2L	1155992	1156061	1155992..1156061	CG33979-RB,	FBgn0261458,	capt,	1	.
CG18088-RA	GGTGCACCTGCGAACCCTACAAGATTATCTCGGGACAAGATTGGACGACTCCTATTGCCCACAGTGTGA	69	+	chr2L	8969619	8969688	8969619..8969688	CG18088-RA,	FBgn0032082,	CG18088,	1	.
CG30429-RA	GGCAGGGAGTCGGATCAATGCTACGCAAACGCGGAACTGAGGTACAGCTGATATATTCGGGAAGATGGT	69	+	chr2R	21134283	21134352	21134283..21134352	CG30429-RA,	FBgn0050429,	CG30429,	1	.
CG13290-RA	GATCATGCAGGATATACGCCTACGCCTGGAACCACAGCACAGTAAAGCCACATTCATATCCTCCT	65	-	chr3L	5931001	5931066	5931001..5931066	CG33993-RA,	FBgn0053993,	CG33993,	1	.
CG31919-RB	GCAAAGGAGCCAACACTTAAGCTGGTCAAGGATAAAAAGGACAAAATTGCATTTGAGTACATCATGGAG	69	+	chr2L	5047670	5047739	5047670..5047739	CG31919-RB,CG31919-RD,CG31919-RC,CG31919-RE,CG31919-RF,CG31919-RG,CG33995-RA,CG33995-RB,CG33995-RC,	FBgn0031674,FBgn0053995,	CG31919,CG33995,	2	.
CG5213-RA	GCGTCGCGAGAGGACGAACGATCATCATGTGTCTAAGCGTTCTCGAGATTCGGACTAATCATTATGCGT	69	+	chr3R	11321221	11321290	11321221..11321290	CG5213-RA,	FBgn0038345,	CG5213,	1	.
CG6349-RA	GGCCTGGATATAGTACGTCGCGATTGGTCTCAGCTGGCTGTAATGGTGGGAAAAGCCGTTCTCGATG	67	-	chr3R	17493869	17493936	17493869..17493936	CG6349-RA,	FBgn0259113,	DNApol-alpha180,	1	.
CG13905-RA	AGAGCCATTAACTCCCTACCCGCCTATCGATTCTACCGCCAGTTGATCAACCAACCCGAAGTGCG	65	+	chr3L	903128	903193	903128..903193	CG13905-RB,	FBgn0035176,	CG13905,	1	.
CG1927-RA	CGAAACGGGTGAGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTCGATGAGGA	69	-	chr3L	1967428	1967497	1967428..1967497	CG1927-RA,	FBgn0027547,	CG1927,	1	.
CG5684-RA	CAACTTCCACGACAGCAACGGTGAGACGAACAGCGCTTCATGATTCGTACTGATGGGGAACGTGG	65	-	chr3L	11991948	11992013	11991948..11992013	CG5684-RC,CG5684-RA,CG5684-RB,	FBgn0036239,	Pop2,	1	.
CG5643-RA	ATGCCGATCATGTTCCCGGCCCTATACCGCATCAGCAAGGAACACTGGAATCAAACTATCGTGGC	65	-	chr3R	23391729	23391794	23391729..23391794	CG5643-RB,CG5643-RD,CG5643-RA,CG5643-RC,CG5643-RE,	FBgn0027492,	wdb,	1	.
CG9324-RA	CGCTGTGGTGGAGAAATCTCTGGGAATTTACCAATAAGTCCCTGCAAATGAAGTTGCTAAATGCCTGGC	69	+	chr2L	20788501	20788570	20788501..20788570	CG9324-RA,	FBgn0032884,	Pomp,	1	.
CG31928-RA	TGGTCTGGGATTCTCCGAAATCGCCCTGAATGGAGTGGAGACCCCTCTGGACAATATTTTGGAACAGGG	69	+	chr2L	1492915	1492984	1492915..1492984	CG31928-RA,	FBgn0051928,	CG31928,	1	.
CR31863-RA	CCAGCTACTGCCTCTCTCCGTTTTGGCCAAATTTGCATATTGAACGGCAGTTTGTCTTGAGCCTGAGCT	69	-	chr2L	11957134	11957203	11957134..11957203	CR43314-RA,CR43314-RC,CR43314-RD,	FBgn0263019,	CR43314,	1	.
CG32971-RA	AGAGGAGCTGTCCGAACTGGAGTACGAGTACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGA	69	+	chr2L	14277835	14277904	14277835..14277904	CG32971-RA,CG32971-RB,CG32971-RC,	FBgn0052971,	CG32971,	1	.
CG10629-RA	AGTCATGGAAATGAAGCACTTGAAGATCTACCGCACATTTGACGATGAAACTCTGGAGAAGATGCGGCA	69	.	.	.	.	.				0	no match
CG6630-RA	TGCCTTGGAGAGCTCTACAAACTCATCCTGCCCATGTACGAAAGAGATCGTAGTTACCAGGACCTGGCA	69	-	chr2L	7477286	7477355	7477286..7477355	CG42533-RF,	FBgn0260486,	CG42533,	1	.
CG6601-RA	ATTTCCGATACCCCCTAAACCCTCTAAACGAAAAAAAACCCAAGACCATGTACTTATGTCAGGCCAGGC	69	-	chr2L	12107726	12107795	12107726..12107795	CG6601-RA,	FBgn0015797,	Rab6,	1	.
CG12106-RA	TGCCAGGACAAACTGCAAAGGTAGTTGGCATTAGTTATGTATGTAGATATACTCGTTTAGATAATAGGT	69	+	chrX	9089242	9089311	9089242..9089311	CG12106-RA,	FBgn0030100,	CG12106,	1	.
CG13988-RA	CAGTGAAGCGACCTTCTCCAGCAACATCAGCATGTTCTCCCGCCAGTGCCTTTCCCACCTCACCC	65	+	chr2L	6190487	6190552	6190487..6190552	CG34380-RC,	FBgn0085409,	CG34380,	1	.
CG8147-RA	CTAAGCGACAAACGTATTATTCTCGTTTAAGAGAGAAGCCACTAGAAGATAAGCAATCGTTTAAGGGGG	69	+	chr3R	5322351	5322420	5322351..5322420	CG8147-RA,	FBgn0043791,	CG8147,	1	.
CG6760-RA	GTTGAAGGACTGCAGGGAGTTACCGTGATAGCAGCTACCTCCAGACCGGAACTGCTAGATCCCGC	65	+	chr3L	14068262	14068327	14068262..14068327	CG6760-RA,	FBgn0013563,	pex1,	1	.
CG30174-RA	TGCGTGCAATGCAACAAGACTCTAGACTCAACTCTTCACTGTGATGGTCCGGACAAGGACATTTACTGT	69	+	chr2R	19963892	19963961	19963892..19963961	CG42309-RB,	FBgn0259209,	Mlp60A,	1	.
CG12787-RA	TCTTCTTCGCAGCTCTGTTTATTCTCATGGAAGCCCTGACGGAACTGGGACTGATTGAGTGGATCGGCA	69	-	chr2L	4909751	4909820	4909751..4909820	CG12787-RB,CG12787-RF,CG12787-RD,CG12787-RE,CG12787-RA,CG12787-RC,	FBgn0041150,	hoe1,	1	.
CG12534-RA	CAACTACGGCTACGACTACATCAGCCCCACGCACATCGAACTCAGCCGGGAAGCAACTCGCCTGG	65	+	chrX	19643043	19643108	19643043..19643108	CG12534-RA,	FBgn0031068,	Alr,	1	.
CG30464-RA	CGATCGGAGCTTTTCGGATATGGTGAGACTAAAACTGGCAACCATGAACGATTTTAGTCCACCACGGTT	69	+	chr2R	11395645	11395714	11395645..11395714	CG30464-RB,	FBgn0050464,	Ir52d,	1	.
CG13203-RA	CAAATCGGACAGCTATCCGCCCACCTTCCAACTGGCCTCCAAGGAGTACTCGCACATGATACGCC	65	+	chr2R	7263415	7263802	7263415..7263423,7263745..7263802				0	no match
CG11271-RE	TGGACGCGCGTTACCTCTACAAAGTGTTTCTGAAAATCCAGGCATCCAGTGAAATCAGCGTGTGATATT	69	+	chr3L	13022096	13022165	13022096..13022165	CG17672-RA,	FBgn0083978,	CG17672,	1	.
CG6727-RA	GAAGGGAAGTGAAGAGCAAGTACCATGTCCCGATTTTTGATAGCTACCAAAGAGCGTCTCCAGAGGGGA	69	+	chr2R	18027628	18027697	18027628..18027697	CG6727-RA,	FBgn0029084,	gom,	1	.
CG12385-RA	GCATACTTTCGGGGATTATATAGCGATTCGAAATCAAAAAGCTTCCCATCTGCCCATCTAATTGTTAAT	69	-	chr2R	7229348	7229417	7229348..7229417	CG12385-RA,	FBgn0011555,	thetaTry,	1	.
CG12936-RA	AGATGAAGCCTGGAAATCGGAAAACCAAGTGGTCCAGTGGCTATCCGAAAGCAGCTTCCAACGGG	65	+	chr2R	6698892	6698957	6698892..6698957	CG12936-RA,	FBgn0033549,	mms4,	1	.
CG32782-RC	AGCATCAACAAACAAAGCAAAAAACGCAAAAAAGGATTACAAAGACGCAGAGAATAGGGGACATTTGCA	69	+	chrX	3680984	3681053	3680984..3681053	CG34412-RE,CG34412-RF,CG34412-RG,CG34412-RH,CG34412-RC,	FBgn0086899,	tlk,	1	.
CG8595-RA	GCACTGGAAGATAGCAGCTCGAATTCGGGATCCCTTGAGAAGAGAGAGCTGGACTTTAACGCCACAGGT	69	+	chr2R	15717418	15717487	15717418..15717487	CG8595-RA,	FBgn0034476,	Toll-7,	1	.
CG9531-RA	GCGAGATTGCGCCATAGACAGGACGGAATGCTATGACTTTGACAATGCAATTAGCTATAACGTTGCCCA	69	-	chr2L	6466454	6466523	6466454..6466523	CG9531-RA,	FBgn0031817,	CG9531,	1	.
CG9770-RA	GGACGCCACTTCTTCTACAACTGGAACTGTTTCCTCAACATCGCTCTGGATCACATGTCCGCCGGG	66	-	chr3R	4486900	4486966	4486900..4486966	CG9770-RA,	FBgn0086679,	p,	1	.
CG7841-RA	GGGGACGTCGCCTCTTCCAGAACATAACCAAAAGCCTGTAGGACCGATCGCATGGGATCGAATGAG	66	-	chr3L	15498963	15499029	15498963..15499029	CG7841-RA,	FBgn0036502,	CG7841,	1	.
CG31174-RA	ATTCGATGAAGATTTTGTGATGCATATGGAACCTGAGATCAAGGTGGAATGCTCTGTTGATGATCCCAA	69	-	chr3R	17694961	17695030	17694961..17695030	CG31174-RA,	FBgn0051174,	CG31174,	1	.
CG33003-RA	CCGCAAGCTCTGGTACATCCCGCTCTACTTTACGGTGTGGTTCAGCTTCTACATCCTGTGGCTGATCAT	69	+	chr2L	4402859	4402928	4402859..4402928	CG33003-RA,CG33003-RB,	FBgn0053003,	CG33003,	1	.
CG17697-RB	CCACGCTTCTTCGTCGCAGTCACTTTGAAAATTACGCAAATTGAAAGTTACATCGTTATGTGGCCGGCA	69	+	chr3L	14326358	14326427	14326358..14326427	CG17697-RB,	FBgn0001085,	fz,	1	.
CG9283-RA	TGGAGCCACCACGAGGAACCCAAACACCATCCCAAATACGAATTCAATTACGGGGTGAAGGACACC	66	-	chr3L	19511048	19511114	19511048..19511114	CG9283-RA,	FBgn0036878,	Cpr76Ba,	1	.
CG17083-RA	GCAACATCAGGCCTATGTAATGCGAGCACGGAAAAGGATGACCATTTTGGAGAATTCCCTGGAGGTGGG	69	-	chr3R	19113147	19113216	19113147..19113216	CG17083-RA,	FBgn0039070,	CG17083,	1	.
CG11092-RA	CCCTTCTGAGCTCCGACCCTGACGACCCAAAACCAATGAAACGACTCAATCTTGTGCGTCTGATCGTCA	69	+	chrX	13718681	13718750	13718681..13718750	CG11092-RA,	FBgn0027537,	CG11092,	1	.
CG31145-RB	GGCGACCGGAGTGAGCCCACACAACATCCTAGAGCATTAGATTAAATCCCCTAGCTGTTAGTCGCGTGT	69	-	chr3R	19432494	19432563	19432494..19432563	CG31145-RA,CG31145-RB,CG31145-RC,	FBgn0051145,	CG31145,	1	.
CG7973-RB	CGCTCTGGCTATTTGATGGTCCAGCAGTGTCCTTTCTTCTACGGATGGGACTACGAGAAGCGATCCTGT	69	-	chr3L	15519071	15519140	15519071..15519140	CG33985-RA,	FBgn0053985,	CG33985,	1	.
CG33137-RA	GCAACAAGTTTCAGCCGTTCCTCGTAGACGTCGTGATAAACATGTGCGATGCATTATCCAGGCGTAGCT	69	+	chr2R	9063206	9063275	9063206..9063275	CG33137-RA,	FBgn0053137,	CG33137,	1	.
CG10189-RA	CCAGAGCAGTCCTCTTGTGTTCACTGTCGATCTACACTGGACTCCGAACTATCCGACACTCTGCTGGCT	69	-	chr2L	19491834	19491903	19491834..19491903	CG10189-RA,	FBgn0032793,	CG10189,	1	.
CG1677-RA	TATAAGAGACCAGCTGTGGACAAGCGTGGCGTTGGACACAGTCCGTCTTCCAAGCGTAAGAAGCT	65	-	chrX	7176124	7176189	7176124..7176189	CG1677-RA,CG1677-RB,	FBgn0029941,	CG1677,	1	.
CG7670-RA	ACGTGATTTCCCCGAGGTTACAGCCGAACCACTGATAGAGAAATGCGTGGACTTGGGTCTTTGGTGCAA	69	-	chr3R	14190700	14190769	14190700..14190769	CG7670-RA,CG7670-RB,	FBgn0038608,	WRNexo,	1	.
CG7101-RA	CCTGAGCGACATCTCACGTCCAGAACTACGATTAATATATACTTAAGCAATGGATAAATGTAACGTTTT	69	+	chrX	18725862	18725931	18725862..18725931	CG7101-RA,	FBgn0030963,	CG7101,	1	.
CG17623-RA	CGCCGCTCCAAGCTGACCAGAATCATAAACGGTGAGTGCGGGGTAAATCGGATGCGGAATCCAAAAATT	69	+	chr3R	18490962	18491031	18490962..18491031	CG42686-RB,	FBgn0261572,	CG42686,	1	.
CG7092-RA	GCGCACCATTCTGACCATCTTTTCCTCGAAGCGAATCATCCAGCCCGACTACAAGTACTGTCGTGGTGA	69	+	chrX	17971105	17971174	17971105..17971174	CG7092-RA,	FBgn0013809,	Dhc16F,	1	.
CG6174-RA	TGGGCGAGGAATGTGAGGGCATTCACGACGTTCTGATGTACTCCATCGAGAAGTCAGATATGGATCTCA	69	+	chr3R	8519298	8519367	8519298..8519367	CG6174-RA,	FBgn0011745,	Arp87C,	1	.
CG10232-RA	TACCGATTTGTGTGCCGAAAGATCCCATCCCCTTGCATAATCACCCATTGCAAATCGCCGGTTGG	65	-	chr3R	19545515	19545580	19545515..19545580	CG10232-RB,	FBgn0039108,	CG10232,	1	.
CG16964-RA	GCGTATCCAATATGAAGCTACCCTACTTTATAAGCCCAAGGTGTGTTCAAAATCAGGATCAACTGGTTG	69	+	chr2L	11948245	11948314	11948245..11948314	CG16964-RA,	FBgn0032385,	CG16964,	1	.
CG1675-RA	AGGGGTCGTCGAAGCAGAAGGATGATAGCAGTATAGCCGCAAGTTCAGATGCCAAGACAGCGTCC	65	+	chr2R	5753278	5753343	5753278..5753343	CG1675-RA,	FBgn0033457,	CG1675,	1	.
CG31209-RA	CTACTAGACTGCACCTAATCTCTGTTTAGTCATAGGCTAACCATTTTTTCCCCTCTCCTGCGAAACGGA	69	+	chr3R	16070222	16070291	16070222..16070291	CG34139-RB,CG34139-RC,CG34139-RD,	FBgn0083975,	CG34139,	1	.
CG9135-RB	GTCGCCCAAAAAGGTCGTTTTGTACATAGAGAAGAGCAAGGAGGGTCATGTAACGCCAGTCGATGG	66	+	chr2L	6052555	6052621	6052555..6052621	CG9135-RA,CG9135-RB,	FBgn0031769,	CG9135,	1	.
CG32527-RA	AGGTTTTACATGTTTTTCGGGCTATGTTGCACACATATCCAAAATATTCAGTTCATATCCGCACAACTG	69	+	chrX	21243566	21243635	21243566..21243635	CG1410-RA,CG1414-RB,CG1414-RC,	FBgn0024182,FBgn0024251,	waw,bbx,	2	.
CG32560-RA	AATCCCAACTCGAATATGCCCAAGAACTTGGAGGATCTGGACGATCTGTTCAAGTACGCCGAGGA	65	+	chrX	17643543	17643608	17643543..17643608	CG42684-RA,CG42270-RB,CG42270-RC,CG42270-RD,CG42684-RE,	FBgn0261570,	CG42684,	1	.
CG9347-RA	TGCAAACGAATCCCAATTATGCTACCCTCTTTCGTGGACGTCCCTTGAGATTCGTCCTGCCCTTGGG	67	+	chr3R	9527916	9527983	9527916..9527983	CG9347-RA,	FBgn0002937,	ninaB,	1	.
CG10332-RA	AATCCGTTCAGGTCTCCAAGCTCACAGCAACGACCACTGTACTACGACGCTCCGATTGGGAAACC	65	-	chr2R	19488498	19488563	19488498..19488563	CG10332-RA,CG33706-RA,	FBgn0260455,FBgn0067903,	CG10332,IM18,	2	.
CG7815-RA	TTTACCGACGAGATGAGCCGTCAAGTGGAAAGCTTATTCAATGAGGCCAAATCCAAACCTCTGCCCACT	69	-	chr3L	15477825	15477894	15477825..15477894	CG7815-RA,	FBgn0036497,	ran-like,	1	.
CG10240-RA	GGATCGGGGAATGTATCACAATGAGCGGGATGATCCTCTAACTGGGCATCTATTCCGCATTGACGGGC	68	+	chr2R	10759609	10759677	10759609..10759677	CG10240-RA,	FBgn0013773,	Cyp6a22,	1	.
CG5922-RA	GGCTAGACCCTGTAGCGACAGTCAGCTACAGTTGGTTAATTGGTACGACGGCGATAACCTTGGTCTGCA	69	-	chr2L	22213609	22213678	22213609..22213678	CG42352-RD,	FBgn0259683,	Ir40a,	1	.
CG8338-RA	CCAGTGGCATTGGTCGTTTCTACGCCAAGTCGGCAAAAATCATACGTTTCGTACGCCTGGGATGCAC	67	-	chr2R	10060907	10060974	10060907..10060974	CG8338-RA,	FBgn0033907,	mRpS16,	1	.
CG14643-RA	AGCTCAATATGACCAGCTTGGCGGAACATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACAT	65	-	chr3R	74676	74741	74676..74741	CG14643-RA,	FBgn0037225,	TwdlG,	1	.
CG17684-RA	TGGCCTAGCAGATACCACAGCTCCCTTCGTCCATGGAGTGCAATTAGCAAAATCTTTGACAAGCGCCAA	69	-	chr2RHet	609451	609520	609451..609520	CG17684-RC,	FBgn0040017,	CG17684,	1	.
CG7941-RA	ACCATTCAGAGTCGTCTCTCAGTTTAGACAAACGCACTCCAAGCCAGCAAAGATGTTCCGCTACCTGCT	69	+	chr3L	10883096	10883310	10883096..10883160,10883305..10883310	CG7941-RA,	FBgn0036108,	Cpr67Fa1,	1	.
CG8232-RA	GCACACAAGCCAACCGAATGCTGTCAACAATTCTCCCAATGGACGCCAAAAGTCCTGGTTTCCCCTTAC	69	+	chr2R	4818847	4818916	4818847..4818916	CG8232-RA,	FBgn0033352,	CG8232,	1	.
CG10274-RA	AGGAGAACACAGAATACCTATGTGAATTCGACTTAAGTTTAATGATTCTGGTCTGAATGGAGAGGTTGC	69	-	chr3L	6171892	6171961	6171892..6171961	CG10274-RA,CG10274-RB,	FBgn0035690,	CG10274,	1	.
CG11099-RA	CGGCAGCTCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACACCGCTATCAACTACATACCCA	69	+	chr2R	16124814	16124883	16124814..16124883	CG11099-RA,	FBgn0034485,	CG11099,	1	.
CG31752-RA	TCAGCGCATGTATCTGAACACTCTGAAAGACGAAATGTCCCTCATGGAGTATCTAGTTACGGTCCCGGA	69	-	chr2L	18839995	18840064	18839995..18840064	CG31752-RA,	FBgn0051752,	CG31752,	1	.
CG4972-RA	GGCCATACAATACTTCCCCCGGTTTTACGATGAAGTTTCCAAGCTAACGAAGGAGGATCCCGCGGGTCA	69	+	chr2L	10317182	10317251	10317182..10317251	CG4972-RA,	FBgn0032217,	CG4972,	1	.
CG4569-RA	CCTCTCCGGCGTAGACGCGTACGCTCCTTTCAGGCCAACCAAGTTAAAAAGTTTTAAGTGAAAATGCGA	69	-	chr2R	20388431	20388500	20388431..20388500	CG4569-RA,	FBgn0017556,	Pros28.1B,	1	.
CG12171-RA	ATACTTTTCAAGGATGTGATTCTATGTAAATGTAATAGTTTGCTAGAAATAAATAAAATGAAAACCGCC	69	+	chr3R	1460270	1460339	1460270..1460339	CG12171-RA,	FBgn0037354,	CG12171,	1	.
CG2790-RA	GGCGGAAGGCAGTGACGAACCAGATGAGCCAATAGAAAAGAAGGCAATCAAGAGCGAGTCAGAGGATGA	69	-	chr2R	20834508	20834577	20834508..20834577	CG2790-RA,	FBgn0027599,	CG2790,	1	.
CG16958-RA	CTACATTTACATGCGGGAAAATATTCCACACATCAACATCGAATGTAGACACACTCGTACGTCTT	65	.	.	.	.	.				0	no match
CG10475-RA	AGATTGGCGAAAACTCCGTGTGCGAGAACTACTACGGCAGCTTCTCCGGCGACCTAATCTGCATC	65	-	chr3L	6046919	6046984	6046919..6046984	CG10475-RA,	FBgn0035667,	Jon65Ai,	1	.
CG18598-RA	GGGCCAAGTTCTTGATTCTCTGCCTGATCGAGACCAAGTTGTGCCAATTCATGGTCAGCATCCGC	65	+	chr3R	14077084	14077149	14077084..14077149	CG18598-RA,	FBgn0038589,	CG18598,	1	.
CG13340-RA	ATCAGTGCAGTGATCAGTGGCCGATTCACATTCGACCAAGTGTTATATTTCGTTTGATATTTTCAAGTA	69	-	chr2R	9665750	9665819	9665750..9665819	CG13340-RA,	FBgn0033868,	S-Lap7,	1	.
CG13335-RA	CGGCAAGTTCGTGTATCCGGATGGAGCTGTCAATAATGTGTCCAAGATACGTCGCCAGAACCAGAACGT	69	-	chr2R	9461565	9461634	9461565..9461634	CG13335-RA,	FBgn0261990,	CG42808,	1	.
CG1886-RA	TCCAGCACATCACTGATTTCGCGCATTTTCATGCACGACTACGGGAACATCACTTCGCCGGATGC	65	+	chrX	11757551	11757616	11757551..11757616	CG1886-RB,	FBgn0030343,	ATP7,	1	.
CG32985-RA	TGGTGGAGTGCAGGACAGCTGACGAAATGAGAGTCCTTCAAAGAGATGCCTTCGTGTTTGTGCAATACA	69	+	chr2L	8963064	8963133	8963064..8963133	CG32985-RA,	FBgn0052985,	CG32985,	1	.
CG15109-RB	AGGCGATACTGCAAGTGATTATAATGAAACCACTACAATGGACAATACTGCTTCACTGAGCGGAAAAGC	69	+	chr2R	14947297	14947366	14947297..14947366	CG15109-RC,CG15109-RD,CG15109-RE,	FBgn0034416,	CG15109,	1	.
CG4336-RA	TGAAATCTGCCTGGCTGTCTACGATCGGGGTCTGACAAGCCTCAAACGATCCACTCTGATTCCGC	65	-	chrX	5930408	5930473	5930408..5930473	CG4336-RA,CG4336-RB,	FBgn0003302,	rux,	1	.
CG14054-RA	CCCGAGCTTTCGACATCAGTCAGGAACTGTTCGTAACCAGGATGAGGATTAACGACGTGGAGAACGCCT	69	-	chrX	1959806	1959875	1959806..1959875	CG14054-RA,	FBgn0029596,	CG14054,	1	.
CG13299-RA	GGTTCAAGAAACCCATCCTCAGGTTCGATCGTCTTTTTGCCACCGAAGAATCACCGTCGGGAAGTCGGA	69	-	chr3L	6225162	6225231	6225162..6225231	CG13299-RA,	FBgn0035694,	CG13299,	1	.
CG6752-RA	CCTGCGAGTGAAACAGACTCTGCTTTCCGACATTACACTGCCATCAGAGGACTCCCTGTGTCCGATCTG	69	-	chr3R	11017223	11017292	11017223..11017292	CG6752-RA,CG6752-RB,	FBgn0038296,	CG6752,	1	.
CG12343-RA	CGCCTTCTACGGTGGAGCACACACCACTTTGCATTCGAGGACGAAGGACACTCCAGGTGCTATTAACAA	69	-	chr2R	6710277	6710346	6710277..6710346	CG12343-RA,	FBgn0033556,	CG12343,	1	.
CG4557-RA	CGAAGATCTTCAGTCCAGACTAGCTGCCCTGCAAGCCAGTTTCGACGGCCTAAAGGGAGATCTGC	65	+	chrX	6740215	6740280	6740215..6740280	CG4557-RA,	FBgn0029912,	CG4557,	1	.
CG31253-RA	AGCCAAGGAATACATCAAGAACCACAAGCCTTACAAAGCCAAAATCTACACACCCTACAAGCCGCGCAT	69	.	.	.	.	.	CG31131-RB,CG31253-RA,	FBgn0051131,FBgn0051253,	CG31131,CG31253,	2	.
CG12746-RA	ATCGGGAAGCAGTCAAGTTGAAACCACGTCGGGATTAACGCCACCAGACTAACAACGAGTGGATGCC	67	+	chr3R	1390943	1391010	1390943..1391010	CG12746-RE,	FBgn0037341,	CG12746,	1	.
CG17196-RA	TGGTGCCGCGAATATGCCAATCTCTATCCTAAGAAGGCCGTGAGCATAGGACATCCTTTGTCAGTGATT	69	-	chr3R	21601841	21601910	21601841..21601910	CG17196-RA,CG17196-RB,	FBgn0039368,	CG17196,	1	.
CG10080-RA	TAACTGCACCTTCTCCCCGATGCATGTAATCTACGGTGCTAGCTTGGGGGCTGATAGGGACCATG	65	+	chr2R	17517269	17517334	17517269..17517334	CG10080-RA,CG10080-RB,	FBgn0034641,	mahj,	1	.
CG12821-RA	ACACAGATCAGGTATTTACATATTTTACAAAATCTCACTAGATGTGAAAATAAATCCACTTATCGTAGA	69	+	chr2R	3721749	3721818	3721749..3721818				0	no match
CG13310-RA	CCAATCACCCGGATGTCTACGATGGCACTGGTAGTTGTCAGGTAACCGTTCAAAAACTGCATCCGGACA	69	-	chr3L	8793011	8793080	8793011..8793080	CG13310-RA,	FBgn0035928,	CG13310,	1	.
CG9075-RB_01196-01434	GAGGTCATCATGAAACAATTCCGTTCGGGCTCGTCTCGTGTTCTGATTACCACTGATTTACTGGCGCGC	69	+	chr2L	5984799	5984868	5984799..5984868	CG9075-RA,CG9075-RC,CG9075-RB,CG9075-RD,CG9075-RE,	FBgn0001942,	eIF-4a,	1	.
CG8319-RA	AGCAATTCACACGTATGCCAAAACTGCGAAGAGCGTTTTCTGTTCAAGGCCGATCTGGATAACCACCAA	69	+	chr3R	5453699	5453768	5453699..5453768	CG8319-RA,	FBgn0037722,	CG8319,	1	.
CG2171-RA	GCCGCCTGGAGTACTCAATGATCTGAACAGGAACGGTATCCAGTGCATTGCATCAGTAACGCTTCTCCA	69	-	chr3R	25960184	25960253	25960184..25960253	CG2171-RA,	FBgn0086355,	Tpi,	1	.
CG3704-RA	GTGTGTGTTCGTCACTTGCACCTCCGATATTTGGTTTGTATATATGGACTTAGTTTAGCTTTGCAAATT	69	-	chrX	833334	833403	833334..833403	CG3704-RA,CG32815-RC	FBgn0040346,FBgn0052815	CG3704,CG32815	2	.
CG11396-RA	ACCGGCAACACAATGATCCTGAACAACATGGGAGTGTGCCTTCTCTACGCCGGAAAGCTAAAGGATGC	68	-	chr3L	20779755	20779823	20779755..20779823	CG11396-RA,	FBgn0037022,	CG11396,	1	.
CG10987-RA	ATGTGAGCATTGACCCGATCTTGATGGCGTCTTGATGATGTCTTGACCTGATCACGATGGCGATACGAT	69	-	chrX	20930182	20930251	20930182..20930251				0	no match
CG13596-RA	ACTGGAATTCCTGTTGCAAAACCTCTCATCCTCCCGACCAGAGTATGAATATTTCATGTCGCCCTCC	67	-	chr2R	20605093	20605160	20605093..20605160				0	no match
CG14850-RA	GCCGCTAATACCACTACGAAACCCGCAGATGGAACAGATACCACGACACCCACCACAGGAGGAAG	65	+	chr3R	10386856	10386921	10386856..10386921	CG14850-RA,	FBgn0038239,	CG14850,	1	.
CG10529-RA	TTGCTGTCCAGGGATCCTTCCGCTTCGTTGCCGATGATGGCCAGACCTACGAAGTCAACTACATC	65	-	chr3L	6130872	6130937	6130872..6130937	CG10529-RA,	FBgn0020640,	Lcp65Ae,	1	.
CG6833-RA	ACATTTGTTATTCGAGATTGTCTTAAGCTGGATATTTATTTGGAATATATAGATGCCCCGACGCCATGT	69	+	chr3L	14044370	14044439	14044370..14044439	CG6833-RA,	FBgn0036405,	CG6833,	1	.
CG10221-RA	AGACTCCATCAAGGCATTATCCTATTTCACTCAGGCGGCTGATCAAGGTTGGGTTGATGGGCAACTGCA	69	-	chr3R	19581898	19581967	19581898..19581967	CG10221-RA,	FBgn0028475,	Hrd3,	1	.
CG9894-RA	TCCGGAAAACCTCAAAGAAACCAATTCAAATATGTCGGCTGCTACGGAACAACAGAACAACGGCGAT	67	+	chr2L	2753383	2753450	2753383..2753450	CG9894-RB,CG9894-RA,CG9894-RC,	FBgn0031453,	CG9894,	1	.
CG2158-RA	GCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGGACCAAATGGGCAAAAGTCCCTACTGCA	69	+	chr2R	4011290	4011359	4011290..4011359	CG2158-RA,	FBgn0033264,	Nup50,	1	.
CG15715-RA	ATAATTTCGGGTAGCAAATCACTACTTACTTTACAACGAGTTTTGCTCAAATTCGAAGCTGCATCACCT	69	-	chr3L	15830396	15830465	15830396..15830465	CG15715-RA,	FBgn0036538,	CG15715,	1	.
CG17158-RA	GGCAGTAAATTTGTTACATGAGAAAATTGTTACACCACGAGAAGCACATTAATGTAAATTTTGCCCGCC	69	+	chr2L	1706504	1706573	1706504..1706573	CG17158-RA,	FBgn0011570,	cpb,	1	.
CG15590-RA	CGGTGCCACGCTATATTGTCGCGGTGAACGAGCTCTGCGAAATGTCTTGCGGAATTTAAATCGCAGTGA	69	+	chr3R	2053501	2053570	2053501..2053570	CG15590-RA,CG15590-RB,	FBgn0037413,	Osi5,	1	.
CG8266-RB	GTTTTGGACCCATCTGTAGCAGCTCCAACCAGTTCCTACGGAATGCCATACAATCCAGTGCCGGC	65	+	chr2R	4784775	4784840	4784775..4784840	CG8266-RA,CG8266-RB,	FBgn0033339,	sec31,	1	.
CG31718-RA	GGGCGGATTGCTTAGTTCTTCAGATCAGGGTCCCTCTACAGTCGACGAAATAACTGCAAGCCCCTTGAA	69	+	chr2L	10407190	10407259	10407190..10407259	CG31718-RA,	FBgn0051718,	Ir31a,	1	.
CG12963-RB	AGCAGTGTTTCCAATTTTAATTAATTAACGAATAACAAGGTTGTTGTGTGGGTTAATCAAACTGCACAT	69	+	chr2R	11449069	11449138	11449069..11449138				0	no match
CG7979-RA	TGGGGACATGTAAACCCTATTGGACCGAGAGCCTGTTATGACGAGGGAAAGCGTGTCTCCGAGACG	66	+	chr3L	8174942	8175008	8174942..8175008	CG7979-RA,	FBgn0035848,	CG7979,	1	.
CG3856-RA	GCGCAAATAAAAACCATTACCCAGTGCTAAACTAGTAAAGAAGTGTTAATGTTGTACTCTTGGCCCGAG	69	-	chr3R	16514921	16514990	16514921..16514990	CG3856-RA,CG3856-RC,	FBgn0024944,	Oamb,	1	.
CG5001-RA	AAACCGATCCCATTCATTTTGTAACAACCCATCGAGATCTTGCTCCCATTTTGCTTGTTTTTGTGTTCA	69	+	chr2L	1196543	1196612	1196543..1196612	CG5001-RB,CG5001-RC,CG5001-RA,	FBgn0031322,	CG5001,	1	.
CG17127-RA	TGGGCGCGTACGAGCAGATACCCGGCAACCAGCGCATCAATCTCTTCGAGATCCTCGGCGACCAG	65	+	chr2L	10771156	10771221	10771156..10771221	CG17127-RA,CG17127-RB,	FBgn0032299,	CG17127,	1	.
CG2218-RA	GCCAGTCAATCGCTTTAGCCCCTAGGCCTCGTCTACGTTAGTTTATAGTCATATCAGAGTCGGTCTGGT	69	-	chr3R	26251626	26251695	26251626..26251695	CG2218-RA,	FBgn0039767,	CG2218,	1	.
CG32282-RA	GGGAGGAAGGACGTGTCAGTGGACACTGCAGTGCCAGTCTGAAGTGCTGGTGCGAACAATGCTGA	65	+	chr3L	3315787	3315852	3315787..3315852	CG32282-RA,	FBgn0052282,	dro4,	1	.
CG7712-RA	TGTTCTGCTTGGAGCAATTTGGTCGTAGGAAAAACAGAAAGAAATAAAAACAAATCAAATGGCCGGACG	69	-	chr2R	6785287	6785356	6785287..6785356	CG7712-RA,	FBgn0033570,	CG7712,	1	.
CG6182-RA	AGCCCTTCATGTGGCTGATAGACCATAAGAAGAAAGCACAGGTCATGCACACCATGTGGCTGATAGAGT	69	+	chr3R	19987821	19987890	19987821..19987890	CG6182-RA,	FBgn0039158,	CG6182,	1	.
CG6890-RA	ATGAGAACAGAGCCGTACAGATTAGTTTGGTCTTGGCGATTAACATCTACCAGCTTGTGTGCTTCGCCC	69	+	chr3L	15235174	15235243	15235174..15235243	CG6890-RA,	FBgn0029114,	Tollo,	1	.
CG6800-RA	GGTGGCCCTTAAGAACAAGTTCGGAAACATAGCCCTAAATACTTTGAGGGAAATCAAGACCCTGCAGCT	69	+	chr3R	17601975	17602044	17601975..17602044	CG6800-RA,	FBgn0038902,	CG6800,	1	.
CG3250-RA	GCCGTCGAGAAGAACGAATAGCCGAGCCAAATTTAATGTGACTACCATTGAAGGAACTGGACCGGAATT	69	+	chr3R	3805189	3805258	3805189..3805258	CG3250-RC,	FBgn0010401,	Os-C,	1	.
CG13398-RA	CCCATGCAGACCCAAAGCCTGAATAGCATCTCTGCTGATACGGGAGATACGCAGGCGAAGAAGGTAACA	69	-	chr2L	8413733	8413802	8413733..8413802	CG13398-RA,	FBgn0032042,	CG13398,	1	.
CG2204-RA	CTCATCCTTTACGCAAATATCCTCACTTGTGCTCTTGCTCTATAGTTGGACGGAAATCCATTTATGTTT	69	+	chr2R	6351048	6351117	6351048..6351117	CG2204-RA,CG2204-RI,	FBgn0001122,	G-oalpha47A,	1	.
CG2852-RA	GAATAAACTGAAGCGCTGTGAATATTTAGAACGATGAAGCTGTTCTTATCCGTTTTCGTGGTAGCCCTG	69	-	chr2R	18533740	18533809	18533740..18533809	CG2852-RA,	FBgn0034753,	CG2852,	1	.
CG31184-RA	TTCAGTGGTGCAACTTATAAACAGCGTTTTGTGTTTCGCAAAATAATATACAATTTTCAGTCAGTAAGT	69	+	chr3R	19822142	19822211	19822142..19822211	CG31184-RA,CG31184-RB,	FBgn0051184,	LSm3,	1	.
CG18788-RA	CACTTCTGATGCCCTATCTGGAACAACTGGAGACCGACTACAAGCTGGTGAGCAGTGTGAGGGCC	65	+	chr2L	12035842	12035907	12035842..12035907	CG18788-RB,	FBgn0042126,	CG18788,	1	.
CG17574-RA	CCGCCGTATGACATGTCCATGGCTAATCCAGGACCTAGTGTTATGCCCGCTGGATATGAGAAGCAAGCT	69	-	chr2R	8737268	8737337	8737268..8737337	CG17574-RA,CG17574-RD,CG17574-RE,CG17574-RF,CG17574-RG,CG17574-RH,CG17574-RI,	FBgn0033777,	CG17574,	1	.
CG15532-RA	GGCCGTATACGAGCCAACTCTCCTGAAGCGAGTGTTTTAGTTTTTTAAAATCATTTGATTTTTTTTATA	69	+	chr3R	26187650	26187719	26187650..26187719	CG15532-RA,CG15532-RB,CG15532-RC,	FBgn0010113,	hdc,	1	.
CG13315-RA	ACACACACAACAATATCCCCAAGATGTCTGCCACTAAGGTGAACCATTTGATCGGAGCGACTACGCG	67	+	chr3L	9090087	9090154	9090087..9090154	CG13315-RA,	FBgn0040827,	CG13315,	1	.
CG8801-RA	GTAATGCTCATGTCCACCGTACAGGAAACCGGTGTCATGGAGGTGAAAACCGAGGCATGTGAGCG	65	-	chr2R	5284926	5284991	5284926..5284991	CG8801-RA,	FBgn0028473,	CG8801,	1	.
CG7987-RB	TCGCGACCTCGAATGATTCACACAGAGAAAGCCAAGGTGACAAAAGGAGTTGGCGGAGACTCCACTAGT	69	-	chr3R	10397360	10397429	10397360..10397429	CG7987-RA,CG7987-RB,	FBgn0038244,	CG7987,	1	.
CG12990-RA	CGACTCAATGCCGTACGCAACGTTTTCTTCATCCAGAATTTGTTTCCCATTCAGTTTATGTGCGGATCG	69	-	chrX	17564370	17564439	17564370..17564439	CG12990-RA,	FBgn0030859,	CG12990,	1	.
CG15517-RA	GCAGCTGCTGCCAGAGTGTTTCGGTTGATCTCCTTAGTCAAAATAGTACCGTCTGCCTCACTTTGGGCA	69	-	chr3R	25729257	25729387	25729257..25729275,25729336..25729387	CG15517-RA,	FBgn0039718,	CG15517,	1	.
CG8612-RA	CAAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAGTACGAGGGACACGAAGCCAAGC	65	-	chr3L	7236318	7236383	7236318..7236383	CG8612-RA,	FBgn0028648,	mRpL50,	1	.
CG7768-RB	TGTTACGCATTTCAGACCAATTCGTTGAATAATCCGGTGCACCCTGAACAGCCCAGTTCCCTGACTCAT	69	+	chr3L	14212119	14212188	14212119..14212188				0	no match
CG14541-RA	AACAAATGCGGCATCTAGCATAGGACAACCGGGTGATTTGGCCCCCACAGTTATATCCCCAACCG	65	+	chr3R	21798322	21798387	21798322..21798387	CG42261-RA,	FBgn0259146,	CG42261,	1	.
CG13260-RA	ACGACGACAACAACCACAGCTTTGGGCTATACCGCCTATGAGCAGACAACGGTCTACTATCAGCAGCAA	69	+	chr2L	16559106	16559175	16559106..16559175	CG42389-RD,CG42389-RE,	FBgn0259735,	CG42389,	1	.
CG14026-RB	AGCAGTTTGAAGAGTTCAAACGGGCTGATATGTATTCAGTGGGTCTCGTTCTGTGGGAGATGACCCGTC	69	-	chr2L	5220397	5220466	5220397..5220466	CG14026-RC,CG14026-RB,CG14026-RD,CG14026-RA,	FBgn0003716,	tkv,	1	.
CG31788-RA	ATGGCAAGGATGATGCTTTCATTCGTTTCATGAAGCAGAACATTTAGCAAAGTTAACAAAATTGGAAAA	69	-	chr2L	18257576	18257645	18257576..18257645	CG31788-RA,	FBgn0051788,	CG31788,	1	.
CG8647-RA	CGCTCCTGGTTCCAGTGCTAGGATCTTTTGAGCTGGTTGGACAGTCCATTAAAGATGCCCTGGCC	65	+	chr3L	7005335	7005849	7005335..7005389,7005838..7005849	CG42543-RB,CG42543-RG,CG42543-RJ,CG42543-RL,CG42543-RM,CG42543-RQ,CG42543-RO,	FBgn0260660,	mp,	1	.
CG6321-RA	TGCCAACTTCGCAGGACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTCGCCT	69	-	chr3L	11053247	11053316	11053247..11053316	CG6321-RA,	FBgn0036117,	CG6321,	1	.
CG8663-RC	GGGTCTCGTGCGAGGGAGAAAATCCCGCTGATGTCGAGAACATAAAAGCACGCGACTACTATCCCCG	67	+	chr2L	21388926	21388993	21388926..21388993	CG8663-RA,CG8663-RC,CG8663-RD,CG8663-RB,	FBgn0032946,	nrv3,	1	.
CG17205-RA	GCCCGAACAACCATATGAAAAAGCGCTGTGATCGTATCTTTAATATTGTTAATCACAATCCTTGCGTGG	69	-	chr3R	16226900	16226969	16226900..16226969	CG43224-RE,CG43224-RF,CG43224-RG,CG43224-RH,CG43224-RI,CG43224-RJ,CG43224-RK,	FBgn0262869,	mun,	1	.
CG15188-RA	TCTCGACAATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGAAGGTGCTCACCT	69	+	chr3R	2166036	2166105	2166036..2166105	CG15188-RA,	FBgn0037430,	Osi20,	1	.
CG15253-RA	CCACATCGTGAGCGCTATTCAGAAAATCGAATCCATTTCATGCCTGACCTTCAAAGAGGCCACCACTGA	69	-	chr2L	15615984	15616053	15615984..15616053	CG15253-RA,	FBgn0028948,	CG15253,	1	.
CG14015-RA	TTCTACAAGGTGTGGAGTCAGTCGAGAGGTGTCTCCCTGCCGGTTCTCTACGTGAGCAATGCCTACAAG	69	-	chr2L	5538188	5538257	5538188..5538257	CG14015-RA,	FBgn0031716,	CG14015,	1	.
CG3309-RA	TGGCCTCCGTTAATGAAATCGAACTCTTCCGCTCCCTGGACTTTGTCATGGAGCAACTGTACACGCTGT	69	-	chrX	5222479	5222548	5222479..5222548	CG3309-RA,	FBgn0029756,	CG3309,	1	.
CG4650-RA	GCAGTCAGTTTTGTGCTGGAGACTCGGATTCCAAACTGTGCAATGTTGACTTTAGCAGTCCTCTGGGAG	69	-	chr2L	14774114	14774183	14774114..14774183	CG4650-RB,	FBgn0032549,	CG4650,	1	.
CG2671-RA	GATAACATGCCGATTAATTACTTCTGTTCGTCCGTATAAACACAAATACCGATAAATTGGTCCGTCCCC	69	-	chr2L	10730	10799	10730..10799	CG2671-RB,CG2671-RD,CG2671-RE,CG2671-RF,CG2671-RC,CG2671-RA,CG2671-RG,CG2671-RH,CG2671-RI,CG2671-RJ,	FBgn0002121,	l(2)gl,l(2)gl,l(2)gl,l(2)gl,l(2)gl,l(2)gl,l(2)gl,l(2)gl,l(2)gl,l(2)gl,	1	.
CG16987-RA	TACGTTACATCGGACAAATTAGACGTAGACTCCATTTCGCTCCATTTCAGCTAGCATCCAACCATCCAA	69	+	chr2L	2811789	2811858	2811789..2811858	CG16987-RB,CG16987-RA,	FBgn0031461,	daw,	1	.
CG8354-RA	AGCGATTTGGCAAAAACAGCTCACAAGCCGACAGTCAGCGATACGATAGCCTGGAGGAGATTGCC	65	+	chr3R	21858742	21858807	21858742..21858807	CG8354-RA,	FBgn0002632,	m6,	1	.
CG14519-RA	ATGGTCTCGTCTGCGAAAGGCTCCAAGTCACAGTCACACGCTCACTTTAATTGGTACAGTGCGCC	65	+	chr3R	24816983	24817048	24816983..24817048				0	no match
CG6883-RA	CCAGAAAGGGTAATCCGGGATAGAGGGGCCATGTCTTAGGGGACTGAAGGATGTTTTGAAAACCACTAA	69	-	chr3L	367343	367412	367343..367412	CG42865-RA,CG42865-RB,CG42865-RC,	FBgn0262139,	trh,	1	.
CG6784-RB	TGCGTGGAATTTTGTGGCAAATACGACTGGAAGAAGGTGCGAAAGACAGGACTTCGACGTTCAGCTGAT	69	+	chr3R	19199165	19199234	19199165..19199234	CG42827-RC,CG42827-RD,	FBgn0262009,	CG42827,	1	.
CG32483-RA	TCGAATGTCATCTGGGGATCGCAGAGTGGGACCACTTTTGACATCCACAGAACGGACTTCATGAAGCCA	69	-	chr3L	688947	689016	688947..689016	CG32483-RA,	FBgn0052483,	CG32483,	1	.
CG10939-RA	GCTCTGAGACGAAAAGGGTAGCCCAACCAACTACTTGTTATAATGTCAGGATGAGGAGCTAGAGCTGGT	69	+	chr2R	13292285	13292354	13292285..13292354	CG10939-RA,	FBgn0010620,	Sip1,	1	.
CG32353-RA	AGGAGCAGCTCTATGGGGTGGGCCGCATGACAAAGACGGTTAGTTTCCATTTTGACGAACGCAAA	65	+	chr3L	8585967	8586032	8585967..8586032	CG43078-RG,	FBgn0262508,	CG43078,	1	.
CG7930-RB	TGGACACACGTTTGTTTGCTCCTGTTTGCACACTTGTTTCGCTTTTTATTTGCATTTTGCCCCAACCAT	69	+	chr3L	17041232	17041301	17041232..17041301	CG7930-RA,CG7930-RB,	FBgn0010424,	TpnC73F,	1	.
CG17244-RA	CTTCGTGACACGTGTTTACTGCATAATTATACCTGTGGAATTTTCGTTTTTATATACATGCCTGCTCCC	69	+	chr3R	18803517	18803586	18803517..18803586	CG17244-RA,	FBgn0039031,	CG17244,	1	.
CG18104-RA	GTCAGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAATCTGCAGTACGCC	65	+	chrX	403725	403983	403725..403749,403942..403983	CG18104-RA,	FBgn0023535,	arg,	1	.
CG7234-RI	TGCGAAAAAGAAAAAAAAGACCAGGCGAATTGAAAAGTAGGGGAGTAAAAAGGCTTGCGAACATTCAGT	69	+	chr2L	5563364	5563433	5563364..5563433	CG7234-RI,	FBgn0020429,	GluRIIB,	1	.
CG8369-RA	GCCTGTCCTAGAAGTCCAATTTCAACACTTTTGACGATTAAACATCTTTCACTGATTGTGCAATAATAT	69	+	chr3R	4648493	4648562	4648493..4648562	CG8369-RA,CG8369-RB,	FBgn0040532,	CG8369,	1	.
CG2867-RA	ATAGAGGGCTCGGAATTACTGTCACAAATTTTGCATTTAGTTTATCTAGCATTACAGCCCACCCATTCC	69	-	chr3R	3735515	3735584	3735515..3735584	CG2867-RA,CG2867-RB,	FBgn0004901,	Prat,	1	.
CG17735-RA	CAGTACATCTCCCTGGTCACATACTGGTTCCTTATCGAGGGTGTCCAGAAACAGTTTGAGGCTTTGCGT	69	-	chr3R	614099	614168	614099..614168	CG42574-RB,CG42574-RC,CG42574-RD,CG42574-RE,CG42574-RF,CG42574-RG,CG42574-RH,CG17735-RB,	FBgn0260794,	CG42574,	1	.
CG12812-RA	AGAGGAGGCCCTAAACCTCTTTCGCAAGCTTCTCGAGGATCTGCGTCCCTTCTACGACAACTTCATGGA	69	-	chr3R	5877866	5877935	5877866..5877935	CG12812-RA,	FBgn0037781,	Fancl,	1	.
CG31817-RA	AGGCAGGCGCTTCAAAATCAAGGGAACTCGCATGTATTCAAGGAACGGAAAATTCCCAGGAAAAGTCCA	69	-	chr2L	16331167	16331236	16331167..16331236	CG31817-RB,	FBgn0028899,	CG31817,	1	.
CG6210-RB	CCGGTGAACACATGCTCATTCAGGATGCTCCGAACAAGTCGACCATTCGCTCGCGTTACTGGAAACATC	69	-	chr3L	11161500	11161569	11161500..11161569	CG6210-RA,CG6210-RB,	FBgn0036141,	wls,	1	.
CG18643-RA	GCAGGAGTTGTACAATCAATTTTTGGATCGCCTAGGTCAATCCTACGATAGCACCAAGATTAAAG	65	+	chr3R	7256228	7256293	7256228..7256293	CG18643-RB,	FBgn0037898,	CG18643,	1	.
CG32544-RA	CTTGAGCAGGTGATCATCCATTGCTGACCCGCGAAGCCCACAAAGAAACAGGCGTTTGCTTCATG	65	+	chrX	18754966	18755031	18754966..18755031	CG32544-RA,	FBgn0052544,	CG32544,	1	.
CG4930-RA	TCCGCTCGAGGAATACCGAACTCTAATGAAGCGCTTTGTTCTGACCAAAATCATCGTTCCGGACAGCGT	69	+	chr2L	16258832	16258901	16258832..16258901	CG4930-RA,	FBgn0028515,	EndoGI,	1	.
CG7184-RA	AGATTACTCGGATGAAGACTAAGCTTCTGAAGCAGAAGGAAACAAAAAAAAGAAACATCAGCCCAAAAG	69	-	chr3L	21524521	21524590	21524521..21524590	CG7184-RA,CG7184-RB,CG7184-RC,CG7184-RD,	FBgn0029152,	Mkrn1,	1	.
CG8204-RA	TGCGACAAGGGAGTCCGACTTGAAAAAGACTGAAGTTGGCTACCAGGAGGAACCTACGCTTCATGTG	67	-	chr2R	11461003	11461070	11461003..11461070	CG8204-RA,	FBgn0034033,	CG8204,	1	.
CG7192-RA	GCTCGCCCGAGCAATCAAACACCTCAGTTTCGTAGAACCCCTCATTGGAAAGCAACCGAATCAGAATCC	69	-	chrX	17992109	17992178	17992109..17992178	CG7192-RA,CG7192-RB,CG7192-RC,	FBgn0030894,	CG7192,	1	.
CG1487-RA	GCTCGCCACTTCTAAATGGTGACCTCGTAGCTGAGCTGCCATTCACACTAATGCACCCTAAGCCC	65	-	chr3R	27874983	27875048	27874983..27875048	CG1487-RA,CG1487-RB,	FBgn0040206,	krz,	1	.
CG32198-RB	CTCTTTTCCTGGGGTTAGTGGCCCTCATTGCTGCTGTCTTTGCTCTTGATGATCCCACATCGCCG	65	+	chr3L	18520105	18520170	18520105..18520170	CG32198-RB,	FBgn0052198,	CG32198,	1	.
CG3751-RA	CAATCAACAACCGACAAAACAAAATCAGTGTTTACTTTTGGAGCGGCTTTTGTTTGTAAACTAAGGAAA	69	-	chr2R	18528049	18528118	18528049..18528118	CG3751-RA,	FBgn0261596,	RpS24,	1	.
CG4677-RA	ACCAATTAAAGATGCCCCAACTGGAAAAGTCAGCGATTCAATGCCCAAAGATCTCAGTGCCTGAGCCCT	69	-	chr3R	18847190	18847259	18847190..18847259	CG4677-RB,	FBgn0039039,	lmd,	1	.
CG11044-RA	GGCGCCTTCTTAGCGATCGAGACTTCAAGCAGCTGACTGTGAATGTCAAGTCAGGAGCCTAGATGCCAA	69	+	chr2R	16122281	16122350	16122281..16122350	CG11044-RA,	FBgn0034484,	CG11044,	1	.
CG12220-RA	GCCGAACAGTCCACAGATGATCTGAAAAACAAGCGCATCGTGGAGATGAAGAAGCCTCGTCCCATGTGG	69	+	chr3R	27079192	27079261	27079192..27079261	CG12220-RA,	FBgn0039835,	mRpL32,	1	.
CG12292-RA	TGGGGAAGATCGGCTGCTTTCTGTGCATACTGGGATCCACCATCATTGTGATTCACTCGCCCAAAGAGA	69	+	chr2L	12705725	12705794	12705725..12705794	CG12292-RA,	FBgn0032451,	spict,	1	.
CG14248-RA	GCAGTACGCCGACTACAAGACTTACTCAGTGAAAGTTGAGGTGGAGCGACAATTGGCCTCCTCTACG	67	-	chr3R	22475214	22476749	22475214..22475246,22476714..22476749	CG42242-RD,	FBgn0250908,	beat-VII,	1	.
CG31706-RA	CCCATCATGCTAAACGAAACAGATCCCGAAAACTCGGAGGTGATGCGAGAAGTGGAACGGGTCGTTTGC	69	-	chr2L	11529758	11529827	11529758..11529827	CG31706-RA,	FBgn0051706,	CG31706,	1	.
CG8223-RA	GCCGAGTTGCATTACAAGATCGGGCTGACCTATTTGATGCAGCAACTCAACAAGGAAGGAGCGACAGCA	69	+	chr3R	4578955	4579024	4578955..4579024	CG8223-RA,	FBgn0037624,	CG8223,	1	.
CG2457-RA	ACGGGACCCACTTCAGTAGAAAGTCACACGATATCAGCGATCACGGATCACGAATTACGGATCACGGAA	69	-	chrX	11619768	11619837	11619768..11619837	CG42447-RA,CG42563-RB,	FBgn0259918,FBgn0260812,	inaF-B,inaF-D,	2	.
CG16908-RA	ATTGGTTTGAGGACCGTACTCCTGGCATCTATTCATCGGCGATTGAGGTACGCACCCAGGACTGC	65	-	chr3R	5578280	5578345	5578280..5578345	CG16908-RA,	FBgn0037741,	CG16908,	1	.
CG14011-RA	AGAGAGATGGGGGCTCGTGTACTGCTACCGCGAAGAAAGGGTTCCAGGACTTTCATCAAGACCTGTG	67	-	chr2L	5580725	5580792	5580725..5580792	CG14011-RA,CG14011-RB,CG14011-RC,	FBgn0031722,	CG14011,	1	.
CG32398-RA	CGCAGTCTCAGCTCAACACAGGCAGCTCAAATATGCCAAAAGCTGTGGTTCTGCTCGCTGTAGTTGACA	69	-	chr3L	6362091	6362160	6362091..6362160				0	no match
CG5880-RA	TCCTCTACATGACGTACACCACTCTGGGTTGTCTGTTTCTTATTTTGTTTGGCTTGGAGATTGGCCACA	69	+	chr3R	22943349	22943418	22943349..22943418	CG5880-RA,	FBgn0039489,	CG5880,	1	.
CG5872-RA	GCGGTGGGAAATAGTTGGACCCGCAAGACACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACA	69	+	chr3L	20429994	20430063	20429994..20430063	CG5872-RA,	FBgn0036991,	CG5872,	1	.
CG7759-RA	GCCAAGCGCGTTTAAAGGACCTCTACTGGTTCGAATGCTCTTGCGATGCCTGTATTGACAATTGGCCCA	69	+	chr2R	7295057	7295126	7295057..7295126	CG7759-RA,CG7759-RB,	FBgn0033633,	CG7759,	1	.
CG8778-RA	CATCCGGACTGCTGCTAGCGACACGAAGATGGGTCTGGTGGAGACAAGGTTAGCCATCATACCAG	65	-	chr2R	8539318	8539383	8539318..8539383	CG8778-RA,	FBgn0033761,	CG8778,	1	.
CG15642-RA	CCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCTCTGGTGCACTTTGTTATCTGCAAGCCAGGCT	69	-	chrX	15361002	15361071	15361002..15361071	CG15642-RA,	FBgn0030642,	CG15642,	1	.
CG17562-RA	AGCATCTCAACTGCAGTTCCGATAAGGTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACA	69	+	chr3R	12441694	12441763	12441694..12441763	CG17562-RA,	FBgn0038449,	CG17562,	1	.
CG6847-RA	GGCGAAATCTGCAGGATTATGCCACCACTGACAGTCCAGAGATTATGGAACCTGTTTTAAAGGCCACCA	69	+	chrX	17816905	17816974	17816905..17816974	CG6847-RA,	FBgn0030884,	CG6847,	1	.
CG13891-RA	TCTGCCTAAAATGGTCTAGGGAACTTGCTACAAAATCAAGTGTGTATATAATAATGATCTAGAAACCGG	69	-	chr3L	433794	433863	433794..433863	CG13891-RA,	FBgn0035139,	CG13891,	1	.
CG4552-RA	TCCGCCTTTCCGCATCAAGCTTTATTTCATGAACGGCCACTGATACAAAAATCAGAGACACAAAGTGCA	69	+	chr2L	1131988	1132057	1131988..1132057	CG4552-RA,	FBgn0031304,	CG4552,	1	.
CG15904-RA	GGTGGACAAGCACATGCTGGACCTGCATCGTGATCCATTCAACACCTCCTTTGGCTACACGGTAA	65	-	chr2R	15399614	15399679	15399614..15399679	CG15904-RA,	FBgn0034458,	Ir56d,	1	.
CG31217-RA	TCAAAGGGCAATTGTGTATTAGGTTATTTCAAGTCAGTTCTTTGTAAAGGACAATTGCCAATTGCCACA	69	-	chr3R	12478247	12478316	12478247..12478316	CG31217-RA,	FBgn0051217,	modSP,	1	.
CG6282-RB	GCGCACCCCTAGATTGTTGCACTCCTTCAAAGTTTACGCTAGTCTCTGTTGAATCCACTGTTGCTCCCC	69	+	chr3L	8609614	8609683	8609614..8609683	CG6282-RA,CG6282-RB,CG6282-RC,	FBgn0035914,	CG6282,	1	.
CG1395-RA	ACCAACGAACAAGCAAACGAAAAATGTGCATTATAATCTAAAAACGTGAGGAACCATGTCATTTAAATT	69	-	chr3R	25077937	25078006	25077937..25078006	CG1395-RA,	FBgn0003525,	stg,	1	.
CG8498-RA	TGTCCGAATTGCAGGAATTCAACCAGGCGGCCGAAGATGTTAAGAACCTAAACACCACACCCGGG	65	-	chr2L	8162186	8162324	8162186..8162237,8162310..8162324	CG8498-RA,	FBgn0031992,	CG8498,	1	.
CG8357-RA	CAACCTCTGCAACGTGTCCGTGATGAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAA	66	+	chr2R	7936128	7936194	7936128..7936194	CG8357-RA,	FBgn0024732,	Drep-1,	1	.
CG1709-RC	TCTTCGGTGTGGTGATGAGCTGGCACAATCATACGTATTTCAGGAACAGGATCTCCCTGCTCTACGAGT	69	+	chr3R	24961977	24962046	24961977..24962046	CG1709-RC,CG1709-RB,CG1709-RF,CG1709-RG,CG1709-RH,CG1709-RA,CG1709-RD,CG1709-RE,CG1709-RI,CG1709-RJ,	FBgn0028671,	Vha100-1,	1	.
CG7148-RA	GGCCATTTGCAGCTGGACTCATTCGGCAGACTACCTAAAGCGCTATACCTGTATGACAGAGCTGCAGCT	69	-	chr3L	21824133	21824202	21824133..21824202	CG7148-RA,	FBgn0046301,	CG7148,	1	.
CG1030-RA	TCAATCTTAGTTTGTACATTTTCGATTGTGTGTTCAATGCAATTGGTCGGAACCATACTGATTTTCGCA	69	-	chr3R	2649158	2649227	2649158..2649227	CG1030-RA,CG1030-RB,	FBgn0003339,	Scr,	1	.
CG11015-RA	TCACCACTTAAGACCGACCGAAATTTTCGCAAAACGAACAATGGCATCGATCTGTGGACGCATGGCGC	68	+	chr2L	6557862	6557930	6557862..6557930	CG11015-RA,	FBgn0031830,	CG11015,	1	.
CG3689-RB	TGCTGCGCCATTATTCGAGCTATACGACAACTCGCAAGGATATGGACCCATTATCTCATCTCTGCCGCA	69	+	chr3L	9406336	9406405	9406336..9406405	CG3689-RB,CG3689-RC,	FBgn0035987,	CG3689,	1	.
CG4527-RD	TAGTCCTTTGATCTATCCCCAGTGTGCTTCCCAGCCATTCGATACGACCCAGGGCCCTGAAACTG	65	-	chr2R	20280943	20281008	20280943..20281008	CG4527-RC,CG4527-RD,CG4527-RB,	FBgn0035001,	slik,	1	.
CG32491-RK	CATGCAGTACCGCACCTACTTCCATTGCTTGACCAGGAACTGCCCGACCTACTACGTCCTCGTGG	65	-	chr3R	17184162	17184227	17184162..17184227	CG32491-RK,CG32491-RL,	FBgn0002781,	mod(mdg4),mod(mdg4),	1	.
CG10887-RA	GCGCGCTTATGAAGAATCATCCTCCGAAACGTGACAGGCACTATCAAGGCTCCGATCACAATGTGGCC	68	+	chr3R	15942485	15942553	15942485..15942553	CG10887-RA,	FBgn0038773,	CG10887,	1	.
CG7804-RA	GCATGCATTCATTTAATCCACATGGTTACCAAATGAATCGCGTCATGAACTAGACCCACAAGACCAATG	69	-	chr3L	15465705	15465774	15465705..15465774	CG7804-RA,	FBgn0036496,	CG7804,	1	.
CG4688-RA	TGCCTTATGCTAATCAAATTGCTCGATATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAG	69	+	chr2R	9127349	9127418	9127349..9127418	CG4688-RA,	FBgn0033817,	CG4688,	1	.
CG4879-RA	AGCATCCCACAGGAAAACGTCAAAGGAATCGTTATCGAACTTGAAGAAGGAAGGATCCGACTCCAGAGT	69	-	chr3L	14621729	14621798	14621729..14621798	CG4879-RA,CG4879-RB,CG4879-RC,	FBgn0027375,	RecQ5,	1	.
CG32491-RB	CCTAGCAACCTGGCTGACTTTGGTAACGAGAGCTTCTTGCCCAAAACCAAGGGTAAACGGCCACAGAAT	69	-	chr3R	17181193	17181262	17181193..17181262	CG32491-RH,CG32491-RB,	FBgn0002781,	mod(mdg4),mod(mdg4),	1	.
CG9238-RB	CCTATGATAAGGGTCAGAATCGCAACTCGAGCCAGCAAATAAGGTCCACCCTGACCGATGCCTTGGC	67	-	chr3L	14535273	14535340	14535273..14535340	CG9238-RA,CG9238-RB,	FBgn0036428,	CG9238,	1	.
CG8873-RA	CGACTTCTATCCCAGCGATTTCCTTGTTTACTAGCCCACACTTCGTTCTCCCTCTTCCGCAGTGCCC	67	-	chr2L	4948554	4948621	4948554..4948621	CG8873-RA,	FBgn0031652,	jet,	1	.
CG15143-RA	TGTTCAGTCTTAGAAGCACTCTCGATGTTTCGCATGCCTCAAAATTGGGATCATTTGTCGGCAGGGGCT	69	-	chr2L	17521735	17521804	17521735..17521804	CG15143-RA,	FBgn0032647,	CG15143,	1	.
CG17745-RA	GGATGAGGAGATGAGCCTGGCTAAAAACCGAGCAGATGAGCAGGCGAAATGGACTTTTAAATGTTGCCA	69	+	chr2L	11966754	11966823	11966754..11966823				0	no match
CG8132-RA	CAGCGATCCCGTGCCAATGACAACCAACTCTTTGTGGTCACAACATCACCAGCCCGTGACACAAG	65	+	chr3R	5227937	5228002	5227937..5228002	CG8132-RA,	FBgn0037687,	CG8132,	1	.
CG2614-RA	TCCAACATAGCTGGTCACAATGAGGTGATCATGGATCTGCACCGACCATCTGAGCAAACCCCTCGCTAT	69	+	chr2L	20657653	20657722	20657653..20657722	CG2614-RA,	FBgn0032873,	CG2614,	1	.
CG15629-RA	ACGAGAGTTTGCTCACCGATCTGAAGGCCCATGGCTATGATCAAATCCAAATGAGTTTGATCTGCCCGT	69	+	chr2L	4815397	4815466	4815397..4815466	CG15629-RA,	FBgn0031630,	CG15629,	1	.
CG4606-RA	GGAGGTGTAAGGTGGCTGCAGTGTATTTAGCGGAAATAGTTATCATATTTATTTGTGGTTTAGTTCTAA	69	+	chr3R	11648649	11648718	11648649..11648718	CG4606-RA,	FBgn0026616,	alpha-Man-IIb,	1	.
CG9073-RA	TGATTCAGTCGTTAGCGGTGATCGATCTGGTGAACAACTAGCACAGGATTTAAAATGGATAACAT	65	-	chr2R	7162726	7162791	7162726..7162791	CG9073-RA,	FBgn0010423,	TpnC47D,	1	.
CG8967-RA	CAAGGGAGTAGTACGTCTGTTTGGCCTGTGTCGCGAAAAGGATCCGCACTACATGGTGCTGGAGT	65	-	chr2R	7890461	7890526	7890461..7890526	CG8967-RA,	FBgn0004839,	otk,	1	.
CG4921-RA	AGCGCCAAGACGGGGGAGAATGTTGAAGAGGCCTTTCTCAAGTGCTCAAAGACCATACTGGCCAAAATT	69	+	chr2R	13461855	13461924	13461855..13461924	CG4921-RB,CG4921-RA,CG4921-RC,	FBgn0016701,	Rab4,	1	.
CG10029-RA	CGAGTCCAAGTTTAAGGACCTCAAGCCATCCAAGCACCGTTACACGTTGGTCAACCGCACAAGGG	65	-	chr3R	3141565	3141630	3141565..3141630	CG10029-RA,	FBgn0037498,	CG10029,	1	.
CG8388-RA	ATGCGCATGCATGAGATCAAATCTCGCGGACGACTATACCGCTGTGAACAGTGCTCCAAGGCCTT	65	-	chr2R	11897800	11897865	11897800..11897865	CG8388-RA,	FBgn0034062,	CG8388,	1	.
CG4390-RA	GTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACTTCATCCAGAAGAGCGGATTCCAGCAGC	65	-	chr3R	15882882	15882947	15882882..15882947	CG4390-RB,CG4390-RA,	FBgn0038771,	CG4390,	1	.
CG33107-RA	TGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATGTCCTTTCTCCGGAAGTCGTCCA	69	-	chr3R	18410260	18410329	18410260..18410329	CG33107-RA,	FBgn0053107,	CG33107,	1	.
CG9040-RA	CTCCGCCGAAACGACCTCCAGTTCAACTCCAACCAAGGCAGAAAAAGCCAAGAAAACTGCTGCAC	65	+	chr3L	13981295	13981360	13981295..13981360	CG9040-RA,	FBgn0036394,	CG9040,	1	.
CG10950-RA	TGGCTGTTTGCGCGTCATGGACCAAATTTAGTATGCTTTCACCCGACCAAGTTCTGCAACGCAAACTGT	69	+	chr2R	13083478	13083547	13083478..13083547	CG10950-RA,	FBgn0034205,	CG10950,	1	.
CG31133-RA	TGCGTTGCGTTCTCCTGGAAGCAAATGCGACACCCTTATCCGACTATCATCTGGTTCAGGAAGAGCACC	69	-	chr3R	19973866	19973935	19973866..19973935	CG31133-RA,	FBgn0051133,	Slimp,	1	.
CG8327-RB	GCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCG	69	+	chr3R	5458670	5458739	5458670..5458739	CG8327-RA,CG8327-RB,CG8327-RC,	FBgn0037723,	SpdS,	1	.
CG4956-RA	GGCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGACAGTATCCTGTGGCAGGTG	69	-	chr3R	21603599	21603668	21603599..21603668	CG4956-RA,	FBgn0039370,	CG4956,	1	.
CG5786-RA	AGCAGCCACACTGATCCATACACGTGCGGGAGAAAAGTGAACAAAAACATTGAAACATGGGCGGTAAGA	69	+	chr3R	16941969	16942038	16941969..16942038	CG5786-RA,	FBgn0010770,	ppan,	1	.
CG15099-RA	CGCTGTGGCCCATAATCATAGCGGAAATGGTACAGGTGTTTCTACAAATGGAACAAGAGCTCAAATCGG	69	-	chr2R	14725553	14725622	14725553..14725622	CG15099-RA,	FBgn0034400,	CG15099,	1	.
CG32172-RA	CATTGTGAAATCAGCGAGCTCATTGAGTGAATCGTTTTATGACTGAGTTGTTCGCAACCCATAAT	65	-	chr3L	17392716	17392781	17392716..17392781				0	no match
CG11053-RA	GACGTGATCTATGACAGTGAGATAGCTCAGTTGACGAATGTGACCCGAGAGGAGATGATTCTGGGCACC	69	+	chr2L	6624371	6624440	6624371..6624440	CG34345-RA,	FBgn0085374,	CG34345,	1	.
CG17632-RB	TGCGTTTGCCCAGACAGACAGACAGACGGACAGATTTAAGGTTTCCCCCGAAAGATCCCGAGCAGATAT	69	-	chr2R	19425897	19425966	19425897..19425966	CG17632-RA,CG17632-RB,	FBgn0000241,	bw,	1	.
CG17257-RA	GGCTGAGGACAGTCGAGAGCGATCCCACATCCTAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGT	69	+	chr2L	3030869	3030938	3030869..3030938	CG17257-RB,CG17257-RA,	FBgn0031495,	GABPI,	1	.
CG41105-RC	GGGTGAGGTAAACAAAGTGGCCTACAGAAACGGAAAGGACGCCTTCAAATTTCGCCAACCCGTGC	65	+	chrX	22276383	22276448	22276383..22276448	CG34334-RA,	FBgn0085363,	CG34334,	1	.
CG3306-RA	GCCCGTCGACTTTGAGATGAAGGATCATTACACGATGAGTTTCAAACCCTGGACGTATTGCACGCCGGA	69	+	chr3L	9594970	9595039	9594970..9595039	CG3306-RA,	FBgn0036016,	CG3306,	1	.
CG8251-RA	CCTGTTATCCTGGCGTTGCTAGGCGTTTGGTACTCCAACTTCTTCAAGGCGGAAACACATGCCCT	65	-	chr2R	4799391	4799456	4799391..4799456	CG8251-RA,CG8251-RB,CG8251-RC,	FBgn0003074,	Pgi,	1	.
CG17047-RA	TGACCAGCAACTATATGCCTGACTTGAGTTACAACATCTGCATCAGATCAGCTACTTCCGCCAGCATGA	69	+	chr2R	9188251	9188320	9188251..9188320	CG17047-RA,	FBgn0033827,	CG17047,	1	.
CG6219-RD	TATCAGCGGACGGTATCACGGCAAGATTTGTCCAAAATGCGTGCTTATTCGTCCAACTGAAGTCCGGCC	69	+	chr3R	20047262	20047331	20047262..20047331	CG6219-RE,CG6219-RD,CG6219-RA,	FBgn0026257,	cav,	1	.
CG7856-RA	GCTGTCGTTGCATTGGATCACCCATGACCTTGACAGCGTAGACCACTTCGACGTTTTTGTGGACAACGT	69	-	chr2R	1945204	1945273	1945204..1945273	CG7856-RA,	FBgn0033056,	CG7856,	1	.
CG1232-RA	AGAAATCGTTTGTTTTTAACGACAGTTGGAAATAGTTAACGAGGGTCAAGCAATGGCAACAGAAGCGCA	69	+	chr3L	4193614	4193683	4193614..4193683	CG1232-RA,CG1232-RB,	FBgn0003710,	tipE,	1	.
CG12523-RA	AGGTGGTGCTGAAGCTGTGAAGATCATCAAAATCATCTCGGAATCGAATTCTGGAGCTGGAGACTCC	67	+	chr3L	10794811	10794878	10794811..10794878	CG12523-RA,	FBgn0036102,	CG12523,	1	.
CG8384-RE	ACGATGCGAGTGCTTTTAGTTTGTTTTATGTGAGCGGTTTTTGTAATTTAGCTGAAAAGTCAGACAGCG	69	+	chr3R	21874882	21874951	21874882..21874951	CG8384-RH,	FBgn0001139,	gro,	1	.
CG3244-RA	CGTCTGGTCTCGTCTGGTTGTCTGCTTGGACAATTCGGCGACTACAGTATAGAAACCGTGCTGTGCAGT	69	-	chr2L	4801839	4801908	4801839..4801908	CG3244-RA,	FBgn0031629,	Clect27,	1	.
CG31823-RA	ACCAAATTGCTGGAAGAGACGCCGATACAGGTGGGTATTTATTCTGGCATTCTGGACCTACTGTGCGCA	69	-	chr2L	15899144	15899213	15899144..15899213	CG31823-RA,	FBgn0051823,	CG31823,	1	.
CG10369-RA	TGCCATGTCATCGATGAGACCAGCCCGTTGTCTCAGTTCACCACAGCGAAACTCTTCAATGCTGC	65	-	chr2L	18711580	18711645	18711580..18711645	CG10369-RA,CG10369-RB,	FBgn0032706,	Irk3,	1	.
CG4643-RA	CGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGTTCGAGAAGAACTACGAGTTCCTCGGT	69	-	chr2R	9108957	9109026	9108957..9109026	CG4643-RB,CG4643-RA,	FBgn0043010,	Fsn,	1	.
CG11309-RB	CGGGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTACTTGTTCATCAAGGCCG	68	-	chr3L	21295931	21295999	21295931..21295999	CG11309-RB,CG11309-RA,	FBgn0037070,	CG11309,	1	.
CG12268-RA	AGGCGCTGTCGGAAGATTTAATTTGCAGATACAACAATAAGCTGCCCATAATCATCACAAGGCCCTCGA	69	-	chr3R	19770409	19770478	19770409..19770478	CG12268-RA,CG12268-RB,CG12268-RC,	FBgn0039131,	CG12268,	1	.
CG7890-RA	AGGCTAGGCACCTTCACTGATCTGCTCAATTTACATATCACATCCATCCCCATTGGAGTATGCTTGACT	69	+	chrX	19145367	19145436	19145367..19145436	CG7890-RA,	FBgn0031005,	Hs3st-B,	1	.
CG2267-RA	CCCAAGCCAACGGAGAATGTCCTGGAACCACTTCATCGGAGCTCTACCAGTCCTGATCTTTCGAAGCTT	69	-	chr3R	26453926	26453995	26453926..26453995	CG2267-RA,	FBgn0039792,	CG2267,	1	.
CG8497-RA	ACGAGGAGCACGATGGTGGATACAATCTGTACAAGGAGGAGTTTGAGAACTTTGGCTTCCATGTGC	66	+	chrX	15686951	15687017	15686951..15687017	CG8497-RB,CG8497-RA,	FBgn0026374,	Rhp,	1	.
CG12231-RA	CGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGGGAGCCGGTAATGCTGAACATCTACGACCT	69	-	chrX	19425547	19425616	19425547..19425616	CG12231-RA,	FBgn0031026,	CG12231,	1	.
CG15573-RB	AGTCCGAGGAAGTCACTGAAAAACCCAGCCGAAAGACCTACGAACGCAAGAGCTACGACAGACGAACCT	69	-	chrX	4136154	4136223	4136154..4136223	CG15573-RB,	FBgn0041252,	Femcoat,	1	.
CG7847-RA	ACAATATGCTACAGTTAGCCTAGATAATATTTCACACATCCAAGAATGGTCAGGATAGGAAATCGAGAT	69	+	chr3R	13958599	13958668	13958599..13958668	CG7847-RA,CG7847-RB,CG7847-RC,	FBgn0003499,	sr,	1	.
CG18356-RA	CGGCGGCTGTGATAAGTTTGAGCCACTTGAACTCGTTAACGTGCCATTCGAGACACATCGCAGCG	65	+	chr2R	8622608	8623025	8622608..8622624,8622976..8623025				0	no match
CG17148-RA	GCTGTCCGAAGCTTCCTTGTGTTTTCCTATGTACCCTTCAGTGCTTTTGGACCTGTTGTGGAGCCGTCA	69	+	chr3L	12184680	12184749	12184680..12184749	CG17148-RA,	FBgn0000594,	Est-P,	1	.
CG31744-RA	AGGTGAGGTTCAGAGCCAACTACAATCGATGGTGGGTCAACTTGATGAGGTATTTGGCATGCAAGGGCT	69	+	chr2L	17179522	17179591	17179522..17179591	CG31744-RA,	FBgn0045486,	Gr36b,	1	.
CG3792-RA	AGCGCCGCTTACTAATTAAGTACGACCACGACCTCCGAGATAAACAGAAGTCAATTGTTCGCAGCACAA	69	+	chr2L	4977526	4977595	4977526..4977595	CG3792-RA,	FBgn0031662,	CG3792,	1	.
CG3738-RA	CCGAGAAACTCGTACCTAAAAAGCAGTTGCAGTGTTTGCCAATTGATTCAACACCACGGCTAAAGTTGC	69	+	chr2L	9330868	9330937	9330868..9330937	CG3738-RA,	FBgn0010314,	Cks30A,	1	.
CG13900-RA	GCCTGCTGTCAGGTGCTTCACAGAAGTCGGAGAACATTTGCTCCTTCCATGTGGGCGAGATAATCATGT	69	-	chr3L	828224	828293	828224..828293	CG13900-RA,CG13900-RB,	FBgn0035162,	CG13900,	1	.
CG14781-RA	CTGATTAGTGCTGGGGATCTCAAGAAGGAGTCCCCCAAAGACACGACAGAGGCGTCCAAGGATGC	65	+	chrX	1371521	1371586	1371521..1371586	CG14781-RA,	FBgn0260986,	mei-38,	1	.
CG2680-RA	CGCAGGGAAATTACGAGAAACGTGCTACCTGAAATTAACTATATCAACCCAAGATAAAGTAGTAATGTT	69	-	chrX	2600276	2600345	2600276..2600345	CG2680-RB,	FBgn0024995,	CG2680,	1	.
CG8922-RA	TTTCTTCTGTGACAAACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCTTCGAGGAGCCAGCG	65	.	.	.	.	.	CG8922-RA,	FBgn0002590,	RpS5a,	1	.
CG18155-RA	AACCTGCAAAAACGAACTCGGTGGATCCGTGGATAGTGGCCTAATACCGGTGGAGGATATCGGCG	65	+	chrX	7224662	7224727	7224662..7224727	CG18155-RB,	FBgn0029945,	CG18155,	1	.
CG10325-RA	TGGGATCCCTACTATCCTACTGTCCTTTGTTTTTCAAGTCCCACTGGTCGAGTGATATTCCCGGGTGGC	69	-	chr3R	12633619	12633688	12633619..12633688	CG10325-RB,CG10325-RA,CG10325-RC,CG10325-RD,	FBgn0000014,	abd-A,	1	.
CG15150-RA	TCCCAACAAACGGATCAAATCAGATGACGAGGAGTCCAAGAAATCTGTCTTGCCCTACAACTGCCCTGT	69	-	chr2L	18010647	18010716	18010647..18010716	CG15150-RB,CG15150-RC,	FBgn0032660,	elfless,	1	.
CG13392-RA	CCCGCTGCTACACGTACCGTATTCCCTCGATTACGGAAAATCCCAGAGAAGTGTTTCTGTTGTGGCGGA	69	-	chr2L	8382143	8382212	8382143..8382212	CG13392-RA,	FBgn0032033,	CG13392,	1	.
CG7720-RB	CCGACAAACAGCAGCTACGAATTCTGAAGTCGATCACTGTCGTCTGTGGACTGATTATTATGGGCGTGG	69	-	chr3R	14586213	14586282	14586213..14586282	CG7720-RB,CG7720-RA,CG7720-RC,CG7720-RD,CG7720-RE,	FBgn0038652,	CG7720,	1	.
CG16916-RA	GGTGCGTGAGAATCGCTACATCGTTTTGGCCAAGGACTTCGAGAAGGGCTACAAGAACAATATCAAGAA	69	+	chrX	11020619	11020688	11020619..11020688	CG16916-RA,	FBgn0028686,	Rpt3,	1	.
CG4168-RA	GAATGAGACAAAGTGGACAAATGAATTATGGCAAAACAAACAAACGAAAAAGCTGCTGGTATGCC	65	-	chr2L	15162186	15162251	15162186..15162251	CG4168-RB,	FBgn0028888,	CG4168,	1	.
CG15234-RA	GGTGGTTGAATGGTTGGCTGTAGAGCTTGTGGGTGACGTACGCATGAGTTATGGCTAGTACCTGCATCT	69	-	chr2R	2495887	2495956	2495887..2495956				0	no match
CG17002-RB	ACAACACTGACTACGCTTCCCACGTGAAGTCGGATAAACGAAATAAAGCACACAACTATGGCGTCCCTA	69	+	chr2R	2876345	2876414	2876345..2876414	CG17002-RB,CG17002-RC,CG17002-RD,	FBgn0033122,	CG17002,	1	.
CG17150-RC	GCCCAAGCTGAAAGTCCTGTCCGAGGAAACGGATCGCATAATGGTGAACATCGAACGTGAGACGG	65	+	chr3L	4887930	4887995	4887930..4887995	CG17150-RD,	FBgn0035581,	CG17150,	1	.
CG8461-RA	AAGCGGCTAAACAAAAACCGACCTCGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGC	65	-	chr3R	10338933	10338998	10338933..10338998	CG8461-RA,	FBgn0038235,	CG8461,	1	.
CG4217-RA	TCAAGCGGGACCAACAAATCTACGTGGAGGAGCGAACAAAGTACGATGCCACACTCACGGAGGAG	65	-	chr3R	16402139	16402204	16402139..16402204	CG4217-RA,CG4217-RB,	FBgn0038805,	TFAM,	1	.
CG3801-RA	GCGGGCGAAAACATTGTAGCCATCAGCGGAATGACAGTCACTCCCCTTTGGGCATCTCATTTCCAATCA	69	-	chr3L	19044562	19044631	19044562..19044631	CG3801-RA,	FBgn0015586,	Acp76A,	1	.
CG31269-RA	TGTTGGGTCTTTCGGGACTCGTATCCATAACAGCCATACGAATCAAGGGAAACTCAACGGATGGTCGGT	69	+	chr3R	12952877	12952946	12952877..12952946	CG31269-RB,	FBgn0051269,	CG31269,	1	.
CG12919-RA	CGGACAGTGCATCCTCAGCCTCAAATGATGACAATGTGTTCGATGACTTTACCAGCTACAATGCCCACA	69	+	chr2R	5970387	5970456	5970387..5970456	CG12919-RA,CG12919-RB,	FBgn0033483,	egr,	1	.
CG5842-RA	TGGAGCGATGGTGTCTACGCAGCACGAATACGAGGCGAAGATCCTCTTCTTTCTGTTCATGGTGATCGT	69	-	chr3L	14179910	14179979	14179910..14179979	CG5842-RA,	FBgn0036414,	nan,	1	.
CG2762-RA	TTCCCCCGACACCAGAGATCAAGATGTGACTTCCAACCCCACTACCAACCAACACTCGAATTCCGATGT	69	+	chr2L	539362	539431	539362..539431	CG2762-RA,	FBgn0003963,	ush,	1	.
CG10177-RA	GGTGGACCCACGTATCCCAAGGATATGGAAAGTGTCATGAGTCCAGAGGCTACCCAGTTGATCGACGGA	69	-	chr3R	19346001	19346070	19346001..19346070	CG10177-RA,	FBgn0039083,	CG10177,	1	.
CG18426-RA	AGTGCATGTAATCCTCAAGCGAAAGTACCGCCAGTACATGAATCGCAAGGGTGGCTTCAACCGGC	65	-	chr2R	19735999	19736064	19735999..19736064	CG18426-RA,	FBgn0021895,	ytr,	1	.
CG33056-RA	GCCGAGGATAGCGTGGACATAATTGCATTCTTCTACACACCGCCACAAATGGTTAAGGACACGTTGAAC	69	-	chr3L	21191660	21191729	21191660..21191729	CG33056-RA,CG33056-RB,CG33056-RC,CG33056-RD,CG33056-RE,	FBgn0053056,	CG33056,	1	.
CG9940-RA	GGCGGTCTCTCCAAGAAGCCCAGTGGTTACTCAAAGGTGCACGTCAATGTGCTTGGCAAGATCAAG	66	-	chrX	13579865	13579931	13579865..13579931	CG9940-RB,CG9940-RA,	FBgn0030512,	CG9940,	1	.
CG2559-RA	CGGCTTCCAGCAACGCATCCAGAACATCGTCGAATTGGGCTACTACCAGACGACCGATGGTCATATGAT	69	+	chrX	12385753	12385822	12385753..12385822	CG2559-RA,	FBgn0002562,	Lsp1alpha,	1	.
CG13673-RA	CGACAAGGATGACGAGGACATGGTCGTAGATATGGACTTGCTGGGAGGGTGGTCACAGAGTCGTTGA	67	+	chr3L	8244086	8244153	8244086..8244153				0	no match
CG32440-RA	TCTCGGCCCTAAATTGTCCGTTCGACGAGGAATTTGCCTTTTTTTCGTTTCAATCCCAAGATCAGTGGG	69	+	chr3L	21353381	21353450	21353381..21353450	CG32440-RA,	FBgn0052440,	CG32440,	1	.
CG12909-RA	AGCTCGCCGATTCCTTGGAAGTCGAGGGTGAAATAGTTAAGATCGCTAGCTAGCCGAATATCCCACCTT	69	+	chr2R	6198532	6198601	6198532..6198601	CG12909-RA,	FBgn0033507,	CG12909,	1	.
CG6338-RA	GGGCAAGGATGTCAAGCCAGTCTTGAATTGGGTCCTGGACAGCAAGTTTAAGCGAGAACAAATACGCCT	69	-	chr3R	22737702	22737771	22737702..22737771	CG6338-RA,	FBgn0004510,	Ets97D,	1	.
CG6738-RA	CCGCCGGTCATGGTTCTCTATTGTTGCCCGATACAGCCGGAGTTAAGTTGAACTATGTGTTGAACAAGC	69	+	chr3R	18926009	18926078	18926009..18926078	CG6738-RA,	FBgn0039053,	CG6738,	1	.
CG16956-RA	TCCTGGTGGATGAAGATGGAACCAGTACCACGACATCATTACCACCAAGTAAGGACCAAACGCAACCGA	69	-	chr2L	13413898	13413967	13413898..13413967	CG16956-RA,	FBgn0032523,	CG16956,	1	.
CG41065-RA	CACAATATGTGGACCTTGTACCCGAGCGGGCCGTGCGCAAAAAGGGGAAAAAAACCATGGGATTC	65	+	chr2RHet	359429	359494	359429..359494				0	no match
CG32466-RA	CAGCGGCCCTATCTCTACGATGCCATCAGCTTCCCGAACAAGAACGTGAACCAGAACAACGCGAA	65	-	chr3R	3099887	3099952	3099887..3099952	CG42277-RC,CG42277-RF,CG42277-RE,	FBgn0259172,	rn,	1	.
CG14045-RA	AAACCTCTGTGCTGTCCCTCTCCAGTTGCAAGTGCTTAACCGTCATTCCGGAGGTTACTAGTGAACCGC	69	-	chrX	2272635	2272704	2272635..2272704	CG14045-RA,CG14045-RC,	FBgn0040387,	PsGEF,	1	.
CG13142-RA	AGGAAATCATTCAGACAGCCAACGATATCAGCAAGGGACATGAAGACCGCCGTACAAACTCCACGGA	67	+	chr2L	10439718	10439785	10439718..10439785	CG13142-RB,CG13142-RC,	FBgn0032251,	CG13142,	1	.
CG12187-RA	ACCCGAGACACCTATATCTGTATGGTACACGACTAAAGTCCGAGAGTTGTGCGCATTTGTAGACCCCGT	69	-	chr3L	2671378	2671447	2671378..2671447	CG43375-RA,	FBgn0263177,	CG43375,	1	.
CG2381-RF	AGCATAAAAGGTGATAGGAACAAACCATTCAAAAACATGACTAAGTGCAATTTTTGCGTACTTTCTTTG	69	-	chr4	300207	300276	300207..300276	CG2381-RB,CG2381-RF,CG2381-RA,CG2381-RE,CG2381-RG,CG2381-RH,CG2381-RI,CG2381-RJ,	FBgn0039900,	Syt7,	1	.
CG8171-RA	CAATCGGAGAAGCCACAACATTTCACCAAGATCAACGAAGACGATGTGCTCGCGTCGGCCCAGTC	65	-	chr2R	11265368	11265433	11265368..11265433	CG8171-RA,	FBgn0000996,	dup,	1	.
CG11981-RA	CGATCGCCTGATGTTCCGCAAGAATCTGTACGAGACACGCGAAAACCGTGAAATGTGTCCCAAGCCCT	68	-	chr3R	4831534	4831602	4831534..4831602	CG11981-RA,	FBgn0026380,	Prosbeta3,	1	.
CG10361-RA	CCCGAATCGTTGAACTGGCTAGGAAATACAATGCCCTGGTGTTTGTGGACGAGTGTCATGCTACGGGC	68	-	chr3L	11792729	11792797	11792729..11792797	CG10361-RA,	FBgn0036208,	CG10361,	1	.
CG7656-RA	CCGCCATCCATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGATCTGTGCATA	69	-	chr3L	15580287	15580356	15580287..15580356	CG7656-RA,CG7656-RD,CG7656-RE,	FBgn0036516,	CG7656,	1	.
CG10231-RA	AACTTGTATTGGTCATAACTCTTCAAAAGGTTTTCTAGACAAGTCCGTTGTGGCGAGATTTCTGGATCA	69	-	chr2L	18533142	18533211	18533142..18533211	CG34341-RB,CG34341-RC,CG34341-RD,CG34341-RE,	FBgn0085370,	Pde11,	1	.
CG13248-RA	CCTCCTCACCGACCAGTGAGATGATAGAGGAAGTCTTAGCTGGAAGACTAAAGGCCCAGTTCAGGTGCT	69	-	chr3L	20401470	20401539	20401470..20401539	CG13248-RA,	FBgn0036984,	CG13248,	1	.
CG8277-RA	CGAGATTACCGAGATTGACAGTGTGGAGACCTTCTGGAGCTTGTACCATACCATCAAGACCCCAGCGGA	69	+	chr3L	7888374	7888443	7888374..7888443	CG8277-RA,	FBgn0035823,	eIF4E-5,	1	.
CG12110-RB	AGCGAAGGTTCCAGTCGGTCTGACCTGGACATTAACGATCCTGTTTGTGAGAAGTTTTGGCACGGCAC	68	+	chr2R	2141525	2141593	2141525..2141593	CG12110-RE,CG12110-RC,CG12110-RB,CG12110-RA,CG12110-RD,CG12110-RF,	FBgn0033075,	Pld,	1	.
CG7251-RA	GGCATGGACTCACTGCGAGGCACCATATCTCAACTCTATGTGAATCCCACTCCATGGATGGGTCCAGTT	69	-	chr2L	5587286	5587355	5587286..5587355	CG7251-RA,	FBgn0031723,	CG7251,	1	.
CG32405-RA	AGCCAGGACCTTTTGAAAAGTCTCTACCAGAATCCAATCCAACTAAACATGCAGTCCTCCAGCATCTGT	69	-	chr3L	6132940	6133009	6132940..6133009	CG32405-RA,	FBgn0052405,	Cpr65Av,	1	.
CG14632-RA	GCGGCTCGTGGATCACAATCGCTGCAGGGATCTCCGCTTTTGGCAAAGAGAGCCACCTCCTTCAG	65	-	chrX	787840	787905	787840..787905	CG14632-RA,CG14632-RB,	FBgn0029538,	CG14632,	1	.
CG9775-RA	CGGAGCCGGAAATCAAGGAATGTCCGCGGTCAACTCTAGGCTGCTGAATGAATTCAAGAGGCTCCAC	67	-	chr3R	465764	465831	465764..465831	CG9775-RD,CG9775-RA,CG9775-RC,	FBgn0037261,	CG9775,	1	.
CG12865-RA	GGGTGGTGCATTAGGAGGTCTAACAAATCGCGGTGATGTTGGTCTGAATGCCGTATCGTTAGCCTTGGC	69	+	chr2R	10626525	10626594	10626525..10626594	CG12865-RA,	FBgn0033957,	CG12865,	1	.
CG12857-RA	AGGACAATCCCGCCATGGATGTAGTTCGCAATTTGATGCTGACTAGGATCCGCAAGTTTCTGCTCACCT	69	-	chr2R	10646271	10646340	10646271..10646340	CG12857-RA,	FBgn0033963,	CG12857,	1	.
CG2292-RA	TCCGTCTGGCCTTCACCCTGCTATTGTACACCTTCTTTTCGCTCTTTGGATCCGGAAACATAGCGTCAA	69	-	chr2R	5951664	5951733	5951664..5951733	CG2292-RA,	FBgn0033479,	CG2292,	1	.
CG8286-RA	AAACCCATGGTCCGTTGTCAGAGAGTACCACAAACAAACACAAATCGCAACAAAACACACTGAGCACTT	69	+	chr3R	5415120	5415189	5415120..5415189	CG8286-RA,	FBgn0037718,	P58IPK,	1	.
CG13970-RA	TCGCCATGTGGACAAAGGCCCGGGAGAGAGATGCCCAAAAGAAGAGAGATAAGCTCCAAAGGAACGTAA	69	-	chr2L	20103465	20103534	20103465..20103534	CG13970-RA,	FBgn0032851,	CG13970,	1	.
CG5011-RA	TAGAATGCAGATAAGATTACAGCCTACTGAAACTATGTTACTTTTGTATAAAAGGTCTGGCAGGAGTGA	69	+	chr2L	1200753	1200822	1200753..1200822				0	no match
CG4611-RA	TTGCAGCGAGGTATTAGCCCGGACTACTACAGCTTCAATGCAATGCTGAGATGTGCAAGGGATTGTGGC	69	+	chr3L	5130534	5130603	5130534..5130603	CG4611-RA,	FBgn0035591,	CG4611,	1	.
CG10182-RA	TCCCAGATAGATGACAACGGACACAATAACCTTGAGGAGCTCAAAGTAACGACTCCAACACCTGC	65	-	chr3R	19412938	19413003	19412938..19413003	CG10182-RA,	FBgn0039091,	CG10182,	1	.
CG5827-RB	TTGAATGCTCCGCTATGCTAGCTCCCGTAGTTTTAATCTGACAACGCGATTTTCCTGTGGTTTGCGCCG	69	+	chr2L	5071789	5071858	5071789..5071858	CG5827-RC,CG5827-RB,CG5827-RA,	FBgn0261608,	RpL37A,	1	.
CG5794-RD	CGGAGAGCGAGAAAGAGACCTCAACGGAGAACGACAAACCATCAGATGTTTCCATGGAATCCAGCGGTA	69	-	chr3R	20462784	20462853	20462784..20462853	CG5794-RD,CG5794-RF,	FBgn0039214,	CG5794,	1	.
CG15203-RA	AGGATTAGCCACCGGGAGAAGAGGACCACCGAAGCCAAGGATGCAATGAATCTTTCTTAGTTGCAACGT	69	+	chrX	10961980	10962049	10961980..10962049	CG15203-RA,	FBgn0030261,	CG15203,	1	.
CG14755-RA	GAATCCACGACGTCACAGTCACAGTACACAACGCTAGACAAGATGCTGGGCACGGTGCTGCCATG	65	+	chr2R	4235079	4235144	4235079..4235144	CG42698-RC,	FBgn0261588,	pdm3,	1	.
CG6259-RA	GCGGCCATGAAGGATGGAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCAGATCGAG	69	-	chr3L	17613828	17613897	17613828..17613897	CG6259-RA,	FBgn0036740,	CG6259,	1	.
CG10993-RA	GGGCCCGTCTAAACGAACTCATGAACATCGTGCCGGTCACCAACTCTCAGAACCATCTCAAGTTCCTCA	69	-	chrX	13684506	13684575	13684506..13684575	CG10993-RA,	FBgn0030524,	CG10993,	1	.
CG7903-RA	ACCCGGGCCAAATATGGGCGGCAATAGAAGATTTTAAGCAAGTGCAATGCAGCAACGATGTTTGCCAGT	69	-	chr3R	25819451	25819520	25819451..25819520	CG7903-RA,	FBgn0039730,	CG7903,	1	.
CG15704-RA	CGCCTGTGAACACGGTGAACTTAAGCATTAGAGGTTTAAGCTTATCAGGATATAGGAGTGCACCCAGCT	69	+	chr2R	12167542	12167611	12167542..12167611	CG15704-RA,	FBgn0034103,	CG15704,	1	.
CG7138-RA	CGGCTTGATGAAGGATTCGACTGTGGGTGATCTGGATGAGGAACTGACTAACCTCAACCGGGACATGGT	69	+	chr2L	7800796	7800865	7800796..7800865	CG7138-RA,CG7138-RB,	FBgn0031951,	r2d2,	1	.
CG10264-RA	CGGCGATTGCTAAATTTCGAGCTGGAACTTCCAAGGCTTAGGATCCGGGCGAAGTACAACCTGAAGGGA	69	+	chr3R	11870013	11870082	11870013..11870082	CG10264-RA,	FBgn0038394,	CG10264,	1	.
CG17035-RB	TGCGACCTGGACTTCAAGAGGTGCTTGTACAAGTACTGCGACAGCTACGAGAAGTCCATAGCCAGCGAT	69	+	chr3L	15948871	15948940	15948871..15948940	CG17035-RA,CG17035-RC,	FBgn0036545,	GXIVsPLA2,	1	.
CG31778-RA	CCCTGGGCATATTTTTCGATCCGGAGACACAACGTTGTCGCTACATGGGATGCAGTAATCGAAAGCTGT	69	-	chr2L	3704510	3704579	3704510..3704579	CG31778-RA,	FBgn0051778,	CG31778,	1	.
CG5933-RA	GCCGGATGAGATTTATGGTATTATCGAGCGTCTAAGCCCGGGTACTCGCAAGATCGAGCTCTTTGGGCG	69	+	chr3R	19859640	19859709	19859640..19859709	CG5933-RA,	FBgn0039139,	Mta70,	1	.
CG15874-RA	ACATTATCCTGGTGAGACATGGCGAGTACACGAGGACCCCGAATGGAAGCCACCTCACGGAACTG	65	-	chr2R	20319916	20319981	20319916..20319981	CG15874-RA,	FBgn0035004,	Pgam5-2,	1	.
CG1689-RA	TGAGAGATTAGGCGCCCTAACTTCAAGAGCTCAGAACTAATGAAATAAAACCCAACTCCTATCTTAAAT	69	+	chrX	9197155	9197224	9197155..9197224	CG1689-RA,CG1689-RB,	FBgn0002576,	lz,	1	.
CG4894-RC	ACAATCGCCGCTAAGAGGACAGGGCAATCAGACTTACTCCTCATAGCACCCACATTGTAAGCTATACAT	69	+	chr2L	16189701	16189770	16189701..16189770	CG4894-RB,CG4894-RA,CG4894-RC,CG4894-RD,	FBgn0001991,	Ca-alpha1D,	1	.
CG3842-RB	GGGAAATGAGCGAAATTGCCACCTGACTGACATCCCCCTAAAAAGTTGTTAGTTGTTATTACAGCATTC	69	+	chrX	6235282	6235351	6235282..6235351	CG3842-RB,	FBgn0029866,	CG3842,	1	.
CG33129-RE	TGGACCACGTCTACCCATGAGTTGGCTACGTCGACTGTGTATCACTCTTTTCTGCAAGATGTGGCGAAT	69	-	chr2L	10968506	10968575	10968506..10968575	CG33129-RE,	FBgn0053129,	CG33129,	1	.
CG11910-RA	ACAGGTTCTGCGCATGGAAAACTGTTCGCTGGAAACTTTCGAAAAACCGCAGTTTGAAGGTGCCAGCAA	69	-	chr3R	21208053	21208122	21208053..21208122	CG11910-RA,	FBgn0039332,	alrm,	1	.
CG11759-RA	ACACGTATCTGCGCTCCGAGTACTTGGACAATTGCGATCTCTACAACGACAATGCCGACAATGACAGCA	69	-	chrX	11229101	11229170	11229101..11229170	CG11759-RF,CG11759-RG,CG11759-RH,CG11759-RI,CG11759-RJ,CG11759-RK,	FBgn0028421,	Kap3,	1	.
CG15016-RA	AAATTAAATTCCTTACCAGCTCATACAATTCACCGGTCACAATGCCTTCTTACGAACTAGCACTGGT	67	+	chr3L	4364659	4364726	4364659..4364726	CG15016-RB,	FBgn0035534,	mRpS6,	1	.
CG1154-RA	CAACTCACTGTGCTTCAATTCTTATGGCTAACTGCACTTGCTATTTTCAATTACCTCTCGTACTTCCGC	69	+	chr3R	2107935	2108004	2107935..2108004	CG1154-RA,	FBgn0037419,	Osi12,	1	.
CG7021-RA	GGTTACTTCCCGGGAACTGGTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTAC	66	+	chr3R	20691831	20691897	20691831..20691897	CG7021-RA,CG7021-RB,	FBgn0013949,	Ela,	1	.
CG11882-RA	CCGCCTTCCACCGATGTTGCAATCCTCAAGGAGCACATCGACATGAGATTTGAGAAGCTGACGCTGTTA	69	-	chr3R	24972998	24973067	24972998..24973067	CG11882-RA,	FBgn0039642,	CG11882,	1	.
CG3803-RA	GAGTAACCCGACTGACAGAGTCCGGACTGTCCATGGTCACTTGGAAGCTGACGGGTGAACGTATG	65	-	chr2R	19841036	19841101	19841036..19841101	CG3803-RA,	FBgn0034938,	CG3803,	1	.
CG2105-RA	TCAAGGTCAAGGCCGTAATTCCGCATCCGCAATACAACATGGCTATTGCCCACGACAATGACATAGCCC	69	+	chr2R	3447912	3447981	3447912..3447981	CG2105-RB,	FBgn0033192,	Corin,	1	.
CG14654-RA	GGATGATGGGGATGAAACTACGGTAGATATAGATACCCCCAAGCAGTCGAGTGGGCTTCGCTGGGCG	67	-	chr3R	593655	593722	593655..593722	CG14654-RA,	FBgn0037273,	CG14654,	1	.
CG15760-RA	CGATAGTAGATAAGTTCCGTTTGTAGTATTAACAAGTTCTGTAAGATTTCTATAGTGCGACACAC	65	+	chrX	13568381	13568446	13568381..13568446	CG15760-RA,	FBgn0030508,	CG15760,	1	.
CG11722-RA	TCCCAAGTTCGTGGACAAGCTCAATATGAAAGACTCCAGCTTGGACGGACGATTGAAAGACGTTTATGT	69	-	chr3R	5870866	5870935	5870866..5870935	CG11722-RA,	FBgn0037777,	CG11722,	1	.
CG11835-RA	TCCAGTTCCAGAAGTTATCAAAACGCTAGCACCGGAAGTCCCCAACGTTTCTCAGGCACCTGCAC	65	-	chr2L	561536	561601	561536..561601	CG11835-RA,	FBgn0031264,	CG11835,	1	.
CG3159-RA	AGCTGGCCTAGATTTAGTTTTAGTTGACCTCCTATTTTCCCGAAACTCACGTTTGGTTATACGCCCCTG	69	-	chr2L	737432	737501	737432..737501	CG3159-RA,CG3159-RC,CG3159-RD,	FBgn0026438,	Eaat2,	1	.
CG30084-RA	TCAAACCACCATGTCGGAGGAGAACGAAAGGGCCGTAAGTCAGTTGCTCAAGGAGGGTAAGCGTC	65	-	chr2R	11651464	11651529	11651464..11651529	CG30084-RI,	FBgn0083919,	Zasp52,	1	.
CG17294-RA	AAGGAGCACTCATTGATCTCAGTGGCACCTTGCATGTGGAGGATGAACCTACTCCGAATGCTGTCGAGG	69	+	chr2L	8377093	8377162	8377093..8377162	CG17294-RA,	FBgn0032032,	CG17294,	1	.
CG6241-RA	AGAATTCGGAGGCATGACAAGCATGAACTGCGTCAGTTGTTCCCCTGTTCCTTCCGTTGGCTCTTG	66	-	chr3R	5966677	5966743	5966677..5966743	CG6241-RA,	FBgn0037792,	CG6241,	1	.
CG17285-RB	ACCATTGACATGGACATCACTTCGGATCAGGATCAGGATGCTATTATTCGCATCTTCCTGGGACCCGCA	69	-	chr3L	14088413	14088482	14088413..14088482	CG17285-RA,CG17285-RB,	FBgn0000639,	Fbp1,	1	.
CG15280-RA	TGCCAGCTTCACAAACCGACAGTGCAAATATGCAAGTGTGTACACGGACGTTATGAGCCACATCGACTT	69	-	chr2L	14782105	14782174	14782105..14782174	CR15280-RA,	FBgn0028867,	CR15280,	1	.
CG1041-RA	ACCCTAGCTTCGGGCAATCTGGCTCACAGGACTTTGCTCCTGCACAGAAAATACAGTTCTCTTCGAGCA	69	-	chr3R	2197751	2197820	2197751..2197820	CG1041-RA,CG1041-RB,	FBgn0037440,	CG1041,	1	.
CG9048-RA	CGACTGCCGAGAAACATAAGCTTTGATGGATTTGACAAAAAATATACCCAAAAATATGTACTGCAATTA	69	-	chr2L	5959717	5959786	5959717..5959786	CG9048-RA,	FBgn0003979,	Vm26Aa,	1	.
CG31555-RA	ACCATCGACTCCCGACCTCTAGAGATCCCTCCAGTTTCCCCGAACAGAAACTAGCGAAGTAACCACGTT	69	+	chr3R	1638026	1638095	1638026..1638095	CG31555-RB,	FBgn0051555,	CG31555,	1	.
CG15609-RC	CCGAGGAGACAGAGGAGCAACTGCTATCGCAATGGTTTACGCTGGTCAACAAGAAGAACGCACTCCT	67	-	chr2R	12896377	12896444	12896377..12896444	CG15609-RB,CG15609-RF,CG15609-RG,	FBgn0034180,	CG15609,	1	.
CG11866-RA	AAGCATTAGGACCTACGCATATACACTTTACATATTTTTTACCACTTATTTACATATAAAGCGTGCATG	69	+	chr2R	6008529	6008598	6008529..6008598	CG11866-RA,CG11866-RB,	FBgn0033486,	CG11866,	1	.
CG31460-RA	CCCAGCGTGGATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAATGAACCATTCGTCTGCTTCTT	69	+	chr3R	4389035	4389104	4389035..4389104	CG31460-RA,	FBgn0051460,	CG31460,	1	.
CG32180-RA	GGCCACGCGAGATAGGGATTTCTTTGTACATGCGTTGAGTTTCTTGGTTAGCCAGCGATAAGCGTAGGT	69	-	chr3L	17554668	17554737	17554668..17554737	CG32180-RA,CG32180-RC,CG32180-RB,CG32180-RD,CG32180-RE,	FBgn0000567,	Eip74EF,	1	.
CG7379-RA	TGTGCCCCATCGAGTGGTTCCATTTTTCGTGCGTCTCCCTGGTACTAAAACCAAAAGGCAAGTGGTTCT	69	-	chr3R	13622488	13622557	13622488..13622557	CG7379-RA,	FBgn0038546,	CG7379,	1	.
CG10472-RA	AGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTGCACGAGGATTGGATCGCCGAGACCATCACCA	69	-	chr3L	6055578	6055647	6055578..6055647	CG10472-RA,	FBgn0035670,	CG10472,	1	.
CG3051-RB	CACTCGGACAGTCCTGAGGATTGACCATTACCCGGAAGACACAGTCCCACAAAGGAAAGCTGGGG	65	+	chrX	1272259	1272324	1272259..1272324	CG3051-RA,CG3051-RB,CG3051-RC,	FBgn0023169,	SNF1A,	1	.
CG5972-RA	TCCACACGGAGCAGATGTATAAGCACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACA	69	+	chr2L	6125609	6125678	6125609..6125678	CG5972-RA,	FBgn0031781,	Arc-p20,	1	.
CG15344-RA	ATTCCCGCTCCCAATTTTACTCCCACTTCTACTTCCACTCCGGCTACCGCATCTCCATCTCCAGC	65	+	chrX	8218762	8218827	8218762..8218827	CG15344-RA,	FBgn0030032,	CG15344,	1	.
CG7297-RA	TGGTCAACCCAAATTAGCTCCTTGTAGTTCGGACCACGTATTCCCAAGTCCAGAGCAGTATTGGAGCCT	69	+	chr3L	15678996	15679065	15678996..15679065	CG7297-RA,	FBgn0036529,	pgant8,	1	.
CG4070-RA	TCGCAGTCCAATTTGAAACGCAAATATGCCAAGGCAAATGGATTTCCGGTGGCGTAACTTCGTTGCAGA	69	+	chrX	12573422	12573491	12573422..12573491	CG4070-RB,CG4070-RA,	FBgn0011837,	Tis11,	1	.
CG6840-RA	TTTTAATAAACAATTTATAAGTTTTGCAGTAACTAACGAAAAGTAAGACATCAAAATGAACGCACC	66	-	chr2L	17410293	17410359	17410293..17410359	CG6840-RA,	FBgn0032634,	Rpb11,	1	.
CG15663-RA	GAAATCCAGAGAGCAAGGTAAATCATTTGTCAAGGGTCCTCAGCTTTTTCTATTTGTGTTTGTAA	65	+	chr2R	17164094	17164159	17164094..17164159				0	no match
CG14536-RA	CCACCAAATGCCAATAATTCTGTGATTTCCGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCG	66	-	chr2L	7796956	7797022	7796956..7797022	CG14536-RA,CG14536-RB,	FBgn0031950,	Herp,	1	.
CG12115-RA	GCATTCGAAAGAAGACATGCAAGGTCAAGTTTACCACCAAGGGCATCCTGTACGTTGCCAATGGA	65	-	chrX	9083567	9083632	9083567..9083632	CG12115-RA,	FBgn0030097,	CG12115,	1	.
CG2120-RA	AGCGACCATTTGCCTGTCCACTCTGTCCAGCACGATTTCTGCGCAAATCCAATCATAAGCAACACCTCA	69	+	chrX	8030834	8030903	8030834..8030903	CG2120-RB,	FBgn0030005,	CG2120,	1	.
CG15859-RA	ACCGCCAGTGGTCTACAACTACAACTACAACTACAGAAGGCAGCCAAATGTGACTTCGCAACTGACACT	69	-	chr2R	20742264	20742333	20742264..20742333				0	no match
CG13646-RA	GGTTTCCTTACCGTGCTCAACAGCTACAGCATATTGGCCTTCCAGTTTGACATCCACCCCGTCCTG	66	+	chr3R	20774248	20774314	20774248..20774314	CG13646-RA,	FBgn0039255,	CG13646,	1	.
CG9194-RA	AGTCTGGGCAGGCAATCATCTCGCTATGGCAACCATCTCGAACTTCCCGACTATGATGCTCCACC	65	+	chr3L	1240689	1240754	1240689..1240754	CG9194-RA,	FBgn0035192,	CG9194,	1	.
CG5064-RA	ACCCCTGACATGGAACCCATACCATGCAAACCGATTTTCTTTGACCTGGCTATGACCTACGTGGAGCT	68	+	chr3L	8970091	8970159	8970091..8970159	CG5064-RA,	FBgn0035947,	Srp68,	1	.
CG3163-RA	CGCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAGGGCGAGAAGTACGAGCCC	69	+	chr2R	19917083	19917152	19917083..19917152	CG3163-RA,	FBgn0034961,	CG3163,	1	.
CG10527-RA	GCCTACAAGGAGTTCGAAATCTATGTGACCAACTAAGCCACGGATCGAATGTCCAACGCACTGAAACAA	69	-	chr2R	16958053	16958122	16958053..16958122	CG10527-RA,	FBgn0034583,	CG10527,	1	.
CG8710-RB	CGCCCGAGGCATCTGACCAGGTAGAGAATGAACCTGCTCCTAAGAGTATTTCTCGATGCACGCTCAAGG	69	-	chr2R	4013919	4013988	4013919..4013988	CG8710-RC,CG8710-RD,	FBgn0033265,	coil,	1	.
CG13140-RA	GCCTATCTCCTGAATCCCTCGGTCAGTGTGCTTACTGTGAAGCAAGTCAATTTCCGTCATGCCGGCAAC	69	+	chr2L	10378737	10378806	10378737..10378806	CG13140-RA,	FBgn0032233,	dpr19,	1	.
CG13126-RA	ACCGTCACACCTCCCTCTACAGTTATGCCATCCTGAAGAAGGGTTCCCAATCCGATAGCTCAAGCTCCT	69	-	chr2L	9952869	9952938	9952869..9952938	CG13126-RA,	FBgn0032168,	CG13126,	1	.
CG8767-RA	TGCAAGCGCGTAGATTGCCCTATCACACACTCGATTGCAATGAGACCATAGCCTACCAGGTGGTCAAGC	69	-	chr2R	8639560	8639629	8639560..8639629	CG8767-RA,	FBgn0033773,	mos,	1	.
CG11525-RB	GAGTGTAGTAGTGCTGGTTGAGGTAGAGTGTGTATATTTTGCTAAAGTGCATCATAATTCTTTTGGCAT	69	-	chr3R	27424712	27424781	27424712..27424781	CG11525-RD,CG11525-RA,CG11525-RE,CG11525-RB,CG11525-RC,	FBgn0039858,	CycG,	1	.
CG2014-RA	GAAATGATGCACATTGCGGCTCCTCGCTACGACATGGATCGCTACGGTGTGGTGTTCCGAGCATC	65	+	chr3R	25341836	25341901	25341836..25341901	CG2014-RA,	FBgn0039669,	CG2014,	1	.
CG9657-RA	GGACCTGGAGTTGTGTGGCAGAAGGCCCAAGAAACAGCTCGATTGGAAGTACCCAATTTTAGTGCGGAT	69	+	chrX	7314371	7314440	7314371..7314440	CG9657-RA,	FBgn0029950,	CG9657,	1	.
CG31098-RA	GCCTGACTCCACTGATCTTCAGGGAGGGAGCTGGTTTCGAAAACCTTGAGGATCTGAACTCACGCACTG	69	-	chr3R	21117324	21117393	21117324..21117393	CG31098-RA,	FBgn0051098,	CG31098,	1	.
CG13076-RB	GGAGACAACTCCAATTCCTAGAACACACCAAGAAGAAAAGACATGCGCATAGTACCCAGTAATTAAGCA	69	+	chr3L	16024876	16024945	16024876..16024945	CG13076-RA,CG13076-RB,	FBgn0044028,	Notum,	1	.
CG33351-RA	ATTGGTATAAGTATTGGACAAGGTTTATAACCAATCGCCATGAGGTGGAAAAGAAGTGCTTCAGAGGGC	69	-	chr2R	2831016	2831085	2831016..2831085	CG33351-RA,	FBgn0066293,	CheB42b,	1	.
CG9637-RA	ATTCACCGGTGCATTCTATTATGCAACCACGGTGCTAACCACCATTGGCTACGGACACTCGACGC	65	-	chr3R	9496994	9497137	9496994..9497012,9497090..9497137	CG9637-RC,	FBgn0038165,	Task6,	1	.
CG9712-RA	CATGCAGATAAAGGTATCGATGTATGTGGATCATAATGGCAAGGTATATCTGCCTTACTTGCACGACTG	69	+	chr3L	16836290	16836359	16836290..16836359	CG9712-RA,	FBgn0036666,	TSG101,	1	.
CG1678-RA	ACAAAATCAAAATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCATGGTGGCTCTGGCTGCTGTCCA	67	-	chrX	21273688	21273755	21273688..21273755	CG1678-RA,	FBgn0031176,	CG1678,	1	.
CG31845-RA	GCGTATGAGCAATGTTTAAAGGGTGCTACCTGACAGAGTTCAGTCCACTCACCTGACAAACAACTGCT	68	+	chr2L	13777718	13777786	13777718..13777786	CR31845-RB,	FBgn0051845,	CR31845,	1	.
CG40169-RA	GTAAGGACACTTCTTGTTTTATCGGACTGATGAGTGAAAGTCGGCTGAGATTAATTGCCCGGCAA	65	+	chr2L	20243267	20243332	20243267..20243332				0	no match
CG10366-RA	TGCCGACTACGAACCGAATGAAGATCGTGTACTAATGAGCCTCTGCGATGTGTATGGCATTCAGGAGGA	69	+	chr2L	19584988	19585057	19584988..19585057	CG10366-RA,	FBgn0032814,	CG10366,	1	.
CG14103-RA	GGGGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGTTCCTGCACCAGGATCCAAAGCTGGA	69	-	chr3L	19797620	19797689	19797620..19797689	CG14103-RA,	FBgn0036908,	CG14103,	1	.
CG1308-RA	TGCCTGATCTGCCGTCAACTTCCTCTGGTCCCGTCTTCTTCAATGATTTCCAAATGTACAGCACCAGCA	69	+	chr3L	4200720	4200789	4200720..4200789	CG43367-RC,CG43367-RD,CG43367-RE,CG43367-RF,	FBgn0263110,	CG43367,	1	.
CG15283-RA	AAAGGCAGCAAGTAATTTGAAAAAAGATGATGTCGAAGAAATGGAAACACCAGCGAATAGACAGAG	66	-	chr2L	14450729	14450795	14450729..14450795	CG15283-RB,	FBgn0028844,	CG15283,	1	.
CG33173-RA	GGAATCAGTGGTTCGATCGGGAGACGAAATCCTGCCAAGATCGCGAGTTGGTACTGAATTGCCCAGTCA	69	+	chrX	15674015	15674084	15674015..15674084	CG33173-RA,	FBgn0053173,	CG33173,	1	.
CG9764-RA	CCGGGGGTCCCAGAACCGAAAAAATGACTTACCACACACCAACGAAATGTTAAGTGCAAGCAATCCACT	69	-	chr3R	9254691	9254760	9254691..9254760	CG9764-RA,CG9764-RB,CG9764-RC,CG9764-RD,	FBgn0004049,	yrt,	1	.
CG6090-RA	AAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGAAGTAACCATTTACCAGAAGGATTTGTTTGGAGCAA	69	-	chr3R	21884185	21884254	21884185..21884254	CG6090-RA,CG6090-RB,CG6090-RC,	FBgn0039406,	RpL34a,	1	.
CG2009-RA	GATGACAGATGCAGGGAAACTAAAGCAAACCACGATTTTGTCTTCAGAAAATAAGAAGCGTGAACGGGA	69	-	chr4	481401	481470	481401..481470	CG2009-RA,	FBgn0026262,	bip2,	1	.
CG3290-RA	TGCATCCAGCATAATTGGTACCTTCCAATCGGGCTTGATGGACTTTCACATGGACGCTGATCCCACCT	68	-	chr2R	18094307	18094375	18094307..18094375	CG3290-RA,	FBgn0034711,	CG3290,	1	.
CG41120-RA	GGCACAGGCTTGGAAAGGGAAAAGGAAAGTCTTTGGTTGGTAACGGTGGTTCTGCGAAAAGCTTCCGTT	69	-	chr2L	22667350	22667419	22667350..22667419				0	no match
CG10534-RA	GCCCCAAACATTACCAAACCAATCCTATCCCTGTTTTCAAAGGATGGGAACTAAGTCAACCAGCACCAC	69	-	chr3L	6126125	6126194	6126125..6126194	CG10534-RA,	FBgn0020637,	Lcp65Ag2,	1	.
CG3349-RA	GAAGCCATGGATTTTCCAAAACAAATAGCGAATTCCGAAAAAACACTTTTGGACCAAATCGCTTCGCTA	69	+	chr3L	14975224	14975293	14975224..14975293	CG3349-RA,	FBgn0036459,	CG3349,	1	.
CG11929-RA	GAGGACATTCCCACGTTCTGTGAGCTGGACAAAAACAGGCAGTACGATCCCAGGGACTGTCCACT	65	+	chr2L	4686739	4686804	4686739..4686804	CG11929-RA,	FBgn0031620,	CG11929,	1	.
CG7437-RA	CGCCCAGTGCAATTGTTAAAACACCCATTCACTAAATTCAACAATCAACCGCTAGCTAAGCAACAGCCA	69	+	chr3L	21918329	21918398	21918329..21918398	CG7437-RF,CG7437-RC,CG7437-RA,CG7437-RG,CG7437-RH,	FBgn0262737,	mub,	1	.
CG33166-RA	CACCTGGCCAATGTGCTTCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTCTG	69	-	chr3L	1476588	1476657	1476588..1476657	CG33166-RB,CG33166-RA,	FBgn0020248,	stet,	1	.
CG11491-RA	ACCGGGCATCCAATAGGAGCTAAGTTGGAACGCCATCTTTTAGAGAACGAAGGAGAGCTGGTCAGTCAG	69	+	chrX	1553619	1553688	1553619..1553688	CG11491-RA,CG11491-RL,	FBgn0000210,	br,	1	.
CG3986-RA	AGTCCTATCCACTGCTGAAGACCATGAATCGTGCTCTTGGCAGGGAAGTGAGTGGAGGAAGTGGC	65	-	chr2R	16953187	16953252	16953187..16953252	CG3986-RA,	FBgn0022700,	Cht4,	1	.
CG11387-RA	TAGCCGTTAAGGTAGCCTTAGGTTGAGGAGTTGTAATAGTTGTAGCTAAAAGTTTAGAGACGCTATGCG	69	+	chrX	7568870	7568939	7568870..7568939	CG11387-RA,CG11387-RC,CG11387-RD,	FBgn0004198,	ct,	1	.
CG6193-RA	TGATGCACGGTCCAAGTCGCTATTTGAGCAGTGCATTCTGAGCGGCATGCATAAGTCCAACGACG	65	+	chr3R	19993178	19993243	19993178..19993243	CG6193-RA,	FBgn0026598,	Apc2,	1	.
CG15772-RA	GATGCACCTCCAGAACTACACTCCCCTGATCCTTCTCATCGATTTCGTGGAGAAGACCCGAACCAAGCG	69	+	chrX	5647260	5647329	5647260..5647329	CG15772-RA,	FBgn0029799,	CG15772,	1	.
CG14258-RA	GCTGGCCACCTCAGATGGTTATTTCGCTGATGTGCAAAGTGTAAAGGTAAATTTCCGCGAGATCAAGCA	69	+	chr3R	22919584	22919653	22919584..22919653	CG14258-RA,	FBgn0039482,	CG14258,	1	.
CG1176-RA	CGGGGCTATGCCATCGTCAAGTGCGTGTTTACTAGAGCCCTCACGGATGCTAGAAACAAACCCACTGTA	69	-	chr3R	3076565	3076634	3076565..3076634	CG1176-RA,CG1176-RC,CG10050-RA	FBgn0011282,FBgn0037492	Pbprp4,CG10050	2	.
CG9922-RA	AGATTATTAGTTAAATTATGTCGATTGTGTTATCGCTAGTAGTCCATCTCTAATCGCACGAGGTGAAGA	69	-	chr3R	9861708	9861777	9861708..9861777	CG9922-RA,	FBgn0038196,	CG9922,	1	.
CG14129-RA	CGAGCATACAGCATCCACAGCAAATGAATATCCTGTGCACCGGAACACTGGGACGCCAAAGGATGC	66	-	chr3L	11855859	11855925	11855859..11855925	CG34420-RC,	FBgn0085449,	CG34420,	1	.
CG31664-RA	TGCAGGGTTACGTGGAGAATGAGGTGGACCTTAACAGCGATGGAGCGTGCAATCAGGAATGTGGTTACT	69	-	chr2L	1825525	1825594	1825525..1825594	CG31664-RB,	FBgn0051664,	CG31664,	1	.
CG33203-RC	GCTCCAATCTGTGCATAGTTGTGAACGAAACTCAACCGCTCATTTTCTTGCTGATGAGTGCCCAGTAGT	69	-	chr3R	24696905	24696974	24696905..24696974	CG33203-RC,CG33203-RB,CG33203-RD,CG33203-RE,	FBgn0053203,	CG33203,	1	.
CG32081-RA	TGGCCTCCATACTCATCTACACCGGATTCTCCCTGATGATGTACTATCTGTTCGTCGACCTGCCTCCGA	69	+	chr3L	11021408	11021477	11021408..11021477	CG32081-RA,	FBgn0052081,	CG32081,	1	.
CG30185-RA	AGGAGGTATATTTGAATCTCTCCCGCTGGTTCGATCACCTCCAGAATCGCGCGGATGTGCACCAG	65	+	chr2R	19432169	19432234	19432169..19432234	CG30185-RA,	FBgn0050185,	CG30185,	1	.
CG15293-RA	GGCATTCTGGTCCCAGGCAGTAATGTATTCAAGCAGATATTCCCCGACATCTCCAGAGAGCCTGGTCCA	69	-	chr2L	14108594	14108663	14108594..14108663	CG15293-RA,	FBgn0028526,	CG15293,	1	.
CG3419-RA	TGCGCCCAAACTAATCACAGGATTTAGTGCCAAGTATCCCTTCCAAAAGGACCACCCACTCTTGCGCTT	69	+	chr2R	20300796	20300865	20300796..20300865	CG3419-RA,CG3419-RB,	FBgn0035002,	CG3419,	1	.
CG33478-RA	CCTGCATCACCAACATAGGATTCGACTCACTCTGCTCCTCACTGTTCATCTTCCTCAAGTGCCAGCTGG	69	+	chr2R	6027481	6027550	6027481..6027550	CG33478-RA,	FBgn0026388,	Or46a,	1	.
CG31448-RA	CCGTTTTGGTTTTTTTGTCCTTTGGGTTCTTCCTCTTTTTGGTTGCTGTCCGCATCAACAGACCGGAGT	69	+	chr3R	12369474	12369543	12369474..12369543				0	no match
CG1319-RA	TCAGTTATAGTAAGAGATTGCAAAGGAATCCTAACCAGAATGCTAGTCATAAACTCATGCAGAGCTGCC	69	+	chr3L	4292584	4292653	4292584..4292653	CG1319-RB,	FBgn0035529,	CG1319,	1	.
CG33197-RB	ACTTCGTAAGTACTCCAAACTGAATGACAATCGCCACCTAAAGTAGTCCGCCTTGAAACCGATCTTCAA	69	+	chr2R	13248654	13248723	13248654..13248723	CG33197-RB,	FBgn0261642,	mbl,	1	.
CG5442-RA	ACTAGGGCCAATGCTGTATCCTGTTCCGGATCTATGGCTCCATCTGTGTCATGCTGTACCCGAACAGC	68	-	chr2L	12432123	12432191	12432123..12432191	CG5442-RB,CG5442-RA,CG5442-RC,CG5442-RD,	FBgn0040286,	SC35,	1	.
CG15083-RA	TGCCATTGAAGCCATCTCCTTTCCGTTTGCCGTCTTCGGGGTTATCTTCCACTACGGAGGATATCGC	67	+	chr2R	14723958	14724025	14723958..14724025	CG15083-RA,	FBgn0034399,	CG15083,	1	.
CG8756-RA	GCGATGTGCTCGAGAGTAAATGTACCAAGTCGGGTTTGAAAGAAATTCAGTGTCCTTCGGGTCTGGCCT	69	-	chr3L	19685427	19685835	19685427..19685477,19685816..19685835				0	no match
CG5818-RA	TGTTCCCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGATGCCAACCTTTG	66	-	chr2L	16328275	16328341	16328275..16328341	CG5818-RA,	FBgn0001995,	mRpL4,	1	.
CG11342-RA	ACCACAGCCCTGGAAATGCTATCAGAAAGCAGAGAGACGCCTGAAAAAAGCCGGAGAGATATTCCCTCT	69	-	chr3L	4366830	4366899	4366830..4366899	CG11342-RA,	FBgn0035537,	CG11342,	1	.
CG32356-RB	CGGCAACATCGAGAAAGCAACCTGCGATCGCAATGCTCAATGGAAACGCTTTTACGGTTAAGCGGCTC	68	+	chr3L	8368097	8368165	8368097..8368165	CG32356-RA,CG32356-RB,	FBgn0001253,	ImpE1,	1	.
CG4022-RA	CCCAGTGAACGAATGAGAAACAAAAGGATATCTTATTGAAACTGATTAAACTAAAGACTGCCGAATAGT	69	-	chr3L	9403084	9403153	9403084..9403153	CG4022-RA,	FBgn0035986,	CG4022,	1	.
CG15777-RA	GAAGCCAGAGCCACTGAAGCCACCAATAGCCACCGTCAGCTATCAGGATGAACAGAAGCCATCAC	65	-	chrX	5550578	5550643	5550578..5550643	CG42265-RA,CG42265-RB,	FBgn0259150,	CG42265,	1	.
CG14275-RA	ATCAGCGTTGGAGAAGTCTACTGGAAATCTAGTAACTGCAATCAAAAACCACAAAATGGCAATCACAAC	69	+	chr2L	8329648	8329717	8329648..8329717	CG14275-RA,CG14275-RB,	FBgn0032022,	CG14275,	1	.
CG11333-RA	CGCCTGCGTCACATTGGCTGCAACATAGCAACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAG	69	+	chr3R	27289652	27289721	27289652..27289721	CG11333-RA,	FBgn0039850,	CG11333,	1	.
CG40158-RA	GGCAATGGCGCTGATGTCCGAGGCAAAACTCGAGATTGGAAAATGGGTGTTCAGCAGCAACAAAATCGA	69	.	.	.	.	.				0	no match
CG3038-RA	CATCGACTGCTGTGTGCGAGATCTCAAGAAGCACAACTATGAGTGCGAGTACTCCGTGGGACCCA	65	-	chrX	138647	138712	138647..138712	CG3038-RB,CG3038-RA,	FBgn0040373,	CG3038,	1	.
CG40461-RA	TGCCGGCCATTGAAATCCGACGAAGAGTTCTTCAACCGACCATCTACTCGAAGATGGCCATTGTGACCA	69	-	chr2RHet	2376482	2376551	2376482..2376551				0	no match
CG13037-RA	CCCCAATCCCCAGATGAAGGTCCACTACAAACTGACCGACAACAAAATGGCCAGATTAGCCAAGGATGG	69	+	chr3L	16341682	16341751	16341682..16341751	CG13037-RA,	FBgn0260460,	mRpS34,	1	.
CG31061-RA	CGTGGCACTCGGACCCTACCTCCACTGGACAAATAAAGTGCTCACCGAAATCATTCTGATAATGCTACA	69	+	chr3R	23372267	23372336	23372267..23372336	CG31061-RA,	FBgn0046885,	Gr98d,	1	.
CG1591-RA	AATGCCTAACGACACTGTGGTAAAGGTGCAGGAGTACAAGGACTCGTTGATCCTCAAGGCAGAGCTGCT	69	+	chrX	13106620	13106689	13106620..13106689	CG1591-RA,	FBgn0029133,	REG,	1	.
CG40169-RB	TGCCTATATTTGGCCTAGTTAAACTCAATTATTATGCAAAGTCAACAATGTCTATTTGTGCCACCAAAA	69	.	.	.	.	.				0	no match
CG15462-RA	GGGTGAGGATGGAGTGAGTGGTGTGCAAATTTTCACAGGTGCAGACTCCGAGGAATCTCAGCGAGAGAT	69	-	chrX	20238867	20238936	20238867..20238936				0	no match
CG7331-RA	ACTTAGTTGGCACTGTCAGGAAGTTGAAGAGAGCAGCTAGTGTTTTGTTTTGTCTTTAATCGTTGGTCG	69	+	chr3R	4178319	4178388	4178319..4178388	CG7331-RA,	FBgn0261108,	Atg13,	1	.
CG40212-RA	ACAAGAGCACTGACGAAACTCAGAAACAGGAGCATGAGAAGGAGGAGCCCCAGGTGTTGGAGACG	65	+	chr2RHet	449739	449804	449739..449804				0	no match
CG2453-RA	CAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAACTCCAAAGGAATGGCAAGTG	65	-	chrX	13088278	13088343	13088278..13088343	CG2453-RA,	FBgn0030460,	CG2453,	1	.
CG2924-RA	TAACGCATGCCAGCCTACACCAATCAACACCACTCCTCACACCGCCAAAATTAGCCTGTCCACAT	65	-	chrX	2159716	2159781	2159716..2159781	CG2924-RA,CG2924-RB,	FBgn0023528,	CG2924,	1	.
CG31056-RA	GCAGCCTCCGCACGAATAAGGGGACACACTATCAAAGGATGACGAGGATGTCCAAGTGAATCACCAGCT	69	+	chr3R	23520652	23520721	23520652..23520721	CG31056-RA,	FBgn0013745,	Acp98AB,	1	.
CG11641-RA	TGTGCAGTTTTAGGCCAAATTTTATCACATTGATGTGCCATTCCAAAAAGAAAACAAAGCAAACCAGTT	69	+	chr2R	4283381	4283450	4283381..4283450	CG42698-RA,CG42698-RC,	FBgn0261588,	pdm3,	1	.
CG4276-RD	CTCGCTCGCAGGAGTGTGCAAACCAGAACTAACCTTAAGACTAACCTAAGTGGAGCTCCAGACGGGAG	68	-	chr2L	861959	862027	861959..862027	CG4276-RA,CG4276-RD,CG4276-RC,	FBgn0029095,	aru,	1	.
CG9089-RA	AGTGGCTGGAAAGGATAAGACCAACGATACCTCCAAAGGATCTCCCTCGAAGGCTAAGTCCAATGGCCA	69	-	chrX	16833911	16833980	16833911..16833980	CG9089-RA,	FBgn0030805,	wus,	1	.
CG6308-RA	AACAGACGGAGAAGTACCAGCCAATTAGACTGATCCTGGCCAACAGTGACTCTACCTCCGAGCGC	65	+	chrX	15366381	15366446	15366381..15366446	CG6308-RA,	FBgn0030645,	CG6308,	1	.
CG40448-RA	GACAATTAGCCCGACCATGTGACGTTCCTGACAAGGGTTTACTTTGCGACCTCCTATGGTCAGACCCCG	69	+	chrYHet	291408	291477	291408..291477	CG40448-RA,	FBgn0046698,	Pp1-Y2,	1	.
CG3407-RA	GCGTGAAACCCTTTAAATGCGACAAGTGCGAGTTTCAGTTTCGGCAGTGGGGTGACCTGAAGTACCACA	69	-	chr2L	3811430	3811499	3811430..3811499	CG3407-RA,	FBgn0031573,	CG3407,	1	.
CG3346-RA	CCGCCAAGTGAGCAGGTTGGCTCCACAGATTCAATTGGTGCGTCGATTTTTAGGGGATTTCAAATGGCA	69	+	chrX	4532681	4532750	4532681..4532750	CG3346-RA,	FBgn0025739,	pon,	1	.
CG31391-RA	GCCCATTCTGTGGATAGGAAAGCGTAAGTATAGGGGCACTGATCCTCACATCGCTCAGATCGAGTTGGA	69	-	chr3R	6529788	6529857	6529788..6529857	CG31391-RA,	FBgn0051391,	CG31391,	1	.
CG1958-RA	CGCAGAAAATCACTGTAATGCCCATACATCGCGAGAGCCAGGTGAAAAGTACTCCCTCGTACGGCGACA	69	+	chrX	7161521	7161590	7161521..7161590	CG1958-RA,	FBgn0029940,	CG1958,	1	.
CG32096-RB	CATCATGAGATCACCGATTTGTAAATGTCGATTGTTGTGTATTGTTGTACTCGTCGTATACCCTTCGAA	69	-	chr3L	12001552	12001621	12001552..12001621	CG32096-RB,CG32096-RD,CG32096-RE,CG32096-RA,CG32096-RC,	FBgn0041096,	rols,	1	.
CG15634-RA	CTGAACCGGAGGCCATGAATGATGACACTTGGATGCTGGTGCAATACAGTCCCGAACCGGAGATG	65	+	chr2L	4688246	4688311	4688246..4688311	CG15634-RA,	FBgn0031621,	CG15634,	1	.
CG40374-RA	GAGCTGTACACAGGCAGCGACCACGAGAATCCTCTAATCACGAGGTGTCCAAAGCAAGCCACTCG	65	-	chrU	1364392	1364714	1364392..1364430,1364687..1364714				0	no match
CG8613-RA	GCCACCGGGTAATGTTCCAGCCTACAGCGATCCCCATGGTCATCTCACTGGCAAGAACATTCTAATCGT	69	+	chr2R	10241578	10241647	10241578..10241647	CG8613-RA,	FBgn0033924,	CG8613,	1	.
CG17490-RC	GGCAGGTCAGCAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCGTCT	69	+	chr2L	22432805	22432874	22432805..22432874	CG17490-RA,CG17490-RD,CG17490-RC,CG17490-RE,	FBgn0040009,	CG17490,	1	.
CG15911-RA	GCCAAACAAACCGAGAGCACCATGAGCACCGACTGCCGGCACAAAATTGAATTGATAGCAGCATGA	66	-	chrX	17926271	17926337	17926271..17926337				0	no match
CG5538-RA	TGTGGCAGTCCCTTATGCCTGCAATCCACAATGAGTCAATCTCTGGCGCACGATTCAGCTCCAACTAC	68	+	chr3R	8274427	8274495	8274427..8274495	CG5538-RA,	FBgn0038052,	CG5538,	1	.
CG7507-RA	GCAAGTGCTCAAGCGTACTGTGGAGAACATCAAGGATCCGTTGTACCGATACTTCGAGCGCGAGGT	66	-	chr3L	4808425	4808491	4808425..4808491	CG7507-RC,CG7507-RA,	FBgn0261797,	Dhc64C,	1	.
CG14088-RA	TGTTGCGGTGCTCACAAGTCTACTGATTTTCTTATCGGGAACAGGATCGGCGCAATTCTTGGGGAACAT	69	-	chr3L	19263653	19263722	19263653..19263722	CG14088-RA,	FBgn0036858,	CG14088,	1	.
CG1623-RB	GGTCCCCAAAGCGTCATTTCGGGACTAGCTAGACCAAACTACGTGTATTGCAATAGACACCATTTGCTT	69	-	chr2R	5715636	5715705	5715636..5715705	CG1623-RB,CG1623-RD,CG1623-RE,CG1623-RF,	FBgn0033448,	hebe,	1	.
CG15345-RA	AGGAAACGTTTGATCCACACTTCCACTTAGCCGCTAGCAATGAGCAGCAATTCCAAGTCGAGATGGAGG	69	-	chrX	8291844	8291913	8291844..8291913	CG15345-RA,	FBgn0040928,	CG15345,	1	.
CG8722-RA	TTTTGTTATTTTTCGCTCGATTTTTTATTCGTATTTCACGCGTAATTCGGACCACTAACTCGGTGTGAC	69	+	chr2R	3877220	3877289	3877220..3877289	CG8722-RA,	FBgn0033247,	Nup44A,	1	.
CG32171-RA	AGTCGAACGCGATGAAAGTTTCCTAACCGCTGGTTTCAGTTCTAAACAGTTCTATTGTATTAAAAACCA	69	+	chr3L	16915219	16915288	16915219..16915288	CG42679-RA,CG42679-RE,CG32171-RF,CG32171-RG,CG32171-RH,CG32171-RB,CG32171-RD,CG32171-RC,CG32171-RI,CG42679-RJ,CG42679-RM,	FBgn0261565,	Lmpt,	1	.
CG13196-RA	GGTGGAGAGATCCTTAACACGGTTCAGTTGGTCAGTTCGAGGGGCTGTCTAAATCCCGCCATGCAG	66	-	chr2R	7572434	7572500	7572434..7572500	CG13196-RA,	FBgn0033645,	CG13196,	1	.
CG17397-RB	GGCTCGAGATCGAAAACCAGGGAACTGCAAGAGACCTAGAGGAAGTAGTGCAAAAAGGCGAACTTTTGC	69	-	chr3LHet	600757	600826	600757..600826	CG17397-RB,CG17397-RA,	FBgn0040020,	MED21,	1	.
CG7289-RA	CCAGGAGCACATTGACGTTTGGACTGATTTGTGGGCCACTGGATTTACGATAAGCACATCCAAGGCGGA	69	+	chr2L	1983357	1983426	1983357..1983426	CG7289-RA,	FBgn0031379,	CG7289,	1	.
CG17438-RA	GGCGGGACAACGACAGCAAGTATGCCGACTACTTTCTCAAATACACCCCCCCGAAGCAGAAGGAAAAAG	69	-	chrX	9153574	9153643	9153574..9153643	CR17438-RB,	FBgn0030116,	CR17438,	1	.
CG41141-RA	GCGCCGCTTGTATCTTGGCAGAGGTTCTCGAGTTTCAATCGGCTGGTAAGAACGACAGCATGGATCCTA	69	-	chr3LHet	555268	555337	555268..555337				0	no match
CG32052-RA	GTGTCATGATGCGGAAATAGATAGTAATGGATATACGTAGGAATGGGTGAGCTAACAAAGGTCCAGCGA	69	+	chr3L	9801469	9801538	9801469..9801538	CG32052-RB,	FBgn0044328,	CG32052,	1	.
CG9813-RB	GGCGCGGGTTAATCTGGCCAACCCATTTTACAGGCTTCCAATACACGCCCCTAGCCAATAAAGACACAT	69	-	chr3R	9199610	9199679	9199610..9199679	CG9813-RE,CG9813-RF,CG9813-RB,CG9813-RA,CG9813-RC,CG9813-RD,	FBgn0038143,	CG9813,	1	.
CG2060-RA	ACCTGGGTCTCGTGATGCTGGGTTATAACGAAAAGGTGTTCAAAGATCCCCACAAGTTCCGACCTGAGC	69	+	chr2R	4334144	4334213	4334144..4334213	CG2060-RA,	FBgn0014469,	Cyp4e2,	1	.
CG9346-RA	ACGGCTAAGTTGCCTGGCTTCATACCCTCAAAGTGGGAGACAGTTGATCCCCAGCAAGTAGAAGC	65	+	chr2R	16902317	16902382	16902317..16902382	CG9346-RA,	FBgn0034572,	CG9346,	1	.
CG9541-RA	AGTGTCGGTCGTCTTTTGCGCAATATCACGGACTCTGCACCACGTGCCAATACGGAAAGCTTCGC	65	-	chr2L	8971654	8971719	8971654..8971719	CG9541-RA,CG9541-RB,	FBgn0032083,	CG9541,	1	.
CG3573-RA	ACCAGCCACAGATCAATGTCGAGAAGACGGTCATCGATTTCGGGACTGTGCGATTTAACGAGCCGAGC	68	+	chrX	1819975	1820043	1819975..1820043	CG3573-RA,	FBgn0023508,	CG3573,	1	.
CG15744-RA	GAGAGCGATCTGAACTACCAAAACTCGGAGATAAGCATCCGAAGCCATGGACTGTATGCTCCCCAGGCG	69	+	chrX	13187413	13187482	13187413..13187482	CG15744-RA,	FBgn0030466,	CG15744,	1	.
CG14456-RA	TCCCTGGCCGAGAAAATGATGAGACCCAAGTTCAAGGACATCAAGTTCTGGAGCGACGAGAAGTTC	66	+	chr3L	22680538	22680666	22680538..22680550,22680612..22680666	CG14456-RA,CG14456-RB,	FBgn0037176,	CG14456,	1	.
CG33298-RB	TGCGGAGAGTGATGTAGGAATCTGGGAGTTTGGTACGACGATAACGGCATCCTGTCTCTTCGCCAACCT	69	+	chr2L	9518976	9519045	9518976..9519045	CG33298-RA,CG33298-RB,CG33298-RC,CG33298-RD,	FBgn0032120,	CG33298,	1	.
CG31632-RA	TGGCAAACCAAAATCCAAATCCAAATCAACCGCAACCATTGTGCAATAGACGGAAGTGAAAGGCTTCGC	69	+	chr2L	6838168	6838237	6838168..6838237	CG31632-RA,	FBgn0051632,	sens-2,	1	.
CG3474-RA	TGTGAAGTCACAGAGTGAGTCACGACATGGCCACACGGTTACCGGACACTATGAGTTGATCGATGCCG	68	-	chr2L	14424747	14424815	14424747..14424815	CG3474-RA,	FBgn0028871,	Cpr35B,	1	.
CG3129-RA	CGCGTCTACGTGTTACTGTTGATTTCGAATGTTATGCGTGCTTTTGTCAAATTTATATCGTGTATTTAT	69	-	chrX	5564900	5564969	5564900..5564969	CG3129-RA,	FBgn0015794,	Rab-RP4,	1	.
CG15247-RA	TCTCGCAGCTGCAGTAATATTGCTCTGCCCAGGATCTTGTTATACGATCACACGGGCAATCTGCT	65	-	chrX	9769637	9769702	9769637..9769702	CG15247-RA,	FBgn0030156,	CG15247,	1	.
CG15210-RA	GTTGCTCAAAGGATTTGGATGACAAACGCTCGTGGAGTCCCGAGGAGACCAAGAATGGCAGCACC	65	+	chrX	10733429	10733551	10733429..10733488,10733545..10733551	CG15210-RA,	FBgn0040850,	CG15210,	1	.
CG30374-RA	GCCCATCTGCTTACCTCTTCAAGGGTCGTCCATTGAGCAGACACACTGTGTGATTTCCGGATGGG	65	-	chr2R	4045171	4045236	4045171..4045236	CR30374-RB,	FBgn0050374,	CR30374,	1	.
CG40211-RA	AGCGGAACAAGGAAAGAGAGTCTTTCGTCTTGCGCAACTTACGAAGGGAGTCAAAGACCTCGGCAATGT	69	+	chr2RHet	445379	445448	445379..445448				0	no match
CG11430-RA	AAGTGGATCGAACGAAAAAGACAGCGGCTCAGGGTAAGCTTCAGATTATTTTTAGTGAAACACACATAT	69	+	chr2R	13747320	13747389	13747320..13747389	CG11430-RB,CG11430-RA,CG11430-RD,CG11430-RE,	FBgn0041585,	olf186-F,	1	.
CG5637-RA	ACCCACTGGCTGAACAACTACCGGGAGCATCTGAACAACGTGTGGCGAAACATGTCGTATATACCA	66	+	chr3R	14984458	14984524	14984458..14984524	CG5637-RA,	FBgn0002962,	nos,	1	.
CG3354-RA	AGCCAGCATACAAACAGTTAGTACACTACCTTTGAACGAGGAACAACTAAAATATTTCGATAAAATTGA	69	-	chr3L	20811073	20811142	20811073..20811142	CG3354-RA,	FBgn0086915,	Mst77F,	1	.
CG3075-RA	TAAACCTAGCACTTAGAGAGAATAATGGGAAATCGAGTGTATTAGTGTATGTATGTGACGGGTGACGGA	69	-	chrX	6712334	6712403	6712334..6712403	CG3075-RA,	FBgn0029905,	Nf-YC,	1	.
CG31524-RA	TGGTGAATATGGATGACCTTCTGAACATGGAAGACGATCTGGTCTCCAAATTGGAAGGCTACGCTGAAA	69	-	chr3R	26339905	26339974	26339905..26339974	CG31524-RA,CG31524-RB,	FBgn0051524,	CG31524,	1	.
CG15727-RA	TGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAACCATTACGATGCCAATGCCTATGGTGCA	67	-	chrX	12522660	12522727	12522660..12522727	CG15727-RA,	FBgn0030410,	Aven,	1	.
CG15427-RE	GCGCAATCGCATCAAGATCTCCGGGGGCAATATCACCATTGAGAATCTGAGGAGGGAGGACTTTGGCTA	69	+	chr2L	4308001	4308070	4308001..4308070	CG15427-RE,CG15427-RC,CG15427-RD,CG15427-RF,CG15427-RG,	FBgn0010473,	tutl,	1	.
CG31015-RA	GTGCTCTACCACGATGTGCTCTCACCCAAGGAAATCAAAGAGCTCCAAGGTATGGCCACTCCTGGTCTA	69	-	chr3R	26472848	26472917	26472848..26472917	CG31015-RA,	FBgn0051015,	PH4alphaPV,	1	.
CG6447-RA	CTCCAGAAGGAGTTCTTCACCTACTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGA	65	-	chr3R	22450826	22450891	22450826..22450891	CG6447-RB,CG6447-RA,	FBgn0039437,	TwdlL,	1	.
CG11808-RA	GCAAAAGCAGAACCAGGGATCATCACAAATCGCGGTCTATTTCGCAGAGGAAAACCAGGGGTCCAAGTT	69	+	chr2R	11104060	11104129	11104060..11104129	CG11808-RA,	FBgn0034000,	CG11808,	1	.
CG3838-RA	TGAAGTCCAGCCGTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACCAGATGTCCCAG	65	+	chr2L	9572087	9572152	9572087..9572152	CG3838-RA,CG3838-RB,	FBgn0032130,	CG3838,	1	.
CG17360-RA	GCAGGCGGATAACAATGCAGCCGTTCAGGGAAATAAAGAAACCATGCTTGAGGAGGATATGCTCAGTGT	69	-	chr3R	7608172	7608241	7608172..7608241	CG17360-RA,	FBgn0037949,	CG17360,	1	.
CG12172-RA	TTGGGGTGTGGATATCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAATCTCTTCGCC	65	+	chr2R	3035324	3035389	3035324..3035389	CG12172-RA,	FBgn0024294,	Spn43Aa,	1	.
CG6042-RA	TGAGAGATCCCGATACTCTTGAGGCTCCCGACGACTTCATAGACACCATCAACCGCTGGACCTTGGAAT	69	+	chr3R	14961725	14961794	14961725..14961794	CG6042-RA,	FBgn0038681,	Cyp12a4,	1	.
CG9747-RA	ATAGACGACAACTACAAAATATGCTCTCAGTCCGAGACAAATAAAAAGAAAATAAATATTTGCAAATAA	69	-	chr3R	26011161	26011230	26011161..26011230	CG9747-RA,	FBgn0039754,	CG9747,	1	.
CG9703-RA	GCTCTGCTGAACAACGTCTTTGCGGTGCACATTGATATGTGGAAGCTGTGCAACATCTTTAAGCGACCA	69	-	chrX	16574743	16574812	16574743..16574812	CG9703-RA,CG9703-RB,CG13011-RA	FBgn0000152,FBgn0261245	Axs,sing	2	.
CG3213-RA	ACAGTGCGTCTCCCTAGAGAAGCTGAACATGAACAACAAACGAATCGAACAGCAGATCAACACGGAGGT	69	-	chr2L	3518030	3518099	3518030..3518099	CG3213-RA,	FBgn0031545,	CG3213,	1	.
CG6028-RA	TGTCGTGCAGTCGGAGATTGTTGGATTGGGCAAGCTGTGCAACAAGATTGTGGCTCCCTAAGATTGTCA	69	-	chr3R	17850079	17850148	17850079..17850148	CG6028-RA,	FBgn0038924,	CG6028,	1	.
CG30479-RA	CGGGGTCCCGGAATCGCCTACGGACCACCGCCACCTCGAGTGAATGTCGGCATCAATATCGGCGG	65	-	chr2R	10562429	10562494	10562429..10562494	CG30479-RA,	FBgn0050479,	CG30479,	1	.
CG12269-RA	ACATGAAGAGCGACGAGATCATCGAGAAGATACGCAACAAGTTGAAGGAATCGGATCCTGCCCGGC	66	-	chr3R	14804431	14804497	14804431..14804497	CG12269-RA,CG12269-RB,	FBgn0038665,	CG12269,	1	.
CG31406-RA	ACGTTAGCTTTGAACCGAAAATGGTGGTTACTCGCAGTGCAGCTACGAAGAAGCAGAACCAAGTGCTGA	69	+	chr3R	6174621	6174690	6174621..6174690	CG31406-RA,CG31406-RB,	FBgn0051406,	CG31406,	1	.
CG7366-RA	CACGCCCGAGTTCGAGAGCATTAAGCGGTCTAACCAGGATCTGCTTAAGGAAATCGACTCGCTGCACTG	69	-	chr3L	8194950	8195019	8194950..8195019	CG7366-RA,	FBgn0035855,	CG7366,	1	.
CG7339-RA	GTCCTTCTTAACGTGGGATTATGCATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTG	69	+	chr3L	11642108	11642177	11642108..11642177	CG7339-RA,	FBgn0036188,	CG7339,	1	.
CG2161-RA	TCAGAGCAATCGGAGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAACTC	65	-	chr3R	1434653	1434718	1434653..1434718	CG2161-RA,CG2161-RB,	FBgn0017550,	Rga,	1	.
CG7722-RA	GGAAGTGGCCAAACAACATGCGGAATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGC	66	-	chr2R	6828809	6828875	6828809..6828875	CG7722-RA,CG7722-RB,	FBgn0033574,	Spn47C,	1	.
CG6011-RA	TCCAGGGTCTCAAACGACTGATGACCAAGTGCCAAGAGTACTTTCCCACCGATCCCTCCAAGTGC	65	-	chr3R	14855925	14855990	14855925..14855990	CG6011-RA,	FBgn0027784,	Prp18,	1	.
CG3992-RA	ATCGAGCACATTATCGTCCCTGAGTCACAGCAACATTATTAGTCTGCAGAATCCGTATCACCAGGCCG	68	+	chr3R	11828816	11828884	11828816..11828884	CG3992-RB,CG3992-RA,CG3992-RD,CG3992-RE,	FBgn0003507,	srp,	1	.
CG11419-RA	GGGCAAGCACTATCCTCTGGAACTGTTTGGCAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCCACCAT	69	-	chr2R	13404974	13405043	13404974..13405043	CG11419-RA,	FBgn0034231,	Apc10,	1	.
CG40383-RA	CTAGTGTCTTTGGTTTTACTCTCAACACACTCTTTTTCAGTTTTTTTCCTTTTTCTAATAAAGAAACTT	69	+	chr3LHet	1720342	1720411	1720342..1720411				0	no match
CG40306-RA	GCTGGCTCCAGTTTTCCACTTCACATGATGTTAACATTAGCATTAACGTGTAAGTTTATGGCGAAGGCT	69	-	chrX	22383602	22383671	22383602..22383671	CG12473-RE,CG12473-RF,CG12500-RC,CG12500-RD,	FBgn0016975,FBgn0016976,	stnB,stnA,	2	.
CG13021-RB	GCTGAACAAAGGTTGGCTAGCGCACTTGAGGGCCAATTGAGTGTGGCATAATTTGATGGTGTGCGC	66	+	chrX	3409962	3410028	3409962..3410028	CG13021-RA,CG13021-RB,CG13021-RC,	FBgn0029669,	CG13021,	1	.
CG10353-RB	GCCGGAAGATCCGCATCCCTATAAACGTCCCATGATATATTGGAAGATACTGACGGGTCGGCTGGCCTT	69	-	chrX	11773098	11773167	11773098..11773167	CG10353-RC,CG10353-RD,CG10353-RE,	FBgn0030349,	CG10353,	1	.
CG6333-RA	TACGAGTTCCAGCCTGAAGCGCATAGGAAGTCCGATCTCCGAGGAAGAATTTGGTGTCCTGGTGC	65	-	chr3L	17473742	17473807	17473742..17473807	CG6333-RA,CG6333-RB,	FBgn0036731,	CG6333,	1	.
CG9666-RA	ATTCGCACATTTGGTTCAGTTCGAATACCGCTACTATTTCCGCCACACTACAGTACTCGCCAGTGTGAC	69	+	chr3L	19257437	19257506	19257437..19257506	CG42374-RA,CG9666-RA,	FBgn0259720,FBgn0036856,	CG42374,CG9666,	2	.
CG11658-RA	GGACGTGGTTTCAGTTCAGTTGTTTGCCAACCAGTTGTATTACCACATCAGCAATCTGTGCAGGACCGA	69	-	chr3L	11693470	11693539	11693470..11693539	CG11658-RA,CG11658-RB,CG11658-RC,CG11658-RD,CG11658-RE,	FBgn0036196,	CG11658,	1	.
CG40367-RA	CGTCTTGACGTGGTATCTTGATCCTTCACCTAAGCCTCTCCGAACTCCTCTCGTCAACCTGCGCCTTCT	69	+	chrU	2085340	2085409	2085340..2085409				0	no match
CG1969-RB	GCACCTTCATCAAGTAGCCCTAAGATTGAAACACTCGCATAACTGTTAAACTGTTATTAACACTAATCA	69	+	chr3R	25567514	25567583	25567514..25567583	CG1969-RB,CG1969-RA,CG1969-RC,CG1969-RD,	FBgn0039690,	CG1969,	1	.
CG14577-RA	TGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAACTTTATATCCCTGGTGGTCGTCACGC	67	+	chr3L	21629099	21629166	21629099..21629166	CG14577-RA,	FBgn0037110,	ORMDL,	1	.
CG15393-RA	GCAGGGGTACTCGCATTCTAGGCACCCATTAACACCAACTTGGCAACGCTTTGATGGACAGCTGAC	66	-	chr2L	2489982	2490048	2489982..2490048	CG15393-RA,	FBgn0031429,	CG15393,	1	.
CG13489-RA	GGTCCTGGATTGCTGATTTTTCCCGGCACCGGTCAAAGACATCAGCATAATCCAAATGGCAGCACG	66	+	chr2R	17851854	17851920	17851854..17851920	CG34369-RA,	FBgn0085398,	CG34369,	1	.
CG15002-RB	TCTTGTGGCGATTTCCAGGACTGACGACTAGCCTGGTGTAGCCTACGATTGTTTCCAGGGGTTCC	65	-	chr3L	4161878	4161943	4161878..4161943	CG15002-RB,	FBgn0011653,	mas,	1	.
CG1968-RA	GCAGTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGATGACATTGCATCAGGAGGGCG	65	+	chr2R	5174949	5175014	5174949..5175014	CG1968-RA,	FBgn0033401,	CG1968,	1	.
CG32043-RA	CCCAACCTGTCCTAGATTATAGTTTTCCGTTGATGTGCATCGTCATATTAGTTTTTTAGTGTGCTCCTC	69	+	chr3L	9465197	9465266	9465197..9465266	CG32043-RB,CG32043-RA,CG32043-RC,	FBgn0052043,	CG32043,	1	.
CG2075-RA	GGACTTGGCCCGAATGAATGAGGATTTCGAGACATTCAAGGAGATTGGTTCTTCAAGTAGTCGTCGCGA	69	-	chr3L	3025165	3025234	3025165..3025234	CG2075-RA,	FBgn0004372,	aly,	1	.
CG6378-RA	CGAAGATCTGCTGGATGAGGACCTCGACCTGTCCGACATCGATGAGAACGAAGAGGAGTTCCTGCG	66	-	chr3R	22695936	22696002	22695936..22696002	CG6378-RA,	FBgn0026562,	BM-40-SPARC,	1	.
CG40450-RB	TCCACCGGTGGGCCACTATCGATAGCTCCACTATCATACGCAGCACAAGGAATCACCAACAGCAG	65	-	chrU	2072782	2072847	2072782..2072847				0	no match
CG9579-RA	TCGCAAAAAAGTCCCAGGAGAAAGACTGATTCGTGTGAAGTCGTCTACTGAAGAGCCACAAGGAACCCA	69	-	chrX	20067433	20067502	20067433..20067502	CG9579-RA,CG9579-RB,	FBgn0000084,	AnnX,	1	.
CG11600-RA	CCCCGCCGTTTTCATGAAGCACGCAAGGAACAAGCTAATGAAAATGTTTGGGAACATCATTATGAGCAT	69	+	chr3R	8462945	8463014	8462945..8463014	CG11600-RB,	FBgn0038068,	CG11600,	1	.
CG6138-RA	AAGCCATGGAGGATGACTTGGAGTTTCTTATCAACGCCCTGTCGGTGCCAAACACTCCACTCACC	65	+	chr2L	10567377	10567442	10567377..10567442	CG6138-RA,	FBgn0032268,	CG6138,	1	.
CG9149-RA	CCAGGCCATCCGCTCGGGAGACGCACAGATTGTTGTGGCAGGAGGTCAGGAGAGCATGTCCCTGGCTCC	69	+	chr3L	1303565	1303634	1303565..1303634	CG9149-RA,	FBgn0035203,	CG9149,	1	.
CG15366-RA	ACCCTGAAAGCAAGCAATCTGGCTACCGTTTATGAGGTGGATATGTTTTCAGGTCATGTGAGCGGCACT	69	-	chrX	8967140	8967209	8967140..8967209	CG15366-RA,	FBgn0030080,	CG15366,	1	.
CG1543-RB	AGTTTGACTGTAGTCGCTTTGTATTTTACCCTTTATCTGCATGGTCATTAGCATTATCAACGCGT	65	+	chrX	7920292	7920357	7920292..7920357	CG1543-RB,	FBgn0010329,	Tbh,	1	.
CG9614-RE	TCTTCAGTATGCCGCCCTAAGTCATGGAAAGCGATTCGGGGAGGATGACTATCTTCTGGTGCCCG	65	-	chr3L	19302586	19302651	19302586..19302651	CG9614-RL,CG9614-RE,	FBgn0003089,	pip,	1	.
CG31745-RA	ACGAGTATACATATGCACCTGGATCTGGAATGGGATTGAGGTTCACCCAGAATTGTCCGCAAAAGGTG	68	+	chr2L	17245985	17246053	17245985..17246053				0	no match
CG16978-RA	GGCAGTGGATACAACAGTGCCGAAGAGTTCATGAATGCAATGGACGAGCTGATCAGACGCTGGCAG	66	-	chr2L	13143408	13143474	13143408..13143474	CG16978-RB,	FBgn0040972,	CG16978,	1	.
CG31358-RA	GGAGCTGTGCTCAATCGCGGATAAGATTTATGAAATGTGTTCCGCCCCGATTTGTTCACTTTTTCCCGG	69	-	chr3R	7853954	7854023	7853954..7854023	CG31358-RA,CG42504-RA,CG42505-RA,	FBgn0051358,FBgn0260230,FBgn0260231,	CG31358,CG42504,CG42505,	3	.
CG1632-RA	TGTGTGTAGCAAAGCAAGTAAGGCAATTAAGCATATGTACTATGTAACTAACCTGCTCTAATGTTACTC	69	+	chrX	8166237	8166306	8166237..8166306	CG1632-RA,CG1632-RB,	FBgn0030027,	CG1632,	1	.
CG10488-RA	CCTTGGAATCAGCGGATGAGAACCGGCACATAGACTCCGATTATCTGGATGACGATGATGAGCCCAAGT	69	-	chr3L	12457550	12457619	12457550..12457619	CG10488-RA,CG10488-RB,	FBgn0000625,	eyg,	1	.
CG6071-RA	TGGGCGCTTGACTCAAAAAAGGTTCCAAGAACGATGACAGCCAGTCTTCTGAGCGCCGTTTTGAGATCC	69	-	chr3L	11636419	11636488	11636419..11636488	CG6071-RA,	FBgn0036186,	CG6071,	1	.
CG9498-RA	GTGAAGACTCCGGTGCAAACGATCGTGTTCAGTGACCTCACGGTAGAGGGATTCAAGGTGGCCTC	65	-	chr2L	6350445	6350510	6350445..6350510	CG9498-RA,	FBgn0031801,	CG9498,	1	.
CG15522-RA	ATAGCACCATGTTCCCACCCAGTTCTGAAGGACACATCCGAGTGTCTCGACGTGACTAGGCCAAG	65	+	chr3R	25753607	25753672	25753607..25753672	CG15522-RA,	FBgn0039723,	CG15522,	1	.
CG33228-RA	CGAAGTGGAACGGAAGCTCCTCTTTGGCGACAGGCTACCAGATAACTATAAACTGATTTACCGGGCCCC	69	-	chr2R	20556508	20556577	20556508..20556577	CG33228-RB,	FBgn0261373,	CG33228,	1	.
CG11825-RA	AAGAGGGAACAAGTTTTCTAACCTATTCAAAATGAGTTCCAATTCTCTATTCGAAACCGACGAAGATGT	69	-	chr2R	6308470	6308539	6308470..6308539	CG11825-RA,	FBgn0033519,	CG11825,	1	.
CG9376-RA	TTTCCTCGGAGAGCTGCTAAAAGTTGTTTTGGCTCGCTTCTACGGGAAGGTTGAGGATGGCGTCC	65	+	chr3L	19605805	19605870	19605805..19605870	CG9376-RA,	FBgn0036893,	CG9376,	1	.
CG11376-RA	ACAACTGTACCGACAAAACACCAAAACAAACTTCGGTTGTGCTTTCGCGAGTTTTCAAAGCGTTGTGCT	69	+	chr2L	101407	101476	101407..101476	CG11376-RA,	FBgn0031216,	CG11376,	1	.
CG15431-RA	GAGTCTGCCACACACACCCAGTACAGCAGCCTCAACACGGTAATCAGCATGGGTCGGTCCACGCC	65	-	chr2L	4406618	4406683	4406618..4406683	CG15431-RA,	FBgn0031602,	CG15431,	1	.
CG8661-RA	GCAGCTGCTTTGTTAAGACTCTGCGCAAGGTGTGGTCCCTAAAGAAGCAAGTGGACAATGCCATCAAGC	69	-	chrX	17177975	17178044	17177975..17178044	CG8661-RA,	FBgn0030837,	CG8661,	1	.
CG3966-RA	GAGATACCCACGGAGCAGTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGC	65	+	chr2L	878026	878091	878026..878091	CG3966-RA,	FBgn0002936,	ninaA,	1	.
CG15835-RA	GCTGTAGCTGTAGGGCAGACTGAATTTGTCCGTTCACATTTTAATTTAACAAGTGTCTGTTCCCACCGA	69	-	chr2R	3810470	3810539	3810470..3810539	CG15835-RA,	FBgn0033233,	Kdm4A,	1	.
CG9858-RA	ACCTGTTCCAGATGGCAGGTGACGAGACCGAGATGAATAGGGATGACTTGATGGTCACGGAACGGCTAT	69	-	chr2R	17504834	17504903	17504834..17504903	CG9858-RA,	FBgn0000326,	clt,	1	.
CG9799-RA	ACCAATCTGAACTTTGAGCTGGCTCAATCGTATCTAAGCGTCTTCTTGCGATCCCACGGTCTCGGGTTG	69	-	chr3R	9211563	9211632	9211563..9211632	CG9799-RA,	FBgn0038146,	CG9799,	1	.
CG3090-RA	GGGTGATACCTCCTCCAAGCCTAAGTACGAAGTTAAGATGGAGTCTGCTGAGCAGCTCAACTCCGCCGA	69	+	chr2R	19871509	19871578	19871509..19871578	CG3090-RA,CG3090-RB,	FBgn0005612,	Sox14,	1	.
CG41069-RA	GGGCCTTCGGATTCCGACCGAACCTATCTATCTCTCCCTAAGTACCACCGTTATTATTCTGATGGCGGT	69	+	chr3RHet	2309251	2309394	2309251..2309312,2309386..2309394				0	no match
CG4432-RB	CCCACCAATTTGTCCTTTTCTGCCCAACACTGTCGGACGCAAGGCCGTCACAGTTACAGTGGTTTTTG	68	+	chr3L	9338027	9338095	9338027..9338095	CG4432-RA,CG4432-RC,CG4432-RB,CG4432-RD,CG4432-RE,CG4432-RG,CG4432-RH,	FBgn0035976,	PGRP-LC,	1	.
CG40295-RA	TCATTCAAGAAGGTGCCATTCTAATAAGTGGAAATAATATTGTGAACGATTCGCATTTAAACTGGTCAT	69	+	chr3L	23774867	23774936	23774867..23774936				0	no match
CG8626-RA	GCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCTCGTACAAACCTTTACCACCGGA	69	-	chr2R	12635694	12635763	12635694..12635763	CG8626-RA,	FBgn0034152,	Acp53C14a,	1	.
CG12199-RB	CGACACCGTCTATGTGGCCAATCACTCGCGCGACGAAGAAGCCGTCTCAGTGGCCATGTCGGATA	65	.	.	.	.	.	CG12199-RB,CG12199-RA,	FBgn0031016,	kek5,	1	.
CG2216-RA	CTCCCTGGCTGTTCCTGAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCA	65	-	chr3R	26212252	26212317	26212252..26212317	CG2216-RA,CG2216-RB,CG2216-RC,CG2216-RD,CG2216-RE,CG2216-RF,CG2216-RG,	FBgn0015222,	Fer1HCH,	1	.
CG13192-RA	TGTGATGGAATTGGCCCAAGATGCTACGTCTGTGGACTACGATCCAGTTACGAATCGTGGCATTGTGGG	69	+	chr2R	7713842	7713911	7713842..7713911	CG13192-RA,	FBgn0033653,	CG13192,	1	.
CG30263-RA	AGAAGCTACACGTGGACCTGGTGGAGTACTCGTCCAAGATGAAGGGAGCTATTCCCGTACTGCCG	65	+	chr2R	17571767	17571832	17571767..17571832	CG30263-RB,	FBgn0050263,	CG30263,	1	.
CG9007-RA	GTACAGAACTTGGCAAATAATACAAACTGTAATTGTTAGAGAGACCAGCGAAAACAAAATCCGGAACTA	69	+	chr3L	14011885	14011954	14011885..14011954	CG9007-RA,	FBgn0036398,	CG9007,	1	.
CG9614-RD	CCCCCAAGGCCGAGATTGACGTGTTGTTTTTCAATCGGGTTCCGAAGACAGGAAGTATGCAGCTGATTG	69	-	chr3L	19299509	19299578	19299509..19299578	CG9614-RD,	FBgn0003089,	pip,	1	.
CG2889-RA	CGGCCGACGTTTAAACCTGACCCCTCACAATTGTGTTTAATCATTATACGTATAATTAAACTGTA	65	+	chrX	10371170	10371235	10371170..10371235	CG2889-RA,CG2889-RB,	FBgn0030206,	CG2889,	1	.
CG9097-RA	GCGGAAAAGCCCACTGAAATCGGGAAAATGGCACTGGTTTCCGCAAACGAAGCTTGGAATGCCCTATAT	69	-	chr3L	1079144	1079213	1079144..1079213	CG9097-RA,	FBgn0004870,	bab1,	1	.
CG31674-RA	CCTCCAAAAAATCGGCCTGAAATTCTAGAAAAGATCAGGGGGGCTCATGCCGTTATTTGGGGTGGTCGG	69	+	chr2L	20831585	20831654	20831585..20831654	CG31674-RA,	FBgn0051674,	CG31674,	1	.
CG6432-RA	ATCTTCTCGGTACCTACCTCCTTCCGTGTTATCCGTCGTGCTGATCCGGACATCAGCTATGGGCG	65	+	chr3R	20164670	20164735	20164670..20164735	CG6432-RA,	FBgn0039184,	CG6432,	1	.
CG9619-RA	AATGTCCACAAATCCAAATGACTTAGACTGAAGCGTGAGTATGCAAAAAGTGTTATGAGATCTGCCCAA	69	-	chr3L	19274577	19274646	19274577..19274646	CG9619-RA,	FBgn0036862,	CG9619,	1	.
CG9876-RA	GGCGCGGCTAGCTTTAATGGGCCCCATGAGGTTACTTCATGCATATGTATTTCAATTAGCCAAATTGCA	69	-	chr2R	18977811	18977880	18977811..18977880	CG9876-RA,	FBgn0034821,	CG9876,	1	.
CG17054-RC	TCACGGCGTCCAACCTGAACACTTGACCAAGTTCTTCCTCGAAATGACAGTGCAGGAGATGAGCACG	67	+	chr2R	9023530	9023597	9023530..9023597	CG17054-RB,CG34438-RG,	FBgn0259876,	Cap-G,	1	.
CG14216-RA	TGTGTTCACTAAGGATTGGAATAAAAGTGCACGCCAATTTATGCCGGTTTCTTGTTGACGGCCTGTGTC	69	+	chrX	19560205	19560274	19560205..19560274	CG14216-RA,	FBgn0031054,	CG14216,	1	.
CG15136-RA	GTTATCTACGTACACCCGGTGGAGTACGGCAACCTCGGAGGACATATGCTACGAGCCCCGTTACG	65	.	.	.	.	.	CG15136-RA,	FBgn0032625,	CG15136,	1	.
CG4971-RA	CCATTCCAAAGATGCTCCATCTCATCGCACTTCTGCTTTCCGTTTTAGGCTACCGAGAGAGTGCGTTC	68	+	chr2L	7374807	7374875	7374807..7374875				0	no match
CG11791-RA	TCAGCACCTGCCAAACAAACCCAGAGCGTTACGTTCGTGAGGACCAGTAATGCACCAGCTGTTTG	65	+	chr3R	20877116	20877181	20877116..20877181	CG11791-RB,CG11791-RA,CG11791-RC,	FBgn0039266,	CG11791,	1	.
CG8674-RA	ACCTCTCCAAGTTGGACATGGTCAACTACCTTCTCAACTTCATCGCCACAGACACGGTGCTCTTCCAGT	69	+	chr2L	21261645	21261714	21261645..21261714	CG8674-RA,	FBgn0021856,	l(2)k14505,	1	.
CG1158-RA	GCGTGGATCGACGATTGCATACCAATTTATAAAAGATTGCTTTGATTGTTCGAATCTGATACTGGCGGC	69	+	chr3R	1126757	1126826	1126757..1126826	CG1158-RA,	FBgn0037310,	Tim17b1,	1	.
CG11926-RA	ACGAACTGTACGCCATATTCGAGCCGGTTGTGGACAAAGCCACTGTGATCAAGTACGTGGACAAGCTGA	69	+	chr2L	4852327	4852396	4852327..4852396	CG11926-RA,	FBgn0031640,	CG11926,	1	.
CG3894-RA	TTTGGTTCTAGTTACCAATACACTCTTTACCTGGACGACCTATGTTGTAGATCATAATCCTCGCCATC	68	+	chr2R	20654035	20654103	20654035..20654103	CG3894-RC,	FBgn0035059,	CG3894,	1	.
CG33153-RA	CCGCCATTGTCTTGTCATCGTCATTGTCATTCCCAGATCGCAGGACTGGTGGACTGTTCGATTTGGGG	68	-	chr2R	11678740	11678808	11678740..11678808				0	no match
CG31348-RA	ACGAGCAGTTTGCCTATAACATCGCAATTTGTGGATGCCTCGTTGACTTCGCTATCATTAACAGCCACA	69	-	chr3R	8347779	8347848	8347779..8347848	CG42244-RF,CG42244-RG,CG42244-RJ,CG42244-RK,	FBgn0250910,	Octbeta3R,	1	.
CG14210-RA	GTATTTGTGTTGTTTGCATTTGATTTCATATTAGACTAAACCGAACGCAAAATGAGTGAATCCGCACCG	69	+	chrX	19510257	19510326	19510257..19510326	CG14210-RA,	FBgn0031040,	CG14210,	1	.
CG15472-RA	AGTGGCCTTCAACGGAGAACGCTGTACCCTGGTCTTTGATGTTTCTCAGCTGATTGGAACGCAGACCAT	69	-	chrX	4663838	4663907	4663838..4663907	CG15472-RA,	FBgn0029724,	CG15472,	1	.
CG33340-RA	GGCACTGAGTGTTAATCCCTCCCGAGTACTGTTCCGTCCAATTTTTGGTGCGGTTAACAGCTGTGTGCG	69	+	chr3R	20188997	20189066	20188997..20189066	CG33340-RA,	FBgn0053340,	CG33340,	1	.
CG9042-RA	CCCCTGTTCACGGCTATTCACAAAATATGCACAAATCAGCTCAAGCCTAATGATTTAATTGATTGCATA	69	+	chr2L	5947243	5947312	5947243..5947312	CG9042-RB,CG9042-RC,CG9042-RA,CG9042-RD,	FBgn0001128,	Gpdh,	1	.
CG9565-RA	GTGCGAGGTGTGGTAAGGGGATAGTGCAATTTCGATCTCAGAACGAGCCAAAGATGGAGCCAAAGCCAA	69	+	chrX	19861477	19861546	19861477..19861546	CG9565-RA,CG9565-RB,CG9565-RC,	FBgn0031081,	Nep3,	1	.
CG32131-RA	GCGGAGCAGAATGGTGGTTCAACGACTGAACAAACACATGAACACAATCCAAACGTCGTACCTGATCAT	69	-	chr3L	13866279	13866348	13866279..13866348	CG34400-RC,CG34400-RD,CG34400-RE,	FBgn0085429,	CG34400,	1	.
CG3108-RA	GCCTCACCTGGCAGGCCTACCATCGTCTGGAGGACATTCACGGCTTCATTGACTATATGGCTAAAACCT	69	-	chrX	5672390	5672459	5672390..5672459	CG3108-RA,	FBgn0029807,	CG3108,	1	.
CG3228-RA	GCACCAATGTGGCAGAGACATCTCTCACCATCCCGCACATCAAGTATGTTGTTGACTGTGGTCGCCAG	68	-	chrX	2133796	2133864	2133796..2133864	CG3228-RA,	FBgn0001330,	kz,	1	.
CG9254-RA	CGGTGCCGATGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACCACTTTCCCCG	65	-	chr2L	13596507	13596572	13596507..13596572	CG9254-RA,	FBgn0028513,	CG9254,	1	.
CG33290-RA	AAGGACAAGTACGCCCAAACTAAAAATACAGCCCTGGAGAACTTTAATGGAGTTTCGGGACCCAAGGAT	69	+	chr3L	21535639	21535708	21535639..21535708	CG33290-RA,	FBgn0053290,	CG33290,	1	.
CG6046-RA	AGACACTTGCTCAGGCCAAATTCAGCATTGGAGACTTTCTGGACATCTCGATTACTCCGCCCAAC	65	-	chr3R	12012012	12012077	12012012..12012077	CG6046-RA,	FBgn0024491,	Bin1,	1	.
CG6131-RA	ACGCGTGCTCTTTGTCGGTTGCCTCATAGTAGGCGTGGGTATGGTGAGATCACAGGACTACCAAGACTA	69	-	chr3R	22910131	22910200	22910131..22910200	CG6131-RA,	FBgn0039480,	Cpr97Ea,	1	.
CG5989-RA	GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACAAGGACGTCTTTCGCTGCCT	69	-	chr3L	8596183	8596252	8596183..8596252	CG5989-RA,	FBgn0017429,	CG5989,	1	.
CG30042-RA	TTCTACGAGTACACTGGACCCGACGGCATCCTCTACCGCGTGGACTATGTAGCAGACGACAATGG	65	+	chr2R	8266678	8266743	8266678..8266743	CG30042-RA,	FBgn0050042,	Cpr49Ab,	1	.
CG11989-RA	GTACTACTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGCCGTTGACGACAAGGGCG	65	+	chr3L	9966461	9966526	9966461..9966526	CG42455-RA,CG42455-RB,CG42455-RC,CG11989-RA,CG11989-RE,CG11989-RD,CG11989-RC,CG11989-RB,	FBgn0259932,FBgn0263251,	CG42455,vnc,	2	.
CG13026-RA	GGCCCAGGTTACTTACCCTCATCATGAAGAGCCTTTTTGCTACCATGTTGGGCTACTTGCTCCTTGGGT	69	-	chr3L	16719117	16719247	16719117..16719154,16719215..16719247	CG13026-RB,	FBgn0036656,	CG13026,	1	.
CG1475-RB	GGGCAGAATTACATACGTTCAGATGCGTAGAAGTTTTTTAAAAGAGAATAAAACAACATCTAGTTT	66	+	chr3R	1451603	1451669	1451603..1451669	CG1475-RB,	FBgn0037351,	RpL13A,	1	.
CG6140-RA	TGCGTCCCGAGAAGATGCTGGGTCCTTCTTAGGTTTTCCTCCCTTGTTCCATGTGTTACACATTCATAA	69	-	chr3L	11456830	11456899	11456830..11456899	CG6140-RA,	FBgn0036162,	CG6140,	1	.
CG17509-RA	CGCTCTGCGATCTTGCCATGTACATTATCGACTCCAAGTTCAGTCCATTTGATGGCAACACGAGCACCT	69	+	chr2R	7920049	7920118	7920049..7920118	CG17509-RA,CG17509-RB,	FBgn0260012,	pds5,	1	.
CG31311-RA	TGAAACAAGCGCGCTTAAAACAGATAATGTAGATAAGTCCCCGACACCGCCTAAGGGTTAAGCCATCCG	69	-	chr3R	9536616	9536685	9536616..9536685	CG33748-RA,CG33748-RB,CG33748-RC,CG33747-RB,CG33747-RC,	FBgn0040077,FBgn0040076,	primo-1,primo-2,	2	.
CG4060-RA	AACCAGTTCTAAGTATTCTTCATTGCTCGTCACATCCAGATCTAGTTAGCTGTCATCAACACCACTTAG	69	-	chr3R	12966979	12967048	12966979..12967048	CG4060-RA,	FBgn0038487,	TwdlW,	1	.
CG7420-RA	ACTGTGCCGTCCTTACGCAAGACAACAAAATCTACGTTTTCGGACGATTGAGGATTATGGACCCTCCGC	69	-	chr2L	1501604	1501673	1501604..1501673	CG7420-RA,	FBgn0031344,	CG7420,	1	.
CG14164-RA	CGCCCTTTGGTCAAGCTCTGTTCAGACTGTTAGTCAAGCGATTCGGTGATCCCGCTATCATCTGGCAGA	69	-	chr3L	9887243	9887312	9887243..9887312	CG14164-RA,CG14164-RB,CG6709-RB,	FBgn0036057,FBgn0036056,	CG14164,CG6709,	2	.
CG14149-RA	CCCTGCCACGATCCAATCTCGTCGAGGAGGAATATCAGCCTGTGGAGATCTACAAATCCGACGATTACT	69	+	chr3L	10872726	10872795	10872726..10872795	CG14149-RA,	FBgn0036105,	blos4,	1	.
CG33248-RA	ACATCCGGTTTGAGTTCATTCGATTCCAACGCGTCCAACCAAAGACGTTTCAATCGCAAACATTCGGCT	69	-	chrX	14126528	14126597	14126528..14126597	CG42271-RB,	FBgn0259166,	CG42271,	1	.
CG14817-RA	GCAGGTAATGTTACTCCTCCGACACCCGTATCTCACCATGGAGCAGTCATTCGGTCATGCCAAGGA	66	-	chrX	1770918	1771041	1770918..1770944,1771001..1771041	CG14817-RA,	FBgn0026089,	CG14817,	1	.
CG31021-RA	GCGAGCTTAATGACTGGGTCCATTCGTTCCTTGCCTACGCACCCATTAAGTTTGAGGACCTGCAACAGG	69	+	chr3R	26428949	26429018	26428949..26429018	CG31021-RB,	FBgn0051021,	CG31021,	1	.
CG14223-RA	ACCACCAACACCAACAAACGAACCATGCGCAAGCTCAAAGCCAGACACACAATCTTAGCCAGTTGC	66	-	chrX	19554810	19554876	19554810..19554876	CG14223-RA,	FBgn0031053,	CG14223,	1	.
CG10407-RA	TGCACTCAGTGTACCGAAATGTCAAAGTCACAGGCATCTCAAAGCACACGGTCAATGAGCTGCGTCTGG	69	-	chr3R	11871150	11871219	11871150..11871219	CG10407-RA,	FBgn0038395,	CG10407,	1	.
CG15106-RA	CTATGCACTGGAGCAGTTTGTGGACTACTGGCGGGACAATTACCTGACCAAGTGGGATGAGCGCC	65	-	chr2R	14749076	14749141	14749076..14749141	CG15106-RA,	FBgn0034406,	Jheh3,	1	.
CG15027-RA	GCACGTCGCCAAAACAACAAGCACAAGGTCCGTTTGGGTCATGCCATCAAAAGCAACATCACTGG	65	-	chrX	14979616	14979681	14979616..14979681	CG15027-RA,	FBgn0030611,	CG15027,	1	.
CG2666-RB	AGCGAAGCGGACGTGTCTCGAATGCAGGCATCAGCATCAAGGATGTATTCAATGTGAACGGTGGT	65	-	chr3R	1204626	1204691	1204626..1204691	CG2666-RA,CG2666-RC,CG2666-RD,	FBgn0001311,	kkv,	1	.
CG41049-RA	CCCGTACAACATCCTGTGCGCTCTACCGCTAAAGGGGCTCTGGCCTTAATTCTGGATAATGAGCTCACA	69	-	chr3LHet	2153669	2153738	2153669..2153738				0	no match
CG15405-RA	GGCCGAGTGGACGATGAAGTTCCCCTACGACTATCGGGATGAGCGGATGATGAGCCATGTCAAACATAT	69	-	chr2L	3190610	3190679	3190610..3190679	CG34393-RA,	FBgn0085422,	CG34393,	1	.
CG2028-RB	GCGTACTGCCATGGCAAGGCATGAAGGCCAACACCAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGA	69	+	chrX	12549989	12550058	12549989..12550058	CG2028-RB,CG2028-RC,CG2028-RA,CG2028-RD,	FBgn0015024,	CkIalpha,	1	.
CG15537-RA	TCCTTTGTGGCCAATGTGCGGTTCCACAAGATCACGCAACCCTGTAACGTTTTGGTCCAGGACAC	65	-	chr3R	26261517	26261643	26261517..26261542,26261603..26261643	CG15537-RB,	FBgn0039770,	CG15537,	1	.
CG11482-RA	GCGAGCCCTGTTCCAGCATGAAACGCGCCTTTATATGTGCAACACACGGTCGTTTAGTGAGGAACTGTT	69	+	chr2R	4059236	4059305	4059236..4059305	CG11482-RA,	FBgn0011659,	Mlh1,	1	.
CG17337-RA	GGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGCAAAGACTTGCATAGTGGAGTT	69	+	chr2R	1586558	1586627	1586558..1586627	CG17337-RA,	FBgn0259979,	CG17337,	1	.
CG12090-RA	GCGTGGAACCACATGATTCCGAACAAGAAATGGAAGGCCCAGACGATAAACAACTCCGCGGACGG	65	-	chr3L	1523673	1523738	1523673..1523738	CG12090-RA,CG12090-RB,CG12090-RC,	FBgn0035227,	CG12090,	1	.
CG9134-RA	TCCAACTGGTCTTAGCTGGCGATTACTCCGGTGAATTTGAATGTTCATTTCGGACACTCATTGCTGACA	69	+	chr3L	1274295	1274364	1274295..1274364	CG9134-RB,CG9134-RA,CG9134-RC,	FBgn0035199,	CG9134,	1	.
CG15908-RA	GCGCGCTTCCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAACTGATTACCGT	69	+	chr2R	2555867	2555936	2555867..2555936	CG9410-RD,CG15908-RA,CG15908-RB,	FBgn0033086,FBgn0033085,	CG9410,CG15908,	2	.
CG15364-RA	AAGTCGATGCTCTAATGGGTAATGCACAGGTAAGCGGACCCAAAAACCCCGGAACTCAGCTCCAG	65	+	chrX	8934320	8934385	8934320..8934385				0	no match
CG31517-RA	GCGACATGCCCACACATTGACACCTACCAATAACCAACTATCAAGTACCGGCCATCCAATAAACGAACT	69	+	chr3R	9774350	9774419	9774350..9774419	CG31517-RA,	FBgn0047199,	CG31517,	1	.
CG8997-RA	TGCCGGACATGCCAAATTCGCCATCAAGGATATGGTTATCTGGGGCACTATGAAGTACTCACTCGGCGT	69	-	chr2L	13844725	13844794	13844725..13844794	CG8997-RA,	FBgn0028920,	CG8997,	1	.
CG12366-RA	GGAACGATATAGCCTTCAGCAGGAGAAGAACGATCCAGACAAGCCCAATTGCCACGCCAAGGATGG	66	+	chr2R	10049393	10049459	10049393..10049459	CG12366-RA,	FBgn0033901,	O-fut1,	1	.
CG9915-RA	CCGAAGGTGACAAAGAAGCGTGTAAAAATCACGGACACAGACAATGAAGAGGATGAGCAGGACAAGGGC	69	-	chrX	16205387	16205456	16205387..16205456	CG9915-RB,	FBgn0030738,	CG9915,	1	.
CG11710-RB	CAAGGGTTAAGGTTGGGATTCAGTTTCAAAACACATTCTTATTAGTTTAATGCCTGTATGAAAACAGCC	69	-	chrX	20298636	20298705	20298636..20298705	CG11710-RB,CG11710-RA,	FBgn0031115,	CG11710,	1	.
CR31930-RA	TCTAAATTGCCGGTACTGAACGTCTTGGTCGTCTCGATGGTCAAGTTGGGAACCCTTCTCCTGGCC	66	-	chr2L	1789798	1789864	1789798..1789864	CR31930-RA,	FBgn0045498,	Gr22d,	1	.
CG8152-RA	CTCGTGCAGAGAGGGGTCCAAGTAGAGACCTCAGACAAATCCGGAAACACAGCTCTGAAACTGGCC	66	-	chr2R	11198063	11198129	11198063..11198129	CG8152-RA,	FBgn0034008,	CG8152,	1	.
CG31196-RA	GCGAGCCCAAAGAGCAAATCCAGGATGTTGAGGATCAGGACGTGTCGTAATTTAAGTAAACCCCCGCCC	69	+	chr3R	14073960	14074029	14073960..14074029	CG31196-RA,CG31196-RB,CG31196-RC,CG31196-RD,	FBgn0020238,	14-3-3epsilon,	1	.
CG33047-RA	GCACCGGTGGAGATATTCTGAATGAGCAAAGCACTGAGGTTGTCATGTTGGGCATGGAGGATACCAAAA	69	-	chr3L	11512183	11512252	11512183..11512252	CG6128-RB,	FBgn0036169,	Fuca,	1	.
CG17723-RB	TTGCCGAAAAGGTGAAGGAGTTCTTCCACAACGAGGGTATCCACTCTACCACCATTCAGCCAGAGTTCA	69	+	chr3L	3312543	3312612	3312543..3312612	CG17723-RA,CG17723-RB,CG17723-RC,CG17723-RD,CG17723-RE,	FBgn0035432,	ZnT63C,	1	.
CG9633-RA	ACTTTGACGGTCATGTGCAGCCTGTGATCCTGGTCAAGGGAACACGCATTAACGAGTTCAATGGCG	66	-	chr3R	4088857	4088923	4088857..4088923	CG9633-RA,	FBgn0010173,	RpA-70,	1	.
CG17117-RD	CCCCCTTTGGAGTTGTATGCTAGGCGAACCCCTAAGCTTGCAAGCGAAACTCAAAGATACGAAAATCGT	69	-	chr3R	6408563	6408632	6408563..6408632	CG17117-RE,	FBgn0001235,	hth,	1	.
CG11113-RA	TCCAGCTAAAATTGCCAACTTTCGGATAACCAACAAGAACACTGTGCAAAACTACATAATCCTGCCGAC	69	+	chr2R	3289610	3289679	3289610..3289679	CG11113-RB,	FBgn0033165,	CG11113,	1	.
CG31163-RB	ATCGTGCAAATCCGTCAGAAACTTGTAAAAATTAATGCCGAAAATTGCCAAATCGAGCAAACAAAAGTA	69	+	chr3R	18120754	18120823	18120754..18120823	CG31163-RE,CG31163-RF,CG31163-RG,	FBgn0051163,	SKIP,	1	.
CG7998-RA	AGCGCCTATTGTGAATTGGCAAACTACCCATACTACCCCTAGCAAATCTTTCGTCTCAAGTCGGCGTGT	69	+	chr3R	14054268	14054337	14054268..14054337	CG7998-RA,	FBgn0262559,	Mdh2,	1	.
CG3314-RA	CCGTGGTCAAGAAGGTTGTTAACCAGCTGTTCGAGAAGCGTCCCAAGAACTTCGGAATCGGCCAGAATG	69	-	chrX	6426229	6426390	6426229..6426238,6426330..6426390	CG3314-RA,CG3314-RD,	FBgn0014026,	RpL7A,	1	.
CG10210-RA	GCGTCGGCTGCTATCAAGCGCGATATTGTTTTCACCGCATCCTTGTACACAGAACTGTGATCGAAGGAG	69	-	chr3R	19594752	19594821	19594752..19594821	CG10210-RA,	FBgn0039117,	tst,	1	.
CG16869-RA	CGCCATGTCCCTGGGATCTTCGGTTCACTATAGGGAGGTGCTAAAGGTTCTTCTTGGTGAGCCGG	65	+	chr2L	13911477	13911542	13911477..13911542	CG16869-RA,	FBgn0032535,	Ance-2,	1	.
CG7700-RA	CCAAAGATAGAGCTTGCATTAAACTCCATTACAGACAATTGAATTTTAGTTTGTTTTTTCCGACGGTAT	69	+	chr3R	14490913	14490982	14490913..14490982	CG7700-RA,	FBgn0044871,	Gos28,	1	.
CG7123-RA	GCTGCTCCAGAGGGCCTCCAAACTAACAGTCGATACGAACGCCAAGCTAAAGGATCTGAACGATCTGCA	69	+	chr2L	7820188	7820257	7820188..7820257	CG7123-RA,CG7123-RB,	FBgn0261800,	LanB1,	1	.
CG17648-RA	GAATCATTTAAAAATATCAAATTTCAAATGATTTCGATTGCTCAGTTGCTGACCTCTTTTACGGCCGGA	69	+	chr2L	1752355	1752424	1752355..1752424	CG17648-RA,	FBgn0031364,	CG17648,	1	.
CG7109-RA	TGATGGAGGGCTACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAGCGCCAAACTATTGCT	69	+	chr2L	7831532	7831601	7831532..7831601	CG7109-RA,	FBgn0004177,	mts,	1	.
CG6192-RA	TCCGCACTCCGTATCTCACCCTCACCCTAGTGATTAATGAAACTGCCACAAAGTGGTCCAATCCCAGGT	69	-	chr2L	11101677	11101746	11101677..11101746	CG6192-RA,CG6192-RB,	FBgn0032341,	Reps,	1	.
CG10297-RA	AGTGTCGTGCATTGTTTTCTATTTTCCTTGTTACTCGCATTAAAGCCGAACTTTCGATTCTCGAA	65	-	chr3L	6145147	6145212	6145147..6145212	CG10297-RA,	FBgn0020765,	Acp65Aa,	1	.
CG16982-RA	CAACCGCGAGTGGGATTTCCAGAAGTACGGCCACTAAAATCTACAAAACCCCCAAGACCCACCAGATGG	69	+	chrX	541919	541988	541919..541988	CG16982-RC,CG16982-RA,	FBgn0025638,	Roc1a,	1	.
CG16817-RA	AGGGCGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCCTCCACGAGGTG	65	+	chr3R	5504467	5504532	5504467..5504532	CG16817-RA,CG16817-RB,	FBgn0037728,	CG16817,	1	.
CG31230-RA	AGTTCCTCGGAGAGTAGTTGCAGCGAACCAAACTAGACGCATCTATGTAGAATATGGCTGACCGAATCT	69	+	chr3R	14497620	14497689	14497620..14497689	CG31230-RA,	FBgn0051230,	CG31230,	1	.
CG9451-RA	CCTGCGGTCACGATTGGACCATCACAAATGTGCTATCCGCCTTGAATGTTTGGGAGGCTCAGATGC	66	-	chr3L	19491825	19491891	19491825..19491891	CG9451-RA,	FBgn0036876,	CG9451,	1	.
CG32554-RA	CGCAGACTGAGCGGCATAATCCAGGAGCAAATCGAGTTCTCTCTGGATGTACCCAATGGCGTAGGCAAA	69	-	chrX	17746301	17746370	17746301..17746370	CG32554-RA,	FBgn0052554,	CG32554,	1	.
CG9614-RK	GGGAGGATACGAACACCACGTTGTCGGTTCTCGAGGGTTATATACCACGGTTCTTCAGTGGGGCCAA	67	-	chr3L	19304270	19304337	19304270..19304337	CG9614-RK,	FBgn0003089,	pip,	1	.
CG10387-RA	CTAGGCAACTTGAACCCCTTCTCTATGAAGCGACTGGACTCTTGGACACCGGAAAAGGCATGGCC	65	-	chr2L	18680848	18680913	18680848..18680913	CG10387-RA,	FBgn0015553,	tos,	1	.
CG7833-RA	CGCCATTCTAGAGGAGAAAGTCGGTCTGACCTGCAACCTTCTCTCCCAGATCTCAACTTTGGTGCACCT	69	+	chr2L	13831258	13831327	13831258..13831327	CG7833-RA,	FBgn0015271,	Orc5,	1	.
CG10496-RA	CCGAGGGAAATCCCGACATGGTTCCCGGTACAAGTCTACCAAAGCTATATGGCGCCACTACAGCGAAC	68	-	chr2R	17386713	17386781	17386713..17386781	CG10496-RA,	FBgn0034631,	CG10496,	1	.
CG5939-RA	ATACTTGTACGTAGAGAGATGAGAGAGATCAACCGAGTTGGCTGAACAATAACGTTTAATGGAAATGGA	69	-	chr3L	8726250	8726319	8726250..8726319	CG5939-RC,CG5939-RA,	FBgn0003149,	Prm,	1	.
CG8533-RB	CGTCTCTTCGACCATAAGCTCATTTGGACGGGGACTTCACAGGCCTGGATTACCACCATTGACGAGC	67	+	chr3L	19795862	19795929	19795862..19795929	CG8533-RB,CG42584-RA,CG42584-RC,CG42584-RD,CG42584-RE,	FBgn0260874,	Ir76a,	1	.
CG14728-RA	TACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATAGCTCGCGACTGATGACATTCCCGCCTCG	65	+	chr3R	7704443	7704508	7704443..7704508	CG14728-RA,	FBgn0003312,	sad,	1	.
CG17712-RA	CCGACAGCCCCCTGAATCACGACCAGATAATTCGATATGCACGCATGTCCACAATGTGAGGGAGTCTGT	69	-	chr2L	1750860	1750929	1750860..1750929	CG17712-RA,	FBgn0027597,	CG17712,	1	.
CG7963-RA	AGGCGGATCTTTACGAAATTGGGTTGCTACCAGGTCCACAATTGCTCCTATGCCAAGACACCCAAACGT	69	+	chr3R	4189045	4189114	4189045..4189114	CG7963-RB,	FBgn0037584,	CG7963,	1	.
CG8257-RA	AGCCCGTGCACTTGTTAGACGAGGGAGCGTTAAAGGCCCAACTGACTCATACAGTAACCGAATTCGATA	69	-	chr2R	10047400	10047469	10047400..10047469	CG8257-RA,	FBgn0033900,	CG8257,	1	.
CG10300-RA	ACGATCCCTTCCTGCTGAAGAAGGCATTTGCTCTGGTGGACCAATGCATACCACTGCGATTTGTTGAGA	69	+	chr3R	19538036	19538105	19538036..19538105	CG10300-RA,	FBgn0039107,	CG10300,	1	.
CG31769-RA	AGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGGATCTCACTGTCGCGGACATCAA	69	-	chr2L	14109822	14109891	14109822..14109891	CG31769-RA,	FBgn0051769,	CG31769,	1	.
CG4991-RB	TCTGCAGCTATAACCCATTTTAATAATTGATTACCATAGCAATAGGGCTTTGATTGTGTGAGAGCCTGC	69	+	chrX	16998351	16998420	16998351..16998420	CG4991-RB,CG4991-RA,CG4991-RC,	FBgn0030817,	CG4991,	1	.
CG4597-RA	ACGAACAAGGATCTCTGCAAGCTCCTCGATTCACTTCGCAATATTACAGTGGAGGAAATTCCGGGCGAA	69	+	chr3L	5122926	5122995	5122926..5122995	CG4597-RA,	FBgn0035594,	CG4597,	1	.
CG12202-RA	CGTCGTCATCCGTCACACAGCATCCTACAAAATGGTTTCGGACGAGGACGAGTCGATGAGGAATAGGAA	69	+	chrX	19378353	19378422	19378353..19378422	CG12202-RA,	FBgn0031020,	Nat1,	1	.
CG2837-RC	CCACCTCCTGCTCTTAGCCAGGATACCAATACGCTGAGCAATCCTGATCCTCTCAAGAGCAAATCTGAG	69	-	chr2L	4904267	4904336	4904267..4904336	CG2837-RA,CG2837-RB,CG2837-RC,CG2837-RD,	FBgn0031646,	CG2837,	1	.
CG17082-RA	TCAGGACTTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCCCAAAGTATCGAACCTG	65	+	chr2R	636811	636876	636811..636876	CG17082-RE,CG17082-RB,CG17082-RD,CG17082-RA,CG17082-RF,CG17082-RG,	FBgn0039994,	CG17082,	1	.
CG10566-RA	AAATCGCAGACCACCAACAATCCCTGGCTGGATCTTTTCGCCGACTTGGATCCCTTAGCCAATCC	65	+	chr3L	21126142	21126207	21126142..21126207	CG10566-RA,CG10566-RB,	FBgn0037050,	CG10566,	1	.
CG18673-RA	CCCTCTATTAATGGCAGTCTCTTGCCCGGGAATTTCGAGGCCCAGAGTGTCCACTTCCATTGGGG	65	+	chr3R	27088919	27088984	27088919..27088984	CG18673-RC,	FBgn0040629,	CG18673,	1	.
CG13374-RA	GCAGGGAACAAATTTCGTAGATGCATACTTCGACGGAATACTGGGCATGGGATTCCCCTCTTTGGCCGT	69	-	chrX	330864	330933	330864..330933	CG13374-RA,	FBgn0011822,	pcl,	1	.
CG13361-RA	GGGCAACTACCCCGTTTTCGTGTACAATGGAACCAGGGGAGAACTGATTCTCAACACCATGCTGAGCAG	69	-	chrX	647165	647234	647165..647234	CG13361-RA,	FBgn0029532,	CG13361,	1	.
CG3301-RB	ACACAAGCTGAGAATAGAGGATTGAGCCGGTGCAATATCATATTACACTCACTATCAAGCCGTGGGCGA	69	-	chr3R	17100059	17100128	17100059..17100128	CG3301-RB,	FBgn0038878,	CG3301,	1	.
CG15124-RA	TGGCAGCGTTGCAAGAGCTTAAGAAGTATCTGCTGGATTTGCATTCGGAGATCAAAAAGCCCGGTGCAG	69	+	chr2R	15530765	15530834	15530765..15530834	CG15124-RA,	FBgn0034461,	CG15124,	1	.
CG4409-RA	GGGTTTTCCCCAGGACGATCTAATTAAGCCGGGTAGTGACGAATCGGATGTGAGTGGCATTGGCT	65	+	chr2R	12330813	12330878	12330813..12330878	CG4409-RB,	FBgn0034128,	CG4409,	1	.
CG13317-RA	CGAGAAGGACATTTACCGACTGACACGGCGCAACAAAAAGAGGACGGGCAATGATGAGGCTTGGATCAA	69	+	chrX	3562359	3562428	3562359..3562428	CG13317-RA,	FBgn0044046,	Ilp7,	1	.
CG6772-RA	CGAACCCAAAACCAACAATGAACAACTCACAAAGAATATCTCACAATTCAAATTTACAAAACGAATATC	69	-	chr2L	7647113	7647182	7647113..7647182	CG6772-RC,CG6772-RB,CG6772-RA,CG6772-RD,CG6772-RE,CG6772-RF,CG6772-RG,CG6772-RH,	FBgn0024290,	Slob,	1	.
CG31281-RA	CCTGTCACGAGAGAATCCAATTTCGAATCAAGCTTAGCCAAGCGGTTACACAATCGCCGTAAGTTCCGC	69	+	chr3R	18792719	18792788	18792719..18792788	CG31281-RA,	FBgn0051281,	Tpl94D,	1	.
CG1299-RA	GCACACAGTACTTCATGGACTGGATCATCCAACAGGTCCAGGACACACCCTGATTTGCCATCGCCAT	67	+	chr3L	4152233	4152300	4152233..4152300	CG1299-RA,	FBgn0035501,	CG1299,	1	.
CG17216-RA	TCGGAGTCCCATTACTCAGTCGCCAAGTCAAGCTTCAGAATGCACCAGAACACCACCGACTCATTTCGA	69	-	chr3R	7172444	7172513	7172444..7172513	CG17216-RA,CG17216-RB,CG6715-RB,	FBgn0026063,FBgn0026064,	KP78b,KP78a,	2	.
CG10154-RA	CAAGTGTGCACCTACATGGAGGAGGTACAGTGTCTGCCCACCTGTGAGTCGTTCCGATTGAGCAG	65	-	chr3L	13429636	13429701	13429636..13429701	CG10154-RA,CG10154-RB,	FBgn0036361,	CG10154,	1	.
CG12846-RA	TGTGGGTGGACCATGTGCAGATACAGCAATCTTTGGAGAAGATCGTCCAGACCATATGGGATCAACGCA	69	-	chr2R	2897974	2898043	2897974..2898043	CG12846-RA,	FBgn0029507,	Tsp42Ed,	1	.
CG13323-RA	GCCGGATTCTACAACATCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCTCCT	69	-	chr2R	8934484	8934553	8934484..8934553	CG13323-RA,	FBgn0033788,	CG13323,	1	.
CG8339-RA	GCGTCACAACTGACAGGATGAAAATTTGACGGAATTGCGATGGAAAATCTATCACACTCGTTTCCAGTT	69	+	chr3L	6542035	6542104	6542035..6542104	CG8339-RA,CG8339-RB,	FBgn0020251,	sfl,	1	.
CG2194-RC	CGTGACTTCCCCGAGAAGATCGTGATAGCCAGCATTATGTGCAGCTTCAACGAGGAAGACTGGACGGAG	69	-	chrX	9092210	9092279	9092210..9092279	CG2194-RB,CG2194-RC,	FBgn0086450,	su(r),su(r),	1	.
CG3725-RH	ACGATTCCACCAAGCGAGCGTCCTAATGTTTCAAGAGTATCGTCCTATCCCTGGGCTTGTTTAACGTAA	69	-	chr2R	19816018	19816087	19816018..19816087	CG3725-RH,	FBgn0263006,	Ca-P60A,	1	.
CG11784-RA	TGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGCCCACATCGACCATCGCATGCACTACGAGAACG	68	+	chr2R	5010230	5010298	5010230..5010298	CG11784-RA,CG11784-RB,	FBgn0033381,	CG11784,	1	.
CG11012-RA	GCTGAACTCTCTGATTGGCAATCCCCATGATAAAGTGGAGAAGGAGAAGGGCATGACCTTTGGACAGCG	69	-	chr2L	20373503	20373572	20373503..20373572	CG11012-RA,	FBgn0026756,	Ugt37a1,	1	.
CG13840-RA	CGGCCAATCCAGTTAAGCGTCAGCAGGAAGAGTCCCTATCGAGTCATCATCCAAACCGGGAGCAAAG	67	-	chr3R	18641019	18641086	18641019..18641086	CG13840-RB,	FBgn0039028,	CG13840,	1	.
CG14928-RA	AGTCCAGAATCGAACAGCGTCTACGAAGTGGTGTCCCCTTCCGTTCTTTCAACCACGTCCACTGC	65	+	chr2L	11506773	11506838	11506773..11506838	CG14928-RB,	FBgn0032362,	spz4,	1	.
CG6860-RA	TAGCACCACCATTAAATCCCCAGTCAGCTCAACCACCAAACTTGGCACAGTAAAGACGCATCGTTCGGT	69	-	chr2L	17373007	17373076	17373007..17373076	CG6860-RA,CG6860-RB,	FBgn0032633,	Lrch,	1	.
CG10243-RA	GCGTGGTCGATGAAAAGATCTCCAGTTCTTCGCAGACCCTGGAAGTCACCGACATTGTGTCACGCTTCA	69	+	chr2R	10765779	10765848	10765779..10765848	CG10243-RA,	FBgn0033979,	Cyp6a19,	1	.
CG2177-RB	CTGGAACGTGTCAAGGAAAGAAGTATTAACGAGTGCTTCTCTTTCCACTTACCTGCGTTCTACCAAATC	69	-	chr4	331869	331938	331869..331938	CG2177-RA,CG2177-RB,CG2177-RC,	FBgn0039902,	CG2177,	1	.
CG17183-RA	TGAGTACCGGAAAGTCCTGCAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCT	69	-	chr3L	653126	653195	653126..653195	CG17183-RA,	FBgn0035149,	MED30,	1	.
CG1560-RA	CCACGACCACTGTCTGTGCTTGAACCGGAAATCAGAAGGAACCCCAACCAGTCAAACTTAAACACCAGC	69	+	chrX	7963013	7963082	7963013..7963082	CG1560-RA,	FBgn0004657,	mys,	1	.
CG8333-RA	AGCTCAAAGAACTCAGCTTACATCGAAACTACAAAAAGAACAATAAGAAACACACAAAATGTCGT	65	+	chr3R	21825606	21825671	21825606..21825671	CG8333-RA,	FBgn0002735,	HLHmgamma,	1	.
CG31738-RB	GCCCAACCATGACTACAGGCAATTGTATCGCGGTCCAGAGACCAAATTCACCATTGACAATCTGGCAGC	69	+	chr2L	16660982	16661051	16660982..16661051	CG42389-RE,CG42389-RF,CG42389-RG,	FBgn0259735,	CG42389,	1	.
CG13000-RA	TCTGGAGCCATCTGATCCATATACTGCTGCAGTTCATCCAGACCAACTGCTGGAATCACATCACACAGA	69	-	chrX	16842361	16842430	16842361..16842430	CG13000-RA,	FBgn0030807,	CG13000,	1	.
CG8272-RA	GGTTCCCTGCAGTCCATTAAGATATCGCTCAGGAGCAAGGCCGAGGATGAGATTGTTCGGGATGCC	66	-	chr2R	4777096	4777162	4777096..4777162	CG8272-RA,	FBgn0033337,	CG8272,	1	.
CG3881-RA	CCGGTTTTGCAGTGAATTTGGAGTACATGGCGCAGTATCCCTATGTGAATATGCCGTACAAGCCCGGCT	69	+	chr2L	9622017	9622086	9622017..9622086	CG3881-RA,CG3881-RB,CG3881-RC,	FBgn0032135,	GlcAT-S,	1	.
CG5022-RA	GCGCAACTCACCCGAAATGCTTTGTCTGCGCTATCAGTACTATCAGCCACTGAAGGAGTTCGTTCTGGA	69	+	chr2L	10347457	10347526	10347457..10347526	CG5022-RA,	FBgn0032225,	CG5022,	1	.
CG17193-RA	CTGGCAACCACGTGGTGAGCAAGTCCTTTTAAGATCCTGCAGATGAAGAGCACTTACGGCGGAGC	65	-	chr3R	15863269	15863334	15863269..15863334	CG17193-RA,CG17193-RB,	FBgn0040571,	CG17193,	1	.
CG2252-RB	TCCGCACATGTTTCCAAAGCTTATTATTTTTAATATTATTGATTGCCTAGGCAAGTTTAGTTCGTAGGT	69	-	chrX	7934301	7934370	7934301..7934370	CG2252-RB,	FBgn0004656,	fs(1)h,	1	.
CG32408-RA	CTTTTGTGGTGGCAGTCTGTTTATTTACGCCGCATTGTATGTAGAAACTTACATATGGGCGAGCC	65	+	chr3L	5884024	5884089	5884024..5884089				0	no match
CG7739-RA	TACATCGGTCAGGCTGTGTTCATGGACTTCGAGCTAAAGGGCGTGCAGAACATTGTGGTTCCGTTTTGC	69	-	chr3L	15555169	15555238	15555169..15555238	CG7739-RA,	FBgn0036509,	CG7739,	1	.
CG6203-RB	CTCCCCTAAATATGGACATCATGTGGGGTCAAGAATACGAAAATTTGTACAGCAAGTTTATTAGTTATT	69	-	chr3R	5929841	5929910	5929841..5929910	CG6203-RB,	FBgn0028734,	Fmr1,	1	.
CG6912-RA	TGTCTCAGCTCCCGGATCAGCAAGCAAGTTAAACAGTATGCTTGTGAAGTCATTCAGATCGGCCCTGGT	69	-	chr3R	10962615	10962684	10962615..10962684	CG6912-RA,	FBgn0038290,	CG6912,	1	.
CG6821-RA	GCAGCTCCAAGGAGTTCAGCTGGACCGCTGAGGACAGGATTACATACACCGAGCTCTACAAGTACGTGA	69	+	chr3L	68446	68515	68446..68515	CG6821-RA,	FBgn0002564,	Lsp1gamma,	1	.
CG32535-RA	CCCCGGGGATCGTAAATACATAAGCTCTGCAACTCACGTACGTAATCTTTGAATCCGTCGTAGCACGAA	69	+	chrX	19424078	19424147	19424078..19424147	CG33525-RE,CG42687-RG,CG42687-RF,CG42687-RJ,	FBgn0261573,	CoRest,	1	.
CG2241-RA	AGGCTTTCATTCATATTATACGCAGAAAATATCAGAGCTTCAGTTCACTGTGAACGAACGCCAAAAGAA	69	-	chr3R	26409141	26409210	26409141..26409210	CG2241-RA,	FBgn0039788,	Rpt6R,	1	.
CG2903-RA	GCGGCTGTTAAGCGAAAAAATGTATGTTTTGTTTAGTTGAACGCGGTTATTAGTTACTATTTCAAAAGT	69	+	chr2L	2743143	2743212	2743143..2743212	CG2903-RB,CG2903-RC,CG2903-RA,	FBgn0031450,	Hrs,	1	.
CG31202-RA	GGCGACTTCGCAACCTACAAGCTTGGTGCCACTATCATCGAGAGCTTGGACACTTTGCATTTGATGGGT	69	-	chr3R	25755718	25755787	25755718..25755787	CG31202-RA,	FBgn0051202,	CG31202,	1	.
CG1907-RA	TGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATTGGGCATGTACACGTATCTGAACGACC	65	+	chr3R	25445568	25445633	25445568..25445633	CG1907-RA,	FBgn0039674,	CG1907,	1	.
CG17601-RA	TCCACTGGCAACTGAAACAATAAATCGGCGTCCGGATACATTCTCATATTTTCTCCCCGGTCCAAATGA	69	+	chrX	21949183	21949252	21949183..21949252	CG17601-RA,	FBgn0031197,	CG17601,	1	.
CG15555-RA	CCGACATGGGATTGGTCTTGACTCTGAAAACGGACCCCAGTGACAACTTTTACAAGATTAATGGCCACA	69	+	chr3R	27092629	27092698	27092629..27092698	CG15555-RA,	FBgn0039839,	CG15555,	1	.
CG13545-RA	GCTTTGGCCCTATTAATCCATACTATCATCTGCAGTTCCTCGTCTGCTTGGCTCTCTTCATCGCCGC	67	-	chr2R	19045494	19045617	19045494..19045554,19045610..19045617				0	no match
CG8887-RA	GAAGAGGGACACCGTTACTATCTCTCCCTAATGCGTGGTGATCTGCAGGTACGACAGGGCGATGC	65	-	chr3L	19585401	19585466	19585401..19585466	CG8887-RB,CG8887-RC,	FBgn0005386,	ash1,	1	.
CG8013-RA	ACGTATACATGCATAAATAAAAATCCACTTCGAGCACACGCAAAATTAATATTGCTAAAAGCCACTGAA	69	-	chr3L	19911365	19911434	19911365..19911434	CG8013-RA,	FBgn0020887,	Su(z)12,	1	.
CG15545-RA	GCCAAAATATGTGACGGCCATTCCATACAAGGCATCTGGTTATGGATCCGATATCCACAAGCCCTCCGG	69	-	chr3R	26697371	26697440	26697371..26697440	CG15545-RA,	FBgn0039806,	CG15545,	1	.
CG8675-RA	TTAGTCCTAAATAGTTTAGCAACTTGGTAGAGCACGATAAAGTGGACCTGGAGAACCGATTCCAG	65	-	chrX	17142549	17142614	17142549..17142614	CG8675-RA,	FBgn0030834,	CG8675,	1	.
CG7791-RA	TGGATCTGGCAGACGTACTTTGAAGCCAACCCATTCAATCGTCAGGCTGGTGAGAAATATCGGGCCGAA	69	-	chr2R	1645753	1645822	1645753..1645822	CG7791-RA,	FBgn0033038,	CG7791,	1	.
CG14619-RA	GGTAACACCAGCGTCACCTTTGATCCGTTCTGGGATCTGAGTGTACCGTTGCCGTCTTCGTCCCG	65	+	chrX	21869243	21869308	21869243..21869308	CG14619-RE,CG14619-RD,CG14619-RA,CG14619-RC,CG14619-RB,	FBgn0031187,	CG14619,	1	.
CG13287-RA	CGCGGGTTTATGATGATCCCAGTGTGGTCATACCCCTGGTGGATTCTCCAGAGGCACCATCAACTTCTT	69	+	chr3L	5875945	5876014	5875945..5876014	CG13287-RA,	FBgn0035643,	CG13287,	1	.
CG1403-RA	TACCTTACCCTTATCTGTGTTGTCTCAAAGCGAGCAATTTATTTAGGTTATACTATATGTTGCGTGTCA	69	+	chrX	21232358	21232427	21232358..21232427	CG1403-RA,	FBgn0011710,	Sep1,	1	.
CG3180-RA	TGCCGTCAACGTGCAAAAGATCTCCACCTTCCTTCAGGAGTACGGCTATCATCTTCGAGGCAATGAGGT	69	+	chr3R	9954887	9954956	9954887..9954956	CG3180-RA,	FBgn0262955,	RpII140,	1	.
CG8733-RA	CATTGCAGGCTCCCAGACCACTAGCAATACGATCAACCTGGCCCTAATGGTACTTGCTATGCGCC	65	-	chr3L	19804181	19804246	19804181..19804246	CG8733-RA,	FBgn0036910,	Cyp305a1,	1	.
CG6352-RA	GGATGCCCCAAATCCGGAAATTAGTCCCAATTCCGTAACCAATTCGTCCTCCGTGTATATGATCCGCCA	69	+	chrX	17685251	17685320	17685251..17685320	CG6352-RA,	FBgn0026058,	OdsH,	1	.
CG9064-RA	CGATGCCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAAGTCGCTCTACGC	67	+	chr2L	5968911	5968978	5968911..5968978	CG9064-RA,	FBgn0031757,	Ucp4C,	1	.
CG17226-RA	GGTGGATATCAACTGCATCGGGAACGTGATCAAGTCATGCGTAACTTATTCCCAGATGTGGCGTTTTCG	69	-	chr2R	19360794	19360863	19360794..19360863	CG17226-RA,	FBgn0034866,	Or59c,	1	.
CG15214-RA	GGGGGAAACGGAAGGCTCCATACGTGTTTACGACCCTGAATCCACACGACCCTACGAGTATATGTGCAC	69	+	chr3L	5429700	5429919	5429700..5429732,5429882..5429919				0	no match
CG14032-RA	GAGATCCGCGACATTTCCCGAAACCAGATCTGTTCCAGCCAGACAGATTTCTACCGGAGAACACAGTGA	69	+	chr2L	5265509	5265578	5265509..5265578	CG14032-RA,	FBgn0031693,	Cyp4ac1,	1	.
CG33115-RA	CCACACTCAGCGATATGTGGTGGTTGTGAGTTCGGAGCTCTCACTTTTCCAGCATCACTGAGCAGTCTC	69	-	chr2L	13968302	13968371	13968302..13968371	CG33115-RA,	FBgn0028542,	nimB4,	1	.
CG4670-RA	TGTGATGATGGTGTTGGCATTTAAATTGTTCGCCTTCAAGGGATACCGCAAGAAGCCCTATGGCCACGA	69	-	chr2R	9119588	9119657	9119588..9119657	CG4670-RA,	FBgn0033814,	CG4670,	1	.
CG2702-RA	TGGGGTTTCGAGCCTTATGCATTCTTTCCGGAGATTGTCGCAAGGATACGGAAACACGTAGCTTCGAAT	69	+	chr3R	3841540	3841609	3841540..3841609	CG2702-RA,	FBgn0037540,	Pbp95,	1	.
CG1701-RA	AGCTGCCGAGCTTTAAAATGCCGAACATCACAATTGTCATCGTGGAAGACGAGTTGTCCAAGATTGCGA	69	-	chr2R	3296489	3296558	3296489..3296558	CG1701-RB,	FBgn0033167,	CG1701,	1	.
CG8404-RA	ATGAGCAGCTACACGGTCTCCATGGCGGATAACTGCGGAAATCTCAGGCTCAGCATGAACGAGTT	65	-	chr2R	10089802	10089867	10089802..10089867	CG8404-RA,	FBgn0005613,	Sox15,	1	.
CG14567-RA	GATTTGGAGAGCCATCCAGTTCGCAGAGGCCAGCTCTAGTCAATCTACCGTTTGGAGCCTCCCAG	65	-	chr3L	21731203	21731268	21731203..21731268	CG14567-RA,	FBgn0037126,	CG14567,	1	.
CG6897-RA	CGCTTGTCTGGCAGGAGCAAGTCAAGTGGTGGTCCCGACATCTTTAATAGTTCCATGCGCCGGAAACTC	69	+	chr3L	18616607	18616676	18616607..18616676	CG6897-RA,	FBgn0259791,	bora,	1	.
CG6808-RA	CCGCGTACCTGACAACCCTTTTACTTTTAATTCACTGCTCTGGCATTTGAATCGGCATTTGACGCGAAA	69	-	chr3R	7448783	7448852	7448783..7448852	CG6808-RA,	FBgn0037921,	CG6808,	1	.
CG32491-RN	AGGAACTGGAGGAGTACATCGAGATCTGCACGTCGAACCCAAAGATATCACAGTATCTGGGCAGTAGCA	69	-	chr3R	17198487	17198556	17198487..17198556	CG32491-RN,	FBgn0002781,	mod(mdg4),	1	.
CG10961-RA	GGCACCGATGTCTTCCGATTGCGTTAAGTTTGCACCAAGGTGGATCGTGAATCATAGGGACCCAAAGGT	69	-	chrX	8049765	8049834	8049765..8049834	CG10961-RA,	FBgn0026318,	Traf6,	1	.
CG32431-RA	AGCTCACTACGACACCCATAAAGGCAAGTTTTATGCCCTAACTTGATCGTTAAACTCCCATGAGG	65	+	chr3L	20681474	20681539	20681474..20681539				0	no match
CG7948-RB	AGGAGGAAGAAGGTCCACTCAGCGTGACTAAGTTAATAGTGAGTAGGCTGCGATCTCGACCAGGATTAT	69	-	chr3R	25881552	25881621	25881552..25881621	CG7948-RB,	FBgn0003479,	spn-A,	1	.
CG17265-RA	GACTTCGCAGAATCAAGTAATCAACGCAATTGTTGTCTATTTACGATTTGGAGCAACTTTCTTGTGGTC	69	+	chr2L	3015832	3015901	3015832..3015901	CG17265-RA,	FBgn0031488,	CG17265,	1	.
CG1821-RC	GGCACCACCGATGTGAGGATCGACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTC	65	.	.	.	.	.	CG1821-RC,CG1821-RB,CG1821-RA,	FBgn0025286,	RpL31,	1	.
CG7265-RA	AGCTTCTTGCCTTTTGATGCGGCAGATATACCAGAGAACGACGTCAGCTTGGTGAGTGGAAGGCTACGA	69	-	chr3R	10718338	10718407	10718338..10718407	CG7265-RA,	FBgn0038272,	CG7265,	1	.
CG8399-RA	TCCTAGGCCCCCTAATTCGGATGTCCTGTAACCTGTCCCCTTCCAATACTCGTGTCAGTTTTGTGTGCT	69	+	chr2R	11911891	11911960	11911891..11911960	CG8399-RA,	FBgn0034067,	CG8399,	1	.
CG1775-RA	GCAAGCGAAACAAGTAGATGTAACATAAGTGTAATAAACAGACCGTGAAATTACGATTCTAAAGGCTTC	69	+	chr3R	27441050	27441119	27441050..27441119	,CG11539-RA	,FBgn0039859	,CG11539	1	.
CG12838-RA	GCGCTGAATAAGATTGATCAAAAATAAAGAAACAGAAAAAACTGCATCGCAAGTAAAAAATGCCCACGG	69	+	chr2R	2942322	2942391	2942322..2942391	CG12838-RA,	FBgn0033136,	Tsp42Eo,	1	.
CG31835-RA	TCCGAATTCAAGGATATTCGATATATCCGTATGGCTGTCAACTGGACGTGTGAGCTCCGATCCCCAGCT	69	.	.	.	.	.	CG42585-RA,CG31835-RA,	FBgn0260953,FBgn0051835,	CG42585,CG31835,	2	.
CG6231-RA	GCCACCCCGTCCTAGTAGTTCGTAGTTTAGCTAACCAATTTCGCCTAGATCCTAAGAGCCCAGACCGTA	69	-	chr3R	15442285	15442354	15442285..15442354	CG6231-RC,CG6231-RD,CG6231-RB,CG6231-RA,	FBgn0038720,	CG6231,	1	.
CG18734-RG	GTTGTGGGCAGTGGTAGTGCGTACAAAAGCAGCGAATCCAAGCACGGATCCTTCGAGAACGATGG	65	+	chrX	16274611	16274676	16274611..16274676	CG18734-RB,CG18734-RE,CG18734-RG,CG18734-RA,CG18734-RD,CG18734-RC,CG18734-RF,CG18734-RH,CG18734-RI,	FBgn0004598,	Fur2,	1	.
CG32596-RA	CTGCGGAGTGACATTGACAAAGTTTGCACAAAAACGATGTCTGAACTGACAGCTAAGTTGCCGCT	65	-	chrX	14328580	14328645	14328580..14328645				0	no match
CG4949-RB	TGGTCTCCCAGAGATTCGCCTAGACGAAGGACAGAAGTTTGGAGCCACTACAGTGCCTTGGTAACCAGT	69	+	chrX	16973596	16973665	16973596..16973665	CG4949-RB,CG4949-RA,	FBgn0030813,	CG4949,	1	.
CG7206-RA	ACTCATATCCCATGTTCTCCTTATCGTCTCCCTAGCCTACCAGCGTCTCATGCTGTTAAGAGCTTCGCT	69	-	chrX	17983923	17983992	17983923..17983992	CG7206-RC,	FBgn0030892,	CG7206,	1	.
CG8395-RA	GCATCGAGACGGTTCCGCTGTTGGTCACAGTTTGCAAGATCGGTGATTATGTCCTGGTGGATCCTTC	67	+	chr2R	11903221	11903288	11903221..11903288	CG8395-RA,	FBgn0034065,	Rrp42,	1	.
CG7222-RA	GCGCGAAGACTCCGACAACAGTCCCCTTTGAGACGTTACCTGACCGAAAATATGTCACTTGGCGACACA	69	+	chr2R	6702584	6702653	6702584..6702653	CG7222-RA,	FBgn0033551,	CG7222,	1	.
CG32256-RA	CTACGAACTGGTGCTCATCAACCAAATGGCTGGATCTGAGGTGCAAAAGAGCTTCTGCGAGGGCG	65	+	chr3L	4031828	4031893	4031828..4031893	CG32256-RA,	FBgn0045477,	Gr64c,	1	.
CG3772-RA	CCGTTCTCTATGTCGGGAGCTGAATATCGACTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCA	69	+	chr3R	15039425	15039494	15039425..15039494	CG3772-RA,	FBgn0025680,	cry,	1	.
CG4697-RA	GGCCTTTGCGCTCTAGCCACTTTCGATCGGGAAACCTTACAGCTGAACGCTATCAACTCGGAAGCATTT	69	+	chr2L	14763655	14763724	14763655..14763724	CG4697-RA,	FBgn0028838,	CSN1a,	1	.
CG11062-RA	CAAAGCACTAGGTTGGGATGACTGGATTATTGCACCCAGAGGATATTTTGCAAACTATTGCCGAGGCGA	69	-	chr4	1098723	1098792	1098723..1098792	CG11062-RA,	FBgn0024913,	Actbeta,	1	.
CG12244-RA	TGTGTCCCCCGTCTGTGTGACAGCAAAAGGAATAAAACTTTATTTGAATGGAGTCCAAGGAAACCCCAA	69	+	chrX	12987537	12987606	12987537..12987606	CG12244-RA,	FBgn0261524,	lic,	1	.
CG12313-RA	ACGCCGAGGAGGTAGAAAAAACTAGCAAGTCTAGGCCCGTTGTCAAGAACTGGACCCGTGGCTTCATAA	69	+	chr3L	276490	276559	276490..276559	CG12313-RA,	FBgn0035124,	ttm2,	1	.
CG31730-RA	GGGCTGCCTATCAATTGTACACTTCTTTGGGTTATGCTCATCGCCAAACATTCCTGGACTACTATCCGG	69	-	chr2L	13259214	13259283	13259214..13259283	CG31730-RA,	FBgn0051730,	CG31730,	1	.
CG8246-RA	CGCCCCATTCAAACAGTACTAATTTAATCTAAGTTGGAACTCGAATTGATGGAATTTCTGTGGTCACAC	69	-	chr2R	11714393	11714462	11714393..11714462	CG8246-RA,	FBgn0003130,	Poxn,	1	.
CG16997-RA	CAGCGAGCACAACACAGAAGAGGCAAATCACCCACTATGTGATCAATGATCTTTATACCGGCGGA	65	+	chr2L	12111430	12111495	12111430..12111495	CG16997-RB,	FBgn0263235,	Phae2,	1	.
CG14365-RA	TTGGTGGTAGCAATCCGTCGGATGATGGCAATCCTAACGAAGATGGTGCTGGTGAAAACACGGAGGA	67	+	chr3R	9580692	9580759	9580692..9580759	CG34383-RC,	FBgn0085412,	CG34383,	1	.
CG32412-RA	TGGAGGGCAATAACAATATGTTTTTAAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGT	69	-	chr3L	5894264	5894333	5894264..5894333	CG32412-RA,	FBgn0052412,	QC,	1	.
CG5911-RB	CCGGCTACTACAACCTGCTGTACTTCTCGCGCTTCATGCTCTACCTAAACTCAGCCATGAACCCGATCC	69	+	chr3R	17090190	17090259	17090190..17090259	CG5911-RB,	FBgn0038874,	ETHR,	1	.
CG5889-RA	CCCCCCTACAAACCGACCGCCTAGAACAATTGGCTAGACAGCAGAGCTAACTGGTGAGAACAACCCAAA	69	+	chr3R	22982896	22982965	22982896..22982965	CG5889-RA,CG5889-RC,	FBgn0029155,	Men-b,	1	.
CG7779-RA	ACACACACCGAATTGATTTAGCGCACCATGATGCAACCAACTGACCGATCCGACGAGAAACATTTCACA	69	-	chr2R	12130896	12130965	12130896..12130965	CG7779-RA,CG42701-RB,	FBgn0261612,	Cng,	1	.
CG8853-RA	CAGCAAATCAGGAAAGCGATCGCCAAACTGAAGGATGACACTGCGCAACTGAATCTGGAGGTGGC	65	+	chr2L	3532376	3532441	3532376..3532441	CG8853-RA,	FBgn0031550,	CG8853,	1	.
CG15678-RA	ACCGACAGACTGGACGGTGATTTTTACGAGTGATTAGCAGCGGAAAGAAACGATACCGGCGGTAATTCA	69	-	chr2R	17549429	17549498	17549429..17549498	CG15678-RA,	FBgn0034647,	pirk,	1	.
CG17594-RA	ACTATGGCGAATCCGTACGCTATGGGAACCTTATATCACAGCCCAGGTGTACAGACCTATTGCGGACCT	69	+	chr3LHet	211680	211749	211680..211749	CG17594-RB,CG17594-RA,CG17594-RC,CG17594-RD,	FBgn0028993,	scro,	1	.
CG6869-RA	TCCCATGTTACTAGCCCCAAATGGTTTTGAGAGCACAAAAATCGACCCATCCTTCGCTAATCCATGTGT	69	+	chr3L	15146566	15146635	15146566..15146635	CG6869-RA,	FBgn0036485,	FucTA,	1	.
CG13917-RA	CGAGTCGCTCTCGGGTAGCTCGAAACTGGCTAGAATTCAGCAGATTAATGGCCATTCAAAAGGAGCTGC	69	+	chr3L	1599050	1599119	1599050..1599119	CG13917-RA,CG13917-RB,	FBgn0035237,	CG13917,	1	.
CG4584-RA	CTCTGTACTTTCGAAGCATTCCTGTAATAACTCAATTTGCTCCAAATGCCATCAACCGATTTCGCCGAC	69	+	chr2L	11011395	11011464	11011395..11011464	CG4584-RA,	FBgn0250837,	dUTPase,	1	.
CG1665-RA	GGAGAGGATACACTTTTTTCCGGTCAAGTCCTGTGCCCCTATGGACATCTCGAAGCCCGGAGTGG	65	+	chr2R	5727548	5727613	5727548..5727613	CG1665-RA,	FBgn0033451,	CG1665,	1	.
CG31244-RA	TCCTCAGCTCAAGTCCAGCGTTACTCCCTACAGACCAAAGCCGAACCTAATCCGTAGTGATTCCCCGAA	69	-	chr3R	15224082	15224151	15224082..15224151	CG31244-RA,	FBgn0051244,	CG31244,	1	.
CG6305-RA	CGGTTGTCTAGGAAATCAATCTAGCCGAACCTAAAAAGATAAAACCACCTCCTCTTTAACTGAGGCCCC	69	+	chr2R	9682314	9682383	9682314..9682383	CG6305-RA,	FBgn0033869,	Cpr50Cb,	1	.
CG13981-RA	TGCGTCCGGCAAATCGAGCATTAAATACCTATCGAATCTGAACGAGATCGACAAGTCGAAGCAGAAGCT	69	-	chr2L	6378972	6379123	6378972..6379027,6379109..6379123	CG42368-RA,	FBgn0259714,	CG42368,	1	.
CG8582-RB	CAGCGCGTTCTGATGATCCTGGACAGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCC	65	-	chr3L	7361004	7361069	7361004..7361069	CG8582-RA,CG8582-RB,CG8582-RC,CG8582-RD,CG8582-RE,	FBgn0035772,	Sh3beta,	1	.
CG8841-RC	GGAGGTCAAGCTCTTCGAGATTCAGCGCGTCTAGGTCAGTAAGTGGACTCCCAGCTACACCAGCAG	66	-	chr2R	8210789	8210855	8210789..8210855	CG8841-RC,CG8841-RA,CG8841-RB,	FBgn0033713,	CG8841,	1	.
CG17136-RA	GGCCGTATTTTCTGTAGGAATTCCTATGTCGATTGCGATCCAAGTAAATTTACTTCAGATGACAATATA	69	+	chr3R	6612025	6612094	6612025..6612094	CG17136-RA,CG17136-RD,	FBgn0260944,	Rbp1,	1	.
CG7175-RA	CGGTGGTCAACAAGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCGATGTGAAGGTGGCGG	69	.	.	.	.	.	CR41501-RC,CG7175-RA,	FBgn0085786,FBgn0038584,	CR41501,CG7175,	2	.
CG10336-RB	GGCATCCCTGTTCGGAGATGATGGTGTGGATGACCTATTCAATGACAACATTCCGACTGACCCGGATCA	69	+	chr2L	18689795	18689864	18689795..18689864	CG10336-RA,CG10336-RC,	FBgn0032698,	CG10336,	1	.
CG11206-RA	ATATATGGTAAATACAAACGCACTCCCCAAAAAAAACCCTCGCACAACCAAAGAAAGTCAGTCAGCCT	68	-	chr2R	18221133	18221201	18221133..18221201	CG11206-RA,CG11206-RB,CG11206-RC,	FBgn0034720,	Liprin-gamma,	1	.
CG3711-RA	TGGCCTTGCCAACAATCGGCTTCACGCATTCTGCAAATACTCTCTTGAGCACAACATTACGTTCGAGAA	69	-	chrX	818457	818526	818457..818526	CG3711-RA,	FBgn0040344,	CG3711,	1	.
CG4585-RA	ATCCGCTTTGCCATGTGACCGTGAAGGCCATTCTGTTGGACCACACCAACCACTACCTGTTCGCC	65	-	chr2R	19751493	19751558	19751493..19751558	CG4585-RA,	FBgn0025335,	CG4585,	1	.
CG32531-RA	TTACGTCACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGCGCCACCTC	65	-	chrX	19373507	19373572	19373507..19373572	CG32531-RA,	FBgn0044030,	mRpS14,	1	.
CG1116-RC	CCACAACATCCGGTACTTCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACGC	68	+	chr3R	1045969	1046037	1045969..1046037	CG1116-RB,CG1116-RA,	FBgn0037297,	CG1116,	1	.
CG7826-RA	CCCACGAAACACACGAAAACTCACTCACCTGCGGTTCTTACTGATTAGTCACTTCGAGCTCTCACCGCC	69	-	chrX	17757018	17757087	17757018..17757087	CG42273-RE,CG42273-RH,	FBgn0259168,	mnb,	1	.
CG4703-RA	CGGGCTCCATTCTAAAGGAATATGCTAGTTAAGATCAAAGTTATATATCCGTACTACTTGTGTCTCGTT	69	+	chr3R	15704940	15705009	15704940..15705009	CG4703-RA,	FBgn0038742,	Arc42,	1	.
CG4898-RE	CTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGATGAAGTTCAACATCATCCGCAACGAGCTG	69	+	chr3R	11115062	11115131	11115062..11115131	CG4898-RE,CG4898-RI,CG4898-RC,CG4898-RH,	FBgn0003721,	Tm1,	1	.
CG32491-RZ	AGACTGAGTGTCCCGAGCCTAGTTAGGATGGGTAAGTAGCCTGTTCATCTGGGATCTCAAAGTACCATT	69	+	chr3R	17187646	17187715	17187646..17187715	CG32491-RZ,CG42770-RA,CG42769-RA,	FBgn0002781,FBgn0261838,FBgn0261837,	mod(mdg4),pre-mod(mdg4)-Z,pre-mod(mdg4)-T,	3	.
CG9452-RA	ATCGCTGAAACCGAGCCCTACGAACAAATGTTCCGCGAGCTGACAAATCTGACTGGAAAGGCGATCC	67	-	chr3L	19495234	19495301	19495234..19495301	CG9452-RA,	FBgn0036877,	CG9452,	1	.
CG9106-RA	TCGATGGTATCGTCTATCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGGA	67	-	chrX	15165528	15165595	15165528..15165595	CG9106-RA,CG9106-RB,	FBgn0030624,	CG9106,	1	.
CG15162-RA	GCCTCGAAGCCACAACCCAACACAACCACGAAGAAATCCAGGAAAAACCAACCCTTAGTTCGTATGGCT	69	+	chr2L	18661109	18661178	18661109..18661178	CG15162-RA,	FBgn0032694,	MESR3,	1	.
CG8203-RA	TAGCTGACTTTGGTCTCGCTAGAGCCTTTGGCATTCCCGTGAAGTGCTACTCCGCAGAAGTGGTG	65	-	chr2R	11458094	11458159	11458094..11458159	CG8203-RA,	FBgn0013762,	Cdk5,	1	.
CG2663-RA	AGAACCCATTGCTAATCTATCGTATATCACCAGTACATTGCAGTAATTACAATAATAAAGAACCAGCGT	69	-	chr3R	1226321	1226390	1226321..1226390	CG2663-RA,CG2663-RB,	FBgn0037323,	CG2663,	1	.
CG15658-RA	ATTACCTACCATTTATGCGTTAGTTTAGCCTTAGGACAACCGTCTACCTAGCAAACTGCCTTGAATCCT	69	+	chr2R	17086696	17086765	17086696..17086765	CG15658-RA,	FBgn0034602,	CG15658,	1	.
CG4620-RB	AGTGGAAGGAGCGCTATGACCTAGCACAGATACAGCTAAATTTGCCAGCAGAGCTTCGGGACTTGTCCA	69	-	chr3R	18979938	18980007	18979938..18980007	CG4620-RA,CG4620-RB,CG4620-RC,CG4620-RD,CG4620-RE,	FBgn0004395,	unk,	1	.
CG9163-RA	GAAAGACCACAACGCTCAAGTACGACCCGCCCTATTCGAAGAAGCCAATTGCCAAGAGCTACGGC	65	-	chrX	15848410	15848475	15848410..15848475	CG42252-RD,CG42252-RE,CG42252-RF,CG42252-RG,	FBgn0259110,	mmd,	1	.
CG9013-RA	GATCGCGGTCCTGCTTGCTGGATCACTTAGCAGCCCCTATAGCGCCTACAAGGGTTTCCTAAACC	65	-	chr2R	12835406	12835471	12835406..12835471	CG9013-RA,	FBgn0262513,	Vha16-4,	1	.
CG4942-RA	ACACGCTTGCAGAACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGTGATGGTTCCAGTAGCCTGT	69	+	chr3L	9067134	9067203	9067134..9067203	CG4942-RA,	FBgn0035960,	CG4942,	1	.
CG10110-RA	CCAGAAACCTGGGAAATTGTGCCAGATGCATCAATTACCTTTGAGCCCTGGGAACACGTCACCGC	65	-	chr2R	10387341	10387406	10387341..10387406	CG10110-RB,CG10110-RA,	FBgn0024698,	Cpsf160,	1	.
CG8431-RA	GAGGCCGCTTTTAATGAGTCGGAGTGGGTTAAGTACTTCCTGCACACGGGTCACCTCACCATAGC	65	+	chr2R	12031981	12032046	12031981..12032046	CG8431-RA,	FBgn0027091,	Aats-cys,	1	.
CG4464-RB	ACTTCTATTGTAAGCGCTTTTTGTTTGCACGAGAGAGATGAGAAAATAAAACCAACCACAATTTG	65	+	chrX	16532879	16532944	16532879..16532944	CG4464-RB,CG4464-RC,CG4464-RA,	FBgn0010412,	RpS19a,	1	.
CG33122-RA	CCGCCCAGGTTACCATGACAAACACGTCTGTGACAACACGAGTTCGCAATGTACTAGAGGTGGTCCACT	69	-	chr2L	3709294	3709363	3709294..3709363	CG33122-RA,	FBgn0015376,	cutlet,	1	.
CG9111-RA	GGGTCAAAATCAGTTTAGAAGCAGTCATCGATGGACGGCAACCATCCGCTGCAGTAGTGCCAGGT	65	+	chr3L	1210740	1210805	1210740..1210805	CG9111-RA,CG9118-RA	FBgn0004426,FBgn0004427	LysC,LysD	2	.
CG10972-RA	AGGCCACCTCCATTTTGAAGGTTCCTTTTCCGGCAATAACCATATGCAATATGAACCAGGTGCAGAGGA	69	+	chr2R	18315304	18315373	18315304..18315373	CG10972-RA,	FBgn0034730,	ppk12,	1	.
CG31152-RA	GGAGGTGCAGAAGATGACGGACTTTGCAGTGCCGATCAAAAATCCTGTGCACAAAGTGAACCCGACCAA	69	-	chr3R	18576126	18576195	18576126..18576195	CG31152-RA,	FBgn0086253,	rumi,	1	.
CG8355-RC	CCGCTGTCCAGACGACTATACGGGCAAGTACTGTGAAGGCCACAACATGATCTCGATGATGTATCCACA	69	-	chr2R	11762737	11762806	11762737..11762806	CG8355-RA,CG8355-RC,CG8355-RB,CG8355-RD,CG8355-RE,	FBgn0003425,	sli,	1	.
CG4979-RA	TCCCGGTAAGTGCGAAGTGTCCATTTCGGATGTAATCCAAGGCATGATTACCACTGAGGCTGGCGTCAT	69	+	chr3R	11911630	11911699	11911630..11911699	CG4979-RA,	FBgn0038398,	sxe2,	1	.
CG5804-RA	CCGCCTACGTCGCCCTGTACGAGAAGTACAACCCCATCTACGGATAAGCTACAGTTTATGGCCCACTCT	69	-	chr3L	8781278	8781347	8781278..8781347	CG5804-RA,	FBgn0035926,	CG5804,	1	.
CG15117-RA	GCTTCCCGGAAGATCTCTTCACCTACATCGCCGATCTGATATCCTAATGGTTGGGAGCCAGTTGATGGT	69	-	chr2R	15009929	15009998	15009929..15009998	CG15117-RB,CG15117-RA,CG15117-RC,	FBgn0034417,	CG15117,	1	.
CG32226-RA	ACCTACTATGTGTACGAAAATCAACGTTGGAATCCAATCAGTGGTTTCACGGCGAAGAGCCTGCC	65	-	chr3L	20291601	20291666	20291601..20291666	CG32226-RA,	FBgn0052226,	CG32226,	1	.
CG11076-RA	GGCACTGGGCTATTTGAGATCTATGGGTCCCTATGCCCTCCGGAAAATTCCCTTTGTCGGCTATGTGGT	69	-	chr4	1051083	1051152	1051083..1051152	CG11076-RB,CG11076-RA,	FBgn0039929,	CG11076,	1	.
CG17665-RA	GTCAACGCTATGAAGAAAAACTGTCTGAAATCATTGCTTCCCTGCTTACATCAAAATACCCCAGTTCAT	69	-	chr2R	123985	124054	123985..124054	CG17665-RB,CG17665-RA,	FBgn0262117,	CG17665,	1	.
CG4143-RB	CGGACTGGGACTCTGTGACTGTTCTTCGGAAGAAAGCACCGAAATCGTCGACCCTCAAGACGGAA	65	+	chr3L	16567956	16568021	16567956..16568021	CG4143-RD,CG4143-RA,CG4143-RB,CG4143-RC,	FBgn0262732,	mbf1,	1	.
CG33094-RB	AGCCTGCCCCAAATCTACGAGGAGTTCTCCCACACGATCAACAATGCAGACCAGCAGAAAGACCTAAAA	69	+	chr3R	16664044	16664113	16664044..16664113	CG33094-RB,	FBgn0053094,	Synd,	1	.
CG8297-RA	AGTGCCCTCCAGTATTTCGGGCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCGGGG	65	+	chr2R	11822529	11822594	11822529..11822594	CG8297-RA,	FBgn0034050,	CG8297,	1	.
CG6244-RA	TGCCCATTCTTTTCGATTGTCCATTCTGCAATCACAAGCAGTCATGTGAAGCGAAACTAGATAAGGCGA	69	+	chr3L	15801575	15801697	15801575..15801633,15801686..15801697	CG6244-RA,	FBgn0036531,	CG6244,	1	.
CG7879-RA	TTTTCCCTCGAGCACCTACGAATCGAGCATATCGAACAGCTTTTCAATGAACGCAACCAGAGCTCCGGC	69	-	chr3L	1560914	1560983	1560914..1560983	CG7879-RA,CG7879-RB,	FBgn0035235,	CG7879,	1	.
CG12348-RA	TTACCGGATAATGAGAAACAGAGAAAAGTCTGGCTGCTCTTCGAGTATCCAGAAAGTTCGCAAGCCGCC	69	-	chrX	17845537	17845606	17845537..17845606	CG12348-RD,CG12348-RC,CG12348-RE,CG12348-RB,CG12348-RF,CG12348-RA,CG12348-RH,CG12348-RI,CG12348-RJ,CG12348-RK,CG12348-RL,	FBgn0003380,	Sh,	1	.
CG12868-RA	CCTAAAGTGGTTTACGACGGGAAATCTCCTGGAAGCCCCACCTAAAAGCCACTTCAACGACGAGCGA	67	-	chr2R	10492236	10492303	10492236..10492303	CG12868-RB,	FBgn0033945,	CG12868,	1	.
CG8414-RA	GCGCCCAGCTAGACAGGATTAAGACCAGCTTTCAGCGTCAGACGAATGCAATAGTACTGCTCCACCGAA	69	-	chr2R	11988215	11988284	11988215..11988284	CG8414-RA,	FBgn0034073,	CG8414,	1	.
CG32468-RA	GCCGCCATTTGAGAGAGCTCAACATATTCAAAGTTGTGCACGAGCGCGATTCCAATTTCATTTTGTGCT	69	-	chr3R	3139240	3139309	3139240..3139309				0	no match
CG31849-RA	CCCTTCTGTGTTTTTGGCCAGGTGAATTCCAAATTTAGTATCTCAGCAGACAGGACAGACAGACCCGCC	69	-	chr2L	13180761	13180830	13180761..13180830	CG31849-RA,	FBgn0051849,	CG31849,	1	.
CG10436-RA	AAAGATGGCTGTGATACCGCTTATGAAACCGTCAAGTGCTACATTGCTGTAAACGGAAAATTCAT	65	+	chr3L	12389897	12389962	12389897..12389962	CG10436-RA,	FBgn0011279,	Pbprp1,	1	.
CG4661-RA	TGCTGCCTAATGCTAGGGATCAAGACACGATTGGCTAGTGAGCGCCAAACTTTGGATAACCACTGTCCG	69	-	chrX	12749961	12750030	12749961..12750030	CG4661-RA,	FBgn0030429,	CG4661,	1	.
CG11620-RA	CGTGCTGGAGATCCCTTTCGACAATACCAAGCCATTGCCTCAAGACCGATCATTATGCTCGCAGCCTC	68	-	chr2L	151530	151598	151530..151598	CG42399-RB,	FBgn0259818,	CG42399,	1	.
CG12303-RA	ATGAAGGACGATGCCTATCGCCATGGAATTCAAAGTGGTTTGCTAAATTTGGCATTTCGTGATCGGCAT	69	-	chr3L	10423514	10423583	10423514..10423583	CG12303-RA,	FBgn0036083,	Ir67b,	1	.
CG7912-RA	CCCCCTTTTCACACGGAGGATCCAGAGACTGGAGAAACCATTAGCTTCGGTGGCATGGTATCGAACGTA	69	-	chr3R	25832936	25833005	25832936..25833005	CG7912-RA,	FBgn0039736,	CG7912,	1	.
CG2328-RA	CGCACAGTCAACAACTAACTGCCTTCGTTAATATCCTCTGAATAAGCCAACTTTGAATCACAAGACGCA	69	+	chr2R	5866842	5866911	5866842..5866911	CG2328-RA,	FBgn0000606,	eve,	1	.
CG8942-RA	GCGATCCGGGTTATCGCTTCAAGGACAACTCCCATCACGAATGCGATCCTATTTGCGACAGTGGCT	66	-	chr2L	13974945	13975011	13974945..13975011	CG8942-RA,	FBgn0259896,	nimC1,	1	.
CG1225-RA	TTGGCTTGGATTTATCGCGTGGTATAACTTGGGCTTATTTACGTTTTGAGAACTTCCAAACCGAAACCA	69	+	chr3L	304990	305059	304990..305059	CG42378-RA,	FBgn0259743,	RhoGEF3,	1	.
CG15599-RA	AGCGTGCCGAAAAAGCAAAGGAAAAGGCCAAGAACTCGAATGGGAAAAACGCGTTGGCTATTCAATCCA	69	-	chrX	15580145	15580214	15580145..15580214	CG15599-RB,	FBgn0030667,	CG15599,	1	.
CG7870-RA	TAAAATTCTTGGAATTAAATACGTGGCTCTGTTTATCTCGCACAAATTGGAGAAGTAATGTCTGCTGGC	69	-	chr2L	8302875	8302944	8302875..8302944	CG7870-RA,	FBgn0261020,	wol,	1	.
CG18508-RA	TCCAAGAAGGAGATCTAGTCGAAATGTTCCAAATATTGTAATTTAACACATAGTACATTTTTTTT	65	-	chrX	3066665	3066730	3066665..3066730	CG18508-RA,	FBgn0028746,	CG18508,	1	.
CG17173-RA	CGCTCAACCTGATCGCCACTCATCGAAACTCGCTGTTGAAGCATAATCTCGACCTGGTAGAGGGGGAAA	69	-	chr3L	14761252	14761321	14761252..14761321	CG17173-RA,	FBgn0036447,	CG17173,	1	.
CG31762-RB	TGTTCTTTGCAAAGTTTCGCCATTTATTTCATTTTTGGAAATGCGATGTCAAGTGGTAGCTGATGCAAG	69	+	chr2L	12312382	12312451	12312382..12312451	CG31762-RB,CG31762-RA,CG31762-RC,	FBgn0000114,	aret,	1	.
CG3817-RA	GCGGGAAGCGCGCCAAATCCACACCCGTAGATAACGCTGTAAAGAAAGAGGAACAAGAAACGGATGACG	69	+	chr3R	10725069	10725138	10725069..10725138	CG3817-RA,	FBgn0038275,	CG3817,	1	.
CG3760-RB	ACATGCAGATTTTCTAGGCTTTTTGATTCATATAAACCACCACTGCTACTCTTACCCTAAACCACAAAC	69	+	chr2R	20827149	20827218	20827149..20827218	CG3760-RB,	FBgn0022343,	CG3760,	1	.
CG13936-RA	TGCCAGGACATCCCCTCAAGGATCACAACACCAAGAAGAACGTTCAGTATATGTCGCCTTGCCACTTCA	69	-	chr3L	1851397	1851709	1851397..1851418,1851661..1851709				0	no match
CG14814-RB	CCCCCCAAAATCCACTAAGCAGATTCCAAAACCTAGGAAGCAGAAGGATCTCTCACCCGTTGCGA	65	-	chrX	1757288	1757353	1757288..1757353	CG14814-RB,CG14814-RA,	FBgn0023515,	CG14814,	1	.
CG2714-RB	GCACACTCGTTCCGCACTACTCTAATTGGTTTCTAGCGCGTAAGTTCAATGCAGCATAGTAGCTTAGCT	69	-	chrX	2628596	2628665	2628596..2628665	CG2714-RB,CG2714-RA,	FBgn0000376,	crm,	1	.
CG8988-RA	TTCTGCCTGCCGTTAGCATACACGGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCG	65	-	chr2R	7730756	7730821	7730756..7730821	CG8988-RA,	FBgn0033656,	S2P,	1	.
CG18290-RB	TCCATACCCAATCCGAATACCGAAAGCCCACTTCTCACTTCTCCTTCTAAAAACCGCCTCCGTTC	65	+	chr3R	9252224	9252289	9252224..9252289	CG18290-RB,	FBgn0000046,	Act87E,	1	.
CG15178-RA	CGATTTGCTTTCGAGGTCTATGATACCAAAGGCACTGGCGTTATTGATCGCGAGCAAGTTGGCACGGCT	69	-	chr3R	2453008	2453130	2453008..2453062,2453115..2453130	CG15178-RA,	FBgn0037460,	sowi,	1	.
CG13415-RA	GCCGCTCTTCAACAAGAAGTTCGAGTCGAAGCCGATTCCAGTGCGTCAGGGACGTTGCAATATAGGACA	69	+	chr3R	17694047	17694116	17694047..17694116	CG13415-RB,	FBgn0067317,	Cby,	1	.
CG7749-RA	TGGGACTGTTCCGACTGGGTTCGCAAAAGCCATAATCCCTTGCCAGATATAACCGAAGTTCCTGGAGCA	69	+	chr3L	20016347	20016416	20016347..20016416	CG7749-RA,CG7749-RB,	FBgn0261574,	kug,	1	.
CG16940-RA	AATAGGGTGCTATGGCTGCACGACATTGCAAGCTCCATCCGTAAGACACGTTTAGACAATGGCGCACTC	69	+	chr3L	215011	215080	215011..215080	CG16940-RB,CG16940-RC,CG16940-RA,	FBgn0035111,	CG16940,	1	.
CG4278-RA	TCAGCTATCATCCGCCAATTTTCAAGCCCCTGACCAGGATTACGCAGTCACATTGGAAGGAGCGC	65	+	chr2L	16327373	16327438	16327373..16327438	CG4278-RA,	FBgn0014092,	CG4278,	1	.
CG15262-RA	TGGAGCGCACTCTATCCAAGGAAGAGCTGTATGTGACGTACGGATACCATCCCCAGATGTCGGGTATTT	69	+	chr2L	15299192	15299261	15299192..15299261	CG15262-RA,	FBgn0028852,	CG15262,	1	.
CG17028-RA	TCACCGTGTACGACAAGCAAATAGAAGCCACTCTAACAGATGGTTTGCTAAAGACCTTTCCGGAATCCA	69	+	chr3L	15971787	15971856	15971787..15971856	CG17028-RA,CG17028-RB,	FBgn0036552,	CG17028,	1	.
CG8539-RA	CCCACAGTAACCGGGTGACCCTAAAGGATGTGGCTCGGACCTACGAGAACAGAGCCCTGAAAATG	65	-	chr3L	7491508	7491573	7491508..7491573	CG8539-RA,	FBgn0035791,	CG8539,	1	.
CG4303-RA	TGAGCTGATCATCTCCACCAGCCAATTCGTGGAGTCCACCGTCAAGAGACCTCCATAAACCGTGC	65	-	chrX	13051657	13051722	13051657..13051722	CG4303-RA,	FBgn0025463,	Bap60,	1	.
CG3831-RA	ACCAGATACGGGTTCGTCCATTTGTTTACCACAATACCTCAGCGGAAGATCTCAACTCGACGTTGCTGT	69	-	chr2R	18826709	18826778	18826709..18826778	CG3831-RA,	FBgn0034804,	CG3831,	1	.
CG31288-RA	AGCAGCTATCTGCCGGACGGAACTCTCGAGAAGCTGATACTAATCGACTTCCAGATTGTCATGTGGGGT	69	-	chr3R	21124185	21124254	21124185..21124254	CG31288-RA,	FBgn0051288,	CG31288,	1	.
CG12950-RA	ACACCCATTACGGAACTGGACTACGGAACCCTTTTGTGTTTGGCGTCGAACAAAATTGGCAAACAGCGA	69	-	chr3R	5562285	5562354	5562285..5562354	CG12950-RA,	FBgn0037736,	CG12950,	1	.
CG5860-RA	GCCTGGGAGTCTTGTCCTGGTCCAATACGACACCATTTCTGGAACTTCTGTGCGCACAACGATTGCTTG	69	+	chr3R	13235866	13235935	13235866..13235935	CG5860-RA,	FBgn0038506,	CG5860,	1	.
CG2818-RA	CCAAGGGCCATCGACCTCTGGGAATGATGCGTCTTGGTTATCTTATCGTGAAGCCCTCATCGCTGTGTG	69	+	chr2L	3715232	3715301	3715232..3715301	CG2818-RA,CG2818-RB,	FBgn0031566,	CG2818,	1	.
CG10200-RB	ATTCCAACGGCGTTCTCAATATCAAGAAGACCGAATCCACTTACTCATCCAAATAGAACATAGGTTTTT	69	+	chr2R	10697332	10697401	10697332..10697401	CG10200-RB,CG10200-RA,	FBgn0033968,	CG10200,	1	.
CG18550-RA	TTGAGATTCCGCAGAGCATAGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGC	65	-	chr3R	8817984	8818049	8817984..8818049	CG18550-RA,	FBgn0041710,	yellow-f,	1	.
CG33082-RA	CACGCATGAACTACCTGTTCCAGGCCTCGAATTTAATGGCAGTAGGCAATCAACCAAAATTGGCCGCCT	69	+	chrX	924924	924993	924924..924993	CG33082-RA,	FBgn0053082,	CG33082,	1	.
CG2650-RA	CGGAAAAATGCAGCTAACCGGTGCCTCTATGTTCCTCGTATGGGTGGGTCTACTCAGCTGGGTTTCCTG	69	-	chrX	2587791	2587860	2587791..2587860	CG2650-RA,	FBgn0000092,	CG2650,	1	.
CG13922-RA	AGCGTCTCCCTGTGGTGTCCAAGTCCCTTAATCCGCTGGAAAAACAGTTCCAAGACTTGCTATGGCG	67	+	chr3L	1777618	1777685	1777618..1777685	CG13922-RA,	FBgn0035272,	mRpL46,	1	.
CG32458-RA	CGGCGGCAAACCATTAACAACCCATACGAACATATCCAAAGCCACCCATATGCAAGACCTGGCGACGTT	69	+	chr3L	23026680	23026749	23026680..23026749	CG43079-RE,	FBgn0262509,	nrm,	1	.
CG12938-RA	GCACCCCTTTGATCACTTTATGGTGCGGAATCGAATGATACGGCAGATCCACATACCTTCGTACTTGGA	69	-	chr2R	6708852	6708921	6708852..6708921	CG12938-RA,	FBgn0033554,	Lsm10,	1	.
CG6369-RA	AGCAGCCGTTGGAATCAAGCTTCACTGTCGAGCACCTAAACGCAGCGATGAAGAACGCATTGGAAAACT	69	-	chr3R	20856549	20856618	20856549..20856618	CG6369-RA,	FBgn0039260,	Smg6,	1	.
CG6764-RA	TCCGTCGTAAATTGCGAAAATGCGCATTCAAACGTGCTATTTTTGCTCTAGCAAAATATACCCGGGCCA	69	-	chr3R	7257161	7257230	7257161..7257230	CG6764-RA,	FBgn0037899,	RpL24-like,	1	.
CG16973-RA	TTTGCTCAACCGGCAACAAAATCAACCCATAAACATTTTCTTCTTATTTTACCACAAAAGGCAAACGAA	69	-	chr3L	2556393	2556462	2556393..2556462	CG16973-RE,CG16973-RA,CG16973-RB,CG16973-RD,CG16973-RC,	FBgn0010909,	msn,	1	.
CG41135-RA	GAGTGCCGCTCGAGTCCGTCTTTGCAATTACGAGATCATCATGGCCCGGGGGGTACGAGATCGGC	65	-	chr3RHet	21029	21094	21029..21094				0	no match
CG32506-RA	CAATCACCTGACTGTGAAACCCATTCCGAGAGCCATGAAGACCAGCACGGATTCGGGTCACGTGG	65	+	chrX	20334694	20334759	20334694..20334759	CG32506-RC,	FBgn0052506,	CG32506,	1	.
CG14064-RA	CACTGCCTGAAGGACCTGAAGATATTTGTACCAGAGGCCGTATTAATGGGAAATGCAGCGACATTGTCT	69	+	chr3R	24289438	24289507	24289438..24289507	CG14064-RA,	FBgn0039584,	beat-VI,	1	.
CG13403-RA	GCGTCCATCCGGTGCATACACAGCTACAGGAATTCCAATCCTCTCAAGCAACACACCGAGCTTACCC	67	-	chrX	14085927	14085994	14085927..14085994	CG13403-RA,	FBgn0030544,	CG13403,	1	.
CG12213-RA	ACACGGAACACGCACTGCAGGAGAAGTTCGACGCTCAGGTGGAAAAGTACAAGCTGCTGGAGATTAAGT	69	-	chr3R	7792661	7792730	7792661..7792730	CG12213-RA,CG12213-RB,CG12213-RC,	FBgn0260742,	CG12213,	1	.
CG2505-RA	TGCGGCGACTAAAGCAACTCTACTTCAACAACGAGATGCAGGAATCGATGGAGATGTTCGAGGCCCTGA	69	+	chr3R	3370270	3370339	3370270..3370339	CG2505-RA,	FBgn0015570,	alpha-Est2,	1	.
CG8230-RA	ATAGCGCAGTGTTTGTGAACGTCTCGACGACCCCGGAAGACATGCTACAAGATCTGAGCGTGCTG	65	-	chr2R	4832976	4833041	4832976..4833041	CG8230-RA,	FBgn0027607,	CG8230,	1	.
CG12209-RA	TCTCCGTTAGAGGGCAGTTGGGTTCAGACGACACCGATTAATGGGGATGACGTCGTGGAAGACAATGA	68	-	chr2R	6133906	6133974	6133906..6133974	CG12209-RA,	FBgn0033498,	CG12209,	1	.
CG10663-RA	TCCGAGGGGGAATTTCGTAATATCACCTGGATGCAGCCAGCAAAGGATGGAATAGCTCTCAGGCGACG	68	-	chr3L	12469615	12469683	12469615..12469683	CG10663-RB,	FBgn0036287,	CG10663,	1	.
CG7678-RA	GCCTGCTGGACCAGTGGAGGAAGTGGACGAGATCGTAGAGAAGATAGAGGTGACAACTGGCAAGGAGAT	69	-	chr3R	14213166	14213235	14213166..14213235	CG7678-RA,	FBgn0038613,	Vha100-4,	1	.
CG1024-RA	GCACTAGCGGCTCCTGTAAACGAACCTAAGCCCATTTCAAATGTCAGCGAGCTGAATCTAGATCGGTGT	69	-	chr3R	2205151	2205220	2205151..2205220	CG1024-RB,	FBgn0027514,	CG1024,	1	.
CG13280-RA	TAGGGTGTGTCATAACACTAATTTCATGATCGGATTATGATGTTTTTAAAGAAATCGACAATGCTCAAC	69	-	chr2L	16802052	16802121	16802052..16802121	CG13280-RA,	FBgn0032609,	CG13280,	1	.
CG8295-RB	TTTTACTAACTATCCGATAAAACAGAAACAGAATTGCATACTATAAATTTCTGCTAATTACATTCCCAA	69	-	chr2R	11825669	11825738	11825669..11825738	CG8295-RB,	FBgn0034051,	Mlf,	1	.
CG7280-RA	CCAACGCGTATCACAAAGTCAAAGTGAAGATTATCTGAAGGGGAGATTTCTGGCAATACTCAAGATAGA	69	-	chrX	18740505	18740574	18740505..18740574	CG7280-RA,	FBgn0030966,	CG7280,	1	.
CG3242-RA	CCTTAGCTACTTTGGTTTAAGCCTTGGATATTTGTGACGTAAGCATAGCAGGAAAGTTTGACTTTGCGT	69	-	chr2L	3578085	3578154	3578085..3578154	CG3242-RA,	FBgn0004892,	sob,	1	.
CG14678-RA	CGGATACGGAAATCAAATGGACGCAGAATAATCGGCCCTTCAAACGTGGCTTGTTGTCAACCAGC	65	-	chr3R	1712435	1712640	1712435..1712447,1712587..1712640	CG34113-RO,CG34113-RP,	FBgn0083949,	CG34113,	1	.
CR30224-RA	CCGAGTGGTTAAGGCGTCTGACTCGAAATCAGATTCCCTCTGGGAGCGTAGGTTCGAATCCTACCGG	67	.	.	.	.	.	CR32623-RA,CR32608-RA,CR30224-RA,CR32621-RA,	FBgn0011976,FBgn0011977,FBgn0028981,FBgn0011975,	tRNA:S4:12Eb,tRNA:S4:12Ee,tRNA:S4:56D,tRNA:S4:12Ea,	4	.
CG12896-RA	CCACTGAGAACTATTAAAGACCTACATACCTGCATGTATTTTTCTTCCTGTTGTGCCATAAAAAGTTAA	69	.	.	.	.	.	CG12896-RA,CG12405-RA,	FBgn0033521,FBgn0033520,	CG12896,Prx2540-1,	2	.
CG12879-RA	TGCCTATAAAAGTCAGCATTTGTACACACGTCCTACCAAAATGAGGCTGGTCATCATCTACGCGGCCAT	69	+	chr3R	23519999	23520068	23519999..23520068				0	no match
CG2358-RA	GGCAACTCGGCCTAAACATACGTGTCGGAAATTTTCTGTCTTCGTGGACGAAGCCGAGAAGTTTTGTTA	69	+	chr3R	2483615	2483684	2483615..2483684	CG2358-RA,	FBgn0262801,	twr,	1	.
CG8311-RA	GGCCTGGCCTAAATAGAATGCATATTTATGTAAATTAGTTTTAGTGTACGCATTCCTCGGTGTATTTAT	69	-	chr2R	12474741	12474810	12474741..12474810	CG8311-RA,	FBgn0034141,	CG8311,	1	.
CG1399-RA	TGGCTGGCTACTTCGCTTGGTTGATTTCGGTGCTCATCCTGTGCGTCTAACATTCGCATTTGCTGCATA	69	-	chr2R	3565374	3565443	3565374..3565443	CG1399-RB,CG1399-RA,CG1399-RC,	FBgn0033212,	CG1399,	1	.
CG5032-RA	AGTGCCTGTCTATGGCGGTTCCTACACAGAAAGGGAGTCCTTGAAACACGGTGACCTTCTCAAGCAGAT	69	+	chr2R	13675116	13675185	13675116..13675185	CG5032-RA,	FBgn0026309,	aft,	1	.
CG4629-RA	CGCTGGGTCTTTGAGTTCCCCGAGAGGAAAGGCAAACTGGGTGTGTCGCTTTTGAAAGGAATCTAAGGT	69	-	chr2L	1083903	1083972	1083903..1083972	CG4629-RA,CG4629-RB,CG4629-RC,CG4629-RD,	FBgn0031299,	CG4629,	1	.
CG10263-RD	AGTGAACAAGTGTATGTTAAGCTGAACTGAACACTATTAAAGATATTTTACGGGGTTAGGCCAAC	65	-	chr2L	19580643	19580708	19580643..19580708	CG10263-RA,CG10263-RD,CG10263-RC,	FBgn0032812,	Hakai,	1	.
CG5849-RA	GCCCGACTTTTCGACGAGTTTACGTGGAACAAGGTGTAAATTTAGCTGAAGATGGGATGTTCCGTGGGA	69	+	chr3R	17569146	17569215	17569146..17569215	CG5849-RA,CG5849-RB,	FBgn0038897,	CG5849,	1	.
CG5812-RA	CCACCTGGAAAGTCCGGACCCTACTAAATGGATCTTCAACCCATCGTGAACTCAAAATTGCGAACTTCG	69	+	chr3R	22876143	22876212	22876143..22876212	CG5812-RA,	FBgn0029170,	TwdlT,	1	.
CG15224-RB	CAAGCGGAAAGCAAAACAATGGCAGAAGGATCCCTTTTCCATGATGTGCACACACTGTTATCCAACCGA	69	+	chrX	11691091	11691160	11691091..11691160	CG15224-RB,CG15224-RH,	FBgn0000259,	CkIIbeta,	1	.
CG14797-RA	CTTCCTGGACCGAGGAAAAGCCCTCAAAGTTGCAGACCCTATTCCAGATCAGCATTACGGCCCTG	65	+	chrX	1578169	1578234	1578169..1578234	CG14797-RB,CG14797-RC,	FBgn0029587,	CG14797,	1	.
CG6297-RB	GGCCCGCATTTGGTCAGTTTTTAAGAGCACCCCACTTAAACCCTCCGCTGACATAAACTTTTAAACCCT	69	-	chr3L	11072463	11072532	11072463..11072532	CG6297-RB,CG6297-RA,	FBgn0020412,	JIL-1,	1	.
CG11033-RA	ACCCAGTCGGTGATTCGCTTTGCAAGCAACTCCAAGCATGATCTTTGCGTCAGAGACATCAAGCTGGTA	69	+	chr3R	4887803	4887872	4887803..4887872	CG11033-RB,	FBgn0037659,	Kdm2,	1	.
CG7921-RA	ACGAATACTAGCGATAGACCATACACATACATACATATGTACTAACTCGTATCCCCAGATTGTGCCGAA	69	-	chr3R	25841575	25841644	25841575..25841644	CG7921-RA,CG7921-RB,	FBgn0039738,	Mgat2,	1	.
CG1572-RA	TGGTGCTTCCATTGTGGGAATTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATGGCCAGCA	69	-	chrX	11450070	11450139	11450070..11450139	CG1572-RA,CG1572-RB,	FBgn0030309,	CG1572,	1	.
CG7163-RA	TCGACTAGTGCCCTCCGTCAAAGAGCTCCAGTCACTCTGTCCACCGGTTATTTTGTCGGGCGTTAACTA	69	-	chr3L	8396708	8396777	8396708..8396777	CG7163-RA,CG7163-RB,	FBgn0035889,	mkg-p,	1	.
CG1028-RI	GTTGAACTTCGCGTGAACAAACCTAAACTAAACTAAACAAAGAGCAGAGCTGAGAACTCTACCTACAAC	69	-	chr3R	2723822	2723891	2723822..2723891	CG1028-RM,CG1028-RD,CG1028-RG,CG1028-RE,CG1028-RN,CG1028-RL,CG1028-RF,CG1028-RI,CG1028-RJ,CG1028-RK,	FBgn0260642,	Antp,	1	.
CG17059-RA	TGATCTGTTCGATGAAGACAACTGGGCCAAGATGAAAACCGATGGGAAACAGTAGAGGCCACCACGCAA	69	+	chr2R	9108353	9108422	9108353..9108422	CG17059-RA,	FBgn0040754,	CG17059,	1	.
CG31802-RA	TGCCCTGGGATTCGAGCCGAAGAAAGAGGATATAAAGCGTATGATGGACGAAATCGATAAGGACAAGAC	69	-	chr2L	18208864	18208933	18208864..18208933	CG31802-RA,	FBgn0051802,	CG31802,	1	.
CG5958-RA	TGGTGATTGGCCCCATTTCAATACTACACTGACATTCGCATCCTACATTGACATTAGCTTAACTTTATG	69	-	chr2L	7430609	7430678	7430609..7430678	CG5958-RA,	FBgn0031913,	CG5958,	1	.
CG1603-RA	ACTGTGACTACTGCGATAAACGTTTCCACGGCGACTACAACCTACGGGTGCACATCGTCAAGGCG	65	-	chr2R	3402272	3402337	3402272..3402337	CG1603-RA,	FBgn0033185,	CG1603,	1	.
CG1692-RA	GCTCCTGGCCATTGACGGATCAAGGTTTGAAATATGACCGTGAGTGGATGATCGTGGACATGAATGGCA	69	+	chrX	20303204	20303273	20303204..20303273	CG1692-RA,	FBgn0002641,	mal,	1	.
CG4905-RA	ACCCGACCAACATACGTAATCTGCAAACACCGCAACATGTTATACGAGTATCCAATTACCAGGGGGAGT	69	+	chr2R	12445553	12445622	12445553..12445622	CG4905-RA,CG4905-RB,CG4905-RC,CG4905-RD,CG4905-RE,	FBgn0034135,	Syn2,	1	.
CG3868-RA	GCCACGCACACCTACTAGGCACTTTGTGGCCTACGAGATCCATTCTACCCATAATCTCCCCCAGATGGA	69	-	chr3L	14395670	14395739	14395670..14395739	CG3868-RA,	FBgn0036422,	CG3868,	1	.
CG33143-RB	TGGATCAACAGGGTTTCCGTTCAAGATCCTCCAAGAATCCTGGGAAACAGTTTTCATTCATGCCAGTCT	69	+	chr2R	18520721	18520790	18520721..18520790	CG33143-RC,CG33143-RB,	FBgn0053143,	CG33143,	1	.
CG11951-RA	GGCCAGTTTGTGTGTGGAGGACATCCATCCACAGTGGCGTACCCTTCAATTGGAATCAATGTCCAACCT	69	-	chr3R	25062565	25062634	25062565..25062634	CG11951-RA,CG11951-RB,	FBgn0039656,	CG11951,	1	.
CG11780-RA	GCCGGACCGAAGCTACATCCCAAATACCACTATGATAACTTCGTTGGAGGAATATTACTGGTGCGACGC	69	+	chr3R	20849656	20849725	20849656..20849725	CG11780-RA,	FBgn0039258,	beta4GalT7,	1	.
CG15348-RA	GCCCAAGACCTGCGGAAAAGTACGTGAGCTGTTCCAATACATGAACGCCTTCAACAACCTCTTGGGC	67	+	chrX	8365585	8365652	8365585..8365652	CG33962-RC,	FBgn0014464,	Cp7Fa,	1	.
CG11577-RA	AGGTCACCCAAATGAAGACCCAGTGCGAAAACCTACTGGAGGAGTACGAGGAAACCATCAGCGAATGGT	69	-	chr3L	19088737	19088806	19088737..19088806	CG11577-RA,	FBgn0036847,	CG11577,	1	.
CG7255-RB	AGAATCTCCATCGCGTGAGGACGAACAGTCGGTAATCGCAATGTTGGACGATGTCCTGAATGCCCA	66	+	chr3L	15302339	15302405	15302339..15302405	CG7255-RF,CG7255-RH,	FBgn0036493,	CG7255,	1	.
CG11902-RA	TCCTCTTATACGTGCAATATGTGCCAACTAAGATGTTTACGGAAATTCGAGCTATATCAGCACCAGCAG	69	+	chr3R	21164682	21164751	21164682..21164751	CG11902-RB,	FBgn0028647,	CG11902,	1	.
CG3889-RA	CTTTGATCATGGGCAAGCAGTACCAGCGTCATACCCGCATGCTTGTTCTTCGTGCTGCAATGCTC	65	-	chr3L	18896355	18896420	18896355..18896420	CG3889-RA,	FBgn0027057,	CSN1b,	1	.
CG2129-RA	GCGGCAAGATCTACCATGGCAAATACAGTCTGCGTCAGCATTTAAAGCGGGATCATGACAACGGCGAGG	69	+	chrX	8040696	8040765	8040696..8040765	CG2129-RA,	FBgn0030008,	CG2129,	1	.
CG14896-RA	ACCAATCAACCACCCGTGAAATCAGAGGATACACCCGACAACACAGTTTCTCTTTCGGAGCCCACAA	67	-	chr3R	12285009	12285076	12285009..12285076	CG42232-RB,	FBgn0250754,	CG42232,	1	.
CG15803-RA	CGGCACTCACGTTCCGTCGGTCATAAATACCTCGCAAAATCCGGAGGCCTTTGAGACTCGTAGCC	65	-	chr3R	14179085	14179150	14179085..14179150	CG15803-RB,	FBgn0038606,	CG15803,	1	.
CG11892-RA	TTGATGCCATTCCCAAGCTCACCGTTCCCGAGTCTCTTGTGCCGGAAGAAACTTCGGTTTTCCTG	65	+	chr3R	21107455	21107520	21107455..21107520	CG11892-RB,CG11892-RA,	FBgn0039313,	CG11892,	1	.
CG31622-RC	CGTCATGGTCACATATTGGCGTAGGTGCTTCAAAAGCGAGCTTACCACGACTGGAAACCACTTCGACCG	69	+	chr2L	21292140	21292209	21292140..21292209	CG31622-RC,	FBgn0041244,	Gr39a,	1	.
CG30157-RA	CGCGGCGTCCTTGAAAATTGTACCAAAGGACTATGCATATCCACTTCTAGAGGATCCGCAAGGCG	65	-	chr2R	2862268	2862333	2862268..2862333	CG30157-RA,	FBgn0050157,	CG30157,	1	.
CG17329-RA	AGCTCCATTCGGGTGTGAAGACACTCAATCAGCGTCTGGACAGAATGGTGGAGAATTCAACTTGCTCCA	69	+	chr2L	16291576	16291645	16291576..16291645	CG17329-RA,	FBgn0028896,	CG17329,	1	.
CG6500-RA	TGTGTGGGCGACCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTATGAGGAGCGC	66	+	chrX	18464600	18464666	18464600..18464666	CG6500-RA,CG6500-RB,CG6500-RC,	FBgn0000242,	Bx,	1	.
CG17309-RB	TTATGAAGTAAGTTTTGTAAGCCTAAGCGAAGGAACCCAACACAATCAAGCAATGTTAGTGAGTTGCGC	69	-	chr3R	7460249	7460318	7460249..7460318	CG42317-RF,CG42317-RJ,CG42317-RG,CG42317-RH,CG42317-RI,CG42317-RK,	FBgn0262081,	Csk,	1	.
CG15311-RA	CCCATGACAATGGCAATTGGTATCGCCGTATCAGTCCGGTTTTGCGAAATGGCGTTAAAAGTGATCCGC	69	+	chrX	10085519	10085588	10085519..10085588	CG15311-RA,	FBgn0030182,	CG15311,	1	.
CG1044-RA	ACCAACAAACCGCCATTGCTAAATCGATCCAGCATGAGTGTGGGGAATCTGTACTCACAAGGCGGAAAT	69	+	chr3L	2594827	2594896	2594827..2594896	CG1044-RB,CG1044-RA,	FBgn0016794,	dos,	1	.
CG9079-RA	GCGAACGCGGTGATTCTCAAGCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAG	69	-	chr2R	7139942	7140282	7139942..7139949,7140220..7140282	CG9079-RA,	FBgn0033597,	Cpr47Ea,	1	.
CG31618-RA	AAGAAGGCCTAAACGTTTCAAAGGCTAAGCTAAAAACCTACATGTACATAAAATCGTCAATCAAACCGT	69	.	.	.	.	.	CR33805-RA,CR33811-RA,CR33802-RA,CG33826-RA,CG33832-RA,CG33856-RA,CG33850-RA,CG33847-RA,CG31618-RA,CG33844-RA,CG33829-RA,CG33859-RA,CG33862-RA,CG33823-RA,CG33853-RA,CG33865-RA,CG33820-RA,CG33808-RA,CG33835-RA,CG33841-RA,CG33814-RA,CG33838-RA,CG33817-RA,	FBgn0053805,FBgn0053811,FBgn0053802,FBgn0053826,FBgn0053832,FBgn0053856,FBgn0053850,FBgn0053847,FBgn0051618,FBgn0053844,FBgn0053829,FBgn0053859,FBgn0053862,FBgn0053823,FBgn0053853,FBgn0053865,FBgn0053820,FBgn0053808,FBgn0053835,FBgn0053841,FBgn0053814,FBgn0053838,FBgn0053817,	His-Psi:CR33805,His-Psi:CR33811,His-Psi:CR33802,His2A:CG33826,His2A:CG33832,His2A:CG33856,His2A:CG33850,His2A:CG33847,His2A:CG31618,His2A:CG33844,His2A:CG33829,His2A:CG33859,His2A:CG33862,His2A:CG33823,His2A:CG33853,His2A:CG33865,His2A:CG33820,His2A:CG33808,His2A:CG33835,His2A:CG33841,His2A:CG33814,His2A:CG33838,His2A:CG33817,	23	.
CG15782-RA	GCTACTAGGTATGGAGCAGAAATGTAAATGCAACAATCATATCAAAACTATCAAACTAGCCAGCTAA	67	-	chrX	5425243	5425310	5425243..5425310				0	no match
CG11895-RA	GCGGCGATATCGGGTTCTCAGTGCGACTTTAGTTTGAGAACGTTTGTGTGCCTCGAGCTTTTTATGCCA	69	+	chr2R	6608008	6608077	6608008..6608077	CG11895-RA,CG11895-RB,CG11895-RC,CG11895-RD,	FBgn0024836,	stan,	1	.
CG31507-RA	GCCAACACCCAGGTGGATATTGCTTATGAAGTCATCGGAATTTATGATAAATACAAGGGCCAGGGGGGA	69	+	chr3R	16703677	16703746	16703677..16703746	CG31507-RA,	FBgn0044809,	TotZ,	1	.
CG32196-RA	TCCACACGATCGACAGCCTTCGCAAACGTACCTTAAAGTTTTGGTGAAAGGAGCTACGGAATCCGGAGT	69	-	chr3L	18452760	18452829	18452760..18452829	CG32196-RB,	FBgn0052196,	CG32196,	1	.
CG7398-RA	CGTTCGCGTATTTTCGTCGCTCGTTCGTAATCGTAATCGTCGTTCGTGGTATCTCGTCGGGTAAAACAA	69	+	chr3L	6191694	6191763	6191694..6191763	CG7398-RA,CG7398-RB,CG7398-RC,	FBgn0024921,	Trn,	1	.
CG10498-RB	CCGCTCCTTGTTTCCTGGAGACAGCGAGATCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACC	69	+	chr3R	16562461	16562530	16562461..16562530	CG10498-RA,CG10498-RB,CG10498-RC,	FBgn0004107,	cdc2c,	1	.
CG6004-RB	GCAGGTTTTATGTTTGTGCCAATGGACGGGCTATACCTCGACAGTGTCCCCAGGGCCTACATTTTGACA	69	-	chr3L	11760905	11760974	11760905..11760974	CG6004-RB,	FBgn0036203,	Muc68D,	1	.
CG15377-RA	TACGACATGGAGTGGTACAAATGCGATGCGAGGACTAGGAAAGTGATTTTAATGATATTGCGCCG	65	+	chr2L	2057696	2057761	2057696..2057761	CG15377-RA,	FBgn0026396,	Or22c,	1	.
CG7323-RA	AGATTATTATCCGTCGGTTAAGCTGCATGGATATGGGTGATACTGCTTTATTTGAGTTTGCGAAAAACT	69	-	chr3L	20143483	20143552	20143483..20143552	CG42348-RC,CG42348-RD,CG42674-RE,CG42674-RA,CG42674-RB,	FBgn0261556,	CG42674,	1	.
CG4095-RA	GTTGGGTGAGTCGGAAATGTGTTTTCCAAGTGGAAAAACATGCATACATAACCTTCTCCTCCCAGCTGA	69	+	chrX	6577338	6577407	6577338..6577407				0	no match
CG7152-RA	CGAGGATGGAGAGATTGAACTGGACATGGAGTGTTGTCCCAAGCCGGTTGTCTTCGTCGTGCACAA	66	-	chr3L	21739666	21739784	21739666..21739716,21739768..21739784	CG7152-RA,CG7152-RB,	FBgn0037130,	Syn1,	1	.
CG15729-RA	AGGTGGCGGTTGTAACAAATCCCTTAGCCAACATGTCCTGCAAACACGTACCGCTTCCTCGGAAC	65	-	chrX	12459141	12459206	12459141..12459206	CG15729-RA,	FBgn0030399,	CG15729,	1	.
CG14708-RA	TCGCCTCAAGTCCATCTACGATCATCTGGAGGACATGTTCATCAACGGCAATCGCAGAACGGCCTC	66	+	chr3R	7380392	7380458	7380392..7380458	CG14708-RA,	FBgn0037910,	CG14708,	1	.
CG12156-RA	CATTCGATCCGGCGAATATAAGGCGGAGGATGGATGGGACGGCATCAAGTCTGGCTTTTCGCGAC	65	+	chrX	7630221	7630286	7630221..7630286	CG12156-RA,CG12156-RB,	FBgn0029959,	Rab39,	1	.
CG15890-RA	CGGCGAGATGGCAGTCACGTATCTATTCACGCGATTCCGGTTCAATTGGTCGGAAGTGGAGTTTAGTTT	69	-	chrX	14652843	14652912	14652843..14652912	CG15890-RA,	FBgn0030576,	CG15890,	1	.
CG14073-RA	GGACCAGGATCGGGTGACAACAACGATCAAGCAGAACGGGGAGACGAGTGCAACAAAGACTGGATC	66	-	chr3L	18796580	18796646	18796580..18796646	CG14073-RB,CG14073-RA,	FBgn0036814,	CG14073,	1	.
CG9277-RA	TGTAAAAGATTTGTTCTCTTAACAACGTAATCAATAAAGTCGGATCCAATTTTGTTCACAAGTCT	65	-	chr2R	15334823	15334888	15334823..15334888	CG9277-RB,CG9277-RA,CG9277-RC,CG9277-RD,	FBgn0003887,	betaTub56D,	1	.
CG5289-RA	GCCGCATGAAGGTGACCAACGAGGACTTCAAGAAGTCAAAGGAGAGCGTCTTGTACCGGAAGAAGGAG	68	-	chr3R	19755694	19755762	19755694..19755762	CG5289-RA,	FBgn0015282,	Pros26.4,	1	.
CG31652-RA	TGGATCGCGTACAGACCATTGTCCAGAAGAGTTTCAATCGCTTCTTTGGGAAGAGCACCACTCCGGAGA	69	+	chr2L	4964500	4964569	4964500..4964569	CG34124-RA,	FBgn0083960,	CG34124,	1	.
CG10541-RA	AGGCCCTGAAGTACCAAACATTTTAGTCGGGCAGCACTACATCCAGTACAGCACCAGTCCAGTAGTCGC	69	-	chr3L	5787620	5787689	5787620..5787689	CG10541-RA,CG10541-RB,	FBgn0035638,	Tektin-C,	1	.
CG8732-RA	TGGCAGATATGTAGCTGAAGCTGAGTTTGGTTTGGAAATGCGCTGTGTATGTGCTAGGAATGCTGTTCA	69	+	chr2R	4569437	4569506	4569437..4569506	CG8732-RE,CG8732-RG,CG8732-RA,CG8732-RI,CG8732-RF,CG8732-RD,CG8732-RH,CG8732-RC,CG8732-RB,	FBgn0263120,	Acsl,	1	.
CG13186-RA	CCAAGGATCGTTCCATGATCTACATCGAGCACACGTACGAGTGTCCCATTTTCCAGACCAAGGCCGACG	69	+	chr2R	7968886	7968955	7968886..7968955	CG13186-RA,	FBgn0033680,	CG13186,	1	.
CG13167-RA	TTTGTAACAAAGTCTACAATTCGGCCAAATTCAAACTCTACGTGATCAGAGTCCAATTCCAAAGTCACC	69	+	chr2R	8144787	8144856	8144787..8144856	CG13167-RA,	FBgn0033706,	Vha36-2,	1	.
CG8798-RA	ACGGACAAGCATATCAACATTTCCGAGGATGCCCTAAACATGCTGATTCGCAGTTATTGCCGGGAATCC	69	-	chr3L	19602478	19602547	19602478..19602547	CG8798-RA,CG8798-RC,	FBgn0036892,	CG8798,	1	.
CG11561-RA	TCGGTCTAATGACTCACTTAGCTGCTCCTCTGAAGAGCTGGATGTGGCTTTGGACGTAGGAAGCCTTCT	69	+	chr2L	281144	281213	281144..281213	CG11561-RA,	FBgn0003444,	smo,	1	.
CG2118-RA	GTCCGAGAAGGAGATGAGGTGTCTGTGCACTACGACCCCATGATTGCCAAGCTAGTCGTTTGGGG	65	-	chr3R	27617920	27617985	27617920..27617985	CG2118-RA,CG2118-RB,CG2118-RC,CG2118-RD,	FBgn0039877,	CG2118,	1	.
CG9677-RA	GGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGTCCACCTCTTACCTGTACTTCTGCCTCATCGT	69	-	chr3L	16779375	16779444	16779375..16779444	CG9677-RA,	FBgn0025582,	Int6,	1	.
CG31111-RA	AGGCCGAACTATCTGTGACCCGATCCCAAAGACTTTACTTGATAGAGCGCCTCATGTTTCACGAGGGCT	69	-	chr3R	20881500	20881569	20881500..20881569	CG31111-RA,	FBgn0051111,	CG31111,	1	.
CG13101-RB	TGATTGACTGGAGCAAACCTCAAAATGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTGCA	69	-	chr2L	8978262	8978331	8978262..8978331	CG13101-RA,CG13101-RB,	FBgn0032084,	CG13101,	1	.
CG33461-RA	GGGTCTCACGTCTACCGATTTGAATACCAAGTCATCCCGCGTTCTCATGGAACTGAATCTCTACCGCCG	69	+	chr2R	11583652	11583721	11583652..11583721	CG33461-RB,	FBgn0053461,	CG33461,	1	.
CG9726-RA	GATGGGGACAAGAACGGGTTGCTTCACTTGACAGCACGAAGACCTGGAGACTACCATGAGTCCCG	65	-	chr3R	26318627	26318692	26318627..26318692	CG9726-RA,	FBgn0026190,	PH4alphaMP,	1	.
CG9739-RB	TCGCTCCCGCTTTTTGGTTAGGGCACTCTTAGCAAAGGTTTTCCAGAAATGCCATATAAATTCGAGTAG	69	-	chr3L	19136750	19136819	19136750..19136819	CG9739-RB,CG9739-RA,CG9739-RC,CG9739-RD,	FBgn0016797,	fz2,	1	.
CG17230-RA	GCGCCCAGATCGAAAGCATGTACGAGTCAGAGGCCAAGTACAACCTACAGCGCAGTGAGGAAAACTG	67	+	chr3R	7290771	7290838	7290771..7290838	CG17230-RA,CG17230-RB,	FBgn0046225,	CG17230,	1	.
CG32095-RA	CAGCCGCAGTATTGCACAATCTACTGGAAGAACTGAGCGAACCACACATGCTTGAGTGGGGCAACTCG	68	-	chr3L	11817519	11817587	11817519..11817587	CG32095-RA,	FBgn0052095,	CG32095,	1	.
CG40270-RA	CAAAAATGAATTTAGTGGGAAACATTTCGACTTTAAGAATTTTTTGAGAGCTAAGTGCCTAATGA	65	+	chr2RHet	2380552	2380617	2380552..2380617				0	no match
CG10391-RA	GCCAACGATGTGGGCCAATGTGAAGACAAGACAAAGAGCAATGTTTTTATAGGATTTGGCATTGGGGGA	69	-	chr2L	18651438	18651507	18651438..18651507	CG10391-RA,	FBgn0032693,	Cyp310a1,	1	.
CG14121-RA	TGCATCCGATTCACTTCTGCACCTGCATCATCTACGCCTTTGTAACTGGCAATGGAACGCACAACGAGT	69	+	chr3L	12517733	12517802	12517733..12517802	CG14121-RA,	FBgn0262524,	ver,	1	.
CG13113-RA	AGATGCTGAGGCGACTTACCAGTGGTCGTAGTAAAGCTGACACCATTGATGTGGAAATGGCAAGTCGCA	69	+	chr2L	9544472	9544541	9544472..9544541	CG13113-RA,	FBgn0032126,	CG13113,	1	.
CG9075-RB_00957-01195	TCTTCTGCAACACCCGTCGCAAGGTGGACCAACTGACCCAGGAGATGTCTATCCACAACTTCACCGTCT	69	+	chr2L	5984601	5984764	5984601..5984624,5984718..5984764	CG9075-RA,CG9075-RC,CG9075-RB,CG9075-RD,CG9075-RE,	FBgn0001942,	eIF-4a,	1	.
CG15564-RA	AGGACACCGTCGCACGATAGGTACGCATCCAAGCACAAGCATCCACCAAAGAACTGTCAGCTGACC	66	-	chr3R	27058509	27058575	27058509..27058575	CG15564-RA,	FBgn0039833,	CG15564,	1	.
CG3318-RB	GTGGCGGGTTCCCAGTAGTGTATCAACGTTCGATTCAGCGTAGTGTAAACAAACAGTACAAGTTACGTA	69	+	chr2R	20045126	20045195	20045126..20045195	CG3318-RA,CG3318-RB,	FBgn0019643,	Dat,	1	.
CG9786-RA	ACTGTAGCCACCTTTCAATCTGTCTCCTATACACTCTTGTATTTTCGAAATCGACTAAAAACCCTGAAA	69	-	chr3R	4517347	4517416	4517347..4517416	CG9786-RB,CG9786-RA,	FBgn0001180,	hb,	1	.
CG6119-RA	TTTCGTATACTTAGTCATTATCATTGTTTTTAGCCCTAAGTTCAGCTTAATTTGTTTGTAATAAAACTA	69	-	chr2R	9405756	9405825	9405756..9405825	CG33528-RD,	FBgn0260964,	Vmat,	1	.
CG2041-RA	AACTGCCGGAAGTGTCAGTGCTACTAACGGTGTCTCTGGCATCAATTTCGTAGGTCCCTCTTCTACGGA	69	-	chr4	458171	458240	458171..458240	CG2041-RA,	FBgn0039907,	lgs,	1	.
CG33280-RA	CGACCAACTCCGCTTGGCTAAAAACATCCCGCACACTATCTCCGGAAAAGTCCGCAATCTGCTGGTAG	68	-	chr3L	6648251	6648319	6648251..6648319				0	no match
CG4122-RA	TTGATGTGGCTGACGATAGCGAAGACGACATAGTGATGTTGCATAACAACGGGAACAAGAGACGGCACT	69	+	chrX	402000	402069	402000..402069	CG4122-RD,CG4122-RC,CG4122-RB,CG4122-RG,CG4122-RH,CG4122-RI,	FBgn0004648,	svr,	1	.
CG3371-RA	GGCCGTGTACGATTGGATACGCCGCATGATGTACTACAAGGACTTCAGCATCTCCGACGGACTCATCCA	69	-	chr3L	684245	684314	684245..684314	CG3371-RA,	FBgn0035153,	ebd1,	1	.
CG12014-RA	GGCCAGGGATGACTTCAAGCACTCCAACATATCCTTTCCCTACGGACCGATATCCCCACTCCAGG	65	+	chr3L	3379128	3379193	3379128..3379193	CG12014-RA,	FBgn0035445,	CG12014,	1	.
CG7457-RA	CCGTTTTGGATCTATCATGCAACTTTATTGGCAACGAGGGATGTCAGCAGTTAGCAAAGTCGCTGCCCA	69	-	chr3L	7715881	7715950	7715881..7715950	CG7457-RA,	FBgn0035812,	CG7457,	1	.
CG33182-RA	AGCAATGCAATCCTACCAAGGCCAAGAGTTTCAAAGAGCGTAATCCCGATCTGGACCTGGATGAAATCC	69	-	chr2R	9073960	9074029	9073960..9074029	CG33182-RA,CG33182-RB,CG33182-RC,CG33182-RD,	FBgn0053182,	Kdm4B,	1	.
CG40121-RA	AACTTTGGAGACACAATTTAGCTCAGCAGCCCCAACCGCATCAACACCACATGCCCATCAGGATC	65	+	chr3RHet	2136548	2136857	2136548..2136571,2136815..2136857				0	no match
CG1140-RB	ACTGGAGCCAAGTTCACAGTGTCGCCCAATCTGAAGAAAATGGGTCAAATTCCGGTCTGATGAGCCACG	69	+	chr3L	1966619	1966688	1966619..1966688	CG1140-RB,CG1140-RA,	FBgn0035298,	CG1140,	1	.
CG6271-RA	AACTTCTACCTCTTCACGCCCAAGAACCCCTCGAGCAGCAAGCACATCTACGCCACTACCAAGTC	65	-	chr3R	22851471	22851536	22851471..22851536	CG6271-RA,	FBgn0039476,	CG6271,	1	.
CG15819-RA	AATCCAAATTTGGTGGCTTTTAATCCGAACCGAAACTAACCGTAAGCGCTTTCTGACAAAATTCGGCTA	69	-	chr2L	7473269	7473338	7473269..7473338	CG42533-RF,	FBgn0260486,	CG42533,	1	.
CG14296-RB	ATCCAGTCAAGTCAATCGAAGCATAGCAACACTTACGAACCTACTAACGCGTTTACCAACCGCAACTCT	69	+	chr3R	14735430	14735499	14735430..14735499	CG14296-RA,CG14296-RB,	FBgn0038659,	endoA,	1	.
CG11796-RA	CGGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGATCACGTGGTG	69	-	chr3L	20431980	20432049	20431980..20432049	CG11796-RA,CG11796-RB,	FBgn0036992,	CG11796,	1	.
CG9954-RA	GCACCACTTTCGCCATGTCCAATTCCGGATATTACCGATGACGATTTGGTGAGCATTTCGGTAAGGGAT	69	+	chr2R	16528685	16528754	16528685..16528754	CG9954-RA,	FBgn0034534,	maf-S,	1	.
CG31681-RA	TTCCTGGGCCAGAGGAACGGATTGTCGGAGGTTCATACATCCCCATCGAATATGTTCCTTGGCAAGTGT	69	-	chr2L	2286711	2286780	2286711..2286780	CG31681-RA,	FBgn0051681,	CG31681,	1	.
CG33220-RA	CGGAACAGGCTAGAAAGGAACATATATTGCCCCAAAACCTCAACGACACACCGTATTGGGAAAGCCGAA	69	+	chrX	3969836	3969905	3969836..3969905				0	no match
CG32106-RA	GCCACCGGAATTTTCACTGCAGCCAAATTTTGTTCACGGAGAACAGCATCCTACTTTCAGACACCACGC	69	-	chr3L	12767262	12767331	12767262..12767331	CG32106-RD,CG32106-RE,	FBgn0052106,	CG32106,	1	.
CG30285-RA	AAATGGTCCCCATGAGTTCGGCACACCTGGAAACGGCATTTACATACGGGGTCAGAACGAAGGAC	65	-	chr2R	17575799	17575864	17575799..17575864	CG30285-RA,	FBgn0050285,	CG30285,	1	.
CG15327-RA	GCCACTGGATTTGCTGAGTCCATGAGCTTCGTTGTGGCAGCACTTAATTGCTTGATGGGAGCACTCTGT	69	-	chrX	7771079	7771148	7771079..7771148	CG42294-RA,	FBgn0259190,	Ir7d,	1	.
CG3446-RA	AAGCGCCAAAAAAAGAAAGTATCGACCAATTATAATGTCAGATCAGATTGGCTGAAATACCGATTCTCT	69	-	chrX	6243593	6243662	6243593..6243662	CG3446-RA,	FBgn0029868,	CG3446,	1	.
CG3348-RA	CGAGCCAAGATCAGTCAATCGGTGTCCACAAATTAGTGATATCTTACGGCTAAACTTAATTTAATGCTA	69	-	chr3R	23117348	23117417	23117348..23117417	CG3348-RA,	FBgn0040609,	CG3348,	1	.
CG31478-RA	CCCGACCTGAAGAAGGAGAACAAGGACTTCTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGA	69	+	chr3R	11157087	11157156	11157087..11157156	CG31478-RA,	FBgn0038319,	mRpL9,	1	.
CG3320-RB	GCCACTGACAACGCTAGCAAAGTGAAAATCGATCAAGGACGTCCAGTGGAAAACACCAAATCCGGTTGC	69	-	chr3R	17092675	17092744	17092675..17092744	CG3320-RA,	FBgn0016700,	Rab1,	1	.
CG5663-RA	GCAATCTGCTGTATCCAATTCTCTCTGAGTGCCGAGTGATCAAGTCACCCGAAGAGATCGAGGTGCTG	68	-	chr3R	8238511	8238579	8238511..8238579	CG5663-RA,	FBgn0000455,	Dip-C,	1	.
CG15506-RB	TCGGCAGCACACCATTTTGATTCTCCTACTGCTACTGGGACTTGTTCTGTGGACCGATTCCTCGCTG	67	+	chr3R	25546871	25546938	25546871..25546938	CG15506-RB,	FBgn0039686,	CG15506,	1	.
CG8780-RA	CGGCGAAATGTACATGATGGAGAGTCTTTACTGTAGCAGTTGTCCGATCTGCAAGAGGAAGTACGCCTT	69	-	chr3L	19646192	19646261	19646192..19646261	CG8780-RA,CG8780-RB,	FBgn0036899,	tey,	1	.
CG6144-RA	GTGCTGGAGTTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGACGACCCGT	66	+	chr2L	10489396	10489462	10489396..10489462	CG6144-RB,CG6144-RC,	FBgn0032259,	CG6144,	1	.
CG1136-RA	TCCCCCGACTTACGATTAACCTGTACATATAACCACGCTCAAAGCTTTCCTTTCTCAAGGTCCCACTGT	69	+	chr3L	4059138	4059207	4059138..4059207	CG1136-RA,	FBgn0035490,	CG1136,	1	.
CG32580-RA	AAGTGTTGGAACTATTACACAAAACTGAAAGTGATGTTCCATAAGGCAATGCAAGAGACGAGTGCCAG	68	+	chrX	15955585	15955653	15955585..15955653	CG32580-RA,	FBgn0052580,	Muc14A,	1	.
CG4026-RA	ATCAACAAGCAGCATTTGTTTGATTGAAACAGGTTTAAACTAAGTATTTGTGCAAAGCAATCCAAATCA	69	+	chr2L	9788398	9788467	9788398..9788467	CG4026-RA,CG4026-RB,	FBgn0032147,	IP3K1,	1	.
CG11353-RB	GCAGAGCAAGCCAAAATCGATTTAAAGATGCTAGCCCTAAACTAGATCGTTAAGGTCACCGCACACGCC	69	+	chr3L	4538973	4539042	4538973..4539042	CG11353-RA,CG11353-RB,	FBgn0035557,	CG11353,	1	.
CG40181-RA	CCGAGACGATGGGAGATTTACGGTGAACTGCTGTATTTTCTGTCAGGAGTTGGAATCAGGACGTTGCCA	69	-	chr3RHet	2380472	2380541	2380472..2380541				0	no match
CG30446-RA	GCTTTCGGCTGAAGGGTTCCGACAAGCTGAATGAGAAGCTGCTGAGCATAATCAACGAGTCCGGC	65	-	chr2R	2573206	2573271	2573206..2573271	CG30446-RA,	FBgn0050446,	Tdc2,	1	.
CG4050-RB	GCGGAGAAGTGCTATCGCAGCATACTTCACTACGATCCCCACAACACTCAGGGCTTGCACAATCTCTGT	69	-	chr2R	17011865	17011934	17011865..17011934	CG4050-RA,CG4050-RB,	FBgn0020312,	CG4050,	1	.
CG13070-RA	TGGCAGAGGATTCATTTTACCAGGAACCAGAACGGATTGAAGGGATTCAGTTCATCGAAGACCCCGCCA	69	+	chr3L	16256818	16256887	16256818..16256887	CG13070-RB,	FBgn0036586,	CG13070,	1	.
CG31083-RA	TAATTATTTTAAAAGTGTCCATTCTTACCTGTCCTCGATGAAATTCCGACCAAGATCACAGCTTTTGGC	69	+	chr3R	22258903	22258972	22258903..22258972				0	no match
CG1602-RA	AGCATGCCATTTATGCCGGAAGTACAGCCGAGAAGTTCTACCTAGAGGTGTGTCGGTTCATGCCTGCAA	69	-	chr2R	3405177	3405246	3405177..3405246	CG1602-RA,	FBgn0033186,	CG1602,	1	.
CG40198-RA	ACCACCGAAAGGCCTGTGACACACCATACCACCGAGGTAAACACAGACTTTACTCCGGATGAATCTAGT	69	-	chr3RHet	2505557	2505626	2505557..2505626	CG40198-RB,	FBgn0058198,	CG40198,	1	.
CG15484-RA	CGCCAGTGGAGAACAGTCCGGATAACTCAGCCGATGACTCATTTCACACCGCTAAAAGTCTGAGCAACT	69	-	chr2L	12706973	12707042	12706973..12707042	CG15484-RA,	FBgn0032452,	CG15484,	1	.
CG7349-RA	ACTGGGCAATACACCGATACATCCTATTAACTACATTTTAACCAAGGACCTCATGGACTTTACGTTAGA	69	+	chrX	18790509	18790578	18790509..18790578	CG7349-RA,	FBgn0030975,	CG7349,	1	.
CG40339-RA	ATCAAGCAGACTTGTATACTCCTGTTCTCTGGAAATCATATTGGTAATGATCATCCTCGTAAGCA	65	.	.	.	.	.				0	no match
CG2759-RA	GGCTCGGTGCCAGTATACCTCAAATGGTTGTCGTACCTCTCATGGTTCCGTTACGCCAACGAGGG	65	-	chrX	2684978	2685043	2684978..2685043	CG2759-RA,	FBgn0003996,	w,	1	.
CG31069-RA	TAAGGCTCACAAAATGCTGCAGAAAATCCACTATGTGAGGTGCCCGAAACTGGATCAATTAATGGCCAC	69	+	chr3R	22992093	22992162	22992093..22992162	CG31069-RA,	FBgn0003482,	spn-D,	1	.
CG11668-RA	TGGACCACACTCCAGTAATCTCCTGCAAATCATGCTTTACCACCTGAATTTCCAACAATGCCAGAGGTA	69	+	chr3R	8865398	8865467	8865398..8865467	CG11668-RA,	FBgn0038113,	CG11668,	1	.
CG4550-RA	ACCTGGTCATCAACTGCATGGGACTGTTCAAGTTCGAGGGCCTTACACCACTGAATACCATTTGGGGA	68	-	chr3R	15712514	15712582	15712514..15712582	CG4550-RA,	FBgn0002940,	ninaE,	1	.
CG9116-RA	TCTTCGAGATAAGTATCTGTGAGCTGAAGACATCTTAATCGGATAAAGTCGAACAATAGCCAGTTAGTG	69	-	chr3L	1218092	1218161	1218092..1218161	CG9116-RA,	FBgn0004429,	LysP,	1	.
CG6359-RA	TAGCCAGTGCAAAACCCGTTTCTTCCAACCGATAAAAGGGGCGTCTATAGCTCTGCCGATCCGGA	65	+	chr3R	8453980	8454045	8453980..8454045	CG6359-RA,	FBgn0038065,	CG6359,	1	.
CG40478-RC	TCGGCCAACTCATTGTCACATTTGGAGCAAGCCACAAAATTAGATGCTTTGGGAGAATACTCGGCGTCA	69	-	chr4	1230075	1230144	1230075..1230144	CG40478-RA,CG40478-RB,CG40478-RC,CG40478-RD,CG40478-RE,	FBgn0027101,	Dyrk3,	1	.
CG3425-RA	ACTTCGTTTGAGAATCCTCTACTCAGTTTGCTTTCCTAAGCTGCAGGAAGAAGACCGACGCTGGGACCA	69	-	chr2R	18217385	18217454	18217385..18217454	CG3425-RA,	FBgn0017482,	T3dh,	1	.
CG33481-RB	CGGCTCGAGCAAAAATTCTTGGATCTACGGAAATTCATGTAAAACGGGATAGCACTATTGCCCTGGCTT	69	-	chr4	270693	270762	270693..270762	CG33481-RC,CG33481-RD,CG33481-RE,	FBgn0053481,	dpr7,	1	.
CG31418-RA	GGGTGCCAGTTCACCACAGCAGACTAAATGGCGAACGGATTGTTCACGACAAGGGTATTTATAAACTCT	69	+	chr3R	13109908	13109977	13109908..13109977	CG31418-RA,	FBgn0051418,	CG31418,	1	.
CG1978-RA	GCTCTGGAAATAGTTGGATTCGATCCCAGTACTCCGCAACTGAGTCTGAAACATCCCATCTGGGCCGGG	69	+	chr2R	5232959	5233028	5232959..5233028	CG1978-RA,	FBgn0033404,	Or45a,	1	.
CG32112-RA	TTCAGCTCTTGATCCCCAATAAGTGGAAAAACGAAAAGCACAAGCCCATATGCATTCATCTGGCCGGAA	69	+	chr3L	12736192	12736261	12736192..12736261	CG32112-RC,CG32112-RB,CG32112-RD,	FBgn0052112,	CG32112,	1	.
CG15685-RA	AATTGGTATGATGGAATCACGGAAACCTCGCACACCATAGCCCGTTCTTCGGTGACCATCCTGGG	65	+	chr3R	16168051	16168116	16168051..16168116	CG15685-RB,	FBgn0038789,	Ir92a,	1	.
CG4058-RA	ACAGCTCCTGCCATCGTCAATGCCTATTATAGCCGCAACAAGAACCAGATCATGTTTCCCGCCGG	65	-	chr3R	16479708	16479773	16479708..16479773	CG4058-RB,CG4058-RA,	FBgn0038818,	Nep4,	1	.
CG8634-RA	TCACATGTTGAGCGTTATTCGAGCTAGTTTTAAGTCATTTGAAAATAAACTTTGTTTGAGCCATCAACC	69	+	chr3L	7086860	7086929	7086860..7086929	CG8634-RA,	FBgn0035737,	Cpr65Ec,	1	.
CG1751-RA	CCAACGAGGTCAACCGTCTGTTCAACGCCTTAGCTGCCGACAAGAAGAACGCTAGCAGCCTTTCTTCTA	69	+	chrX	11380080	11380149	11380080..11380149	CG1751-RA,	FBgn0030306,	Spase25,	1	.
CG14117-RA	GGCCAGCCAAAAATGTGTTCTACGTGCTTGGAGGCTTTTCCCATCGACAACTTTTCATCTCACGCATGC	69	+	chr3L	13001832	13001901	13001832..13001901	CG14117-RD,	FBgn0036331,	CG14117,	1	.
CG1639-RA	TGCTCCGGTTAGATTCCATGTGGACGCATTATTGGCATCTTTATTCGACACAAATAATCCTCATAATAC	69	-	chrX	11218645	11218714	11218645..11218714	CG1639-RA,	FBgn0001491,	l(1)10Bb,	1	.
CG15380-RB	GGAGCCCAAGATGTCCATGGCCTTTCAGCTGAACATCATCGGTGAGTGGCATTTGACGAGATGTGAAAT	69	-	chr2L	2065582	2065651	2065582..2065651				0	no match
CG8740-RA	AACGCACCTAGTTGCTAGTTGTAATCATTAATGCGAACTCGAAACGTAATTCTAATCAATTCAACTGAC	69	+	chr2R	4646865	4646934	4646865..4646934	CG8740-RB,CG8740-RC,CG8740-RA,CG8740-RD,	FBgn0027585,	CG8740,	1	.
CG32189-RA	AGTTCCTGATCTTCTACGAACCCTATCGTCATGCGCTTTCTACTAGCTCTCTCCCTGGCCGTCCTGGTC	69	.	.	.	.	.	CG32189-RA,	FBgn0052189,	CG32189,	1	.
CG1343-RA	ACTATAGCTCCGCATTGAGTCATTCGCTGTTGGGATCGGGACAACATTTGCTGCAGGACACCTACA	66	+	chrX	9647971	9648037	9647971..9648037	CG1343-RB,CG1343-RD,	FBgn0020378,	Sp1,	1	.
CG17469-RA	GCACCGCACTCAGCACCAATGTAAGTATACCCTTCTTTATTACGAACATCCAGTGTGAATGGCAGCTGA	69	+	chr4	1227831	1227900	1227831..1227900	CG43369-RA,CG43369-RD,	FBgn0263112,	Mitf,	1	.
CG7309-RA	GCCTTCAGCTTTAGCTATAGTTCCGCTGTTTGTGGATTGAACACCTACTTGGCGGATTCGATGAACTCC	69	-	chr2L	10907200	10907269	10907200..10907269	CG7309-RC,	FBgn0032314,	CG7309,	1	.
CG1747-RA	AGTGGGCAGTAGTGAAATATTAAATCCGTGTGCTTTGCAAAGCCTTAATCATAACGAGATACATTCGAA	69	+	chrX	11339579	11339648	11339579..11339648	CG1747-RB,CG1747-RA,	FBgn0030300,	Sk1,	1	.
CG4133-RA	GGTCTGGGTCAGAACGAGCACTACATCTACGTGACCTATCCACCGGACCTCAAGAAGCGCTACTTCGAG	69	+	chr2L	458318	458387	458318..458387	CG4133-RA,	FBgn0031257,	CG4133,	1	.
CG32071-RA	CCAGAATCCGTAGAGAAGTCACCATGCGTCCTATTCTTGTGCTATCCCTGGTCATCTTGGCCACGCTGG	69	-	chr3L	11096897	11096966	11096897..11096966	CG32071-RA,	FBgn0052071,	CG32071,	1	.
CG9849-RA	ACCGATCACAACGCAGGACATAATAGCGGGTGACGTGTTTTTTGAAATCCTGTCCCCCTCGGAACTGGA	69	+	chr2R	18825457	18825526	18825457..18825526	CG9849-RA,CG9849-RB,	FBgn0034803,	CG9849,	1	.
CG2082-RC	ACAAAGTTCGAACAGTCTAAGTTGAGACCAGCTTTGCGAAAGATGCACACGGATTATATATACTCGTAT	69	-	chr3R	1585202	1585271	1585202..1585271	CG2082-RB,CG2082-RC,CG2082-RH,CG2082-RJ,CG2082-RK,CG2082-RL,	FBgn0027608,	CG2082,	1	.
CG9394-RA	ATCTGGTGGAAGTTTATGCCGAACAACCGGATGAGGACCTGGTCCGTCTCCTAGGATACTCGCAC	65	+	chr2R	17006900	17006965	17006900..17006965	CG9394-RA,	FBgn0034588,	CG9394,	1	.
CG9595-RA	ACAGGACCGATTCACAGAGGATGAATTCGATGTGCTGAAGCACTACGTGGAGGTGCAAGGAGGCA	65	-	chr2L	6556930	6556995	6556930..6556995	CG9595-RA,	FBgn0031829,	osm-6,	1	.
CG15792-RA	GGGCGACCTGAAAGAGATCGAAACCACCATGGAGATGCATAACAAGGTGAAGGAAGATGCGTTGAAGCA	69	-	chr2R	20880240	20880309	20880240..20880309	CG15792-RB,CG15792-RA,CG15792-RC,CG15792-RD,CG15792-RE,CG15792-RF,CG15792-RG,CG15792-RH,CG15792-RI,	FBgn0005634,	zip,	1	.
CG14672-RA	AAAGCCGTCTCACCTTATAAGGCAACCGAGGTGCATAGCCCACGCTACACAACTCTACGTGCACAG	66	-	chr3R	1444550	1449517	1444550..1444591,1449492..1449517				0	no match
CG33325-RA	AAACAAATTCCGCATGAGACAAATCCGTGCAGGGTCGATCTAATTCGCTTGAAAAAAGAACTGGGACGC	69	-	chr3R	4504792	4504861	4504792..4504861	CG33325-RB,	FBgn0053325,	CG33325,	1	.
CG31646-RA	AATGCCGTCTTAAATCTTGTAAACCCCTTTCCTTCGAAATGTGTCGTTTTTTGGTGGAAATAAAAAAAC	69	-	chr2L	5626302	5626371	5626302..5626371	CG31646-RA,	FBgn0051646,	CG31646,	1	.
CG3679-RA	GCCGCTTGAGGAATCCAGCCATAAACGAATCGGTGTCCAAACCCAGTGGAAGTGTTAAGGCGACGAAG	68	+	chrX	16199894	16199962	16199894..16199962	CG3679-RA,	FBgn0027521,	CG3679,	1	.
CG3131-RA	ACGGGTCTCAAGGCGGTGAATCACTTTGGTCGCCCAGATATGTCCAGCTTCTTGAAGTTCGTGCAAAAG	69	-	chr2L	2816544	2816613	2816544..2816613	CG3131-RB,	FBgn0031464,	Duox,	1	.
CG15313-RA	GCCGGCCAAGACTGCCGTAATCTCAGCCACGTCAAGTAGTCAATTTCTGGACGAGGGATTCCCGG	65	+	chrX	9944105	9944170	9944105..9944170	CG43374-RC,CG43374-RF,CG43374-RG,CG43374-RK,	FBgn0263132,	Cht6,	1	.
CG15261-RA	CTCAACGATTTCGGGGCAGTCAATGAGGTCTACAAGCGGGTGTTCAATAAGGATTTCCCGGCCCG	65	-	chr2L	15274365	15274659	15274365..15274390,15274619..15274659	CG15261-RA,	FBgn0086691,	UK114,	1	.
CG30416-RA	GTACCGTGCAGGTAAAGGTCACCAATAGAAAGGAGGCATCCGTGAGGGGTCATCATGACCGGGAG	65	-	chr2R	19209439	19209504	19209439..19209504	CG30416-RB,	FBgn0050416,	CG30416,	1	.
CG40251-RA	AGTTTTTTTGCCACAACTTTAAAAATAATTTTTTAATGACTCCCCTCATCCCCTTACAAAAAAGGCGTA	69	.	.	.	.	.				0	no match
CG11462-RA	TTTGCATTTACTTGCTTTCTTGCTTTTTTCCGGTGAAAAATTGACATATTTCGGTACTTGCAACTGGAG	69	-	chrX	5733620	5733689	5733620..5733689				0	no match
CG6053-RA	TGTCTCGAGTACAACCAGAAGGATCCAACCAGTCTCGTGAGTGGCATGTACAATGGTCAGGTGGCC	66	-	chr3L	11691612	11691678	11691612..11691678	CG6053-RB,	FBgn0036195,	CG6053,	1	.
CG3386-RA	TCCAGAGCAACTACAACAATCAGTGGGAGTATGTGAGGTGTTTACCAACACTAGACGCTAGAAGTGGCA	69	-	chr3L	681908	681977	681908..681977	CG3386-RA,	FBgn0035152,	CG3386,	1	.
CG31002-RA	TGATGGGCAACGTCTCACCGATTTCTTACCTGCAGTCTCCCTCTTCTCGATTCTACGATCTGGAGGCCT	69	-	chr3R	27220357	27220426	27220357..27220426	CG31002-RA,	FBgn0051002,	CG31002,	1	.
CG31544-RA	GGCCAACATGACCTTCGCTCCAGGTTACAAGCCAAAGGAAAAGACTTCATGGCAAACTCGAACCTGCGT	69	+	chr3R	3245706	3245775	3245706..3245775	CG31544-RA,	FBgn0051544,	CG31544,	1	.
CG1668-RA	ACAATCACTCATCTCACCCAGAGCTGTTGATCGATTTAATTACAAGCGGGATTTCTCATCTCTCATT	67	+	chrX	20290641	20290708	20290641..20290708	CG1668-RA,	FBgn0011280,	Pbprp2,	1	.
CG15452-RA	ACCCATGCACAATCCACTAAGTCGACGCCACACTGTGAACAGCTCTCGACTCCAGTACATTAATGACAA	69	-	chrX	20616263	20616332	20616263..20616332	CG15452-RA,	FBgn0031130,	CG15452,	1	.
CG31035-RA	GGAATCAATAACAAAAAACCATAGAGAAAATCGTAATTTGGTGGATAATTTGCATACGATTGGGTGGTT	69	+	chr3R	25695319	25695388	25695319..25695388	CG34133-RB,CG34133-RC,	FBgn0083969,	CG34133,	1	.
CG11847-RA	TCCCAAAACGTTGCTAGAGGCAGGATCCATGGCTATTTCGTACAGTGTTGCTTGGGATGCCAAAGTGGT	69	.	.	.	.	.	CR41506-RA,CG11847-RB,CG11847-RC,	FBgn0085789,FBgn0259152,	CR41506,Clbn,	2	.
CG3911-RA	GACGCCAAGAAAGTGAACTCGGAGTTCCTGACACTCACCTACGGAGCACTCGTCACCCAGATGCT	65	.	.	.	.	.	CG3911-RA,	FBgn0260859,	Bet3,	1	.
CG17382-RA	TGGCCGAGAGTTTGACCAGGTACCGATCAGTAAGGGTACTTATCGAGGTGCAGGATAAAGAAGGCTCCT	69	+	chr3R	19313502	19313571	19313502..19313571	CG17382-RB,	FBgn0039080,	Ir94h,	1	.
CG12242-RA	AAGTACGGCAAGGATGACACCCTCTTCCCCAAGGATCCCAAGAAGCAGGCTTTAGTCAACCAACG	65	+	chr3R	8201707	8201772	8201707..8201772	CG12242-RA,	FBgn0010041,	GstD5,	1	.
CG6059-RA	GCCTGCATCATCTGGAGAACAAGGAGAACTTCATTGGCAAGGGGGATTTCTCGATTCGCAGTGGCAAGG	69	-	chr3R	22947516	22947585	22947516..22947585	CG6059-RA,	FBgn0039491,	CG6059,	1	.
CG9773-RA	TACAAGTATCGCGTATATTAGTAATGCAATGTGCGTTGTAAATTATTCTGCGTTTAGTTGCTAAGCCAC	69	-	chr3R	4501054	4501123	4501054..4501123	CG9773-RA,	FBgn0037609,	CG9773,	1	.
CG9723-RA	TCGGCTGGACTACTGATGCTAACCGTGGCTGGATATTTCACATCGGGTATTCCTGGCAATACGGCTTCC	69	-	chrX	16548825	16548894	16548825..16548894	CG9723-RA,	FBgn0030768,	CG9723,	1	.
CG3215-RA	GCAGACACTGGACGAAAAGGTGCCCATGTACGTTTATGAGGAAATTGTTGAAGGTCGCAAACTCACGGA	69	-	chr2R	19017485	19017554	19017485..19017554	CG3215-RA,	FBgn0034825,	CG3215,	1	.
CG6049-RB	ACATTACTATGGATGAGTTTGCCGATCTGATGGGCAAGTGTGGCATGGTAATGAGAGATCCGCAGACGC	69	-	chr3L	21417627	21417696	21417627..21417696	CG6049-RB,CG6049-RC,CG6049-RA,	FBgn0037081,	CG6049,	1	.
CG3092-RA	ACATCATCCGTCAGCAGAGTGCCGATAAGATTAGCGAGTATACGACACCGGTGGGCTTCCAGCAG	65	+	chr2R	19120682	19120747	19120682..19120747	CG3092-RA,	FBgn0034835,	CG3092,	1	.
CG12587-RA	GAGCCAGGTTGCACAGATGACGGCCTTGTTAGAGGGGAAGGCGAAGGATGTGGATGAGAAAGTCTT	66	+	chr3R	420545	420611	420545..420611				0	no match
CG31431-RA	GTGACGGAGCGGTATTCGGGACTGTACAAATGCAGCATTAATCCGCACATTTGGGATAAAGCCCAGGCT	69	+	chr3R	17698411	17698480	17698411..17698480	CG31431-RA,	FBgn0051431,	CG31431,	1	.
CG7386-RA	TCGCCTTATGAGCTGTTCCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGGAGCACATGAA	69	+	chr3L	6183488	6183557	6183488..6183557	CG7386-RA,	FBgn0035691,	CG7386,	1	.
CG7359-RA	CTCGCCCATACGCATTCATCGAGTTTGACGTGTACATACAGAAGGCGAAAAAACAGTTGACGGACCGCA	69	+	chrX	701135	701204	701135..701204	CG7359-RA,CG13358-RC	FBgn0260855,FBgn0026874	Sec22,CG13358	2	.
CG2246-RA	TCGGCTCGTTCGATCGTGGGAGTGATTCCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAA	65	-	chr3R	26420927	26420992	26420927..26420992	CG2246-RD,CG2246-RF,CG2246-RE,CG2246-RA,CG2246-RC,CG2246-RB,CG2246-RH,CG2246-RI,CG2246-RJ,CG2246-RK,CG2246-RL,CG2246-RM,CG2246-RG,	FBgn0039790,	CG2246,	1	.
CG6084-RB	TGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCAACTTCAACAGAAGGCAGATCGAGCGCGTG	65	-	chr3L	11614765	11614830	11614765..11614830	CG6084-RB,CG6084-RA,	FBgn0086254,	CG6084,	1	.
CG41134-RA	TCTGAAGAGGAAAAAACAGTAGAGCAAAAAGATCCAGAGTTGGGAAATCGAAAGTGTGGAAGTTTTTT	68	-	chrU	986872	986940	986872..986940				0	no match
CG11447-RA	AGGCGATCTAATTTCGATATTACACAATGCGTCTTGTTTTTACGGGTAATTGTGTTTTTAAACGCCTGC	69	+	chr3R	15687338	15687407	15687338..15687407	CG11447-RA,	FBgn0038737,	CG11447,	1	.
CG40439-RA	CTTCGTTCGTCACACAAGTATGGATTTCAAAATTCAGACGACTTTCTGTTGGTCATACGAATCGTGTCA	69	-	chr2L	22690731	22690800	22690731..22690800	CG40439-RA,CG40439-RB,	FBgn0058439,	CG40439,	1	.
CG40351-RB	GCCACCGCCATCAAAAAAGCGAAGAAAAGACGACGAACTGATCCGACATAAGACTGGATGTGCGCGAAC	69	+	chr3LHet	599546	599615	599546..599615	CG40351-RA,CG40351-RC,CG40351-RB,CG40351-RD,CG40351-RE,CG40351-RF,CG40351-RG,CG40351-RH,CG40351-RI,	FBgn0040022,	CG40351,	1	.
CG13308-RA	ACCGCAAATGACGTAACGTGCAATACAGACGTGGCCCAAAGATCCTGTATAGGTTGTGGCACCTGC	66	+	chr3L	8801835	8801901	8801835..8801901	CG13308-RB,	FBgn0035932,	CG13308,	1	.
CG10379-RA	CGCCAAGGCACGTGACTCAACTGATTTTACCAGCCTGTCGCAAAACATGGATTGGACCCCGAATGGTTA	69	+	chr3R	19626228	19626297	19626228..19626297	CG10379-RA,CG10379-RB,	FBgn0015513,	mbc,	1	.
CG6383-RA	CAGTGCATCTGCCAGAAACCCTATTGCGGAGCCTACTGCAACTTTACGGATCCCTGCAACGCTAC	65	+	chr3R	20139127	20139192	20139127..20139192	CG6383-RC,CG6383-RA,CG6383-RB,	FBgn0259685,	crb,	1	.
CG9696-RA	TGAGCTCAAGGTGAAACGCTGAAGATTACAACGATGATCGCTTCAATCAGCTCAAGGCATGGAAGCCGT	69	+	chr2R	17228955	17229024	17228955..17229024	CG9696-RD,CG9696-RA,	FBgn0020306,	dom,	1	.
CG11679-RA	GCAGCGACTTCAATGTCACGTCACGGGCATTCTTCCAGAATGGCAAGTTCTTTGTTACCGCCGATACGG	69	-	chrX	15632123	15632192	15632123..15632192	CG11679-RA,	FBgn0030678,	CG11679,	1	.
CG40402-RA	GTCGACTGGAACACGCTGAGAGCTATACCACCGAATCGAGAAGAGATCCGCGACATCCTAAGCCCCATT	69	-	chr3L	24283631	24283966	24283631..24283647,24283913..24283966				0	no match
CG1986-RA	GGATTTCGTCGCCTCGATCCTAACAAAAAGTTGGCCCTATTTTTGCACGGCTGGAATGATCAGGGCAGC	69	-	chrX	9804540	9804609	9804540..9804609	CG1986-RA,	FBgn0030162,	CG1986,	1	.
CG14837-RA	TCACTACGATGGTCATTTTAGCGGTGAAAACTCACAGAGTGCCTCCCAATCGGATTTGTCCAGCGGC	67	-	chr3L	7550410	7550477	7550410..7550477	CG14837-RC,	FBgn0035797,	CG14837,	1	.
CG15754-RA	GAACTCAACGAAGACGGAAGCTATATCTTTGGCTACTCCATTCCCCATGGCATTCGTCGCTGGGAG	66	+	chrX	13422615	13422885	13422615..13422647,13422851..13422885	CG15754-RA,	FBgn0030492,	CG15754,	1	.
CG13889-RA	CGCAATCTCGTGGAGAAGTTGCGATCGGAGAACAAGTTCCTGAAGGATGGTCGACGATCCACGGAG	66	+	chr3L	850551	850617	850551..850617	CG13889-RA,	FBgn0035168,	CG13889,	1	.
CG15055-RA	GATACGGAGGCTATGGCTCCTATAGTGCCGCTCCGGTCATCTCGCACGGATATCTGGCCCATGCC	65	+	chrX	18318461	18318526	18318461..18318526	CG42323-RD,CG42323-RE,	FBgn0259223,	CG42323,	1	.
CG2061-RA	ACTGGGACGTTGGAGTGAAAGATGGAGAAGGATGCTAGGTGCTGCATAGATCCCAGGTCCCGATG	65	+	chrX	10988481	10988546	10988481..10988546	CG2061-RA,CG2061-RC,CG2061-RB,	FBgn0027498,	CG2061,	1	.
CG32062-RB	TCATTTATCCCGATCCATTTTGTGACCCCCAAAAATTCTGTAATCTGTGTAGTCTAACCATAAGCCAGC	69	+	chr3L	10586245	10586314	10586245..10586314	CG32062-RH,CG32062-RK,	FBgn0052062,	A2bp1,	1	.
CG2095-RA	TGCAGTCTACTGTGATGGTCGAACGGAGGTTGATGGAAACTAAGAACCTCATTCAAGACTTGCCCTGCT	69	-	chr3R	1582199	1582268	1582199..1582268	CG2095-RA,	FBgn0262603,	sec8,	1	.
CG6668-RA	GGCATCTTTGGATTGGTGGGTCTCTATACGTTCGCCAACTTCTGCAACCTGGTTATGGGTGTGGCG	66	+	chr3R	20458994	20459060	20458994..20459060	CG6668-RA,CG6668-RB,	FBgn0039213,	atl,	1	.
CG9606-RA	CCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCTCAATCACGACGGGAATCTGTATG	69	-	chrX	16684706	16684775	16684706..16684775	CG9606-RA,	FBgn0030789,	Rrp45,	1	.
CG11634-RA	ACCAATGGCTTCACCCATTTTTGTGTGTGACTGTACGCACGATAAGCTGGGAAGTTACCCAACTGGAGT	69	+	chr2L	21916874	21916943	21916874..21916943	CG11634-RA,	FBgn0032968,	CG11634,	1	.
CG6210-RA	GCCGACAATGCACCACAGTGACGAGACCACACAGTCGAATGAGAATATAGTTGCCTCAGCAGCCA	65	-	chr3L	11160423	11160488	11160423..11160488	CG6210-RA,CG6210-RB,	FBgn0036141,	wls,	1	.
CG9172-RB	CGTTCTGTTAACGTTCAGTTGTTGTATACATTGTTTGTTGGATCACGAGGATATTGCAAATAAATGCCT	69	-	chrX	15879895	15879964	15879895..15879964	CG9172-RB,CG9172-RA,	FBgn0030718,	CG9172,	1	.
CG15394-RA	GGGCAAAGACCTCGTACGTAAATGACTTTGTATTCCCCACCGAAGATGAGCAAGTCATTCGCCCCTGGC	69	+	chr2L	2592294	2592363	2592294..2592363	CG15394-RB,	FBgn0250835,	CG15394,	1	.
CG15485-RA	AATGGCGATAAGCTCCGGAGACTGAAGACTGATGTCCACGCCTATGATGAGTTCCGGGTTCAGGG	65	-	chr2L	12667355	12667420	12667355..12667420	CG15485-RA,	FBgn0032442,	CG15485,	1	.
CG9681-RA	GTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCACACTCCCCCAACTATAATCGCAAGAGCATTG	65	-	chr3L	16720651	16720716	16720651..16720716	CG9681-RA,	FBgn0043578,	PGRP-SB1,	1	.
CG32026-RA	CCCGAGCAGGTGATCGAGAGTATGAACCGAACGAAAGTTGGTCTCAAAGGTCCACTGATGACACCCGT	68	+	chr3L	8830898	8830966	8830898..8830966	CG32026-RA,	FBgn0052026,	CG32026,	1	.
CG31371-RA	ACGAGGAGTCCCTGAATCATCTGCTACATCTGCAATCCGTCTACGAATTGGACTCGAATAGCCTCTCCT	69	-	chr3R	26328625	26328694	26328625..26328694	CG31371-RB,CG31371-RC,	FBgn0051371,	CG31371,	1	.
CG10512-RA	CCCCTGAGCTTTGTTTAAACTCGAAAGAACTGGTGGACTTACACTAGGGAGTCAAGCATACCCATTGCC	69	+	chr3L	21200676	21200745	21200676..21200745	CG10512-RA,CG10512-RB,CG10512-RC,CG10512-RD,	FBgn0037057,	CG10512,	1	.
CG6104-RA	TCGTACCCCCCTTATTATTGTAATTTCATTTATTTATTTCCCTGCGCAATATTAACGTTGTTGATGTGA	69	-	chr3R	21842299	21842368	21842299..21842368	CG6104-RA,	FBgn0002592,	m2,	1	.
CG9556-RA	ACAGTCACTCCACATCAAGTCGGCCATTCCTCATCCCCTAATCATGGGTGTCATCCGTGAGTGCG	65	-	chr2L	8996330	8996395	8996330..8996395	CG9556-RA,CG9556-RB,	FBgn0013746,	alien,	1	.
CG15577-RA	AGGGAAACCAGTTTTCGCTGCGATCCCGACGCCTTGGTGAACTGATGTCTACTCTTGGATCCTCG	65	-	chrX	4170651	4170716	4170651..4170716	CG15577-RA,	FBgn0040904,	CG15577,	1	.
CG33261-RB	GGTGGAGCACCATCAGTTGGACCAGGAGCACATAATCATAGATCATCACCAACAGACGGAGGATGATCA	69	-	chr3L	14741923	14741992	14741923..14741992	CG33261-RB,CG33261-RI,CG42507-RA,CG42507-RB,	FBgn0013263,FBgn0260233,	Trl,CG42507,	2	.
CG11857-RA	CGCCAACAGCATCGTCCATCAAACCACCGCAGATCATTGCCATTGAGGACTACTAGAGAAAGCTACCGA	69	+	chr3R	21085888	21085957	21085888..21085957	CG11857-RA,CG11857-RB,	FBgn0039303,	CG11857,	1	.
CG9449-RB	CAAGCTCTACGATCCCGGCGCTGATAAATCCACGCTCGAGCTGCTGCATGTGGTATTCCGACATG	65	.	.	.	.	.	CG9449-RE,CG9449-RF,	FBgn0036875,	CG9449,	1	.
CG11398-RA	CGCCCTCGACAGCGCAGGATACCTGGAGAATTCACAATTTTCGAACACCGGCAAGATGACTGCCATATT	69	-	chrX	1108008	1108077	1108008..1108077	CG11398-RA,	FBgn0040366,	CG11398,	1	.
CG15458-RA	GCCACCTGGGCCTCGTTGGGACTCGTCTACGTCCTGGTCAAGATGCACCGCCGCAACACGAAGCG	65	-	chrX	20284915	20284980	20284915..20284980	CG15458-RA,	FBgn0040651,	CG15458,	1	.
CG8679-RA	GGGGTTTGGCAGCGTTTTCTGGACTCCATTTTTTACATAGGCAAGGGTAAATGTTCGCGACCGTACGCT	69	-	chr2L	21216742	21216811	21216742..21216811	CG8679-RA,	FBgn0032934,	CG8679,	1	.
CG40043-RA	TGGTCTTTCGGAGGAAACGACAAGGACCTGACGTATTTGAAAGGGGCAGTGGAGTCAGTGGTCGG	65	+	chr3L	23888258	23888323	23888258..23888323				0	no match
CG15879-RA	TCCCGGACATGGAAGATCCGCTCACATTCAGCCTGGAATGCACTACGCCGTCAACGATTACGTGTTAAT	69	-	chr3L	2168545	2168614	2168545..2168614	CG15879-RA,	FBgn0035309,	CG15879,	1	.
CG9884-RB	TGGACGCGGACATTCGAATGCAAGCCACTGGGTGAAGGTTATACTACAGCAAAAAAGGAGTAAAACGAA	69	+	chr2L	2497264	2497333	2497264..2497333	CG9884-RA,CG9884-RB,CG9884-RC,CG9884-RD,	FBgn0011818,	oaf,	1	.
CG9834-RA	TGCCCAAAGAGCTACGCTACTCCGTTGCACAGATCACGCTGTAATCAAATATGCATTCTGGCTGCCTGA	69	-	chr2R	15195515	15195584	15195515..15195584	CG9834-RA,CG9834-RB,CG9834-RC,CG9834-RD,	FBgn0034433,	endoB,	1	.
CG3100-RA	TGGCAAACGCTTCCAAATGCTAAGTAACTCAGCCAACGTGCAGTTCATCGACGAAACGGAGACCCACAT	69	+	chrX	1583472	1583541	1583472..1583541	CG3100-RA,	FBgn0024897,	b6,	1	.
CG41106-RA	GCCTTCTCCCTGGCAACCATATGCCTGCTAATCTTTTATGGATTCAATCACGCCACTAAGCAGGACCCC	69	+	chrX	22347527	22347596	22347527..22347596	CG41106-RA,	FBgn0069938,	CG41106,	1	.
CG4763-RA	GCACTCGATGCACTTTTGTCATCCTGGCACTAACCATTCTGCCAAACCAATTCCATTGCCAGGTGGGT	68	-	chr2R	19712307	19712375	19712307..19712375	CG4763-RA,	FBgn0034910,	CG4763,	1	.
CG40337-RA	ACGCCAATAGCATCACCAACGACAACCAAGTCAGCCACAATAACGCCGATCAATCCAATGCGAGCATCA	69	+	chr3LHet	2484268	2484337	2484268..2484337				0	no match
CG8646-RA	GGGTCTCATGTGGTCACCTCTGCTGAAGAAAAGCCAACGAGTGTCCAACCAGACCATGCACATCATTGA	69	+	chr2R	8546021	8546090	8546021..8546090	CG8646-RB,	FBgn0033763,	CG8646,	1	.
CG2277-RA	TCCCAGTGTGATGAACTGGCTCGGGGAACTGCGAAAATCCGGCAAGAAGCTATTTTTGCTCACCG	65	-	chr3L	1306300	1306365	1306300..1306365	CG2277-RA,	FBgn0035204,	CG2277,	1	.
CG13211-RA	TGAGACCTTCCATCTTGTTAATCAATACAATCGCCCTGTAAATGACTAAATCATAAACCAGTAAACGTA	69	-	chr2R	7182070	7182139	7182070..7182139	CG42336-RB,CG42336-RC,CG42336-RD,CG42336-RE,CG42336-RF,	FBgn0259238,	CG42336,	1	.
CG30344-RA	TATGATGACAACCTCTCTGCTAGAGAGCATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCT	65	+	chr2R	5034188	5034253	5034188..5034253	CG30344-RA,	FBgn0050344,	CG30344,	1	.
CG9030-RA	AGCGTGCAGGCAGATTGTTTTGGTTCTCCGAGCAGATATTCCCCCTCATGTTCTACTATGCTCTGGGCA	69	-	chrX	14848833	14848902	14848833..14848902	CG9030-RB,	FBgn0030599,	CG9030,	1	.
CG9634-RA	AGGCCCTTGGACTTACCAGGCGCTTGAGAATACCCGGTCTGAGGTCTTTCAACGAGAACGAACTCTTTA	69	-	chrX	16622082	16622151	16622082..16622151	CG9634-RA,	FBgn0027528,	CG9634,	1	.
CG2969-RA	AATTGGAGCGGGTCTCGATGTTCGTGCTGATCTGTGTGCTAAACTCACTGGTGGCACAATCGCTG	65	+	chr2L	4343977	4344042	4343977..4344042	CG2969-RA,CG2969-RB,CG2969-RC,CG2969-RD,	FBgn0020762,	Atet,	1	.
CG9124-RA	GCCGAGTTCACGTCGTGGGTCTTTTCGCTTACAATTCGTCAACATGGCAAATCGCGCAAATCGTCATGC	69	-	chr2L	5052709	5052778	5052709..5052778	CG9124-RA,CG9124-RB,	FBgn0022023,	eIF-3p40,	1	.
CG31694-RA	TCGGTACCGAGTCGCTGACACTAGATTCCTGGTCCATCCATCATCAGTATTCGGCCATGTGCACTGTCA	69	-	chr2L	2869450	2869519	2869450..2869519	CG31694-RA,	FBgn0051694,	CG31694,	1	.
CG6472-RA	AAAGGACGCGTTTCTCAGGAGGGGCAACTACAATGTCATCCTCATCGACTGGAGCGCGATGACAG	65	+	chr2R	12770808	12770962	12770808..12770816,12770905..12770962	CG6472-RA,	FBgn0034166,	CG6472,	1	.
CG9643-RA	ACGATGCAGTCAGTCTTTGTCCGGATAATGCCAAGGAGAAACGTGCTCTCTACCTGGACACGGTGGAAA	69	-	chr2L	2978730	2978799	2978730..2978799	CG9643-RA,	FBgn0031485,	CG9643,	1	.
CG9897-RA	TGGCTCTCTTGAAAACCTGCGAGCTACTCAACACCACCGATGAAATAAAGCCAATTGAGAGGGCCGACA	69	-	chr2R	18873457	18873526	18873457..18873526	CG9897-RA,CR42742-RA	FBgn0034807,FBgn0261706	CG9897,CR42742	2	.
CG14239-RA	TCCGGACTGCGATCTTGAGGGATTCTTGTGTCTGGAGAAGACTCGTATGATCAAGCCAGATTCCAGGGT	69	-	chr3R	22228025	22228094	22228025..22228094	CG14239-RB,	FBgn0039424,	CG14239,	1	.
CG15189-RA	ACCTTAAGCAAGCAGAGAAGCAAACACCAAAATAAAGTAGACAAATAAATGCCTTGAATATGCTG	65	+	chr3R	2162853	2162918	2162853..2162918	CG15189-RA,CG15189-RB,	FBgn0037429,	Osi19,	1	.
CG5179-RA	GCCCCAGGACAACAGTATGATTGACCGGGTTTGGTAGACTGCCAGAGGTGTACGCACCCGACTAATAG	68	-	chr2R	18523660	18523728	18523660..18523728	CG5179-RA,	FBgn0019949,	Cdk9,	1	.
CG11872-RA	AAGAGCTCATTCACCGGACATAGCCCAGCAGTTCTTTAGACCCCTGAAACTGAGTCCCGTGGGAA	65	+	chr3R	6132539	6132604	6132539..6132604	CG43143-RE,	FBgn0262617,	CG43143,	1	.
CG8696-RA	TGGCTCCCACATTCCCTTCAACTTTGACTTCCTTACGAGCATCAACAACGCCTCTAAGGCCGGAGAGTA	69	-	chr2R	4338376	4338445	4338376..4338445	CG8696-RA,	FBgn0002570,	Mal-A1,	1	.
CG11621-RA	GCGGTCAGGAGCCCAACACATATGTGAAGTGCTACCTAAAACCGGATCCCAAAAAGGAGACCAAACGCA	69	-	chr3L	11769110	11769179	11769110..11769179	CG11621-RC,CG11621-RA,CG11621-RD,	FBgn0015278,	Pi3K68D,	1	.
CG4020-RA	GGCGAGGTGATCGATATCGGTAAGACGTTCATCCGCAAGAATCCATTCGAGAAGACACTCTGGCTGCC	68	+	chrX	5801131	5801199	5801131..5801199	CG4020-RA,	FBgn0029821,	CG4020,	1	.
CG33459-RA	GGTACGGACATTCTGTCGATCATACCCACATCTGTGCCGGAAGTAGCAAATCATTTGCCTGCGTCGGG	68	+	chr2R	12376391	12376459	12376391..12376459	CG33459-RA,	FBgn0053459,	CG33459,	1	.
CG31365-RA	GCGACAGAGGCCAGGAAGGATGCAAAAGAAGAGGAATTCATATTGGGCTGCAATACCGACCCCGCAAAT	69	-	chr3R	18951194	18951263	18951194..18951263	CG31365-RA,	FBgn0051365,	CG31365,	1	.
CG14227-RA	CCTGTGCGGGCCTAAGTGTCTGCACCAATGTGACTTTCTACATGGACTGGATCTGGGATGCTCTGGTTA	69	-	chrX	19581909	19581978	19581909..19581978	CG14227-RB,	FBgn0031058,	CG14227,	1	.
CG33453-RA	CAAATCCTGGGCTGTTTTTCATTATTGCCGGCTAAAGGCTTACTCGCGTAACAAGACCAGCTTGAACAT	69	-	chr2R	15140459	15140528	15140459..15140528	CG33453-RA,	FBgn0053453,	CG33453,	1	.
CG9065-RA	CCAGCCCCTTCAACTGTTTGTTTTTGTTGCATCTCAAGCTAATTATAGAACTAAATTAATTGAAAACCA	69	-	chrX	14978054	14978123	14978054..14978123	CG9065-RA,	FBgn0030610,	CG9065,	1	.
CG9591-RA	CGTGTGTGCATGGAATAATGGAGCGTCTGCGAGTGTTGAGTGTGGAATTTGGAATGTGCGAAATGTGCG	69	-	chr3R	9505340	9505409	9505340..9505409	CG9591-RA,	FBgn0038168,	omd,	1	.
CG3214-RA	ACCACAGCGAGAATCTTTCCGGAACTAAGGAGGCCTACTACCCCTACTCCACAACACCCAACAAAGTGG	69	-	chr2L	2579387	2579512	2579387..2579426,2579482..2579512	CG3214-RA,CG3214-RB,	FBgn0031436,	CG3214,	1	.
CG31104-RA	TGCAACGCCTAGAGGTTGAGATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT	69	+	chr3R	21112024	21112093	21112024..21112093	CG31104-RA,	FBgn0051104,	CG31104,	1	.
CG32429-RA	AGAAATGGAAAATTCGTAACTGGTACATGGCCCTTCATTTCTGGCTTTGCTACCTTGACGCCACCAAA	68	-	chr3L	20383719	20383787	20383719..20383787				0	no match
CG9300-RA	CCATGTCCAGCACTTGATGAGCCACCTGTTCGATCTGGTCAATGACCCCAATGTCCAGTTGGAGG	65	+	chr3L	19547443	19547508	19547443..19547508	CG9300-RA,	FBgn0036886,	CG9300,	1	.
CG33310-RA	ACGGCGACTATGGACACAATCCGCGTTTTGGAACGTGTACTGCGAATGAAAAGTTTGGCTATCCAAGCG	69	+	chr2L	15028934	15029003	15028934..15029003	CG33310-RA,	FBgn0053310,	CG33310,	1	.
CG6118-RA	TTGCAGTCCCTACTTCCAACAGATCTTTCTGGAGAACCCATCGAGTCACCCCATCCTGCTGATGG	65	-	chr3R	11249528	11249593	11249528..11249593	CG6118-RB,CG6118-RC,	FBgn0038339,	CG6118,	1	.
CG6149-RA	TCACTGGACTGGGTGCCTTCATGTTGGGATATCTGGTGTGGATACATATCGTTTGGTTCCGGACCGACA	69	-	chr3L	11428020	11428089	11428020..11428089	CG6149-RB,	FBgn0036158,	CG6149,	1	.
CG6018-RA	GCTCTACGAGTGCCTTCACATTCTGAGCATCAAGAACTTCTGGCACGATATCCATCGCACCTTGCTCGC	69	+	chr2R	18439006	18439075	18439006..18439075	CG6018-RA,	FBgn0034736,	CG6018,	1	.
CG30114-RA	CCTGCGGTGCTTAAAAATTCTGAGGCATCTGTCAAGTCGAGCGAAGGTGAAGGTTTCGCGCAGGC	65	+	chr2R	14095626	14095691	14095626..14095691	CG30114-RA,	FBgn0050114,	CG30114,	1	.
CG12050-RA	ACTTTATGATGCGAGGAATCCACGGCTTCCTCTCCAAACCCTCAGCTGTCCTCCCGGCTTAGATG	65	-	chr2L	21100304	21100369	21100304..21100369	CG12050-RB,	FBgn0032915,	CG12050,	1	.
CG1304-RA	GCCAGGGTGTACTACCACAACGAATGGATTAAGAATAACTCGGATGTGAAATAATGCTGGCATAGCTGT	69	-	chrX	20835632	20835701	20835632..20835701	CG1304-RA,	FBgn0031141,	CG1304,	1	.
CG14969-RA	CCTGTTGGACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAGGTTGCTCACAGTCCCGCATC	66	-	chr3L	3333493	3333559	3333493..3333559	CG14969-RA,	FBgn0035440,	CG14969,	1	.
CG6163-RA	CCGCTCCACGTGGGAACACTTCGATCGAATGTCCTTCATGCGGGAAATTCTGCTAAAGAAGGTCGATGA	69	-	chr3L	11356026	11356095	11356026..11356095	CG6163-RA,	FBgn0036155,	CG6163,	1	.
CG31335-RA	TCGCGGTGGAAGTGGATATCGGTTACCTTACGGATTGTGCCCCTCTGCATCTATGCGTTTACGTATGCT	69	-	chr3R	17672177	17672246	17672177..17672246	CG31335-RA,	FBgn0045468,	Gr93d,	1	.
CG4083-RA	CGTAACGCCGAAAAATAAAACTGTACCGAGAGTTTCGAATTTAACATAGCCACATTTAGACATTCTGGG	69	-	chr3L	16606863	16606932	16606863..16606932	CG4083-RA,	FBgn0017572,	Mo25,	1	.
CG7446-RA	TCGCGCCTCGAGGATCGTCTTCCCACTGCTATTCATCCTTATCAACGTGTTCTACTGGTACGGCTACTT	69	+	chr3L	17831659	17831728	17831659..17831728	CG7446-RA,	FBgn0001134,	Grd,	1	.
CG14193-RA	AGCAGATCTCCAAATTGACTTTATCCATTATCATTATCCATCCATGAAGAAAATGTTAAAAGATCTTGA	69	+	chrX	19084886	19084955	19084886..19084955	CG14193-RA,	FBgn0030994,	CG14193,	1	.
CG14183-RA	ACGTCGGAAGAAATTGAGAGACGCTGGAGTCATCGATATTGGCTACGAGCTAACTGCAAGCAAGGCAAT	69	-	chr3L	20019401	20019470	20019401..20019470	CG14183-RA,	FBgn0036931,	CG14183,	1	.
CG33279-RA	TGGCGAGCTGTCTGAGTTATTGGACCACAAGAAAAGTTATTGCAAGCTGAGGTTCACATGCAAGTGCCA	69	+	chr3L	7445489	7445558	7445489..7445558	CG33279-RA,CG42458-RB,	FBgn0259935,	CG42458,	1	.
CG15084-RA	AGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGACAGCTATATGGCCAATAGTCGCCTACGCG	66	+	chr2R	14738936	14739002	14738936..14739002	CG15084-RA,	FBgn0034402,	CG15084,	1	.
CG31047-RA	GCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTTGTTTACTTTTTGGCATGCAATTCTAAGGT	69	-	chr3R	24811706	24811775	24811706..24811775				0	no match
CG10433-RA	TGCTGCGTCCTGATTTAGTTATACTTAACCACACCATACACATACCCGTGCAGAGGAACAGCATCGTCA	69	-	chr2R	17493525	17493594	17493525..17493594	CG10433-RA,CG10433-RB,	FBgn0034638,	CG10433,	1	.
CG15161-RA	CTGGCGCTCAAAGTGAGCCCAGTCTGCTGAATATGAAACTTCGGTCGGTACTGAGTGGCAGCATG	65	-	chr2L	18614815	18614880	18614815..18614880	CG15161-RA,	FBgn0032692,	CG15161,	1	.
CG15069-RB	TTGTCTGTCTATGATTATTCTTAATTTTCTTTTTTTTCCTCGTCTCAGTTCCCGACCATGTGCGT	65	+	chr2R	14432779	14432844	14432779..14432844				0	no match
CG2851-RA	CGGATCCGATCACTACTCCGCGCAGCTAGTGCACATCAAGAGCGATCCCAATGGGTACAGCGATG	65	-	chr2L	584210	584275	584210..584275	CG2851-RA,CG2851-RB,	FBgn0010323,	Gsc,	1	.
CG4108-RA	TGCAAACCAACACCTAATATTTTTTCTTCGTTCGTCATTGTAAATTCGTCAAGCTGGGTAACGACATGT	69	-	chr3L	18676997	18677066	18676997..18677066	CG4108-RA,	FBgn0036805,	Chmp1,	1	.
CG15441-RA	CGAACTTGTTGACTTTGTAACATTACATAATCGGAAGCCCAGAGTGAGGAGAACTGCTGCGAGATGGCC	69	-	chr2L	4456443	4456512	4456443..4456512	CG15441-RA,CG15441-RB,	FBgn0019982,	Gs1l,	1	.
CG2049-RD	GATGCGGAGGATGTTAAGAAACAGGCATTCTTCCGGTCAATTGTGTGGGATGACCTGCTCCTGCGAAAG	69	-	chr2R	5141806	5141875	5141806..5141875	CG2049-RB,CG2049-RC,CG2049-RF,CG2049-RD,CG2049-RE,CG2049-RJ,CG2049-RK,CG2049-RI,CG2049-RG,CG2049-RH,CG2049-RM,CG2049-RL,	FBgn0020621,	Pkn,	1	.
CG15611-RA	CACTTTCCCACCCGGAAAAAGTACCGCTCCAAGGTGTTCCTGTTCGATCGCTGTTTGGTGTGCAC	65	+	chr2R	13001383	13001448	13001383..13001448	CG15611-RB,CG15611-RA,	FBgn0034194,	CG15611,	1	.
CG11501-RA	TGGTCACAGGAATTTGTGAGGAGGAACCAGCAGTACGGAATCCAGATCATCAAAGTCACCAGGCTGCCA	69	+	chr3R	25319873	25319942	25319873..25319942	CG11501-RA,	FBgn0039666,	CG11501,	1	.
CG17376-RA	GCGGCGGAACTGAGAACCGTTGGACCATGTTGTGTAACACGTTTTGGTTAGCAACTCGATCGGATGCAT	69	-	chr2L	6800000	6800069	6800000..6800069	CG17376-RA,CG17376-RB,	FBgn0042189,	CG17376,	1	.
CG1212-RA	CACGCACGACACCTACTACGCCCTGCAAGTCGCCAGAGATGACCGACAAAGACAAGAAGCTGGTG	65	+	chr3L	173438	173503	173438..173503	CG1212-RB,CG1212-RG,CG1212-RD,CG1212-RE,CG1212-RF,	FBgn0035101,	p130CAS,	1	.
CG9159-RA	AGCTCCTGCAGCATTTTCAGACAAATCGCATAGATTCCGCGCTATGGGCACTACGTCTGCTGGTCATCT	69	+	chr2L	6072573	6072642	6072573..6072642	CG9159-RA,CG9159-RB,	FBgn0028419,	Kr-h2,	1	.
CG15926-RA	AGATTGAGATTCAGACAACACAAGAATGAACTAGAGGAACATTAGGAAAACCAAGCTCTCTGACCAACA	69	+	chrX	12370797	12370866	12370797..12370866	CG42258-RC,CG42258-RD,	FBgn0259143,	CG42258,	1	.
CG31533-RA	GCACCCAGACTGCAATGAAGGAGCCACCAGTTATACCGCCTCCATATCCAGTAGCCCACAATCACTTCT	69	-	chr3R	9980762	9980831	9980762..9980831	CG31533-RA,	FBgn0051533,	CG31533,	1	.
CG9019-RA	CCGCGCCCTTACTTACAAATCACTTCCCATCCCACATCCAGCAATTCCGTGGTTTGAATTCTTTCGTGC	69	+	chr2L	5938552	5938621	5938552..5938621	CG9019-RA,	FBgn0015381,	dsf,	1	.
CG12781-RA	TGCTCTCCTTCTTCGATCTTTCCGAGACACGTTTGTACATCGTCCTGGGACTAATTGCGGCCCTGG	66	+	chr2R	18801737	18801803	18801737..18801803	CG12781-RA,CG12781-RB,CG12781-RC,	FBgn0034797,	nahoda,	1	.
CG9938-RA	AGGGATCAGGTGATCAGCAAGAAGTGTGATTTGCCCGATCGCAAAGCCTTAGACCAGCTAATCGGCGAT	69	-	chrX	13504876	13504945	13504876..13504945	CG9938-RA,	FBgn0030500,	Ndc80,	1	.
CG11734-RB	CACGAGGGTTGAACCGAACCCACTGTCCATCCTGCCCGAAATGAACAATTAAATTAACGACTTACCGCA	69	+	chrX	20282569	20282638	20282569..20282638	CG11734-RC,	FBgn0031107,	HERC2,	1	.
CG31055-RA	TCCTTGGAGCCAATGACACCCAATTTGTCGAGCCAGATCGGGGATAGCGAGTCAAGGGAGAATCTC	66	-	chr3R	23512722	23512788	23512722..23512788	CG31055-RA,CG31055-RC,CG31055-RB,	FBgn0051055,	CG31055,	1	.
CG17342-RA	AACGTGACCAAACCGACGACTACTGCTGAGGGGACAACAATGCAAACGACTTTTGGCATGTCAGCG	66	-	chr3R	7579533	7579599	7579533..7579599	CG17342-RA,CG17342-RB,	FBgn0017581,	Lk6,	1	.
CG13491-RA	AGGACTCTGCAATCTGCACTACGATTCCTCGAATCATCGGTTCATCCTCAATCATGTGCCCACAGTGGT	69	+	chr2R	17864216	17864285	17864216..17864285	CG13491-RA,	FBgn0041237,	Gr58c,	1	.
CG5242-RA	CCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGTCAAATGAGGCGTGTAAGTTCCGGATGTTA	69	+	chr3R	7234379	7234448	7234379..7234448	CG5242-RA,	FBgn0037892,	mRpL40,	1	.
CG4249-RA	GCGACACTCAATAGCTCAGGATCCAACTGACATCTTACCGGATAAAATGCCCAGATTGGATGATTGCGA	69	+	chr2L	16304363	16304432	16304363..16304432	CG4249-RA,	FBgn0028525,	c(2)M,	1	.
CG30092-RD	GCATGACTTGGATTTGACTTGGAGCGGCTTAACCATCACCCAATGTCCCAGGAGTGCCTTCGTCAC	66	-	chr2R	18606229	18606295	18606229..18606295	CG30092-RF,CG30092-RI,	FBgn0028371,	jbug,	1	.
CG32206-RC	GCATAGGCCGAAAATGCATTTTTACTGCCGCCAATTGAGGACAAAACTAAAAATCGAAAACACGGCCGG	69	-	chr3L	19334121	19334190	19334121..19334190	CG32206-RB,	FBgn0052206,	CG32206,	1	.
CG18548-RA	GCACTGGGTGTGGAGTTCGATAAGAAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAA	69	-	chr3R	8191138	8191207	8191138..8191207	CG18548-RA,	FBgn0042206,	GstD10,	1	.
CG13449-RA	GGGGTAAACACGAGAACATAAAGCGTAAGAAGATCATTTTGGACCTACGGAGATCGCACTCCCAGGAGA	69	-	chr3L	15605195	15605264	15605195..15605264	CG13449-RA,	FBgn0036520,	CG13449,	1	.
CG11828-RA	GGATCGGCCTTGGTTTGGCATAATACTGACAACTCCGGCAATTGTGATACCCGAAGCTTGCAGGCC	66	+	chr3R	24750483	24750549	24750483..24750549	CG11828-RD,	FBgn0039616,	CG11828,	1	.
CG5399-RA	GCTTCCTTGCCTTTGCCCTTTTGCTGATCAAGGCCTAAAAATGGAGATGTATCCAATGGCTGCTTTGCC	69	+	chr3R	11522030	11522099	11522030..11522099	CG5399-RA,	FBgn0038353,	CG5399,	1	.
CG14748-RA	AGCAATTAACTTATTAACTTAACTCCCCTGAATGTTGAATGCAACCCAAATGACAGCTTGCGTGCAGGC	69	-	chr2R	4460928	4460997	4460928..4460997	CG42326-RC,CG42326-RD,	FBgn0259226,	CG42326,	1	.
CG2990-RA	GGCTATTACCCGTGCCAAGAACAAGCTCATCCTACTGGGGGACATTAAGTGCCTGGAGCAATACGGTCC	69	+	chrX	9907835	9907904	9907835..9907904	CG2990-RB,CG2990-RC,	FBgn0030170,	CG2990,	1	.
CG10650-RA	CTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTACCATCCTGCTCGACCTGCAAG	65	-	chr2L	18994953	18995018	18994953..18995018	CG10650-RA,	FBgn0046302,	CG10650,	1	.
CG32689-RA	CCACCGAATGTTGTATTCTTTGTTGTGACACGAAAGTTATGCTAAAACTTTATCCTGGCAGTGGT	65	+	chrX	10117523	10117588	10117523..10117588				0	no match
CG4200-RA	CATAACACTAAGCATTCAAGTCTGTTGTCCTCTAAATGTTGTATTTGTGCGTGAGATTGATTCAGGAGA	69	+	chrX	16249166	16249235	16249166..16249235	CG4200-RA,	FBgn0003416,	sl,	1	.
CG32659-RA	ATCCCTTGGATCTTCCATTTGATACCAACCATCCAATGTACATAAGCAGAAATGGAGAGAGAGGT	65	+	chrX	12225939	12226004	12225939..12226004	CG42338-RG,CG42338-RH,CG42338-RI,CG42338-RJ,CG42338-RD,CG42338-RE,CG42338-RF,CG42338-RK,CG42338-RL,CG42338-RM,	FBgn0259240,	Ten-a,	1	.
CG4713-RA	GGTCGCAAGCAAGTAGGTGGAAAATTGGAAGTCAAGATACGCGTTCGCAATCCTATTCTCACCAAGCAA	69	+	chr2L	11110324	11110393	11110324..11110393	CG4713-RA,CG4713-RB,	FBgn0261983,	l(2)gd1,l(2)gd1,	1	.
CG14369-RA	CCGTTCCTCAACTGGGCCAGTGGCTATTCTTGGGCATATCCTGGCTATCCGTACAACTACTATGGCTCA	69	-	chr3R	9418075	9418144	9418075..9418144	CG14369-RA,	FBgn0038159,	CG14369,	1	.
CG7761-RA	TTAACCATGCTACCCAGAAGGTGATGGATGCCGAAACGCAGAAAGCCGACTGTCATGCTGAGCAC	65	+	chr2R	10877526	10877591	10877526..10877591	CG7761-RB,	FBgn0033988,	pcs,	1	.
CG2982-RB	TGGCAGCGTGCGTATCTACCACCATGTGGACAATGGCCTGGATTACTGCAAGTACGAGCCCTATTTCAT	69	+	chrX	4215387	4215456	4215387..4215456	CG2982-RB,	FBgn0029704,	CG2982,	1	.
CG13564-RA	GCCCGCTGGAATCAACAGTAGTGTTCGAAAGATCTCTGAGCTTCGATTAAATGTGGGCTTCCTCTCGAT	69	+	chr2R	19968770	19968839	19968770..19968839	CG13564-RA,	FBgn0034973,	CG13564,	1	.
CG2952-RA	AAGAGAAGCCACTAATAACGGTCTATAGCTTTCTCGCTGTGTAGAAAATACCAAATAAATTAATGA	66	+	chr2R	18954634	18954700	18954634..18954700	CG42640-RA,	FBgn0261363,	CG42640,	1	.
CG7447-RA	TGACCACTCCGTTCATGTGTAGCTAGATGCTCCTGCTTGTAAGCCATTCCCGAATGCGAGTCGAGTGC	68	+	chr3L	4402891	4402959	4402891..4402959	CG7447-RA,CG7447-RB,	FBgn0035539,	slow,	1	.
CG7052-RA	AGCACTTGGCTTACCGCCTATGTCATGCGTTCCTTCCATCAAGCTGGAACATACACGGATATCGATCCT	69	-	chr2L	7695219	7695288	7695219..7695288	CG7052-RA,CG7052-RB,CG7052-RC,CG7052-RD,CG7052-RE,	FBgn0041182,	TepII,	1	.
CG13845-RA	CCCAGGGTACACCCATTCACGAGATGGTCCAAAACTTACATGACATGGCAGCAAAAGTATCGGCGGGG	68	+	chr3R	18285926	18285994	18285926..18285994	CG34376-RB,	FBgn0085405,	CG34376,	1	.
CG14422-RA	CGACGATGAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGATGAAGTGCAGGA	69	+	chrX	2838021	2838090	2838021..2838090	CG14422-RA,	FBgn0029645,	CG14422,	1	.
CG11100-RA	CTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTCCCGAATTTCAAGGGCGC	65	+	chr3L	22939401	22939466	22939401..22939466	CG11100-RB,CG11100-RC,	FBgn0037207,	Mes2,	1	.
CG17806-RA	GCCAGCATCCGAAATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACTACAAGTCATCGGGGAAGTAC	68	-	chr3R	13628234	13628302	13628234..13628302	CG17806-RA,	FBgn0038548,	CG17806,	1	.
CR32893-RA	ACACTTTATTTAAGCCAAACAGTTATCCCTGTCATAAGAATAATTGATGATAAAAGTTGCTGATT	65	+	chr2R	13588963	13589028	13588963..13589028	CR32893-RA,	FBgn0063375,	snoRNA:Me28S-G3277a,	1	.
CG12725-RA	CCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATGTGGGCCATAAGTCCATTCTGGAT	68	-	chrX	13296540	13296608	13296540..13296608	CG12725-RA,	FBgn0030483,	CG12725,	1	.
CG31763-RA	AACAACATTGGCGGCAATATCAACGGAAACGGAAATGGAAATGGCGGAGTCAGCGAACAACGCCC	65	+	chr2L	12373741	12373806	12373741..12373806	CG43065-RH,CG43065-RJ,	FBgn0262475,	bru-2,	1	.
CG4237-RA	TGCTATGCGCGCATTTAATGTAACCAACTGAATTGTGTATTCATTCTTCGACTTCAAACATAAAGTGCA	69	-	chr3L	12408262	12408331	12408262..12408331	CG4237-RA,	FBgn0020655,	Gap69C,	1	.
CG11159-RA	TGTTGCGCCATGACTTTCCCCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTG	66	-	chr2R	16543749	16543882	16543749..16543776,16543843..16543882	CG11159-RA,	FBgn0034539,	CG11159,	1	.
CG5611-RA	AGGTCAAGCTGTTAATCTGGCCTTTTCCATTGCCAAGTTCCCCATGGCTTCCCTAATGCACGACAGGAA	69	-	chr3R	23461015	23461084	23461015..23461084	CG5611-RA,	FBgn0039531,	CG5611,	1	.
CG14861-RA	AGGCGGGGAAGACTTTGGAAGCTCTAGAGGTAGCGGAAGATAACGAAGGCTACACAACACCGAAAGAGT	69	+	chr3R	10840672	10840741	10840672..10840741	CG14861-RA,	FBgn0038280,	CG14861,	1	.
CG18572-RA	GCCATGGTCGTTGGTGGACGCAATACGGCGCTCTAGAGGATTTACCCATGGAAAACCCACAATCTTTGA	69	+	chrX	16562591	16562660	16562591..16562660	CG18572-RA,	FBgn0003189,	r,	1	.
CG15355-RA	CCAAGGATGAGCAACGTGTCCGACGAAATGCAGATCTACGGTTACCGGGTGGCCTACATGAGTGACAC	68	-	chr2L	1998296	1998364	1998296..1998364	CG33543-RC,	FBgn0053543,	CG33543,	1	.
CG31347-RA	CGTGGTTTACCCAATGGAGTACGGGCACCAAATGGACTTCGACAGAGGCTTCCAGATGCAGGGAC	65	-	chr3R	8517902	8517967	8517902..8517967	CG31347-RA,	FBgn0051347,	CG31347,	1	.
CG10160-RA	CCAACGGTGTGACATCCGTGGTCAAGCAGATCCTGACTCCCACCGAAGTTGAACAACTGCAGAAGTC	67	-	chr3L	6252888	6252955	6252888..6252955	CG10160-RA,	FBgn0001258,	ImpL3,	1	.
CG11551-RA	GGGTGTGGAAGTGGCAAACCAACCCCCAGAACAGAGTCTCGAGGTATATAAGAACCGGGTGAGGG	65	-	chr3L	15037056	15037121	15037056..15037121	CG11551-RA,	FBgn0025776,	ind,	1	.
CG30027-RA	GCAGTTGCTTGCTTGCTAATTTTTACCCACTAACCGAGGAGAGATGTGGCTGAGAGCGTTTGTTTAACA	69	-	chr2R	7160430	7160499	7160430..7160499				0	no match
CG14480-RA	GCGCTCACTTTATGAACGCCTCAAACAAAATAAGGACAAGAAGGACATGGAGTTCGAGGAAGCCCACAA	69	+	chr2R	13452534	13452603	13452534..13452603	CG14480-RA,CG14480-RB,	FBgn0034242,	CG14480,	1	.
CG2641-RA	CGCTTCAACAACGTCTTCAAGCAGCCACTGACGGTCATACAGACCTACAACCTCAACATGAGCCCCC	67	+	chr3R	3620866	3620933	3620866..3620933	CG2641-RA,	FBgn0037518,	CG2641,	1	.
CG14646-RA	TACTACGGAAAAGTGTTTTGCCTGCATGCTAAACGAACCAAACACCAAGATCCACAAGCAGTGTGCCGA	69	+	chr3R	217089	217158	217089..217158	CG14646-RA,CG14646-RB,	FBgn0037241,	CG14646,	1	.
CG14632-RB	AGGATGCGGAAAGAAGAGCCAGAAACAAGGACAAGCGCAATCAGAAGAGACGTTAAGCTCAAACCACAA	69	-	chrX	785596	785665	785596..785665	CG14632-RB,	FBgn0029538,	CG14632,	1	.
CG30404-RA	AGCGACGCCAAATATGCCCACGAGATTAACGACAAGATGCGGGTTCCCAAAAGAATAAAGGCCACCG	67	-	chr2R	17607016	17607083	17607016..17607083	CG30404-RA,CG30404-RB,	FBgn0050404,	Tango11,	1	.
CG5226-RA	GCTCATCCTCGGTTACCAAGCAATTACCCGTACTCAATACCACAAAGAACTAATCAACGCACAGCAATT	69	+	chr2R	14410935	14411004	14410935..14411004	CG43066-RA,CG43066-RB,	FBgn0262476,	CG43066,	1	.
CG3887-RA	ACCGAAAAGGTGCAGGAGAATCCGGACTTTGTTAAATAATAGCATTGGACTGACTGGACGGACGGAG	67	+	chr2L	5011823	5011890	5011823..5011890	CG3887-RA,	FBgn0031670,	CG3887,	1	.
CG3563-RA	AATAGCACCAGCAACTCGTATCTGCACTCCTCACAGCACGACTACGAGACCAATCGCTCTTCGGC	65	+	chr3R	10615801	10615866	10615801..10615866	CG43162-RB,CG43162-RA,CG43162-RC,CG43162-RD,CG43162-RE,CG43162-RF,CG43162-RG,	FBgn0262718,	CG43162,	1	.
CG6536-RB	ACCGATTGCTGCCAGAAAATCCGTTCCGTGCATACAACTTATACGCCTGGGGTATACCGCTAATCATGA	69	-	chr2R	13333568	13333637	13333568..13333637	CG6536-RB,	FBgn0034219,	mthl4,	1	.
CG14579-RA	GCGTCGAGCAGAGCCTATTATCAGATATGTGTGCTGCAGATCGTTGACAAGCTTGAGGAGATAGGCGTG	69	+	chrX	21065149	21065218	21065149..21065218	CG14579-RA,	FBgn0031163,	CG14579,	1	.
CG10749-RA	CCACTCTGGATGTGGTACGAGCCCAGACCTTTGTAGCGGACATTCTCAACGTTGATCCCCAGAAAGTGA	69	+	chr3L	12966142	12966211	12966142..12966211	CG10749-RA,	FBgn0036328,	CG10749,	1	.
CG12054-RA	GCCGTCAACGAAGAGACGTAGCCTATACTCAAGCAGCTACTGATGCACCGAAAACTGACGCTGGAGC	67	+	chr3R	27053543	27053610	27053543..27053610	CG12054-RA,CG12054-RD,	FBgn0039831,	CG12054,	1	.
CG3703-RA	GAGTCAACCGAATTCTCCGACACTGGCAATCCGGTTATTAACTCACAAAACGGAGCACTGACCCT	65	-	chrX	837940	838005	837940..838005	CG3703-RA,	FBgn0040348,	CG3703,	1	.
CG13606-RA	CCGCCCCAGCAAAGTAATGCGAACCTCTTTAAGCGCACTGTCTGAACACAGATAGAGATAGCTGCTACT	69	+	chr3R	20006394	20006463	20006394..20006463	CG13606-RA,	FBgn0039161,	CG13606,	1	.
CG7483-RA	AGGCCACCCCTAGTAAGCGGACCGCATTTTTTTCTGTGAAAGTCAGAAAAATTAGCCGAAAAAGACTGT	69	+	chr3R	4138942	4139011	4138942..4139011	CG7483-RA,	FBgn0037573,	eIF4AIII,	1	.
CG32281-RA	CGAGCTGTGGACCAATCTCGAGAGATCCTACTACATCCAACGCCTGTCAAAAACTGGGATTCCCTGCCA	69	+	chr3L	3169747	3169816	3169747..3169816	CG32281-RA,	FBgn0052281,	CG32281,	1	.
CG14315-RA	TGCACTGCCTCATTGCGTTGGATGTCCTTCTGTCGAATGACGATTCGGATAACGAACGCGAGTCATCCA	69	+	chr3R	13984939	13985008	13984939..13985008	CG14315-RA,	FBgn0038568,	CG14315,	1	.
CG31357-RA	AAGCTCCGCAAGATCAACTCGACCATTGAATTCAGCCTGAGGGTGCAAGAGTTCATCGAGCTCGTGC	67	-	chr3R	20654951	20655018	20654951..20655018	CG31357-RA,	FBgn0051357,	CG31357,	1	.
CG14590-RA	AGCCGCTGTCTCGATCCAACGGAATATGGCACCTATATAAGTGCGCTGACTTGTCTGGGGGATGTAAAT	69	-	chr2R	1966990	1967059	1966990..1967059	CG14590-RA,	FBgn0033061,	CG14590,	1	.
CG5690-RA	AGCAGGCCCTTGCTATCCTCACCACTCCTAGTCAAAACTCCATTATCCAATCCAGTGACACTGAAGCCA	69	+	chr3L	1949754	1949823	1949754..1949823	CG5690-RA,	FBgn0035295,	CG5690,	1	.
CG14933-RA	AAACCCCCATTCATTCCACACATCCACACGTATAGAAAACATGAAGTATCTGACTTTGCTGCTCGTTTT	69	+	chr2L	11843185	11843254	11843185..11843254	CG42486-RA,CG14933-RA,	FBgn0259989,FBgn0040968,	CG42486,CG14933,	2	.
CG3480-RA	CGAAAGGCAGTCCAAAGCAGGTTGAAGGGAAGGAGAACAGCGAAGTTGACAAGATGGACCACAGTAGCC	69	+	chrX	1813473	1813542	1813473..1813542	CG3480-RA,	FBgn0023509,	mip130,	1	.
CG30320-RA	GGGGTTACGAAGATCCCGGTCGTGCGATAAGCAGACGACATTTATGCCAGGTAGACACTTCCAACGCG	68	-	chr2R	6364272	6364340	6364272..6364340				0	no match
CG18397-RA	GCTGTTGGACGTGATGACCGTCATCCTGAACTGCAGTTTAGTGAATGACCAATGGACAACGAACAGCGA	69	-	chr2L	18917412	18917481	18917412..18917481	CG18397-RA,	FBgn0032723,	ssp3,	1	.
CG7568-RA	AGGCCATAGCGCTGAGTTATCCAACTGCGTTTGGAATTTTAGCGGATCTCTGATTGCTACTGGCTCCCT	69	-	chr3R	25425436	25425505	25425436..25425505				0	no match
CG32073-RA	TGGCCATTTGCCTGTATTCCGTTGATTGCACCACATCCGGTACAGGATCAGCTGCTACCAGCGGA	65	-	chr3L	11100358	11100423	11100358..11100423	CG32073-RA,	FBgn0052073,	CG32073,	1	.
CG14491-RA	ATCTATCCGGAATCGATGGTTGTAGTCTGCTGTCGAACAAGAATCAGATCGCCTTCATTCAACTGGGCC	69	+	chr2R	13782778	13782847	13782778..13782847	CG14491-RA,	FBgn0034284,	CG14491,	1	.
CG10833-RA	CATCAAGGTTAATCCCAAAACTCGCAAGGATAATGAAATTGATGATACCTACTTTATGCCAGCCTTAAA	69	+	chr2L	5212273	5212342	5212273..5212342	CG10833-RA,	FBgn0031689,	Cyp28d1,	1	.
CG14796-RA	GGGGACCTAGAATACGATAGTTCCGGGAGCTCTGACTATGTGAACGACGCGAATGACATTTCGAGCGGT	69	-	chrX	1447790	1447859	1447790..1447859	CG14796-RA,	FBgn0025390,	Mur2B,	1	.
CG14370-RA	GCCAGGGCATCATGCAACTCAGCCGACTATTCCGGATATGCGCCTATAGTCGCACCTGGATCATGATA	68	+	chr3R	9414212	9414280	9414212..9414280	CG14370-RA,	FBgn0038158,	CG14370,	1	.
CG14925-RA	CGTGAGGAGGGTGTACGACGATTGCCAAGACAAAAACGATTTCATTGGCTGCCTGAAACAGAAAGCCCT	69	-	chr2L	11285376	11285445	11285376..11285445	CG14925-RA,	FBgn0032359,	Osi21,	1	.
CG3402-RA	CCATGGTCACCCACAAAAAGGCCGTGAGCTACATCCGGAAAAACCCGATACTCAACATGCTGGTGG	66	-	chr3L	652113	652179	652113..652179	CG3402-RA,	FBgn0035148,	CG3402,	1	.
CG32253-RA	CGAGGCCACGCGACCTATTAGAGCCTACGATGGCATGGATAACGATGAGCTATTCGAGGACGATGATCC	69	-	chr3L	4281772	4281841	4281772..4281841	CG11583-RA,	FBgn0035524,	CG11583,	1	.
CG32231-RA	CGATATGGAGTAGGGATTCCGATTCCTATCTCCAGCTCCTGGCATCACCCCTGGTGTCGCGATCTC	66	-	chr3L	23294601	23294667	23294601..23294667				0	no match
CG17867-RA	GCCGAGCCATGTTCTCCTGTCCGTGGCAGCTTTTTAAGCCTAAACAACGTCGACTCGTTCAGCTTTTGA	69	-	chrX	11310144	11310213	11310144..11310213	CG17867-RA,	FBgn0030298,	Or10a,	1	.
CG14847-RA	GCAGGAGTCCAGCAGCTTGATGAATTGTCTCGTTCCACGGAATCAGATAGCGGCTTTGACAGCAGCAG	68	-	chr3R	10242600	10242668	10242600..10242668	CG34389-RC,CG34389-RD,	FBgn0086901,	cv-c,	1	.
CG33312-RA	ACGAAGACAAGTGCAGGCTCTTTGCTTTTCAGCTGGTTCGATGTACCTGAAAATCTCAGCCGAAGCC	67	+	chr2L	16807168	16807235	16807168..16807235				0	no match
CG17754-RD	CTCGCCTCGCTCTCGTCTGTGTTCTGACATGATTCCCTGTGGTATGGCATACACCCAGAACTCACC	66	+	chrX	9148916	9148982	9148916..9148982	CG17754-RD,	FBgn0030114,	CG17754,	1	.
CG3640-RA	GGTTCAAGTACAGCGCATCCCATCCATCGAAAGTTTTGGGTGCTGATCGTGATGTAGCCTTCCATCCCA	69	+	chr2R	20528092	20528161	20528092..20528161	CG3640-RA,	FBgn0035042,	CG3640,	1	.
CG31466-RA	GAAAGCTTCGGTCGCTAGCCACAGGTTCTGAGCAACAGGTTGTCGATGTGTGCTCTCGCTCTGAC	65	+	chr3R	3821721	3821786	3821721..3821786				0	no match
CG30056-RA	AAATTCTAAAAAATTACCCTAGTTTTTGATCTACGCTGCGAAAAAGACCAAGATACGAGAATGTGCCCG	69	+	chr2R	8449624	8449693	8449624..8449693	CG30056-RA,	FBgn0050056,	CG30056,	1	.
CG14972-RA	ACGACAAGTGGAGCTCGAGGATAGTGTGATAGCGTGGCAGGATAAGTACGATCGGCTCTACGAATCGCA	69	+	chr3L	3486049	3486118	3486049..3486118	CG42324-RC,CG42324-RD,	FBgn0259224,	CG42324,	1	.
CG6967-RB	GGCAGCGTGGAGACATACCAGGGTCGCGAAAAGACCATAATCATTGCTAGTTTGGTTAAATCCTTCACA	69	+	chr2R	12952771	12952840	12952771..12952840	CG6967-RC,CG6967-RD,	FBgn0034187,	CG6967,	1	.
CG10739-RA	CGCCTTTCACCTTATCGCACGGACATCTGGACTCGCTTATGGGACCTTCTCAACGAGTCAGCCAA	65	+	chr2L	19187942	19188007	19187942..19188007	CG10739-RA,CG10739-RB,	FBgn0010309,	pigeon,	1	.
CG4723-RA	GGTGGGCCAGGAAAAACTTAGGAACCTAAAGCTGCAGATGCCCACTTACGAGCGTCCAGTGATCCTTAA	69	-	chr3R	18588100	18588169	18588100..18588169	CG4723-RA,	FBgn0039023,	CG4723,	1	.
CG10901-RB	CATTTGGGCATCTTTGTGCATCCATTTAACGGCATGAACATAATGAAGAGACGCCACGAAATGACGCCC	69	+	chr3R	4762326	4762395	4762326..4762395	CG10901-RC,CG10901-RA,	FBgn0003015,	osk,	1	.
CG10802-RA	GCGCGGAGATCCAGAAATTGTCGGGAAACTCGGTCCCCAATTTATGGAAATTCTCGAGGGCAAGGGAAA	69	+	chrX	3378293	3378362	3378293..3378362	CG10802-RA,	FBgn0029664,	CG10802,	1	.
CG7367-RA	ATGGGCTATGCTGGTTCGTACACTAAGTACAGGGTAAACCGCATCACTGGCTTGGATCCAGCTCGTCC	68	-	chr2L	8027489	8027557	8027489..8027557	CG7367-RB,CG7367-RC,CG7367-RD,	FBgn0031976,	CG7367,	1	.
CG14691-RA	CGGTAGCTGGAATTGGTCTGGTCGGTTTTCTGATCATTTTTCCCTTAATGCGATTCCAAGTGGTCTCGA	69	-	chr3R	6579766	6579835	6579766..6579835	CG14691-RA,	FBgn0037829,	CG14691,	1	.
CG14962-RA	TGTTTGACTTGCAAACCTCTGCCCACATGTACACCCAAACTTGCGACGATTTGTTTGAGGAACTGGGGC	69	-	chr3L	3164048	3164117	3164048..3164117	CG14962-RA,	FBgn0035407,	CG14962,	1	.
CG11654-RA	GTGAACGTGAAGCCCCAAGTAGATCGGTACACAATGCAGAGTGGCAAGCACATCATCCTGCTGGC	65	+	chrX	15346165	15346230	15346165..15346230	CG11654-RA,	FBgn0014455,	Ahcy13,	1	.
CG13502-RB	ACTTGTTCAGCTCCCGGTGTTAAGTTTCTGTTTGAATTGAGTTGGCTTGATAAGCTGGTATTGAATAAA	69	-	chr2R	17973302	17973371	17973302..17973371	CG13502-RA,CG13502-RD,	FBgn0034692,	CG13502,	1	.
CG30339-RA	GCGGCCTGGAAAGCGTGTTAATGCGGATTCAATTTTTGGCGCTGAGGGATCCTTCCGAAAACTCGAC	67	-	chr2R	5488999	5489066	5488999..5489066	CG30339-RA,	FBgn0050339,	CG30339,	1	.
CG4159-RA	TGCTGCAGAAGGTTAAAGAAACCCTGAAGCTCTACGAGGGCACGAAGAACTTCCACAACTTCACCAGCA	69	-	chr3R	16417401	16417470	16417401..16417470	CG4159-RA,CG4159-RB,	FBgn0038811,	CG4159,	1	.
CG3157-RA	GCGCCTTTCTTGACCAGTTTCGACGCGAGGACATCTTCAAGGACGACCTCAATGAGCTGGACGAAT	66	+	chr2L	2974395	2974461	2974395..2974461	CG3157-RA,	FBgn0260639,	gammaTub23C,	1	.
CG7532-RA	CGCGTCACAAAAGACATCGATGTGGAGTAGTGCTTGTGATAGATGTTTTCATGATTTGTTCAAAATCCT	69	-	chr2L	14349192	14349261	14349192..14349261	CG7532-RA,	FBgn0261534,	l(2)34Fc,	1	.
CG17508-RA	GAAGCCTCAATTCCCCTTCCAATCAATGTGGACTCTGCGGAAACAACTCGATTCTCCCCCCAGCG	65	+	chr2R	1496564	1496629	1496564..1496629	CG17508-RA,CG17508-RB,	FBgn0039970,	CG17508,	1	.
CG12034-RA	CGAATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCTCCGACCACGAGGC	66	+	chr3L	3220120	3220186	3220120..3220186	CG12034-RA,	FBgn0035421,	CG12034,	1	.
CG3380-RA	GAAGGTGGAGGAGAATCGACGACGCGAAAAGGAACGACTGTCGGTGAAGAGTACGGAGAAGGAACGC	67	-	chr2R	18112616	18112683	18112616..18112683	CG3380-RA,CG3380-RB,CG3380-RC,	FBgn0034716,	Oatp58Dc,	1	.
CG31390-RA	TGTGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGATGACGACGATAGCGG	66	-	chr3R	6586046	6586112	6586046..6586112	CG31390-RA,	FBgn0051390,	MED7,	1	.
CG17242-RA	TCAATTGATGTGCGCGACAAACCTTGCTCTGAAGGGCAGACTTATGAGTGTGGGCGAGATCTGCG	65	-	chr2L	2268558	2268623	2268558..2268623	CG17242-RA,	FBgn0250841,	CG17242,	1	.
CG1092-RA	AATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGACCTGAGCCGGGAGTACAAGGACCTGCGG	65	+	chr3R	93297	93362	93297..93362	CG1092-RA,CG1092-RB,	FBgn0037228,	CG1092,	1	.
CG31643-RA	TCCGGAGAGGGTCCTTAACCTGGTTATGCAACTGAATCGCACAGTATGCCTGGACTTTCCCGAGG	65	+	chr2L	6040497	6040562	6040497..6040562	CG31643-RA,	FBgn0051643,	CG31643,	1	.
CG14542-RA	CCGTTTGTATCTCCCAGAAGCGAATGTTATATTAAAGAGAATGCTTGTGATTTTCGTTCCCTGCGTGTT	69	+	chr3R	21879517	21879586	21879517..21879586	CG14542-RA,	FBgn0039402,	vps2,	1	.
CG6485-RA	CCGGTGAATGCCACTGAAATACGCAAAGCACTGAAGTTCGAGTTCTCCAAGGATAACCAGCGGAGGGTG	69	-	chr3L	17313697	17313766	17313697..17313766	CG6485-RA,	FBgn0036706,	CG6485,	1	.
CG1635-RA	GCGGGAGGTACCAAAAGTTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAACAATACCGGA	68	+	chr3R	27415271	27415339	27415271..27415339	CG1635-RA,	FBgn0039854,	CG1635,	1	.
CG17267-RA	TTGGAATAGCTTCGTCCGCAGTGTTCAGCCCGCTTTCAGTTTCCGTAACCTGACCAATCCGTTGG	65	-	chr3R	16563868	16563933	16563868..16563933	CG17267-RA,CG17267-RB,	FBgn0038821,	CG17267,	1	.
CG4832-RB	GCATACTCGACCTGATTCTTGTCTCGCATAACCCTCCATTTTCCAATCATTTGCGTGTAGTGACTGCCT	69	-	chr2R	9327072	9327141	9327072..9327141	CG4832-RD,CG4832-RB,CG4832-RA,CG4832-RE,	FBgn0013765,	cnn,	1	.
CG13333-RA	CCCCGTCCTGAGCTGAGTTTAATGCAGCGTTTCGGTGACTTTGTGAAGCAGTACAACCTGTGGTCTGG	68	+	chr2R	9444059	9444127	9444059..9444127	CG13333-RA,	FBgn0033855,	CG13333,	1	.
CG32305-RA	GGCTGAAGGAGAGCTCGAGGAAAATGTATCTGAAGGCGATGAACTGGAGGTCTCGATACATGAGCGCCA	69	+	chr3L	2252623	2252692	2252623..2252692	CG32305-RB,	FBgn0052305,	CG32305,	1	.
CG4616-RB	CCCAGACTCCAAAACAGGCTGATCCACTAAGATCCCAAACGAAATCGAAGACTGTGTCGCCGATGGC	67	+	chr2R	9096944	9097011	9096944..9097011	CG4616-RA,CG4616-RB,	FBgn0033806,	FLASH,	1	.
CG5369-RA	CGAGGAGTCCGTGGACATAGACATTACCGACCTATCCGTATCCGAGAGCAATACGATCCTCGCTATC	67	-	chr2L	10353382	10353449	10353382..10353449	CG34367-RC,	FBgn0085396,	CG34367,	1	.
CG6476-RA	GGCCGAAGTAGACGCCTATGAGCCACTCAATCTGCAGATCGATCTTATACTGCTCGCCCAATATCGCGC	69	-	chr3R	11086895	11086964	11086895..11086964	CG6476-RA,	FBgn0003600,	Su(var)3-9,	1	.
CG5337-RA	GCTCCGGAAATGTGTCTTCTTTGGTGGCTTGGAAAAGAGTCTGCGAAAGACGGTGTGGCCATTCCTTCT	69	-	chr2L	10434132	10434201	10434132..10434201	CG5337-RA,	FBgn0032249,	CG5337,	1	.
CG11320-RA	ACGCAGACGATACTGAGCATCCAGAACCACGTCATCACCAAGAACCATCGCATCTCCATCTCCCA	65	-	chr2L	6618234	6618299	6618234..6618299	CG11320-RB,	FBgn0031837,	CG11320,	1	.
CG7914-RA	GTCCGTATTCGCCCTATTGGAGCGACTTTGTGGCCAAAGAGTTCCGTATCCTGGTGAAGCTGCAG	65	-	chrX	19087094	19087159	19087094..19087159	CG7914-RA,	FBgn0030995,	CG7914,	1	.
CG17919-RA	GCGGAGCTCCTATATATTGGTTTTCTCAAGATCTTATCGTCTACCGAATAATCTCTCCACAAAGATGCT	69	+	chr3R	2169778	2169847	2169778..2169847	CG17919-RA,	FBgn0037433,	CG17919,	1	.
CG31617-RA	AGCGGTGTCTGCAAAACCCAAAAAGACGGTGAAGAAAGCATCGGTTTCTGCTACCGCCAAGAAGC	65	.	.	.	.	.	CG33864-RA,CG33825-RA,CG33858-RA,CG33861-RA,CG33849-RA,CG33810-RA,CG33837-RA,CG33834-RA,CG33819-RA,CG33813-RA,CG33852-RA,CG33831-RA,CG33807-RA,CG33846-RA,CG33801-RA,CG33804-RA,CG33828-RA,CG33816-RA,CG33822-RA,CG31617-RA,CG33855-RA,CG33840-RA,CG33843-RA,	FBgn0053864,FBgn0053825,FBgn0053858,FBgn0053861,FBgn0053849,FBgn0053810,FBgn0053837,FBgn0053834,FBgn0053819,FBgn0053813,FBgn0053852,FBgn0053831,FBgn0053807,FBgn0053846,FBgn0053801,FBgn0053804,FBgn0053828,FBgn0053816,FBgn0053822,FBgn0051617,FBgn0053855,FBgn0053840,FBgn0053843,	His1:CG33864,His1:CG33825,His1:CG33858,His1:CG33861,His1:CG33849,His1:CG33810,His1:CG33837,His1:CG33834,His1:CG33819,His1:CG33813,His1:CG33852,His1:CG33831,His1:CG33807,His1:CG33846,His1:CG33801,His1:CG33804,His1:CG33828,His1:CG33816,His1:CG33822,His1:CG31617,His1:CG33855,His1:CG33840,His1:CG33843,	23	.
CG10881-RA	CAGCTGCCGCTATAAGTGATCCCAGCAAGACCGGAAAATATGTACCACCCTTCATGAAGGACGGCGGAG	69	+	chr3R	16234505	16234574	16234505..16234574	CG10881-RA,	FBgn0038796,	CG10881,	1	.
CG10790-RB	CCCTCAGAGTCAAATAGAATATAGTGTCGAAATGAAGTTGACAAAGTTATGGTTGCTTTTTGTGTGCCT	69	-	chrX	3143228	3143297	3143228..3143297	CG10790-RB,	FBgn0003086,	Pig1,	1	.
CG6763-RA	TATGGCCACAATTGAAAATGCCATTGGTGAGTACCATCGTCGGACGTGCATTCGGTTTGTGAAGCGCA	68	+	chr3R	19110896	19110964	19110896..19110964	CG6763-RA,	FBgn0039069,	CG6763,	1	.
CG18316-RA	CCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACTGGCCTCCAATCATATGGGAG	69	+	chr2R	3994195	3994264	3994195..3994264	CG18316-RA,	FBgn0033261,	CG18316,	1	.
CG6977-RA	CCTCGCCGTGGTTAAGTTCAACCGAATCTGTTCTGTTGCACCTTTGAGTTCGTCGTTGCGTTTTCATCA	69	-	chr3R	7719827	7719896	7719827..7719896	CG6977-RA,	FBgn0037963,	Cad87A,	1	.
CG11131-RA	CCCTTCCTAATACTTATTCACTCAGTTGTCACAGCATATGGAATAATAAAATTTATTCACAAAAAA	66	+	chr3L	22893302	22893368	22893302..22893368	CG11131-RA,	FBgn0037204,	CG11131,	1	.
CG3234-RC	CCGGGAGTTCCTCCAGGCCATTGATACGTACAACAAAGTGACTCATCTGAACGAGGACGACAAAGCCCA	69	-	chr2L	3501824	3501893	3501824..3501893	CG3234-RC,CG3234-RD,CG3234-RB,CG3234-RE,CG3234-RI,CG3234-RJ,CG3234-RK,CG3234-RG,	FBgn0014396,	tim,	1	.
CG17524-RA	GATGCCCTGGAGGGTGTCTACAAGTCCCTCAATCTGTTTCTGGAGAATGGCAATTATCTGGCCGGCG	67	+	chr2R	14288654	14288721	14288654..14288721	CG17524-RA,	FBgn0063497,	GstE3,	1	.
CG3319-RA	ATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACACTGGGAACACCCACGGAAGCTGAATGG	65	-	chrX	5202145	5202210	5202145..5202210	CG3319-RA,	FBgn0263237,	Cdk7,	1	.
CG5730-RA	TATCTATGAGCAATACCCCACTGTTCAAGTAGAAAATGCCAAAAACAAAAAAACGTTGCATTTCCCCAA	69	+	chr3R	16896077	16896146	16896077..16896146	CG5730-RA,	FBgn0000083,	AnnIX,	1	.
CG11680-RB	CTTCGCCTTGAGGAGCCCTATGCACAGCTGGTCAAAGTGGTCAAAGACCTTTGCGTTAAGAGCGC	65	-	chr2R	1863124	1863189	1863124..1863189	CG11680-RB,CG11680-RA,CG11680-RC,	FBgn0002774,	mle,	1	.
CG4287-RA	TGGGCATCACCTATGGGAGTTACGGAAGTTACCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCA	69	-	chr3R	11788930	11788999	11788930..11788999	CG4287-RA,CG4287-RB,	FBgn0038388,	CG4287,	1	.
CG31203-RC	TGGCATGAAACTGGCCGGAGTTATCCTGATTGGCATCGGATTTTTCCTCGTCATGTTTCCCGCCAAC	67	+	chr3R	16575980	16576047	16575980..16576047	CG42322-RL,CG42322-RM,CG42322-RF,CG42322-RG,CG42322-RD,CG42322-RE,CG42322-RH,CG42322-RI,CG42322-RJ,	FBgn0259222,	CG42322,	1	.
CG17054-RB	GCGCACAGCGGATGAATTCCAAAGTCATGACCCGTAAGCGAATGTCTCTCGAGATGAACCTCAGTGGC	68	+	chr2R	9030008	9030076	9030008..9030076	CG17054-RB,CG34438-RG,	FBgn0259876,	Cap-G,	1	.
CG4752-RA	GCATCACTGATCCGGAGATCCTTGAACTGCGCTATCCCATGATCCTGAAGAGATTCTGCCTTCGCACCG	69	+	chr2R	18369997	18370066	18369997..18370066	CG4752-RA,	FBgn0034733,	CG4752,	1	.
CG2930-RD	GCTTGTGAGCAGTACCATCTGGACAGCCCTGACCACCAAATGTAAGGAGAAAAAGACCAATCCGCGG	67	+	chrX	3771052	3771119	3771052..3771119	CG2930-RD,CG2930-RA,CG2930-RB,	FBgn0028491,	CG2930,	1	.
CG7044-RA	ACCGCCAGTTTAGCAATCAGGGCATGATAGATGGCTCTTTTCCCACAGTGACCTTCTCTAAGGAGCAGA	69	-	chr3R	16924670	16924739	16924670..16924739	CG7044-RA,	FBgn0038854,	CG7044,	1	.
CG31227-RA	GATTGGCACACCCCCCTGTTGCACGGGAGTTTTGGAGCCATGACTTTGCCAGTGCATTAATTAGC	65	-	chr3R	14598419	14598484	14598419..14598484				0	no match
CG33066-RA	TTGCTTGCTTTTATTGCATCTCTGCTCGATTTGCCCGCAATGGAGACGACGTTGGACTTGCCACC	65	-	chrX	19511189	19511254	19511189..19511254	CG17767-RC,CG12788-RA,	FBgn0027358,FBgn0031041,	Tim9b,CG12788,	2	.
CG12481-RA	GCCAGACGGAAATGGAACCGATGCTCATCAATGTGACCACAAGCAGACCCAAGCTGGTCATTGAGGAG	68	+	chrX	14081381	14081449	14081381..14081449	CG12481-RB,	FBgn0030542,	CG12481,	1	.
CG33105-RA	AAAGTCACTGCAAATAGCCGAAAATGCGCGACCAATTCATCAGCCTGGCCCTGATTCTGTGCGTC	65	.	.	.	.	.	CG31332-RE,CG33105-RA,CG33105-RB,CG33104-RA,	FBgn0260463,FBgn0053105,FBgn0069242,	Unc-115b,p24-2,eca,	3	.
CG3210-RA	GACCAACAACACTCCGGTTCACAATAACATCGTGAGTCCAGTGAAGCCGGTCAATCTGCTGCCCG	65	-	chr2L	2582239	2582304	2582239..2582304	CG3210-RA,	FBgn0026479,	Drp1,	1	.
CG6934-RA	ACCCCAAGCCCTTGCTACTGACACGAACATCATCGCCTCAATTGACAACATTGCCGACAACAAATGGCT	69	-	chr3R	10937669	10937738	10937669..10937738	CG42788-RC,CG42788-RB,	FBgn0261859,	CG42788,	1	.
CG3533-RA	GCACACGAAACTTTGGCCTGGTACAGCAATTAATGTTACGCTACGTGGCAATTATGTGACCCTGGAGGC	69	+	chr2R	20916272	20916341	20916272..20916341	CG3533-RA,	FBgn0004055,	uzip,	1	.
CG1847-RB	GCAGCAGGCACGTAACGTCCAGGATCGCATTCACATGCAGAAGCTCTTCTAGAACATAAGTTGCGTCAA	69	+	chrX	11764413	11764482	11764413..11764482	CG1847-RA,	FBgn0030345,	CG1847,	1	.
CG10726-RB	GGTAGACGGGAATTCCAAGCTAGAGTACTCCTACAGGCCGATGGACCAGATCTCCCAGTTTTGGGCC	67	-	chr2L	20059407	20059474	20059407..20059474	CG10726-RA,CG10726-RB,	FBgn0014127,	barr,	1	.
CG11260-RA	TTGCAATCAGACGTACTCAGTATGAAGTTTGTCAGAAGTTAAAAGGAAAGGAAAATTCTTTGGCCCT	67	+	chr4	611730	611797	611730..611797				0	no match
CG7622-RA	TCCAACTGCCATACTGTTTCCTGTCCAACTTTTTTCGCTCTTTCTTTCTTTTAACAGCGTCTGAGTTAA	69	.	.	.	.	.	CG7622-RA,	FBgn0002579,	RpL36,	1	.
CG14723-RA	TGCGGTTGCCTGAGAACATGAGTGAGCAGTATCGCATATTGGATGTCGACTGGTTGCACAGCATTTGG	68	+	chr3R	7613792	7613860	7613792..7613860	CG14723-RA,CG14723-RB,CG14723-RC,CG14723-RD,	FBgn0037950,	HisCl1,	1	.
CG5603-RA	ACCGAGCTAGCGATTGGTTCCCTCGTCGAAGTCTCGAATCCTGGAGTATGTGAAGATCTATATGGCGTT	69	-	chr2L	10297823	10297892	10297823..10297892	CG5603-RA,CG5603-RC,CG5603-RD,CG5603-RE,CG5603-RB,	FBgn0032210,	CYLD,	1	.
CG15060-RA	CCGCCTGCAACTGTCTGGGTATTACACGACTGTCTCCCGCACATTTCCACTACCAATACCAATACCAAT	69	-	chrX	18120854	18120923	18120854..18120923				0	no match
CG30018-RC	TCAGTTCGTCTTTTACAGTACTTTTGCCTACGGGATATCTGCTATACCACTCGGAATCATCATTTCGAT	69	+	chr2R	6679957	6680026	6679957..6680026	CG30018-RD,	FBgn0050018,	mthl13,	1	.
CG7608-RA	TGCGTGGCTGTTCAGGCTCAAACTCGTGAACAAGAAATTTGCCGTCAAGAAAACGAAACTTGCCGTCGA	69	-	chr3L	15645148	15645217	15645148..15645217	CG7608-RA,	FBgn0004590,	Eig71Ec,	1	.
CG5861-RA	GGCCACCCTGATCTGGCTCTTCACCCGTCACGATTTGAACAAGGCATTAAAGCCGCTGGTTAGTCTAC	68	-	chr2L	16306122	16306190	16306122..16306190	CG5861-RA,	FBgn0015338,	CG5861,	1	.
CR31485-RA	AGCTTAGTTGGTAAAGCGTTGGATTCTTAAATCATTGGTACACGGTTCAAGTTCATGCTCAGATG	65	-	chr3R	2644987	2645052	2644987..2645052	CR31485-RA,	FBgn0051485,	tRNA:CR31485:Psi,	1	.
CR31273-RB	ACTGACCTCGTCGAGCATTCAGATCCAATTGGAGGGCAAGTTCAATGGCATTGGGGATTCCAGGG	65	-	chr3R	12577505	12577570	12577505..12577570	CR31273-RB,	FBgn0020556,	bxd,	1	.
CG1090-RA	TTATGGTGTGGATGATCACCGTGATTGGGTCCACGCTTGCCATTCCGGACACCGTAATGGGTTTG	65	+	chr3R	191002	191067	191002..191067	CG1090-RB,	FBgn0037238,	CG1090,	1	.
CG17404-RA	GAGTATCGATCGCAGGGGAAAGACTTCGTTGGTGGAGGAGTTCCAGTAACCTTGACGGGATGGGG	65	-	chr3R	8050167	8050232	8050167..8050232	CG17404-RB,	FBgn0038001,	CG17404,	1	.
CG32779-RA	CGCCCAATCCTCGACGTCCTTCATCAACGATCTCTTTTCCTATGAGAGCAGTCTTCTGGTGCCCGC	66	.	.	.	.	.	CG32779-RA,CG42499-RA,	FBgn0052779,FBgn0260225,	CG32779,CG42499,	2	.
CG4147-RA	AAAGCGGTAGCAAGAAACAGACAAATGTTATATGTATAAGCGAATAATGTGGTCCCAATTCCTGCGATA	69	-	chrX	11696009	11696078	11696009..11696078	CG4147-RB,CG4147-RA,CG4147-RD,CG4147-RC,	FBgn0001218,	Hsc70-3,	1	.
CG10842-RA	CATAACCAAGGGGCTCGTCTACAACTTCCTACATCCATTCCTAAGGACGGGCTTGCTGACATCGACTGG	69	+	chr2R	5127977	5128046	5127977..5128046	CG10842-RA,	FBgn0015037,	Cyp4p1,	1	.
CG6376-RA	GGCTGTTTGACTTCGGTTCGGATGCCTATGGACCCTAAGAGGAGACGTCCACGAACACAATCACAACCA	69	-	chr3R	17447259	17447328	17447259..17447328	CG6376-RB,CG6376-RC,CG6376-RA,	FBgn0011766,	E2f,	1	.
CG2941-RA	CCGCCGCTAATCGACTAAAGACGTACATATATAATAATCATAACGCTAGGATGATGTTCAATCCAGATA	69	+	chrX	3833747	3833816	3833747..3833816	CG2941-RA,	FBgn0029686,	CG2941,	1	.
CG13570-RA	AGGTCCACCCAAAGCTGAGACCATTGCTAAGACCTCCAAAGAAGTCAAGCCTACCAAACAGACTGCGGT	69	+	chr2R	20048075	20048144	20048075..20048144	CG13570-RA,	FBgn0015544,	spag,	1	.
CG4795-RB	AAGCAGTTGAAGAGGTTCCCACTTCGGAAATCCCCGAACAATCATCGTCACCCTCAGATTCCGTTCCCG	69	-	chr3R	7988856	7988925	7988856..7988925	CG4795-RB,CG4795-RA,	FBgn0261714,	Cpn,	1	.
CG6426-RA	ATAGAGGTCGGTTGTTTACAGATAGTTGTGATACTGTTCAGTGACTTTTCAAATTGCATTTGCAAACAA	69	+	chr2R	12756927	12756996	12756927..12756996	CG6426-RA,	FBgn0034162,	CG6426,	1	.
CG17988-RA	ACGAAGGATTGCATGCCTATGTACGTCGCAAGCTGAGGGATTACTATGGTCCAGATCGGATAAACCGCA	69	+	chr2L	13917021	13917090	13917021..13917090	CG17988-RB,	FBgn0032536,	Ance-3,	1	.
CG1850-RA	AGCCCCAAGCATTCACCTTCCCAGAAAAAAAAGCTCCTCAACCTATCCAGGAAACTCCAGAGGTCG	66	-	chr2R	3147535	3147601	3147535..3147601	CG1850-RA,	FBgn0033154,	CG1850,	1	.
CG32219-RA	AAGAGAGTTACTTTGCATTAATCCTAGGACCTACTCAACCCCCGTCAAAAGACCCGGATGAGTTAATCA	69	-	chr3L	19943506	19943575	19943506..19943575	CG32219-RA,	FBgn0052219,	CG32219,	1	.
CG32833-RA	AGAGGACGACGAAAACGACTGCAACCGGACGACTCTTGGTGGTCATCCCGTGAACATAACCACAG	65	-	chr2R	18872692	18872757	18872692..18872757	CG32833-RA,	FBgn0052833,	CG32833,	1	.
CG14889-RA	ATTCGAATAGAACTCGTTCATACAAAGCATTATTGCCAAAGCTTCGATGTGAAACACAAGGCTAAGGGC	69	+	chr3R	12392969	12393038	12392969..12393038	CG42243-RD,	FBgn0259244,	CG42342,	1	.
CG2211-RA	ACACACGCATCTGGTACCATGCCAATTCAATTCCCAAGGGTCAGTTTTCGCTCACCGTTCAGTCCGAG	68	-	chr3L	1333425	1333493	1333425..1333493	CG2211-RA,	FBgn0035211,	CG2211,	1	.
CG3458-RA	TGGCGTCGTATTTCGTTTGAGGACACTGAATTGCATTTAGAAGAACAATAACTAAACAAGAAAAAAAAA	69	-	chrX	6178530	6178599	6178530..6178599	CG3458-RA,	FBgn0026015,	Top3beta,	1	.
CG3687-RA	CCGCTCTGCTGGACCTAACGGCCAAGGGATTCATACGCTTCATTACCAATGGATACCGCACCCTG	65	+	chr2R	12124631	12124696	12124631..12124696	CG3687-RA,	FBgn0034097,	CG3687,	1	.
CG7014-RA	CAAGTCGAATCGTTAAGCTGCGGATTTTCTGCATTTCCATGAATTGATGCCGACTTACATAAGTTGCTA	69	-	chr3R	10726195	10726264	10726195..10726264	CG7014-RA,CG7014-RB,	FBgn0038277,	RpS5b,	1	.
CG2092-RB	GCACCAAAAGAAAAGGGCCTACTGACGGTCAAGGACATAACCATTCCACTGCGACAGGAGTACGTGCG	68	+	chr2R	3481470	3481538	3481470..3481538	CG2092-RB,CG2092-RA,	FBgn0261385,	scra,	1	.
CG11079-RB	CCCAAACTGCAAGCCTAAACTTTCCCCAGACCGCTCCACTTCCATTTGTTTACGAACAGCGCTGC	65	+	chr2R	19246786	19246851	19246786..19246851	CG34423-RB,CG34424-RA,	FBgn0085452,FBgn0085453,	CG34423,CG34424,	2	.
CG31045-RC	GCTCGCCTTGAAGTGCAGGTGAACCGTCACAAAGAGGCTCTGGAAAAACTGCAGAACGAGGTGAC	65	-	chr3R	11896080	11896145	11896080..11896145	CG31045-RF,CG31045-RG,CG31045-RD,CG31045-RA,CG31045-RB,CG31045-RC,CG31045-RH,	FBgn0026059,	Mhcl,	1	.
CG6965-RA	GCGCCGGATCATCAACAGCCCTATCTTCCGATCCCAACCTAGTGCTGGTCAACAAATGTTGCGAGAAG	68	-	chr3R	7712350	7712418	7712350..7712418	CG6965-RA,	FBgn0037960,	mthl5,	1	.
CG13766-RA	CAAGTGCGTACATCACGGGAAAGTACCTCACTGGACTCTCCAATTTAAAGACCCTAGTCGCACCCGAA	68	-	chr2L	6565625	6565693	6565625..6565693	CG13766-RA,	FBgn0031834,	CG13766,	1	.
CG1340-RA	CGAGGTGGTTTCAATAGCCGTGTTGCTGTAGGTGGAAATGGCAATCGTTACCAAGGAGGAGCTCCACG	68	+	chr3R	26552730	26552798	26552730..26552798	CG1340-RA,	FBgn0039797,	CG1340,	1	.
CG41066-RA	GCTACGACCCTGCTACCGGCTTATTCCAGTTGGTCACTTCAGCTATAGTCACCGATCGTGGACACCA	67	.	.	.	.	.				0	no match
CG4311-RA	GAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGGTGCAAAAATCTGTGGGTCGCCT	69	+	chr2R	12227721	12227790	12227721..12227790	CG4311-RA,CG4311-RC,CG4311-RB,CG4311-RD,CG4311-RE,	FBgn0010611,	Hmgs,	1	.
CG17770-RA	TCGCACCCACAATCTGACCGAAGAACAGGTCAAGGATTTGGAGATTGCCTTTTCCCTGTTTGACGACCA	69	+	chr3R	21637754	21637823	21637754..21637823	CG17770-RA,CG17769-RB,	FBgn0039374,FBgn0011273,	CG17770,And,	2	.
CG1120-RA	CACATGGTTTTTCTGCCCCTCACTCGATCAGCGTTGGTTCAGTACTGCGTGGGAGCCATCATCAG	65	+	chr3L	3808258	3808323	3808258..3808323	CG1120-RA,	FBgn0035462,	CG1120,	1	.
CG32662-RA	GACGAAGCGCCGGAAGAGATAAGAATTAGCGATATGTTTGCTGTGCGTCTTTAGCCTGGTGGTGCT	66	+	chrX	11726935	11727001	11726935..11727001	CG43154-RC,CG43154-RE,	FBgn0262684,	CG43154,	1	.
CG17843-RA	ATTCGCTTGAAAATGGTCGAAGGGTGTTTAAGGCAAGGCGATACGTTGGCTGCATTGGATCGCGG	65	+	chr3R	17740657	17740722	17740657..17740722	CG17843-RA,	FBgn0038919,	CG17843,	1	.
CG17680-RA	ATCCGGACACTTGACAATCTCCATGTGGGAGTGCCTCCTAGTCGGGATAAATGTGTTGGCAACGC	65	-	chr2R	14035026	14035091	14035026..14035091	CG17680-RA,	FBgn0062440,	CG17680,	1	.
CG31176-RA	AGTGCGGCGATCTCACCTACAAGTCCTCCCGAAATATGCATCAACTACACAAGGCACCCGTGTGC	65	-	chr3R	17544072	17544137	17544072..17544137	CG31176-RA,	FBgn0051176,	CG31176,	1	.
CG14306-RA	ACTCAGAGTGGGGGATCAGTACTTCACATTGCCGAGTCAGAACCTTTGCATCCATCACCGAATGCCCAA	69	+	chr3R	14418009	14418078	14418009..14418078	CG14306-RB,	FBgn0038628,	CG14306,	1	.
CG17929-RA	AGGCTCGCAAATGCCACGCGAAACTATTGGGAAGCTTTAACCACTCAGTGGATCAGGAATTTGAGGAGA	69	+	chr3R	12152182	12152251	12152182..12152251	CG17929-RB,	FBgn0038415,	CG17929,	1	.
CG3599-RA	ACCCAGCACTCACAACTTGGATCACATGCAGCCGAATGGAACTCAGTCCAATCCTTCGACTTCCG	65	-	chrX	6111577	6111642	6111577..6111642	CG3599-RA,	FBgn0029848,	Btd,	1	.
CG5352-RA	AGGACTCGCGTACCTTCATCGGTACCTTCAAAGCCTTCGACAAACACATGAACTTGATCCTCGGCGACT	69	-	chr2L	10425994	10426063	10425994..10426063	CG5352-RB,CG5352-RA,	FBgn0262601,	SmB,	1	.
CG17824-RA	CAAAGTGATGGAACCTGTCTCTTGGAGAACGGGGAAAGAGTGGGAGTCTGCAACGGAAAGCACGG	65	+	chr3L	11976393	11976458	11976393..11976458	CG17824-RA,	FBgn0036234,	CG17824,	1	.
CG18330-RA	AATGGAACAGCGCAGTAGGCACTTTTATACATATTTAAAAGAGCTACCAGAAAAAGTATGCGCTTAAAA	69	+	chr3L	1555224	1555293	1555224..1555293	CG18330-RA,	FBgn0035231,	Cct2,	1	.
CG13432-RA	GGGCACACCTTTGACAATGGAAATCAATCTGGATGAGGACTCTGCACCTGTTTATGGTCTGGGTGTCAA	69	-	chr2R	16451688	16451757	16451688..16451757	CG13432-RA,	FBgn0028622,	qsm,	1	.
CG5704-RA	CCACCGGGAATGTACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGAGTACGGA	69	-	chr3L	2170425	2170494	2170425..2170494	CG5704-RA,	FBgn0026570,	CG5704,	1	.
CG31306-RA	CAGCACCCCCAAGACAAAGTCTCAGAGCGCCCTCAACCACACGCCCTCTAATTTGTCCACCGTTT	65	-	chr3R	10640174	10640239	10640174..10640239	CG33555-RC,CG33555-RD,CG33555-RI,	FBgn0053555,	btsz,	1	.
CG9753-RA	CTGTCCCATCTGAACTCGGCGGTAAATCCGGTCCTGTATGCCTATCACCTCAAGGACTTCAGGGC	65	-	chr3R	25962359	25962424	25962359..25962424	CG9753-RA,	FBgn0039747,	AdoR,	1	.
CG3744-RA	AGCTGGTGTACTTTGTGGGACTTCGAGATACGCCGCTAGAAAAACACCTGTACGTTGTGAGTCTGGA	67	-	chr3R	20699144	20699211	20699144..20699211	CG3744-RC,CG3744-RA,CG3744-RB,	FBgn0039240,	CG3744,	1	.
CG6920-RA	CGGGAATGCGGGAGATTCACGAGCGTTGCTATACAGATCTATTGGATCTATGTCGAACCATTGCCAGCC	69	-	chr3R	7563304	7563373	7563304..7563373	CG6920-RA,	FBgn0002906,	mus309,	1	.
CG18495-RB	TTTCGGGCTGAGAATGACAATCTGAATTTTGCACAGTAGGTTCGATTTGAAGCGACATTTTCCCTGCTA	69	.	.	.	.	.	CG18495-RB,	FBgn0263121,	Prosalpha1,	1	.
CG4206-RA	ACGAACGATTGCATCCATCAATCCATCCTTTATCCATCAACCATTCTAGCGCTTAAGTTGTCATTTTTG	69	+	chrX	5220653	5220722	5220653..5220722	CG4206-RA,	FBgn0024332,	Mcm3,	1	.
CG32356-RA	CGGTCACCATTTCGAAATCAACTGATTGATTGACCCGCTCCTGTCTTCCGAAACCTTCGAATCTATCGC	69	+	chr3L	8383482	8383551	8383482..8383551	CG32356-RA,	FBgn0001253,	ImpE1,	1	.
CG33316-RB	GGGGGATCGCGATTCCACGACATTGACAACGGTTACCTTTCGGAGGGTAGCAGCGGTCTAAATGG	65	+	chr2L	19910274	19910339	19910274..19910339	CG42589-RC,CG42589-RB,CG42589-RD,CG42589-RH,CG42589-RF,	FBgn0260966,	sick,	1	.
CG5295-RA	CCAGCCTCACTTCGATGCCACAGGACTTCTTCATTCCAGCCGCTTATATGGACCCCGTGTTTCAATCCT	69	-	chr3L	14770789	14770858	14770789..14770858	CG5295-RA,CG5295-RB,	FBgn0036449,	bmm,	1	.
CG17839-RA	AGGACACAACAATAAGCATTAATGGCCTCAAGAAGGATGTGCTCTACGAGTTGGTGGTGAAGGCTGGCA	69	+	chr3L	14873538	14873607	14873538..14873607	CG17839-RB,	FBgn0036454,	CG17839,	1	.
CG8036-RB	ATCAGCTGGAGAAGAACTGCATCACCGTCCGTGTGATCGATCCGTTCACCGTGAAGCCATTGGAC	65	+	chr3R	4498898	4498963	4498898..4498963	CG8036-RB,CG8036-RC,CG8036-RD,	FBgn0037607,	CG8036,	1	.
CG4758-RA	GACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCTCCACTACTGGATATTCGGCTTCATC	69	+	chr2L	10011240	10011309	10011240..10011309	CG4758-RA,CG4758-RB,CG4758-RC,	FBgn0011584,	Trp1,	1	.
CG10205-RA	CGTAGTCGTAACTATAATATTATAAATGCTTATTGCCGCAATAAACCCATGTCTAAAATTAGCTAA	66	+	chr2R	10721384	10721450	10721384..10721450	CG10205-RB,CG10205-RA,	FBgn0033970,	CG10205,	1	.
CG11966-RA	ACGGACAATCCAAATGGTCTGATGATCAATCCGCGCTACTTGAGTAATCCGACCAACAATCAGGCGA	67	-	chr3R	4778299	4778366	4778299..4778366	CG11966-RA,	FBgn0037645,	CG11966,	1	.
CG7465-RA	GCGCCGCCACTAAATCATCCGATAAAGGCTTCACTAGGTGATCGAATTGTGCTCATTTTTGAGTGCAGA	69	+	chr3L	4481362	4481431	4481362..4481431	CG7465-RA,	FBgn0035551,	CG7465,	1	.
CG5744-RB	ACAATGGCCGATTACCGATAACAGACCCGATTCCAATTCCACAAAAACCAAGCGCGCAATAAACTGAAA	69	+	chrX	18064197	18064266	18064197..18064266	CG5744-RB,CG5744-RC,	FBgn0030897,	Frq1,	1	.
CG6401-RA	ACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATTTGCTAGCTGGCATCATTCCACGG	68	-	chr2R	13626205	13626273	13626205..13626273	CG6401-RA,	FBgn0034270,	CG6401,	1	.
CG1722-RA	GGGTAAGGATTCAAGGACCACCAAGATGCCCAAGAAAATGAAGCCCTCAAGCGAAAAGCCTGCAAGCG	68	-	chrX	21121631	21121699	21121631..21121699	CG1722-RA,	FBgn0031168,	CG1722,	1	.
CG14431-RA	AGCCCGATGAGATCAAGACCGACTCGCAAGGCTCAAGCTACTTCACCTCCATCATCGATATCGAGCCAA	69	+	chrX	6858179	6858248	6858179..6858248	CG14431-RB,	FBgn0029922,	CG14431,	1	.
CG30111-RA	TCAGCAGCTACTCCATCACTACTACAGCCCAGGTGATCAGGTCAAGGATCAGGGATTGGTTTTGCCCC	68	+	chr2R	13704952	13705020	13704952..13705020	CG42311-RK,	FBgn0259211,	grh,	1	.
CG11221-RA	TCCAGAAGGAGTTCCACTACAACTACGAGCTGTCGCATCACCATCACATACTGAGCGCATATGCGGT	67	+	chr2L	6754350	6754417	6754350..6754417	CG11221-RA,	FBgn0031855,	CG11221,	1	.
CG10610-RA	CCCAAGGGCAAGTTCATACCCACCAACATGTTCCAGGCAGAGTTCATGCACTACCCCAAACAGCAG	66	+	chr3R	1682740	1682806	1682740..1682806	CG10610-RA,	FBgn0028436,	ECSIT,	1	.
CG1499-RA	GCCGGGAACACTTAGCTGGGAACAAACGCAATATGCCTCGAAAGCTTCAAAAGATTCGATGAGACTTGA	69	+	chr3R	27391137	27391206	27391137..27391206	CG1499-RC,CG1499-RD,	FBgn0039852,	nyo,	1	.
CG2056-RA	AACGGAGGATGAGCATTCGGTCTACCCATTGCATACCCACTCGTGTGTATCTGCACCTTCTGCTGG	66	-	chrX	8466881	8466947	8466881..8466947	CG2056-RB,CG2056-RA,CG2056-RC,	FBgn0030051,	spirit,	1	.
CG10874-RB	CGCAAACTCCTGAAAGGTGGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCCTCGGACTGCTGGAC	67	.	.	.	.	.				0	no match
CG32150-RA	GGAACACGCTCTAACACGTCAGCTATCGGAAATGTGCCGACTGTACCGATTGCAGAACGAACGGTA	66	-	chr3L	15831259	15831325	15831259..15831325	CG32150-RB,CG32150-RA,CG32150-RC,CG32150-RD,	FBgn0052150,	CG32150,	1	.
CG10122-RA	GGTGCCAGGTCAAGTTGAATCTGAGTGTGCGGTACCAGAAGCCCGATCTTACCTCCATAATCCGGG	66	-	chr2R	10483681	10483747	10483681..10483747	CG10122-RA,	FBgn0019938,	RpI1,	1	.
CG18547-RA	GCAAGATTCATTGGAGTGTCCGCTTACCCGATTTCGGTGCTTAAGGAGTTCCTGACCCGAACAGCCG	67	-	chr3R	7805311	7805378	7805311..7805378	CG18547-RA,	FBgn0037973,	CG18547,	1	.
CG32247-RA	ACTTCGATAACATTCGACAACATTTGATAACTTCGATAACATTCCACGATTATTATATTACACTAAAAT	69	+	chr3L	4619375	4619444	4619375..4619444				0	no match
CG15302-RA	AATCGAAGTGTGGCCTGATGCGCGGGAAATCATCGAGGTGGAGAACCAAAGTGACCAAATGCTCAGTC	68	-	chrX	10353241	10353309	10353241..10353309	CG15302-RA,	FBgn0030204,	Or9a,	1	.
CG3576-RB	TGTCCGGTGACATACGTTCCAGTGATAGTGAGGATCTCACAGACAGTTCGGGGAATGCACGTCTGACCA	69	-	chrX	6152469	6152538	6152469..6152538	CG3576-RA,CG3576-RB,	FBgn0040918,	schlank,	1	.
CG3524-RA	TCGCGAATATCATGGGACTGAGGGATGTAAAGAGTGTCTCCGATAAGACCACCCTCTTCGATCTTGGCA	69	+	chr2L	3053844	3053913	3053844..3053913	CG3524-RA,	FBgn0042627,	v(2)k05816,	1	.
CG6392-RA	CCTCGAGGAAAAGTTGTGCTCGGCTAACGATATTGTGGCTAAGCTTGAGACGGAAATAGCCGCGTTGCG	69	-	chr2L	11262280	11262349	11262280..11262349	CG6392-RA,CG6392-RB,	FBgn0040232,	cmet,	1	.
CG31938-RA	AAAGACACACGCGGATTTTTTGTTTGGAGTTTTCAAATCGTAAAAGCAACATTAAAATGAGCGCG	65	+	chr2L	1728772	1728837	1728772..1728837	CG31938-RA,	FBgn0260648,	Rrp40,	1	.
CG11388-RA	GTACTTCAGCTCAACCCCGAACTCGTACTACAGCGACTCCCTCTTTTTCCTGTCCCTCGGCCTTC	65	+	chr2R	19910821	19910886	19910821..19910886	CG11388-RA,	FBgn0034959,	CG11388,	1	.
CG1764-RA	GAGAGGTTCAACCGACCGGAGTGAGAAGCATTGCCATGAGAAACATGCACAACAGGCCCAAGGAG	65	-	chrX	13188923	13188988	13188923..13188988	CG1764-RA,	FBgn0030467,	CG1764,	1	.
CG1774-RA	ATGCAGTCTACGATGATTGCTCCATTTCCGGAGAACAGGAATGCGCAGAACACCATCTTTGGGGGCT	67	+	chr3R	27419843	27419910	27419843..27419910	CG1774-RA,	FBgn0039856,	CG1774,	1	.
CG14899-RA	AGCGCTGTTCCCTATCCATTAACACGTCTCAATCCTGGAGTGCACAACATCCGGTGAGAGGACTACCAA	69	-	chr3R	12309801	12309870	12309801..12309870	CG14899-RA,	FBgn0038438,	Der-2,	1	.
CG4139-RA	ACACGGAGGACATATATGAGGGCATCTACAACACATACGTTCTGGACACGGACTACGACACCTGGGG	67	+	chrX	11685202	11685442	11685202..11685217,11685390..11685442	CG4139-RA,CG4139-RB,	FBgn0030334,	Karl,	1	.
CG14680-RA	GCCGTGGACATTCGGCATTTGGTGATCGAATCGATTTGCTCTGTTGCCCTGAACACACATCTTGGCTTA	69	+	chr3R	6261337	6261406	6261337..6261406	CG14680-RC,	FBgn0037817,	Cyp12e1,	1	.
CG1078-RA	TGGCCAGCCTCACTCAGAATGTGAATCAGAATGCCCCCATTGGAATCCTCACAGATGGCGGTATG	65	+	chr3R	311632	311697	311632..311697	CG1078-RA,	FBgn0037255,	Fip1,	1	.
CG7598-RA	AGGTCCCCACTGGCAGATAGCGAAGATTCCCTTCTCCAAGTTCTTCCTGTCTTCCAAGGGACGTG	65	+	chr3R	25563458	25563523	25563458..25563523	CG7598-RA,	FBgn0039689,	CG7598,	1	.
CG3361-RA	ATATCAGTGTCCAGTCGACAGGAATGCGTATGAAGACGGTGCCAATGAGGGACACGGGCTACTCG	65	-	chr3R	23104232	23104297	23104232..23104297	CG3361-RA,CG3361-RB,CG3361-RC,CG3361-RD,CG3361-RE,CG3361-RF,CG3361-RG,	FBgn0039507,	mrt,	1	.
CG5248-RA	CGGACAGAATTCCTTGAGCGATCTGCACAGCTCTAGGTCATCTTTGTCCTCGTTTGATGCGGGCACA	67	-	chr3R	18447533	18447600	18447533..18447600	CG5248-RD,CG5248-RA,CG5248-RB,CG5248-RC,CG5248-RF,CG5248-RG,	FBgn0020278,	loco,	1	.
CG7937-RA	CCAGTGAGAATCTGCCCTTCAGCATATCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCAC	65	+	chr3R	17328010	17328075	17328010..17328075	CG7937-RA,	FBgn0004863,	C15,	1	.
CG30070-RA	CCGCTGGTTGCCAAAACTGCACAGTGAAGGAGGAAAATGAGGCAGGTAGTGAAGAAGTGGAGGAAATCA	69	+	chr2R	10256011	10256080	10256011..10256080	CG34443-RA,	FBgn0085472,	CG34443,	1	.
CG1796-RA	GCCGCAAATTCTAGACTCCTAGTTTGTAAGCCTATCCATAATAGAATACGATTTTCCAAACGATTTCAT	69	+	chrX	11916686	11916755	11916686..11916755	CG1796-RA,	FBgn0030365,	Tango4,	1	.
CG3409-RA	TCGATCCGGAACTCCAACTTCCTTAAGGATATGCGCATTCACCGCAACTCGATCCACTACCGCGG	65	-	chr2R	2589988	2590053	2589988..2590053	CG3409-RA,CG3409-RB,	FBgn0033095,	CG3409,	1	.
CG3589-RA	AGGTACCGGGACCTTCATAAGAGTACACAACAAGCGCTTTATCCTCACTTGTGCACATGTGGTGGGACA	69	+	chr2R	20672196	20672265	20672196..20672265	CG3589-RA,	FBgn0035065,	CG3589,	1	.
CG13616-RA	TCCCGGCGAGCTTTTTACGATGAGGTGCAGTCTTTATTTGATAACATGGGTTTCAATGGTCGTTCGTGT	69	+	chr3R	20219046	20219176	20219046..20219090,20219151..20219176	CG13616-RA,	FBgn0039200,	CG13616,	1	.
CG32675-RA	TCTTCGAGACATTCGTGATCGGCATGGTGTGCTACTTTGTGGTGTCCATCGTTAACTCCTTGGCCCA	67	-	chrX	10654636	10654703	10654636..10654703	CG32675-RB,CG32675-RA,CG32675-RC,CG32675-RD,	FBgn0052675,	Tango5,	1	.
CG9953-RA	GCCAGTGGACATATCAGACCTGCCACGAATTCGGCTTCTATCAGACCTCGGATAACCCGGCTGAC	65	+	chr3L	6964153	6964218	6964153..6964218	CG9953-RA,	FBgn0035726,	CG9953,	1	.
CG11523-RA	CAGTCGTGGCTTCAAGATCGTCTCCTCCCAGTACGACACCATAGACGAGGACAGCCGGATCTCTG	65	-	chr3L	22259392	22259457	22259392..22259457	CG11523-RA,	FBgn0037156,	CG11523,	1	.
CG1472-RA	CGCCATGGATTGCATGAAAACGCTACCGCTGGACCAGCTAATGAAGTACGTGTACCCGGAGCTGTACAA	69	-	chr2R	5765265	5765334	5765265..5765334	CG1472-RA,	FBgn0033460,	sec24,	1	.
CG18625-RA	CCGTTCACCTACCCGGGATCACCTGTTCCCTCTAACTTCTTTGACTTCGAGGAGGTAGTACCGCCAC	67	+	chr2R	11303309	11303376	11303309..11303376	CG34365-RC,CG34365-RF,CG43223-RG,CG43223-RI,	FBgn0262868,	CG43223,	1	.
CG5277-RA	AGACCGGAAAGACAAAGCGAAAGGCATGGAAGCGCATGGTCACAAAAGTCACATTCGTCGGTGAGAACT	69	+	chr2L	10409172	10409241	10409172..10409241	CG5277-RA,	FBgn0025366,	Ip259,	1	.
CG3114-RA	CGCCTGGATTAAGCGATTGACGTGCCATGTTTTCTGGGCATCGTAGCTCTCCTGACTGACTACCCG	66	-	chrX	163110	163176	163110..163176	CG3114-RH,CG3114-RA,CG3114-RC,CG3114-RD,CG3114-RE,CG3114-RF,CG3114-RG,	FBgn0005427,	ewg,	1	.
CG11181-RA	CAGCAGGAGGTTCACTCCCAGATTGGCGAGTCAAGACCCAAACGGAGCGAATATTGAGCCAAGGC	65	+	chr2L	6674468	6674533	6674468..6674533	CG11181-RB,	FBgn0000392,	cup,	1	.
CG7578-RA	TAGGCGTGTGTTCATGCGCATCGGTCCAGTATTCAATATAATGAGCGTTAAATAGTCACGGAGGAGCCG	69	+	chr2L	13799090	13799159	13799090..13799159	CG7578-RA,CG7578-RB,	FBgn0028538,	sec71,	1	.
CG6281-RB	ACGAAACTATGCCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGTGCCTGCA	68	-	chr3R	6030327	6030395	6030327..6030395	CG6281-RB,	FBgn0025879,	Timp,	1	.
CG32534-RA	GCATGGCACAAATAGCACCATAAATACCATCGACGCCACCACGACCTCAACCAACAACAGCACCACC	67	+	chrX	19420878	19420945	19420878..19420945	CG42687-RG,CG42687-RH,CG42687-RI,	FBgn0261573,	CoRest,	1	.
CG4846-RA	TCGGCAGGATCAACAGCAGATGTATCAGGCAATTAACATGATTCAATTGTCACACAACTCCAGTGCCAT	69	+	chr2L	16080856	16080925	16080856..16080925	CG4846-RA,	FBgn0013433,	beat-Ia,	1	.
CG10734-RA	TGCCCGGATTCAAGCGGCAAAACTCAAGAAGGAGACATTGGAAGCCAATATGAGAAAGAGCAAACAGGA	69	-	chr2R	12045127	12045196	12045127..12045196	CG10734-RA,	FBgn0034082,	CG10734,	1	.
CG7709-RA	GACCTTCTTCATCCTACGAAGCACCAGTTGCACCTCCATCGTCCTCGTACGGAGCTCCTTCCTCT	65	-	chr3R	14514741	14514806	14514741..14514806	CG7709-RA,	FBgn0038642,	Muc91C,	1	.
CG33299-RA	ATCCCGGTGCCTAAGCCCTATCCTGTTCCGTTTACCATCTACAAACACGTCCTGCAAAAGGAGCA	65	+	chr2L	9657151	9657216	9657151..9657216	CG33299-RB,CG33299-RC,	FBgn0053299,	CG33299,	1	.
CG7004-RA	GCAGCAATGTACATTCGTTAGGTGGACTTCAGTTCCAGGAAGATGACGTGTGGTCACAAGAGGAGGACG	69	-	chr3L	307787	307856	307787..307856	CG7004-RB,CG7004-RA,CG7004-RC,	FBgn0004373,	fwd,	1	.
CG6522-RA	TACAACCGACTAATTTGATTGGCTTTTTAAATGAAAACGACGCCTAAATATTTACAATTCCAACCGCTT	69	-	chr2R	13353515	13353584	13353515..13353584	CG6522-RA,	FBgn0034223,	CG6522,	1	.
CG7524-RB	TCGGAGGTGCCGTATCGAGAGGTGCAAGACTAAACAGAGTCCAGCCTATTCACACACATCACCAACACT	69	-	chr3L	4594604	4594673	4594604..4594673	CG7524-RE,CG7524-RB,CG7524-RJ,CG7524-RF,CG7524-RG,CG7524-RH,CG7524-RI,CG7524-RC,CG7524-RD,	FBgn0262733,	Src64B,	1	.
CG10321-RA	CCGATGTGCACCATTTGCAATCGAACCTTCAAGTCCAAGGCGATCTTGTACAGGCACAGACAGACGC	67	+	chr2R	17524969	17525036	17524969..17525036	CG10321-RA,	FBgn0034643,	CG10321,	1	.
CG15040-RA	GGGAGCGCCGAGATGCAACAGCAAATAAACAGACCTCCCGATCCACGACAGACTTTCGAACACAATGTT	69	-	chrX	18502123	18502192	18502123..18502192	CG15040-RA,	FBgn0030940,	CG15040,	1	.
CG17795-RA	TCAGTCGGCACTATTGGAAATGTCTTACCAATCCCTGTGCCTCGATGAACATTCGGTCAGAACGTGCGT	69	+	chr3L	5599073	5599142	5599073..5599142	CG17795-RB,	FBgn0035623,	mthl2,	1	.
CG31258-RA	TGGAGTTTTTGCAGCGTAGTCAGAACATGTCAAAGAGTCGTCCCCCGGATGAATCAAGCGCGGATGTG	68	+	chr3R	4393269	4393337	4393269..4393337	CG31258-RA,	FBgn0086697,	Cenp-C,	1	.
CG18048-RA	CCACCGTATTGCAGGAACAGAAGTTGAGTCACTCACAGGTGGTCCTCATCGATCGAATGTCCCTGCGG	68	+	chr3R	2172569	2172637	2172569..2172637	CG18048-RA,	FBgn0037435,	CG18048,	1	.
CG10597-RA	CGAGGAGCGCTAAGGATCTTAAAGAGTTAGTCTCGTTAACGATATCCTTCAAGGTCTTTGTGTGC	65	-	chrX	17124951	17125016	17124951..17125016	CG10597-RA,	FBgn0030832,	CG10597,	1	.
CG1480-RA	CTGGTCCATGGAGTTGAGGGAAAAAGTGCTGGAAATGTCCAAGCGAAATAATGGCCAGGAGAAACCACA	69	+	chr3R	27019372	27019441	27019372..27019441	CG1480-RA,	FBgn0004389,	bnk,	1	.
CG14528-RA	GCAGCGACTCTGCAGGAATCATTGTCCCTCTATACGGTGGCCGATCTTCAAGAGAAATACAGCGACCAT	69	+	chr3R	24702129	24702198	24702129..24702198	CG14528-RA,	FBgn0039611,	CG14528,	1	.
CG5646-RA	ATTAGGAGCCTTAGTTTGTATGCTGTGTACATTGTTGTCAACTGAGAATGAGTGTGATCGAAAAATGCA	69	-	chr3R	23385274	23385343	23385274..23385343	CG5646-RA,	FBgn0039525,	CG5646,	1	.
CG31342-RA	GGTCAGTGCCTGGGTCTGATTCGGGATGGAAACACTTCGACAATCGTGGATGTGGTGCCAAATAGTTT	68	+	chr3R	8816125	8816193	8816125..8816193	CG31342-RB,CG31342-RC,	FBgn0051342,	CG31342,	1	.
CG33250-RA	AAAGGCTCTTCGATGAATCCGTCAGGTCGGACTGGTGGAAACAGCTTAATCTGTGCAGCGATGGC	65	-	chrX	15752898	15752963	15752898..15752963	CG33250-RA,	FBgn0065035,	AlkB,	1	.
CG5912-RA	GCGTATTGGAAAGAGTCGAACAGAGCCTAAGGATGACCAGGCCACTGATCCATTGTCACCCTCGACGC	68	-	chr2R	9342485	9342553	9342485..9342553	CG5912-RA,	FBgn0000119,	arr,	1	.
CG31732-RA	GTCAGACCTCGATCAATCCTGCCTAATCTCCGTTGATCCCGAATCAGGGCCCTGTGATCTGGACG	65	-	chr2L	15262174	15262239	15262174..15262239	CG31732-RB,CG31732-RC,CG31732-RD,CG31732-RF,CG31732-RH,CG31732-RJ,CG31732-RL,	FBgn0045842,	yuri,	1	.
CG1427-RA	CGCCGTCACTACAACTTCGGTCATGGTATCGGCAGATCTGGAGACTTACTAGAGGCACAACCCAAGGC	68	+	chr3R	1427646	1427714	1427646..1427714	CG1427-RC,	FBgn0037347,	CG1427,	1	.
CG32091-RB	AGCGACCTAACCGAAAACGGGAAGCTGATCTATGTGGTCAGTCAGTCTGAGCAATTGGCACCTCAGC	67	+	chr3L	11634407	11634474	11634407..11634474	CG32091-RB,	FBgn0052091,	CG32091,	1	.
CG32030-RA	CGTAGATACCCGCATCACATCCGAGATAATACCATCCCCCAGTGACGTCACAAGTCGGGCACTACGC	67	+	chr3L	8791313	8791380	8791313..8791380	CG42610-RE,CG42610-RD,CG32030-RA,CG42610-RC,CG42610-RF,CG42610-RG,CG42610-RH,	FBgn0261259,	Fhos,	1	.
CG15009-RC	AACAAAAGGCTATTGGATTGACGACGGAAATTCATCTAGTTAGTTAGATAGATCAAATGCCTTCGAAGA	69	-	chr3L	4224746	4224815	4224746..4224815	CG15009-RA,CG15009-RB,CG15009-RC,	FBgn0001257,	ImpL2,	1	.
CG5660-RA	GCGGGCATTATTACGCCTTCAGAGTTAAAGGCCTCCACGATTGGAATGACGCAAATGTTCCCCAATGGC	69	-	chr3L	8955653	8955722	8955653..8955722	CG5660-RA,	FBgn0035942,	CG5660,	1	.
CG6438-RA	TCCGTTGAGTGTCCTAGCGAACTCTGTAGTCGATATCGAAGGCAACCACAAAATAAGAACATAGAAAAC	69	-	chr3R	22524528	22524597	22524528..22524597	CG6438-RA,	FBgn0023179,	amon,	1	.
CG31499-RA	GAGGATGTGATAGCCCGGCACAATCTGTTCCGCAATCACGACGATATGGACCTGTACGAGGGACC	65	+	chr3R	16045659	16045724	16045659..16045724	CG34139-RB,CG34139-RC,CG34139-RD,	FBgn0083975,	CG34139,	1	.
CG14355-RA	ACCGTTAACCATGGCACCCAGACATCCAAGAAAGACCAGATGCCACTACCTCCAAAGTATCCCATCCGA	69	-	chr3R	9975052	9975121	9975052..9975121	CG14355-RA,	FBgn0038208,	CG14355,	1	.
CG9903-RA	GTGCGGTGACGGAGACATATCCAAAACCCCTGCCAATAACAGTGCTCAGAACACAGGTGGTGGAC	65	-	chrX	16434376	16434441	16434376..16434441	CG9903-RA,	FBgn0030756,	CG9903,	1	.
CG9782-RA	ATATATAAAATCAATTATAAATACACAAGTGTTTTTTTTCTAGTTTAAGTTTAAGACGCGCGCGT	65	-	chrX	16515458	16515523	16515458..16515523	CG9782-RA,	FBgn0030763,	CG9782,	1	.
CG4835-RA	CCCACGGAATTGACCTGCATGGATCCCGAACTAGCTGGTTGTAGCACTAAGTTAACCACACCAGGGC	67	+	chr3L	5475944	5476011	5475944..5476011	CG4835-RA,	FBgn0035607,	CG4835,	1	.
CG31912-RA	TGTAATGTGCAATAGATGTTAGATCTCAATCACAAGGTCTTTCTGTCAAGGAACTGAAGGCAACT	65	+	chr2L	5769945	5770010	5769945..5770010				0	no match
CG4786-RA	CCCGCAATGCTGTTCAGTGCAATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGGGACAGTGCT	69	-	chr3L	20522414	20522483	20522414..20522483	CG4786-RA,	FBgn0037012,	Rcd2,	1	.
CG1840-RA	TGGGAGAAACGTCCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATATGGTTCGCCGTCAAA	69	+	chrX	11782615	11782684	11782615..11782684	CG1840-RA,	FBgn0030351,	CG1840,	1	.
CG10772-RF	ACGAGGAGACATTCAGCTCTTTTTGAGGTCTCCCGCAAACACCAGTGTCACGCTCCTAACGCCTAG	66	-	chr3R	21182118	21182184	21182118..21182184	CG10772-RF,CG10772-RD,CG10772-RE,CG10772-RB,CG10772-RC,CG10772-RA,	FBgn0004509,	Fur1,	1	.
CG33274-RA	CGTTCATCCCTCCTGTCATTCGTACAAGCCCCAGTCCTACCGCCAATCCACTGATTCCATCTAGCC	66	+	chr3L	8273087	8273153	8273087..8273153				0	no match
CG32820-RB	GATCTGCGCAACAAAGTCAATGCCCTGTTCATCGACCGAGAGAAGTGCATGAGTCTCCGGCGCTC	65	.	.	.	.	.	CG17450-RB,CG17450-RA,CG32820-RA,CG32820-RB,CG32819-RB,CG32819-RA,	FBgn0040028,FBgn0052820,FBgn0052819,	CG17450,CG32820,CG32819,	3	.
CG14841-RA	AGCAAGCGAAAAGAAGCAGACTGCAAGTGGAGGATCATCGGAAGGGTGTGAAACAAGTTCTGCTGTGCA	69	-	chr3R	10087851	10087920	10087851..10087920	CG14841-RA,	FBgn0038218,	CG14841,	1	.
CG8016-RA	CGACGCGCACCAAAAGTTGAAGAATGGCCGTAAGATTTGCTGGAACTTTAGAAGGGGACGCTGCC	65	-	chr2R	5054594	5054659	5054594..5054659	CG42382-RA,	FBgn0259728,	CG42382,	1	.
CG15768-RA	TGGCTTCACCGGATGCCCAATTCAATGAGGTGGTCGCATTATTCGGTGAGTCAAAACACATACCCCGG	68	-	chrX	5670192	5670260	5670192..5670260				0	no match
CR32901-RA	ACACCTTATTTAAGCCAAACAGTTATCCCTGTCATAAGAATAATTGATGATATATTCAGCTGACA	65	+	chr2R	13590389	13590454	13590389..13590454	CR32901-RA,	FBgn0063373,	snoRNA:snR38:54Ec,	1	.
CG2926-RA	AGCGTGGTGTCGAGTTCGCAGCACATACCTTCAATTTCCAGTCCCACACCTCCTTCTAAGAAGCTCACT	69	-	chr3R	1406839	1406908	1406839..1406908	CG2926-RA,	FBgn0037344,	CG2926,	1	.
CG7565-RA	GAGACGGATTCCGATGTCCTTTTTGAGACCCGCACCAAGTCCAATGGTCTGGGCAAGCACAAGTC	65	-	chr3L	8081206	8081271	8081206..8081271	CG7565-RA,	FBgn0035833,	CG7565,	1	.
CG31076-RA	CAGTCGCTGAGTAAACTGAAATTTCTGGATCATGGACTGGTTCAACGCACCTACAAATACGAAAG	65	-	chr3R	22814811	22814876	22814811..22814876	CG31076-RB,	FBgn0051076,	CG31076,	1	.
CG3630-RA	CCAAAGGAGCCAGTTTCCTCAATTTGTTAACCATTACTCTATGGAAATGAACTACGGTTTCCCACTCAC	69	+	chrX	2066181	2066250	2066181..2066250	CG3630-RA,	FBgn0023540,	CG3630,	1	.
CG5390-RA	TGGATGCTGGCCATTCTCCGGGAAGAAGGCAACCTTAACCTGTACGAATGTGGAGGAGCATTGATAGCT	69	-	chr2L	10304887	10304956	10304887..10304956	CG5390-RA,	FBgn0032213,	CG5390,	1	.
CG8953-RA	GCGCCATCATCCACTCCTATCTTCCCGACCTCATTGACAAAACATACCTCGCCAAAAAGAAGCCCGAAG	69	-	chr3R	12801785	12801854	12801785..12801854	CG8953-RA,	FBgn0015008,	Actn3,	1	.
CG8806-RA	GGCTCCGGGAGTTAAGGAGTTTGTGGATTTGACCAGGACGGAATTAGAATGACGAGCGGAGGAGTCGTG	69	+	chr2R	5313210	5313279	5313210..5313279	CG8806-RB,	FBgn0033413,	prel,	1	.
CG4386-RA	CCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACTATGACAACGATATAGCCATCATCAAGTTGG	69	-	chr2R	17687672	17687741	17687672..17687741	CG4386-RA,	FBgn0034661,	CG4386,	1	.
CG9383-RA	GCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCAACTCACTGGCCATGGAATGTTGA	69	+	chr3L	19612866	19612935	19612866..19612935	CG9383-RA,CG9383-RB,	FBgn0029094,	asf1,	1	.
CG32667-RA	AGTCGAACTGCAAATGTGAAATGAACTATGAAAACTGAATATATAACTATAGAAACATACATACCTTAA	69	-	chrX	11033791	11033860	11033791..11033860				0	no match
CG8915-RA	TCCAGCTCCATAAAGTGCGAATGCTAACGGATCGTGAATTCGCCAAGTTGGTAGCGACGCGGAAGCTTA	69	-	chrX	17135975	17136044	17135975..17136044	CG8915-RA,	FBgn0030833,	CG8915,	1	.
CG5432-RA	CCCTCAGAAAGAAGGGCATCCTGACGGGAATAAAGGTAGACAAGCACTTTTCACCACTCTTCGGCTCCG	69	+	chr3R	22240142	22240211	22240142..22240211	CG5432-RA,CG5432-RB,	FBgn0039425,	CG5432,	1	.
CG6905-RA	CTCCCAGGTTATTCAGCGTAGTCTCCCGCGACCAACTGAAGTGAACACCAAGATTCTGCGACCGC	65	-	chr3L	359319	359384	359319..359384	CG6905-RA,CG6905-RB,	FBgn0035136,	CG6905,	1	.
CG4354-RA	AGCAAATCTCTAGTTCGTAAGTCGGAGAATCAAGCATCGCTTTACCTGCACAATCCCCAGAGGAAAGCC	69	-	chr2R	20219237	20219306	20219237..20219306	CG4354-RA,	FBgn0005638,	slbo,	1	.
CG30279-RA	TTGGGCTTGGTCGGTCTCAACTACCTGGATGTGTTCAAGTCCCAGCGACTAATTTCGGGGAAACGCATC	69	+	chr2R	18066913	18066982	18066913..18066982	CG30279-RA,	FBgn0050279,	CG30279,	1	.
CG9519-RA	TCGCGGCATCGAGCAGGCAGTAAGTTTACTGGATATGCCCGCATTTAAGGCAATCGGTGCACACTTATT	69	-	chrX	14748765	14748834	14748765..14748834	CG9519-RA,	FBgn0030589,	CG9519,	1	.
CG30354-RA	ACCACTGAGACATGCATGGAGGAATTGTTCGACTTCGTCGCTGAATTGGATCATTGCGTTGCTCACAGT	69	+	chr2R	4565010	4565079	4565010..4565079	CG30354-RA,	FBgn0050354,	CG30354,	1	.
CG1241-RA	TGTGTTCTTCCGCGAGGTGATCTTCAGTCCAGCACTACCCATTTGCTTTGACTATCATGGACGGCGGAT	69	+	chr3L	2779593	2779662	2779593..2779662	CG1241-RA,	FBgn0044452,	Atg2,	1	.
CG18066-RA	ATAAACGGGTAGCTTCCAGAAATATCAACAATTTCCGTTTATTTTGTGATCAGTTAAAGTGAGTGGGGG	69	-	chr2R	16436786	16436855	16436786..16436855	CG18066-RA,CG18066-RB,CG30150-RB,	FBgn0034517,FBgn0043536,	Cpr57A,Obp57d,	2	.
CG12333-RA	GACGTCTAAGGCATTAACGCTTTAGCCAACATGAATAAACATAATCAACCACCCGATTCATCGCT	65	-	chr3R	14226105	14226170	14226105..14226170	CG12333-RA,	FBgn0038617,	CG12333,	1	.
CG32604-RA	AGTGGCGCCAGAACAATTACAGTTCGACCTGGTGCAACGAACATTTTATCCACATCAAGGCGATGCGGA	69	+	chrX	14117978	14118110	14117978..14117994,14118057..14118110	CG32604-RA,CG32604-RB,	FBgn0026713,	l(1)G0007,l(1)G0007,	1	.
CG12279-RA	ATGGCCACCTACGAGGAAGTCAAGGACATTCCAAACCACCCGGAGAAGTACCTGTTCGATGTGCG	65	+	chr3R	8530882	8530947	8530882..8530947	CG12279-RA,	FBgn0038080,	CG12279,	1	.
CG8027-RA	GGCGGCAAACTTTGCAGTCCGACCCAAATATAACTTCCATGTCAGCCCAAAAAGAACTTCGCACAGCAA	69	-	chr2R	5092777	5092846	5092777..5092846	CG8027-RA,	FBgn0033392,	CG8027,	1	.
CG10622-RB	ACCGACAAAGTTACGAAAATAAATTAATACCAAGTTAGCCAAGGTATTCAGTTACCACCGCAGATCAGC	69	-	chr3L	5556647	5556716	5556647..5556716	CG10622-RA,	FBgn0029118,	Sucb,	1	.
CG13030-RA	CCGCAAAGGACTATTGACACTCCAACGGCATCCGGAGAAATGTTGACTCGTCGTCAATCGGCACC	65	+	chr3L	16852408	16852473	16852408..16852473	CG13030-RC,	FBgn0259794,	sinah,	1	.
CG12408-RA	CAGGTTGACCCACATTGCTCTTTTTTGACATGCTGTGCAAAAGCTCAGATATGGCAGACAATGCAAAAT	69	-	chr2R	1391087	1391156	1391087..1391156	CG12408-RA,CG12408-RB,	FBgn0033027,	TpnC4,	1	.
CG4439-RA	GGCAGCCGCACTATCGTTGCCTATTAATGTGTCCGCCGTATTACCCCTGTGTGAAAATATGCCATCGGG	69	+	chr2R	12379895	12379964	12379895..12379964	CG4439-RA,	FBgn0034132,	S-Lap8,	1	.
CG8902-RA	GCCACGCTGAGCTACCTTTTCAACCATCTGGCCTACTACAAGGTGTTCAAAAAGAAGGTGCTGGGACCT	69	-	chr2L	7065318	7065387	7065318..7065387	CG8902-RA,	FBgn0031886,	Nuf2,	1	.
CG7985-RA	TGGACTGAGCGTAATGCCTCTCGTTCAAACCTTTGGGCACATGGAATACGTCCTCAAACTCTCGGGC	67	+	chr3R	14038962	14039029	14038962..14039029	CG7985-RA,	FBgn0028499,	CG7985,	1	.
CG13850-RA	ACCAAGCAATCCGAGTGGTTGAGCTTTGTGTGGTCGCTAACAATGTTGGGTCTAGTAGAACACGGCCAC	69	-	chr3R	18235137	18235206	18235137..18235206	CG13850-RA,	FBgn0038961,	CG13850,	1	.
CG1883-RA	AACCAGCAGACCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTGACTGGTCGC	69	.	.	.	.	.	CG1883-RD,CG1883-RA,CG1883-RC,	FBgn0039757,	RpS7,	1	.
CG10648-RA	CGGAGAGAGCGCATATGCCGAGCAAATTGTGGGAGAGGATCAAGTTGTCCAGAAACTTCGAGAAGGCCA	69	+	chrX	8796167	8796236	8796167..8796236	CG10648-RA,	FBgn0030067,	Rbm13,	1	.
CG18271-RA	GGGCGTGCCTGAAGAACTGCAGGATCATGACGAGGATCTGAGCGACGACATTGATGTAGACAGCGATAT	69	+	chr3R	470049	470118	470049..470118	CG18271-RB,	FBgn0037263,	slx1,	1	.
CG5041-RA	ATTGGCTACGTCTGCTCGGTTTGCCTCTCGGTCTTCTGCAAATACAGTCCCATATGCACCACTTGCCAC	69	.	.	.	.	.	CG5041-RA,	FBgn0031309,	Tfb4,	1	.
CG6690-RA	GGTTGGATCCCATCTTTGCGGAACAACAATACGTCGGTTGCTTGGGTTCTACACCCCATACTCGACGGT	69	+	chr3R	17738696	17738765	17738696..17738765	CG6690-RA,	FBgn0038918,	CG6690,	1	.
CG18641-RA	TCGCGGATTTTATGCGGGTCCTTGTCCCAACTTGTTCTCCTATCTAATTGGTTGGTGTGAGCCCAAGGA	69	-	chr2L	2411090	2411159	2411090..2411159	CG18641-RC,	FBgn0031426,	CG18641,	1	.
CG13862-RA	CATTTACAATCACCAGGAAGTCGAGGTGGACAGCTCGTTCTTTGAGCCCACGCCGGATCGGATCG	65	+	chr3R	18158119	18158184	18158119..18158184	CG13862-RA,	FBgn0038942,	CG13862,	1	.
CG32653-RA	TGCCATTCCAGATTGCCATCTGTGATGATTACAGCCTGCCCGTAGACTTTGTTAAAAAACGACCGTCCA	69	-	chrX	12423597	12423666	12423597..12423666				0	no match
CG30190-RA	GGAGCACATAAATGAAGTGGTGGCTAACTATGGAAGGGATGAAAAGTTGTTGCCCCAAGAGCGGAAGCA	69	+	chr2R	18818120	18818189	18818120..18818189	CG42678-RH,CG42678-RI,CG42678-RJ,CG42678-RK,CG42678-RN,	FBgn0261564,	CG42678,	1	.
CG31868-RA	CAGCTAGTTAGCAGCGATCCTGTCCACATACGTATTTATGCTAACTAAATTGCATTTCACCTGCTAAAA	69	-	chr2L	11014137	11014206	11014137..11014206	CG31868-RA,	FBgn0032330,	Samuel,	1	.
CG30448-RA	AGCGAGACATCCCATGACGAGTCTTGTGAATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGA	69	+	chr2R	15755984	15756053	15755984..15756053	CG30448-RA,CG30448-RB,	FBgn0043532,	Obp56i,	1	.
CG6939-RA	TGGCAGGTTACCAGGACAAGTACTTCCACCCGCATCGTTTCGAGAAGCATCCATACACTACGCCC	65	-	chr3R	7616427	7616492	7616427..7616492	CG6939-RA,CG6939-RB,	FBgn0025802,	Sbf,	1	.
CG11199-RB	GGGGCAGGACGAAAAACAGACAACAAAGGCAACCTACAACAATAATAACGTAAAGACCAGGGGCAAAGT	69	+	chr2L	6730740	6730809	6730740..6730809	CG11199-RB,CG11199-RA,	FBgn0046704,	Liprin-alpha,	1	.
CG32846-RA	GGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGAATGAAGCGATCAAATCCTGAAGGCCTGTTGGA	69	-	chr3L	2951271	2951340	2951271..2951340	CG32846-RA,CG32846-RB,	FBgn0052846,	CG32846,	1	.
X06779.1_O3	ATATCGCGGGCTATGTCATTAAAAAATTGAGAATCAGTGACAAAGTAAAAGAAAATTTGACATTTACAT	69	.	.	.	.	.				0	no match
CG40042-RA	GGCTGGGCATCTCGTCCCTCTATTGCTTATACCTAATAGCACAGGAAAACAGTTCGAACTCAAGTCCCA	69	-	chr2LHet	168064	168133	168064..168133	CG40042-RA,CG40042-RD,	FBgn0058042,	CG40042,	1	.
CG12483-RA	AGAAGAAAGCCGACAGTACAGAGCTTTAATTAATTACCGCTGCTTTGTTAAAAAATGTCAAAATTTGTT	69	-	chr3L	97767	97836	97767..97836	CG12483-RA,	FBgn0040688,	CG12483,	1	.
CG10689-RA	CGGCGTGGGCATACAAGCATGAACTGGAGGACAATACCGTTCCGGAGATACAGCGTATTAATCTGGGCA	69	-	chr2L	19124959	19125028	19124959..19125028	CG10689-RA,	FBgn0086444,	l(2)37Cb,	1	.
CG7324-RA	TCCTGCACCAGAACCCATTGGCACTACCCGTCTATTTGTGGCTCTAGAAGAGGAGCTTCGTCAGG	65	-	chr3L	21331664	21331729	21331664..21331729	CG7324-RA,	FBgn0037074,	CG7324,	1	.
CG13560-RA	TCAAAGTCCTTGGACCCAACGCTACCTGGTCATCTCACGGCTTCTGCTGGATTCACTGCCTCTAG	65	+	chr2R	19636188	19636253	19636188..19636253				0	no match
CG13541-RA	TTCACGTGAACTGCTGCAAGTACAAGATCCGTTCGAGACCCATGAGGCGCAATCAGTGCAACCTG	65	+	chr2R	19171965	19172030	19171965..19172030	CG13541-RA,	FBgn0034841,	CG13541,	1	.
CG7462-RB	CAACAGCCCATCTGCATCCTGAACATCGTTCTTCCGGAAGCTGTAATTCCCGATTCCACGACCGC	65	-	chr3L	7692989	7693054	7692989..7693054	CG42734-RJ,CG42734-RS,CG42734-RR,CG42734-RF,CG42734-RL,CG42734-RG,CG42734-RM,CG42734-RK,CG42734-RQ,CG42734-RT,CG42734-RP,CG42734-RU,	FBgn0261788,	Ank2,	1	.
CG9369-RA	ACTGACGCACACATACAAAACCGACTACCATTTTCCATTGATAGTATGAACAAAAGCAAATGCAACTCC	69	+	chrX	11663385	11663454	11663385..11663454	CG9369-RA,	FBgn0002577,	m,	1	.
CG11994-RA	TGCTCACCTCAACGGTTCCTTGGGCATCAAAAGCCTATGTGATCTTGGCGAGCGATTGTATGGAACCTC	69	+	chr3R	4891001	4891070	4891001..4891070	CG11994-RA,	FBgn0037661,	Ada,	1	.
CG14314-RA	AGTCTCAAATGGGAACAGAACGTCATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGC	65	+	chr3R	14042323	14042388	14042323..14042388	CG14314-RA,	FBgn0038581,	CG14314,	1	.
CR33327-RA	AGCTATTTATATGTCTACACCTTCGACCGACATCCAGAGAACCCCAACACACACCTCTCACACCCATTT	69	+	chr3R	9640265	9640334	9640265..9640334	CG42387-RA,CG42386-RA,CG42385-RA,CG42384-RB,	FBgn0259733,FBgn0259732,FBgn0259731,FBgn0259730,	tal-AA,tal-3A,tal-2A,tal-1A,	4	.
CG13419-RA	TCGCTGTGCCAGTTATATCCAGGTTTCGGGCAGTAAGATCTGGCAAATGGAGCGTTCCTGCATGT	65	+	chr3R	17595569	17595692	17595569..17595591,17595649..17595692	CG13419-RA,	FBgn0038901,	burs,	1	.
CG4709-RA	TCCGCCGAAAGCAAAGAGATATGGCCAAGGTTAAACAGTCCCTGGACCGGAATTCTGGAGATGCG	65	+	chr2L	9955979	9956044	9955979..9956044	CG4709-RA,	FBgn0032169,	CG4709,	1	.
CG10138-RA	TCTCGTCGTTCGACCGTTTTATCAACTGGTAAGGAGAGCTCCAAGGAGGAAAAGAATCGAATGTCCCAA	69	-	chr2R	17930286	17930355	17930286..17930355	CG10138-RA,	FBgn0005778,	PpD5,	1	.
CG14460-RA	CACACGAGCCTCGCATTTTCTCATCACCCAGCATCATGAGCACGACGACAACGACAACGACAACG	65	+	chr3L	22417022	22417087	22417022..22417087				0	no match
CG4486-RA	CCAAGGACCATCAAGGATCTGTGGGGATCAGCGAGTGGATTCAATTTTACGCCTAGGTCCGGATTCTGG	69	-	chr2R	3017904	3017973	3017904..3017973	CG4486-RA,	FBgn0015039,	Cyp9b2,	1	.
CG3825-RA	TCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCTATCTACGAGCAATATCGGTTCGGGC	66	-	chr2R	19864305	19864371	19864305..19864371	CG3825-RA,	FBgn0034948,	Gadd34,	1	.
CG5500-RA	GGCGTGTGAAATGCTCATCACTTCCTCTGGGCCTTTTCAATCGTAACTTTCGAACTCTTTCGGGGATCG	69	+	chr3R	22705239	22705308	22705239..22705308	CG5500-RA,	FBgn0039461,	CG5500,	1	.
CG1057-RA	GCGAAATACCTCATGTACCCAATGTGCCTCTACTTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGG	69	+	chr3R	468555	468624	468555..468624	CG1057-RA,CG1057-RB,CG1057-RC,	FBgn0037262,	MED31,	1	.
CG5413-RB	TGGCAGAAGGACAACAAGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGG	65	-	chr3R	13219598	13219663	13219598..13219663	CG5413-RC,CG5413-RA,CG5413-RB,CG5413-RD,	FBgn0025456,	CREG,	1	.
CG13439-RA	AGATACAGATACAGCAGCACAATGTCCCTGCCATCCAGAGCCAATATCGGATTACTCAACTGGCT	65	+	chr2R	16586669	16586734	16586669..16586734	CG13439-RA,	FBgn0040726,	dpr,	1	.
CG9075-RB_00718-00956	TGAGGCCGATGAGATGTTGTCCCGCGGTTTCAAGGATCAGATCCAGGATGTCTTCAAGATGCTGCCCCC	69	+	chr2L	5984317	5984386	5984317..5984386	CG9075-RA,CG9075-RC,CG9075-RB,CG9075-RD,CG9075-RE,	FBgn0001942,	eIF-4a,	1	.
CG31936-RA	TGCGTATGGCTTTGTCCTGAATGCCGCATTCATTCTGCTGGTCGTTACCAATGACACGGAGAGCGAAAC	69	+	chr2L	1784207	1784276	1784207..1784276	CG31936-RA,	FBgn0045497,	Gr22e,	1	.
CG9203-RA	GGGAGTCCTACGATGATGACGTAATGGTCAGGGATGTTCATACGCCCATCGTCAACTTGGTCGAAAGCT	69	-	chrX	15367666	15367735	15367666..15367735	CG9203-RA,	FBgn0030646,	CG9203,	1	.
CG8432-RA	TCACTAGCCAACTCTTCGATCAATCAGACGCACAAATAATATTTAGCTCATACTTCACAATTGCTGCCC	69	+	chr2R	15381039	15381108	15381039..15381108	CG8432-RA,	FBgn0026378,	Rep,	1	.
CG5139-RA	GCACCCAATCCTGCCAAGAAAAGGAGGGTGGTCAAGAAGAGCAAGATCAATATCTTGAAACAGAGGAGT	69	-	chr2L	1198892	1198961	1198892..1198961	CG5139-RA,	FBgn0031323,	CG5139,	1	.
CG6647-RB	GAACGTCAAGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCG	65	-	chr2L	10848364	10848429	10848364..10848429	CG6647-RA,CG6647-RB,CG6647-RC,CG6647-RD,	FBgn0004363,	porin,	1	.
CG4799-RA	TGGAGGTTTACCAAGGCTGGGACTCCTTCTACAGCACAACAAAAGCAACATTGTGAAGGAGGCTGC	66	+	chr2L	10058866	10058932	10058866..10058932	CG4799-RA,	FBgn0011823,	Pen,	1	.
CG14025-RA	GAGCTCAACGATTTGCATAGCCGAATCGAGACCCAGGGTGTTTTACTGGCCGATCAGACACAGCG	65	-	chr2L	5272840	5272905	5272840..5272905	CG14025-RA,CG14025-RB,CG14025-RC,CG14025-RE,	FBgn0000228,	Bsg25D,	1	.
CG10698-RA	GCGTAGGATTAGAGCTAGTCCGTACGAAGTGGTTGCCCTACACTGGGAGAAACTCGTGGTCACTTTGCA	69	-	chr3L	12332735	12332804	12332735..12332804	CG10698-RA,	FBgn0036278,	GRHRII,	1	.
CG5115-RB	ATCGGGACCGAACGAGATGGAGGTGTCAGTATATTGCCCGTGGCACGCTGTGAATTCGCAACTAG	65	+	chr3R	16309950	16310015	16309950..16310015	,CG43224-RF,CG43224-RG,CG43224-RH,CG43224-RJ,CG43224-RK	,FBgn0262869	,mun	1	.
CG30384-RA	GCCGTGGATCCAGCAGCTGCGTAGGAAAAACCCATATCAGTATCTCTTGAAAAAACTGCGATCGCGGAA	69	+	chr2R	3072523	3072592	3072523..3072592	CG30384-RA,	FBgn0050384,	CG30384,	1	.
CG1916-RA	GCTGGGCTCGAATTCGTGTTGTGTGCCTCGGATTTGCATCGTCATGTGGAAAATACATAACAAGCTCTT	69	+	chr2R	5382659	5382728	5382659..5382728	CG1916-RA,	FBgn0004360,	Wnt2,	1	.
CG9186-RB	ACCTGGCCCAGACAATCAGCCCTGTCCATTACCTAATCCATCCATGCCAATAGACTTGGGAATCCGGAT	69	-	chr3L	1311848	1311917	1311848..1311917	CG9186-RB,CG9186-RA,	FBgn0035206,	CG9186,	1	.
CG12772-RA	TGGTCCATGTGCGATTTCGTTGACGTGCAAAATACCAGCATGAATCGCTCCATCAAGGAGGTGATCGCA	69	+	chrX	8573923	8573992	8573923..8573992	CG12772-RA,	FBgn0030055,	CG12772,	1	.
CG5475-RA	GCGCATTCGTGTGTCGCTTCTGATCGATCTGATCCACTGACGATCTGATTCATGAATGCCTAACACGCA	69	-	chr3R	19977650	19977719	19977650..19977719	CG5475-RB,	FBgn0015765,	Mpk2,	1	.
CG12660-RA	TGCAAGTCTAACTCTTGGTTGGCCAAACAAATCTACAATAAAATTATATTTCGTGTGTGTGACAAAAAA	69	+	chrX	8806457	8806526	8806457..8806526	CG34344-RB,	FBgn0261549,	rdgA,	1	.
CG8727-RA	GGCGTCGGGACAAGATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTGCGATG	68	-	chr3L	19808267	19808335	19808267..19808335	CG8727-RA,	FBgn0023094,	cyc,	1	.
CG11146-RA	TCTGCGTGGTCTCAATAGCAACAAGGAGCTAAACATGAATCTCAGCCAGGGATATGTCACTGCTGTGGA	69	-	chrX	12413471	12413540	12413471..12413540	CG42251-RC,CG42251-RD,	FBgn0259109,	CG42251,	1	.
CG5904-RA	CGGTCACAGAGGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCAGTGTCAATTTGTACGGCGG	65	+	chr3L	15999143	15999208	15999143..15999208	CG5904-RA,	FBgn0036557,	mRpS31,	1	.
CG8815-RA	CATGGCCAGATTCTTCATTCACATGACGACAATGAGAAGATGTGGGATGAATTGCCTGCATTGAAATAA	69	-	chr2R	8463373	8463442	8463373..8463442	CG8815-RC,CG8815-RA,CG8815-RB,CG8815-RE,CG8815-RF,CG8815-RG,	FBgn0022764,	Sin3A,	1	.
CG8583-RA	GGACGGATGGATAGACGTCCTGAACCCCAATCAACCTCAACCTCCTCTCTAATTCACTGGGACGGAAGA	69	+	chr3L	7357166	7357235	7357166..7357235	CG8583-RA,	FBgn0035771,	sec63,	1	.
CG32921-RB	AGTGCTCGTGCTTATCTTTCTCACGTACTTCTCGCTACAAGTCACACACATGGGTCTCTTCCGGCCGAA	69	+	chr3R	15872927	15872996	15872927..15872996	CG33933-RA,CG33934-RC,CG33934-RD,CG33934-RE,	FBgn0260466,FBgn0064119,	Indy-2,CG33934,	2	.
CG12521-RA	CGGCGACACTTATTTCCGTCCGTGAGTGAAATAGTTATTTAATAAATTTCGAAACAAATGTGCTTAAAA	69	-	chr3L	11840437	11840506	11840437..11840506	CG12521-RA,	FBgn0040816,	CG12521,	1	.
CG9247-RA	TGCGCCTTCAAATGCCTCACCACTACTTGGACCTTCGCAATCTCTGGTTGGAGTTAAAAAAGCAGCGCT	69	-	chr2L	21161350	21161419	21161350..21161419	CG9247-RA,	FBgn0032924,	CG9247,	1	.
CG13721-RA	ACGGCGGATATTGGCCACATTACAGCGGCAGTTACTACGGAATTGGTTATCCATACTATGGAGGTTACT	69	-	chr3L	4497251	4497450	4497251..4497275,4497405..4497450	CG13721-RA,	FBgn0035554,	CG13721,	1	.
CG18108-RA	GGCAAGTAGGAAGTTTCAACCCAAGGATTCGAAAAAGGACATAGTCTACAAACTAGAACACAAAAGCTG	69	+	chr2R	14271725	14271794	14271725..14271794	CG18108-RA,	FBgn0034329,	IM1,	1	.
CG8044-RB	AATCGCACTTGGAGTCATTCGAAGTACACAGAGTACATGTCCAAGATAAACCAAATAGATGTGCGGGGC	69	-	chr3L	7968632	7968701	7968632..7968701	CG8044-RA,CG8044-RB,	FBgn0035829,	HP4,	1	.
CG5288-RB	CGAATGCTCTCATCCTGATGTAGAGCGCCTGATTGCCATATCGAACCAGCAGAACGTTAGCGCCC	65	-	chr3L	8976647	8976712	8976647..8976712	CG5288-RC,CG5288-RA,CG5288-RB,CG5288-RD,	FBgn0263199,	Galk,	1	.
CG4911-RA	CATTGAGTTGGTGCTGACCCTTGTGTATGCCTATGAGGCCATCGCACTACTGCAGCATCGTGTGC	65	-	chr3L	9064163	9064228	9064163..9064228	CG4911-RA,	FBgn0035959,	CG4911,	1	.
CG7866-RA	TGGAAAAGTCGTCTCACCATCCCTGTCATAGTCACAACTGCATTTCTCGTCATGGACATCCGCCTGC	67	+	chr3R	25759712	25759779	25759712..25759779	CG42557-RA,CG42558-RA,	FBgn0260759,FBgn0260760,	CG42557,CG42558,	2	.
CG13685-RA	AAAGCCTCCAGAAGATACCCTCGCCCATAGAGTTCCTCACCTGCTTTCTGGTGAAGAAGTCGCGC	65	+	chr3L	7741353	7741418	7741353..7741418	CG13685-RA,	FBgn0035816,	CG13685,	1	.
CG9241-RA	TGCGGAAATCGAACTACTACCGTATTCAAGTTGCCCAAACAGAGCTGTAAGAATTGCAAGGGGTCGCGA	69	+	chr2L	21182211	21182280	21182211..21182280	CG9241-RA,	FBgn0032929,	Mcm10,	1	.
CG40096-RA	GCGTTGTCAGCAAACTCTATCTTGCGCGTGTTTACTCCTCCCCTACTAGTTTGAAACGCGTCTTCGGGT	69	+	chrU	171327	171396	171327..171396				0	no match
CG4407-RA	CTGTCGCCGTAACTCATCAGTTAAATGTGCGCCAGTAAACAGTCGATGCAGCAACGAAACACATGAGCT	69	-	chrX	12797366	12797435	12797366..12797435	CG4407-RA,	FBgn0030431,	CG4407,	1	.
CG7434-RA	GTGGTTTTCGACTGACAAGATGGCTCCTACCGCCAAGACCAACAAGGGTGATACCAAGACCGCTG	65	-	chrX	658921	659147	658921..658955,659116..659147	CG7434-RA,	FBgn0015288,	RpL22,	1	.
CG3257-RA	TCGACGCGTTTCAAAAACAGTTTGGAGGAGTCTCTGGTAGGCGAGAGTTCCCGTAAACCCGTAAACCCA	69	+	chr2R	20010101	20010170	20010101..20010170	CG3257-RA,CG3257-RB,CG3257-RC,	FBgn0034978,	CG3257,	1	.
CG12593-RA	TTGAAAAAAATCGAAAAAAATGGGTTGAAAACATTTTGATGCAAATATTAGATGGCAAGTGTCCTGGAT	69	.	.	.	.	.				0	no match
CG4297-RB	AGCATCCGAATCTCCCGATAGATGTGGTTCTGCTCCTACTCCCCGAGAACTAAGTGTCGAGGAGGC	66	-	chr2L	461013	461079	461013..461079	CG4297-RA,CG4297-RB,	FBgn0031258,	CG4297,	1	.
CG16738-RA	GCTTGCCCCGTGGAAAAACCCGTGACGTCTAAATGCTGCATTTAGCAAATTCCTTTGGTCATCATCGCA	69	+	chr2L	3826861	3826930	3826861..3826930	CG16738-RA,	FBgn0003430,	slp1,	1	.
CG30288-RA	TGGGCGAATACGATACCCGACATCCCATATTCGACTGCGATGATTTTGTCTGCACACCAAGGGCCTACA	69	-	chr2R	17407406	17407475	17407406..17407475	CG30288-RC,	FBgn0050288,	CG30288,	1	.
CG5917-RA	CAAACGGACATGGAGCGACTCAAGCAGGGATTAGTCAGCGTCCAAGTGTGGTCAGCATATGTGCC	65	.	.	.	.	.	CG34420-RC,	FBgn0085449,	CG34420,	1	.
CG12584-RA	CCCAATCGGACACTTCAGAAACCAGTCCCCAATTTGATTTTGTGGTGCTGGACATCGTTAGGGACGCCC	69	-	chr3R	328413	328482	328413..328482	CG34357-RA,CG34357-RC,	FBgn0085386,	CG34357,	1	.
CG1655-RA	ATCATTTCGGCAACTGATCTGTGTTCTATATCTATTACCTGTACTGAAGTATTTGGCTCGCAATTGCAG	69	-	chrX	10749380	10749449	10749380..10749449	CG1655-RA,	FBgn0030242,	sofe,	1	.
CG18214-RB	GCCAGTTGGGCCAATGTACAGTGTAGCATACGAGGATAAGTCAGAGTCACTCAAATGCATGTGTCTCTT	69	-	chr3L	996924	996993	996924..996993	CG18214-RA,CG18214-RC,CG18214-RD,CG18214-RB,CG18214-RE,	FBgn0024277,	trio,	1	.
CG13778-RB	GATCTCACCCTGCTCTCCATTGTCGTTGGATACATCGAGCTGTCTTTGACGACGGGAGAGGCTGC	65	+	chr2L	7057544	7057609	7057544..7057609	CG13778-RC,CG13778-RB,CG13778-RA,	FBgn0031885,	Mnn1,	1	.
CG13240-RA	TGTTGGCGTTTTCCAACGTCCACATCGCAAAGTTCGAAAACAAACGGTCCAAAATGGTAGCTGGT	65	-	chr2L	15750964	15751029	15750964..15751029	CG13240-RA,CG13240-RB,	FBgn0001989,	l(2)35Di,l(2)35Di,	1	.
CR32489-RA	AGTGGGGTCAATCCAGTTTGTAAAGAGTGTTAGGATCGAGGGGTTATTTGTATGAATGTCCAGGCAGGT	69	+	chr3L	7997286	7997355	7997286..7997355				0	no match
CG11263-RA	GCCCAGTTTTTACGGACGACATCACCCCACGTCTATTTTGGTGGTAGCCACGTGCAATGGAACGTACAT	69	+	chr3L	13000208	13000277	13000208..13000277	CG11263-RA,CG11263-RB,	FBgn0036330,	CG11263,	1	.
CG1662-RA	GGCGCAGTTCGTCAACTTCTACTGGATCCCCACCCATTACCGCATCTTCTACGACAACATCATCAGCCT	69	+	chrX	13282643	13282712	13282643..13282712	CG1662-RA,	FBgn0030481,	CG1662,	1	.
CG8177-RK	CGGCTGGTACATCGGTTTCGATACCTCTTCCACGTGGATACCATTTGCTTGTGTGATACCTGCCCTGCT	69	+	chr3L	9777448	9777517	9777448..9777517	CG8177-RI,CG8177-RJ,CG8177-RK,CG8177-RC,CG8177-RF,CG8177-RG,CG8177-RB,CG8177-RA,CG8177-RD,CG8177-RE,CG8177-RH,	FBgn0036043,	CG8177,	1	.
CG1873-RA	GCCGTGGTGGTCTACTGCAGCTATCTGAACATGTATCGTCACCGCAAGTCCTTTCGTAGGAAACCACCC	69	+	chr3R	27568327	27568396	27568327..27568396	CG1873-RA,CG1873-RB,CG1873-RC,CG1873-RD,	FBgn0000557,	Ef1alpha100E,	1	.
CG5514-RA	GCCACACCAGTCCCAATCTCGAATGAGCAAAGCGACGAATTTAGTGCCGACTTTGTGACCCACTTCGAA	69	+	chr3R	23767443	23767512	23767443..23767512	CG5514-RA,CG5514-RB,CG5514-RC,	FBgn0039560,	CG5514,	1	.
CG12061-RB	ATGCCTTGGTCTACCCTGGCTTCTGAAAATTCTTATTTACCAGCAAAAGATCGATATCGACTCCACAGC	69	+	chrXHet	26171	26240	26171..26240	CG12061-RC,CG12061-RA,CG12061-RB,	FBgn0040031,	CG12061,	1	.
CG1211-RA	GCCCAAGGCATTCGAGACGGGTTTTAAATCACTGCTTGGATGGTTTCCGGGAAAAATCAAGGAGAGGGT	69	+	chr3L	1233582	1233651	1233582..1233651	CG33965-RA,	FBgn0053965,	CG33965,	1	.
CR32009-RA	AATGAGGAGTTGCCACCTGCCGTTAAATGGCTCTTTGACTTACTTGATGAAGCTGCGCGACGCCATGAT	69	.	.	.	.	.	CR32010-RA,CR32009-RA,CG17245-RA,CG17245-RB,	FBgn0052010,FBgn0052009,FBgn0025740,	CR32010,CR32009,plexB,	3	.
CG9463-RA	TGGATCAGACTGAGGGCAATGTGGTCAGTTTCAGTATTCGGCAAATTTTCGATGATCTTGGTGGACTGG	69	-	chr2L	8765632	8765701	8765632..8765701	CG9463-RA,	FBgn0032066,	CG9463,	1	.
CG3947-RA	ACAGGTGTGGACGCATTCGGAGTGTTGAGGGTGGGTTGAGTTTTGGTCCTTGAAAAGTTGTTTGCACAA	69	-	chr3L	20770051	20770120	20770051..20770120	CG3947-RA,	FBgn0037019,	pex16,	1	.
CG13062-RA	ACCACCCCTACGATCCCTTCCATCTGCATCACCATCACGACTTCCACGACTACCATCTGCACTAA	65	+	chr3L	16307982	16308047	16307982..16308047	CG13062-RB,	FBgn0036603,	CG13062,	1	.
CG9170-RA	CGCTGGAGGATCAGTTTCCCGAGAATACCCTGGATGCACCTTATCATCTGCGATACCCCTTCACCGAC	68	-	chrX	15873313	15873381	15873313..15873381	CG9170-RB,CG9170-RA,	FBgn0030716,	CG9170,	1	.
CG13737-RB	TTGGGGTTTTGACGGTGGGTTTACTTTCACTTTTGCCGCACTTACTCAACAAGTTGTGGGGGCCC	65	+	chr3L	13875147	13875212	13875147..13875212	CG13737-RB,	FBgn0036382,	CG13737,	1	.
CG5252-RA	TGGTGTTGCCACTCAGGACAACCGTTTGACCACAATAACATTCAAAGAACTGGTGGACGACCCCA	65	+	chr3R	7241304	7241369	7241304..7241369	CG5252-RA,	FBgn0037894,	Ranbp9,	1	.
CG4867-RA	ATCCGGCCCTGATGGAAACGCACGTGATGTTCATAGTCCTCTACCTGGTCGGATTCTTCCTGGAG	65	+	chr3L	5558776	5558841	5558776..5558841	CG4867-RA,	FBgn0040239,	bc10,	1	.
CG7135-RA	TCCCGCTGATGAGCATGATCGGTGTGGACTCCGAGGACAACTCACTGAAGAACTTTCACGACGAGAC	67	+	chrX	17999017	17999084	17999017..17999084	CG7135-RA,	FBgn0030895,	CG7135,	1	.
CG6498-RA	TCTCCCACTGGAGTCGTTCCGCAGCTGTATCAGCGTCCATCCACTCTACATGGTCTCAAGCACAA	65	+	chr3L	15567637	15567702	15567637..15567702	CG6498-RA,	FBgn0036511,	CG6498,	1	.
CG13739-RA	CCGGCGATCCGACACCATTGACGTCCATCCGTCTACCAATTTTCAGATGAAGAAAACGCATTCCTTCCA	69	-	chr2R	5206498	5206567	5206498..5206567	CG13739-RA,	FBgn0033403,	CG13739,	1	.
CG30182-RA	ACAATGCTGAAGTTGGTCGAAAAGCTTTTCCAACTGTTGCGACCCAGGATGTGTCAGTTTTCACAATCC	69	-	chr2R	19487407	19487476	19487407..19487476	CG42559-RA,CG42559-RB,CG42559-RC,CG42560-RA,CG42560-RB,	FBgn0260761,FBgn0260762,	CG42559,CG42560,	2	.
CG5555-RA	ATCTGCTGAACTTTATTGCCCCCTGTCATGCAGAGATTAAACACATCCAGATTGTACGTGACGGCAGCC	69	-	chr3R	15005224	15005293	15005224..15005293	CG5555-RA,	FBgn0038686,	CG5555,	1	.
CG7053-RA	CCTCCATGGGTAACGCCATGAAGAAGATCATCAAGGAAACGCTCGCAATGTGACGGGCTGTCGGG	65	+	chrX	18686534	18686599	18686534..18686599	CG7053-RA,	FBgn0030960,	CG7053,	1	.
CG12755-RB	TACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACCTCCAATTCGCAAACTCCGAG	65	-	chr3L	6118675	6118740	6118675..6118740	CG12755-RB,CG12755-RC,	FBgn0002440,	l(3)mbn,l(3)mbn,	1	.
CG32005-RA	ACCTTCAACCCCATCGACTGGTAGTAATAGTGGATGCTCTACTGGAATGGTTTCTGGAATTTTCGGGCT	69	+	chr4	113485	113554	113485..113554	CG34403-RJ,	FBgn0085432,	pan,	1	.
CG40113-RB	TGTTGCGAACACCACAGCCTCTTGGTTGGTTTGGCCTTTTATCCAAGGGCGTCGGATTCAACGTCTTAT	69	.	.	.	.	.	,CR41243-RB	,FBgn0085570	,CR41243	1	.
CG3269-RA	AGGTAGTTGAAGGAACAGATTTCTTGTTTTCTATCTCAACCGTAACTAACCACGTAAACATAGCTACCA	69	+	chr2R	2586132	2586201	2586132..2586201	CG3269-RA,	FBgn0014009,	Rab2,	1	.
CG5387-RA	ACAACAAGAACTCCATGTCGAACCACAACAAGCTGATCCAGAAACAGCCCCTGACGCTCAGCCTG	65	-	chr2L	10309443	10309508	10309443..10309508	CG5387-RA,	FBgn0027491,	Cdk5alpha,	1	.
CG11298-RA	GAGGATCCTGTGCGGAGTGATCCCCCCAGTGGACTGCATCGCAAGTATCGCCCATTTCCGACCCGCCCC	69	+	chr2R	18235908	18235977	18235908..18235977	CG11298-RA,	FBgn0034721,	CG11298,	1	.
CG8078-RA	GGCATCACTGGATATCGGGATGACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGATGCCA	69	-	chr2R	4985508	4985577	4985508..4985577	CG8078-RA,	FBgn0033375,	CG8078,	1	.
CG7368-RA	GCAGACGGGACCAGCCATTGGGATCAACACCCTGGGCACGACAACCATTAGTATACCTCAGCAGG	65	+	chr3L	11596671	11596736	11596671..11596736	CG7368-RC,CG7368-RB,	FBgn0036179,	CG7368,	1	.
CG13829-RA	ACTGCTGCTCTTTCTGACCGTCTTCCTTCTGTTTCCCGTGGTGATCTTCGTCATCTTCAAGTTCTTGAT	69	-	chr3R	18986770	18986839	18986770..18986839	CG13829-RA,	FBgn0039059,	CG13829,	1	.
CG3279-RA	TTTAGCTAGCAAACCAATAGCCAATGATCTTAGCCCAAATTCAAATGTTATAGAAGCCTGTCCATTCCA	69	-	chr3L	691948	692017	691948..692017	CG3279-RA,	FBgn0260862,	Vti1,	1	.
CG12625-RA	ATTGGGCATTAAAAAGTCCAGCACGCAACGCAGCATCGAGATTATTGTGGACGCCAGTCAGTGCG	65	-	chrX	11140995	11141060	11140995..11141060	CG42683-RA,CG42683-RB,CG42683-RC,	FBgn0261569,	CG42683,	1	.
CG18627-RA	AGCCAGTGCGTAGCCAATGTGTAGTGCAGCAGACCTCTGACGTATTCCCACGCTAGCGTTTCTTAGTTT	69	+	chr2L	2880494	2880563	2880494..2880563	CG18627-RA,	FBgn0028970,	betaggt-II,	1	.
CG12655-RA	GGATACGCCGGCATCGATTCGCGTGGTACCTACGGTGGAGCGGGTGGCAATGGAGCCTACTACGT	65	-	chrX	19852737	19852802	19852737..19852802	CG12655-RA,	FBgn0031080,	CG12655,	1	.
CG14068-RA	CAGAGCAGATTACGCATTGCCAATGCTCAGCTGCTGGACACCGGAAACTATACGTGCATGCCGAC	65	.	.	.	.	.	CG33507-RD,CG33507-RE,	FBgn0261871,	dpr2,	1	.
CG13671-RA	ACGGCAGTTTTACGCCAGAACATTGCCAAGGACTCACAAAAATGCTCTTGCCATGATGGAATCTGGGTT	69	+	chr3L	8294699	8294768	8294699..8294768	CG13671-RA,	FBgn0035867,	CG13671,	1	.
CG8486-RA	TGAGCCCAAAACACTACGACTACCGACCGTTGGTTATCAAAATGCATCGGGACAACGAGACCAATGGGT	69	+	chr2L	8188455	8188524	8188455..8188524	CG8486-RE,CG8486-RF,CG8486-RG,CG8486-RH,CG8486-RI,CG8486-RJ,	FBgn0031993,	CG8486,	1	.
CG6788-RA	AACCGCATACCTCATCCTGATTCTTTCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGA	65	+	chrX	17782238	17782303	17782238..17782303	CG6788-RA,	FBgn0030880,	CG6788,	1	.
CG1004-RA	GCTCGCAGGGATTCGGAATCTGCTTGAGCTTCAGGAGAGATCGAGAGACAGAGAGTTGGTGGAAAAGAA	69	+	chr3L	1467378	1467447	1467378..1467447	CG1004-RA,	FBgn0004635,	rho,	1	.
CG10095-RA	TATTAACAGAGAGAGAATAAGGAAGATACACCCTCGGCAAGGCAATATATACAGGACTAAGGGCATAAG	69	-	chr3R	7965388	7965457	7965388..7965457	CG10095-RA,	FBgn0037993,	dpr15,	1	.
CG5336-RA	AACCTGGCCTTTTCCATCACCTTCGAAAACATGGAGCACTCTACGTTGGACTTTGTGGCACCCGAC	66	+	chr2L	12100268	12100334	12100268..12100334	CG5336-RA,	FBgn0032409,	Ced-12,	1	.
CG11137-RA	CCGATTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGAGGAATTTCGTTTGTCT	69	-	chr3L	22860641	22860710	22860641..22860710	CG11137-RA,	FBgn0037199,	CG11137,	1	.
CG31860-RA	GGGCAATGTTTGAGCCCTTCGGATAAAAGTGGAAAACGGAAATCCTCGGATCCGGAAAAGGGCGAAGGA	69	+	chr2L	12166499	12166568	12166499..12166568	CG31860-RB,CG31860-RC,	FBgn0051860,	CG31860,	1	.
CG9337-RA	AGGAACATTTTATGCCCCCAGTCATCTACATACCTAGGAGCTATGAGTACAGCAAACCCGCCCATCAAG	69	-	chr2L	20862927	20863050	20862927..20862939,20862993..20863050	CR9337-RA,	FBgn0032898,	CR9337,	1	.
CG12455-RB	GGTGGAAAGGGGCATCTTTCTCAGCATAGAGGTCTACGATTACCAGGAGCAATGCAAGGAGGAGCCAAA	69	+	chr2L	16238870	16238939	16238870..16238939	CG42817-RA,	FBgn0261999,	CG42817,	1	.
CG5147-RA	ACCCAAGGGCAGTGTACTACGGCAGCTGGAAGAAGGGCAGATCGGCAAGATTCTGAGGTACAAATC	66	-	chr3L	18101293	18101359	18101293..18101359	CG5147-RA,	FBgn0036775,	CG5147,	1	.
CG5730-RC	CGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCAGAACAAGTACGGCAAGAGCTTGGAGTCCTG	67	+	chr3R	16894667	16894734	16894667..16894734	CG5730-RD,CG5730-RA,CG5730-RB,CG5730-RC,	FBgn0000083,	AnnIX,	1	.
CG6662-RA	AGGATCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCCAAATACATGAACTCCCGGCGAT	69	-	chr3L	8517080	8517149	8517080..8517149	CG6662-RA,	FBgn0035907,	CG6662,	1	.
CG6654-RA	TCGCGGTGGAGAAATCGTTGATGATCCACAGACGCCAAAAGGGCTGCATTAATCGCAACTACAAGTGCA	69	-	chr3R	11038161	11038230	11038161..11038230	CG6654-RA,	FBgn0038301,	CG6654,	1	.
CG18193-RA	CCCACAAAACACAAATACTCTGTACACGAATGCAAATACCAATTGTAACGACACATACATTAGTTAACT	69	+	chr3R	4169895	4169964	4169895..4169964	CG18193-RA,	FBgn0037579,	CG18193,	1	.
CG16728-RA	TGGCGCGGACATAAGCGAGCAACTGAAGATTGCACGTGGAAAGTTGCAACTCGTGCCAAATAAGATGTT	69	-	chr2R	6531366	6531435	6531366..6531435	CG16728-RA,	FBgn0033539,	Git,	1	.
CG12717-RA	CGGATCCGGACAAAGGAAGTGCCAGGATGTTGATTATCTACAGCAGTGGAAAGCAGCACATCGTCACCT	69	-	chrX	12657204	12657273	12657204..12657273	CG12717-RA,	FBgn0030420,	CG12717,	1	.
CG32568-RA	CAATCCGATGCTTAGATGCCTGACTACTGTATGCATGAGCACCGATCATAGACCGATGAAACACGACGC	69	+	chrX	16636118	16636187	16636118..16636187	CG32568-RB,	FBgn0052568,	CG32568,	1	.
CG5163-RA	GAATTAAGGCAGCCACTATGTCGTATCAACTGTACCGCAACACCACGCTCGGCAACACCCTGCAG	65	-	chr3R	19716629	19716694	19716629..19716694	CG5163-RA,	FBgn0013347,	TfIIA-S,	1	.
CG9970-RA	TGTTTAGCCTGCGCGAGTCTTTCAACCATCCGGAGAAGTTTGACCTCTTTAGCAAGGAACCCGGGATGT	69	-	chr3L	2915489	2915558	2915489..2915558	CG9970-RA,	FBgn0035380,	CG9970,	1	.
CG12372-RA	ACTGCCGCAGTCTACCTTACGTGACATGAAGAATCGTGGAATTGTCTACAAATCTCGGGACAGAAGTCA	69	+	chr2R	8521583	8521652	8521583..8521652	CG12372-RA,	FBgn0028683,	spt4,	1	.
CG4451-RA	AGCGTCGCATCGAGAAGCTAAACAGTCTGGACATTGAGCTGTATGCCTTTGCCAAGACTTTGCTCTTTC	69	-	chr3R	15762979	15763048	15762979..15763048	CG4451-RA,	FBgn0038755,	Hs6st,	1	.
CG8135-RA	CGCATTATGGAGACGGTGTACACGCAGATCATGGGCCACATGGATGTTATTGGCATCATCTCGAACGGC	69	+	chr3R	5232843	5232912	5232843..5232912	CG8135-RA,CG42511-RA,	FBgn0037689,FBgn0260237,	CG8135,CG42511,	2	.
CR30087-RA	ACTGCCAGGGATCGAATTGCTCTCCCCGTTCTGAGGAGTATGGCATCATGAAGGCAATAACCCATCGAT	69	+	chr2R	11580381	11580450	11580381..11580450	CG30087-RA,	FBgn0050087,	CG30087,	1	.
CG9916-RA	GCGGTCGCAAGCCATACACGATGGTCTCTTTTTGTGCAACTCTGATTCGACAGTTTCGGCACAGGTCG	68	-	chrX	16214321	16214389	16214321..16214389	CG9916-RA,	FBgn0004432,	Cyp1,	1	.
CG8849-RA	CGGTATCATTATCAAGTCCGAGGCACCTTTGCACGTCACCAAGGACATTCGTCTGGTTGACCCATCGGA	69	-	chr2L	4944635	4944704	4944635..4944704	CG8849-RA,	FBgn0031651,	mRpL24,	1	.
CG5444-RC	GTTTTATACAGCTTTACGATTTCATCCACTTGCAATATATTTTAGCCTCAACTTTAAATGCGTCGCGTG	69	+	chr3L	16113245	16113314	16113245..16113314	CG5444-RA,CG5444-RB,CG5444-RC,CG5444-RD,CG5444-RE,CG5444-RF,	FBgn0010280,	Taf4,	1	.
CG12509-RA	ACAAGAAATCAGCGCGACATTTGTCCAACTGGCGAGTGGAAAATGGAGCCAGGAGACTGCAGTCG	65	-	chr3R	23233601	23233666	23233601..23233666				0	no match
CG30486-RA	AGCCAGGAGGCGTTATCTACGGATTACTGCAACAAGGATCTGTGTCTGCCGGAAATAACGCATATCGCT	69	-	chr2R	8736362	8736431	8736362..8736431	CG30486-RA,CG30486-RB,	FBgn0050486,	CG30486,	1	.
CG5093-RA	CCATCGTCTGCGTAGTGTCTAAGCTGAATTGTGATATTTTGCAGTTAATTAGGATTTCCAGGTATTTGC	69	+	chr3L	9000155	9000224	9000155..9000224	CG5093-RA,	FBgn0035954,	Doc3,	1	.
CG8420-RA	AGGTGACCACGGAATATATCCACAACGAGTTGTAGTATTCCAGTTGCAAATGGACAAGCGAGATCCGGA	69	+	chr3R	5076980	5077049	5076980..5077049	CG8420-RA,	FBgn0037664,	CG8420,	1	.
CG14421-RA	TGCCAGCGCCAAGCCCCAGAACTTCCAGATCTTCGGTCGCCAGCGAGATGAGCCCGCCGCCCAAG	65	+	chrX	2835561	2835698	2835561..2835569,2835641..2835698	CG14421-RA,	FBgn0029644,	CG14421,	1	.
CG13787-RA	GGTGCAAACATCGAAGTTCTCCTTCTTTGCCGGCATAGTGCACTTCCTGTTCTTCGTCCTGTGTTTTGG	69	-	chr2L	7453975	7454044	7453975..7454044	CG13787-RA,	FBgn0041247,	Gr28a,	1	.
CG5081-RB	GCAGGCCCCTAAACCCCGTAATTCCCCACCCAATCCTTTGGACCTTAGGCGAGATTATGGCTTTAATCC	69	+	chr3L	21440822	21440891	21440822..21440891	CG5081-RA,CG5081-RB,	FBgn0086377,	Syx7,	1	.
CG1825-RA	GGCGTGGAAGCTCTTCAGTCTGATGCATCAGATCCATCAGGAGCCTAAAATCTCAATCAAGGAGGAGAA	69	+	chr2R	5478736	5478805	5478736..5478805	CG1825-RA,	FBgn0010342,	Map60,	1	.
CG32741-RA	CCATCCGCGATGCTCAGTAATTATTTTAATATTTAGTTTTTCGGGTTTCTTTTTGTTAAGCTTGGGAGG	69	+	chrX	6590681	6590750	6590681..6590750				0	no match
CG7233-RA	ACCGAATACGTGACGCCAATGATTAGCACCGTCTTGAAGAAATACCAGACGAGTGCCACCAAATCGC	67	-	chr2L	7976120	7976187	7976120..7976187	CG34421-RB,CG34421-RC,CG34421-RD,CG34421-RE,	FBgn0085450,	Snoo,	1	.
CG18812-RA	ACCTGAAGGCCTTCTATATCGTGCACCCCACTTTCTGGACTAAGATGATGACCTGGTGGTTCACCACGT	69	-	chr2R	3606999	3607068	3606999..3607068	CG18812-RC,CG18812-RB,CG18812-RA,CG18812-RD,	FBgn0042135,	CG18812,	1	.
CG18764-RA	AGCCAGCGACCACAAAACCCAAGCGGAAAAAACAGTACGTTACGTGGAAAAATATGACCGAGGAGCAGA	69	+	chr3R	7453437	7453506	7453437..7453506	CG18764-RA,	FBgn0042205,	CG18764,	1	.
CG12023-RB	ACCGCCGATACCCGATATGCATTTAGAACTACCTATATATAATTGTACAAGAGATTAAAGCCAGACACC	69	+	chr3L	1822140	1822209	1822140..1822209	CG12023-RB,	FBgn0027790,	GV1,	1	.
CG32705-RA	CCCTAGTTCGTGACCTTTTTTTTACGAAATTATTTGGAGTGGAGAGCATGTAAGGGTGTATCTATCTAA	69	-	chrX	9220851	9220920	9220851..9220920	CG34449-RA,CG34449-RB,CG34449-RD,	FBgn0085478,	CG34449,	1	.
CG7869-RA	GAGTCGTCGCACCAAGGCTTTGAAAAGAAAACGCAAACCCGTGACGTCCGTCAATTCAAGTTTCGGCG	68	+	chr3L	11060768	11060836	11060768..11060836	CG7869-RA,	FBgn0025355,	SuUR,	1	.
CG3917-RA	TCACAAGCGCACATTTACCATCATTCCCCACGCATGTCTTCTCATTTGCCATCCAACAAAGCGCACCAA	69	-	chrX	19455436	19455505	19455436..19455505	CG3917-RA,CG3917-RB,CG3917-RC,CG3917-RD,CG3917-RE,	FBgn0026430,	Grip84,	1	.
CG12697-RA	GCCTTCGATGCACAGAACAAGCCGTTTCCCTACAAGATGATCTTTCCGTACGATGCCCAGAGCAGTTGG	69	+	chrX	15869223	15869292	15869223..15869292	CG12697-RA,	FBgn0030715,	Or13a,	1	.
CG16848-RA	AGCGCTATGGACTACAGCTGAGGCGATACGAAGGAGTCCTTAAGGTTGCTTTTGAGCAGCTGATAGCCG	69	+	chr2L	13412914	13412983	13412914..13412983	CG16848-RA,	FBgn0032522,	CG16848,	1	.
CG16787-RA	CCCAGTTCCGGTGAAGGAAGTAGCACACAAAGTCCTTGCAAGATGTTGCGAAATTTCGGGATTTCATCA	69	-	chr2R	19844678	19844747	19844678..19844747	CG16787-RA,	FBgn0034940,	CG16787,	1	.
CG32791-RA	TGCCCTTTAACCCCATCATGCACAGCTTGTAACCCCTTCTTACCAACTATTTCTTGGTGTTTGCCAAAA	69	-	chrX	3405793	3405862	3405793..3405862	CG32791-RA,	FBgn0052791,	CG32791,	1	.
CG10570-RA	AAAGTACTCACCCTGTTGCAAACTGTACCGTGAACTTTGACTTCTCTACAAACGCATTGGAAGCGCAGC	69	-	chr2L	18810548	18810617	18810548..18810617	CG10570-RA,CG42502-RA,	FBgn0040992,FBgn0260228,	CG10570,CG42502,	2	.
CG9318-RA	CCTGTGCGTACCAACCAGATTCCCCGTCAGATTCCGGACCAATCGATCTACACACAGCCTATTCCTGG	68	-	chr2L	20731423	20731491	20731423..20731491	CG9318-RA,	FBgn0032880,	CG9318,	1	.
CG14360-RA	TTATGCTCTCGGAGACATCAGATGTCCTTATCATCGCCCAGTATATATTACCCACTTTGGTCCTG	65	+	chr3R	9936111	9936176	9936111..9936176	CG14360-RA,	FBgn0038203,	Or88a,	1	.
CG9474-RA	GGCAACTACTCCTGGCAAACGCAAGCGTAACAAACCCATCTACTTACAAGAACTTTAAGCCGCCGAGCC	69	-	chr3R	5587703	5587772	5587703..5587772	CG9474-RA,	FBgn0028401,	Snap24,	1	.
CG16836-RA	TCCGGGAATTATAATTCCTCCAGACCATAAATCAGCTGGATCCATGTCTTACACACTCACATCTGGAGC	69	+	chr2R	14276795	14276864	14276795..14276864	CG16836-RA,	FBgn0040735,	CG16836,	1	.
CG6517-RA	CAGCCCGTCTATCCCCCCACCAGCTACGTGAACCAGGAGTACGGACACAGCGAGAAGGTGAAGGG	65	+	chr3L	8720492	8720557	8720492..8720557	CG6517-RA,	FBgn0000357,	Cp18,	1	.
CG4346-RA	AGCGTGTGAGCAACGACTCCCTCATCATGATATACTATCACGATCTGACCATAGCCGTAACGGAGCTGG	69	+	chrX	13015643	13015712	13015643..13015712	CG4346-RA,	FBgn0250862,	CG42237,	1	.
CG31958-RA	CGCCCATTCTAAATTACAATCATACTGCAGTTAAAGGAATATTTTATGGTTTATTGTTGGATTATTTTA	69	+	chr2L	3786209	3786278	3786209..3786278	CG31958-RA,	FBgn0051958,	CG31958,	1	.
CG32832-RA	TCTGGCCGTCAACATAGCCGTCTTTCTCATCCAGGGTTATCTAATGGTCAAGCACCTAAGGTGGCGCAG	69	-	chr2L	16878667	16878736	16878667..16878736	CG32832-RA,	FBgn0052832,	CG32832,	1	.
CG6570-RA	GGAGTACCTGCTCCATTGGCTCTGATCAACGAAAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCG	69	-	chr3R	17259368	17259437	17259368..17259437	CG6570-RA,CG6570-RB,	FBgn0008651,	lbl,	1	.
CG11986-RA	CCCAGGATGTGAAGCTTTTGCGAATGGCTGGACTTTTTGACGTCTGGGAGGATGAAAGTGGCGACAAGA	69	+	chr3R	4841823	4841892	4841823..4841892	CG11986-RA,	FBgn0037656,	CG11986,	1	.
CG13659-RA	AGCGGAGGCATGGATCCATTTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT	69	+	chr3R	21127313	21127382	21127313..21127382	CG13659-RA,	FBgn0039319,	CG13659,	1	.
CG6824-RA	AGCGCCTGCTCAATCGGCACATGAAGTGTCACTCGGACATCAAGCGGTATCTGTGCACGTTCTGC	65	+	chrX	4962586	4962651	4962586..4962651	CG6824-RA,CG6824-RB,CG6824-RC,CG6824-RD,CG6824-RE,	FBgn0003028,	ovo,	1	.
CG3262-RA	TGGACGGGGATATCTTCGGGCCTACTATTCCACTTCTCATGAATGTCCATGGTGAGCCGGTTGTGAACG	69	+	chr2L	22240201	22240270	22240201..22240270	CG3262-RC,CG3262-RD,	FBgn0032986,	CG3262,	1	.
CG5562-RA	GGCTGGGAGCACTACCCGTTCTGTACCACCTGAACGACGAGAATGTGAACCTGAAAAAGTATAGAAACA	69	+	chr2R	19740547	19740616	19740547..19740616	CG5562-RA,	FBgn0024234,	gbb,	1	.
CG14148-RA	GAACCGCTGCGTCTGCGTGGTCATTCTCCAGTGGAAGAACACCCCCTGCTCGCGAAAAGAATGCC	65	-	chr3L	10933177	10933242	10933177..10933242				0	no match
CG9432-RA	ACTGAATTCGCAGGCTGTGTGTCCATAAAATTGAGGTTTCCTCGCACTAATCCTAAACAGTCTGGCACA	69	-	chr2R	2615439	2615508	2615439..2615508	CG9432-RA,CG9432-RG,	FBgn0010482,	l(2)01289,l(2)01289,	1	.
CG8564-RA	CAAGTCCGCCAAATTTGTGGGCACTGATTGCAACCGAAATTACGACATCTTCTGGAACAGCGGACCCA	68	-	chr3L	7379682	7379750	7379682..7379750	CG8564-RA,	FBgn0035776,	CG8564,	1	.
CG13170-RA	AGAGCCTTCTGAGTCTGTCGACAGTCCTGTTTGTCCTGTCATTCGCGTGTGTGGTCCTGGCCAAC	65	+	chr2R	8127917	8127982	8127917..8127982	CG13170-RA,	FBgn0033703,	CG13170,	1	.
CG8086-RC	CCGCCTACAGCTTTGGGATCAAGCACTCCCAGTATTTGGGTCGCCTAAACGAGAAGAACACCGAGTTTG	69	-	chr2L	8244413	8244482	8244413..8244482	CG8086-RE,CG8086-RF,CG8086-RG,CG8086-RH,	FBgn0032010,	CG8086,	1	.
CG30101-RA	AGCACAGCGAATTGTGGAGTAATTGTTCCCCCGTGAGACGTCGAATCAGCAGCTCAACAATGCGAATGT	69	.	.	.	.	.	CG30101-RA,	FBgn0050101,	CG30101,	1	.
CG10129-RA	ACGCATCAAAACCGTAGCCATTACCCGTATACACAATGCTACCAATTGCGATTCCTGCTACAAGCTGCA	69	-	chr3L	6588683	6588752	6588683..6588752	CG10129-RA,	FBgn0002926,	ndl,	1	.
CG3633-RA	GCTTCAATGCCTTCTTCCATCCGGTTACTCGCATTTTCTCCGACAACAAGCAGCTCGTGACTCCGG	66	-	chr2R	18306960	18307026	18306960..18307026	CG3633-RA,	FBgn0034727,	mRpS29,	1	.
CG32019-RA	GGATGGCGATGCAGTGAATCTGGCTTGTCGCATAATTGGAGCTCAACATTTCGATGTCGTATGGCTGCA	69	+	chr4	795628	795697	795628..795697	CG32019-RC,CG32019-RF,CG32019-RG,	FBgn0005666,	bt,	1	.
CG6604-RA	CCACCAGCCTCCAATCGAGCAGAAAGTCCATAGGATACAGCTACCAACGAAAACAACTAAACCACCC	67	+	chr2L	5415861	5415928	5415861..5415928	CG6604-RA,	FBgn0016660,	H15,	1	.
CG11310-RA	TGATGTCGTTCGGCAAGATTGTGGTATTCCTGGTCCTAGTCCTAGTTCAACTAATCCATTGTACGCGCT	69	-	chr3L	21285632	21285766	21285632..21285684,21285749..21285766	CG11310-RA,	FBgn0037067,	Cpr78Ca,	1	.
CG10657-RA	TGATGAGGATTCTCAGGTGGCTGGATATGTGTACATCAACGACGAGAGTGGCATGAACATGGGCTTCGT	69	-	chr3L	12485726	12485795	12485726..12485795	CG10657-RA,	FBgn0036289,	CG10657,	1	.
CG5127-RA	GCTGGACGAGATGCATGACTATGTGGCCAGGAAGCTACCCAAACTAACCGAGCTTAAGAGCAAAGTCCT	69	+	chr3R	21300423	21300492	21300423..21300492	CG5127-RA,	FBgn0039335,	Vps33B,	1	.
CG10084-RA	TGCACCAGGTGACATGTCCGTTAGCCTAGAGAACCCCAAACAATTAATCCAGTCCGTCAGTGAGAGCGA	69	+	chr2L	19497224	19497293	19497224..19497293	CG10084-RA,CG10084-RB,	FBgn0002044,	swm,	1	.
CG30143-RA	GGCAACTCTCTCGCCTAATGTCCAAAACGTTGAAAGCATCAATATGCAAAGTGGATTTTCGGGCAAGGA	69	+	chr2R	16363833	16363902	16363833..16363902				0	no match
CG9288-RA	AGCACCCTGCTCTAGCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAGCCAGA	69	+	chr3R	9605965	9606034	9605965..9606034	CG9288-RA,CG42375-RA,	FBgn0260464,FBgn0259721,	CG9288,CG42375,	2	.
CG8858-RA	CGAGCAGCCAGGAAATCGCTCCATTGCACTTACCATTCAGTCCATTAACAAGCGTCACCATGAACTGCT	69	-	chr2R	8081266	8081335	8081266..8081335	CG8858-RA,	FBgn0033698,	CG8858,	1	.
CG10060-RA	TTCCGGACGTTTATTCTTTGCCAAGAGCTTGACAGCGTTATTTAAGGTGAACCTAAGGCCTGGAGTTGT	69	-	chr3L	6965924	6965993	6965924..6965993	CG10060-RA,	FBgn0001104,	G-ialpha65A,	1	.
CG12640-RA	CGCCACAAACCCACAACCAGAACCAGTACCAGTACCAGAATCACAGCCTGAATCCGAGTCCGAATCAGA	69	-	chrX	10326673	10326742	10326673..10326742	CG12640-RA,	FBgn0030202,	CG12640,	1	.
CG30095-RA	CCAGCGGTATTCATCTCATCTCCAGTCTGGAGCATCAGCGCACTTTTCTTCATCTCTTCCATGTGCCCT	69	+	chr2R	12011133	12011202	12011133..12011202	CG30095-RA,	FBgn0050095,	CG30095,	1	.
CG7211-RA	GAAGGGGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGGCTAAATGTTC	65	+	chr2L	7747612	7747677	7747612..7747677	CG7211-RA,	FBgn0031941,	CG7211,	1	.
CG5471-RA	GCAGAGCGTTTTGCATAGCAGTGGCTTTCATCTGCATAAAAGCGAAAGAACCATCTCACACCATCATCA	69	+	chr3R	22455580	22455649	22455580..22455649				0	no match
CG11180-RA	GGCTACGGAATCAGCGAAAACGTCGAGCTAAATGTGGTGGACTGTCCTTACGATGAAACGCGCATTCGC	69	-	chr2R	16508694	16508763	16508694..16508763	CG11180-RA,	FBgn0034528,	CG11180,	1	.
CG8525-RA	GGCAACGTCGTCATCAGCTGTCCAACAAGCAAATTGATAAGACTCTCCATGTTCTTCGGTTGAGGTTGA	69	+	chr2R	8313062	8313131	8313062..8313131	CG8525-RA,	FBgn0033735,	CG8525,	1	.
CG8474-RA	GGCGGCAATAATCAATCGCTTCTGTGCACAGAGTGTGGAGTGAGTTACTCGACTCAAAAGGCGTTGGCA	69	-	chr3L	13956856	13956925	13956856..13956925	CG8474-RA,	FBgn0025874,	Meics,	1	.
CG9987-RA	ACACCACACCCGATGATCTCGACATGCACGTTATCTATGACGTTTCGCACAATATTGCCAAGGTGGAGA	69	+	chr2L	19431782	19431851	19431782..19431851	CG9987-RA,	FBgn0032781,	CG9987,	1	.
CG13952-RA	TAGCAACACGATCCTTCTGCAAACCCCCATCAATGCCAGTCAGTTGGAGAGCGTTCTAAAGGCCC	65	+	chr2R	5337056	5337121	5337056..5337121	CG42332-RB,CG42332-RF,CG42332-RG,	FBgn0259234,	Camta,	1	.
CG3957-RA	CAGGAGCAACAACCAATCCAAGTACAAAGTAGCCACAAAACGTCAGTTATTCACTAAGTGCACAGTTCG	69	-	chr2R	19435220	19435289	19435220..19435289	CG3957-RA,CG3957-RB,	FBgn0034876,	wmd,	1	.
CG16777-RA	CGGCTAATCCCAGTCATGTTCCGCATCATCAGATGGATCTATCGCCCCTGAGTGAGAATGGTTCGCCAA	69	+	chr3R	5267105	5267174	5267105..5267174	CG16765-RL,	FBgn0261552,	ps,	1	.
CG7074-RA	GGGCAGCCATGATCTGCGTGTTCCACTTGAAAATTTTCCATGCCTGCAACATCCTATCGTCGGCG	65	+	chr2L	2219261	2219326	2219261..2219326	CG7074-RA,	FBgn0031399,	mio,	1	.
CG30492-RD	GCCAAGTACAGCAACAATAGTCTGCTATTCTAGGAGCTCTGGGGATCATTTTGGTCTTAGGCCCCACGA	69	+	chr2R	3536823	3536892	3536823..3536892	CG43340-RM,CG43340-RE,CG43340-RJ,CG43340-RN,CG43340-RK,CG43340-RC,CG43340-RL,CG43340-RG,	FBgn0263077,	CG43340,	1	.
CG12028-RA	TGGCATCGATACCACTTCGTATGCCTCGGCATTTCTGCTCTATCACATAGCACGAAATCCGGAGGTGCA	69	+	chr3L	4063366	4063435	4063366..4063435	CG12028-RA,	FBgn0000449,	dib,	1	.
CG13670-RA	GGGACGAGGTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGTTAAATAC	65	.	.	.	.	.	CG13670-RA,	FBgn0035873,	CG13670,	1	.
CG18136-RA	CCGCTGCATGCATCTTAAAGACAAAGATCCCGATGCCTTCCTCAAGCTTTACAACCTGGAGGATCACCT	69	-	chr3L	18995623	18995692	18995623..18995692	CG18136-RA,	FBgn0036839,	CG18136,	1	.
CG12921-RA	ACCATTACAGAGTAAGCATACAAATGGTTTCAGTTTTCTTTTTGACGTATTAGCTATTTTTATCC	65	+	chr2R	5954168	5954233	5954168..5954233	CG12921-RA,	FBgn0033480,	mRpL42,	1	.
CG14225-RA	GACATCCGGGTTGAACTGCCAGTGATGAGCGAAGAGCCCACAGCAAATCCACTTGGCGATGTACG	65	-	chrX	19566900	19566965	19566900..19566965	CG14225-RB,CG14225-RC,	FBgn0031055,	et,	1	.
CG12112-RA	TGGAACCGACGCTACCCTCGGAAAAAGTCTTATTCAAAGCCATGAGATGCGTTAAGAATTGCGCAGCCA	69	-	chrX	8453312	8453381	8453312..8453381	CG12112-RA,	FBgn0030048,	CG12112,	1	.
CG13083-RB	AGCTGCTATCACAGGCCGTCATAGGGGAACTCATCGGCTTGGACAATAAAGCGAAGGTCCTCCAG	65	+	chr2L	19487992	19488057	19487992..19488057	CG13083-RB,	FBgn0032789,	CG13083,	1	.
CG12532-RA	TCCATGGCGCACATCCGATGGCATAGGATAAGCACAAAGCAATTGGAGCTATCGATTTGCGTGTGTTGA	69	+	chrX	19628267	19628336	19628267..19628336	CG12532-RA,	FBgn0010380,	Bap,	1	.
CG9885-RA	CGTGGCCATGCTCTATCTCAACGACCAAAGTACGGTGGTGCTGAAGAACTACCAGGAGATGACCGTGG	68	+	chr2L	2458472	2458540	2458472..2458540	CG9885-RB,CG9885-RC,CG9885-RD,CG9885-RE,CG9885-RA,	FBgn0000490,	dpp,	1	.
CG14247-RA	TCGCCGGATCCCAACCGATTCTACCTGTGTCCCAGCATAAATGCCACACCTCTGCTGCTCAACTG	65	+	chr3R	22563929	22563994	22563929..22563994	CG14247-RA,	FBgn0039454,	CG14247,	1	.
CG8540-RA	CCTCGGGTACCAGCTTTGCAGTCCAGCTCTCTGTTTCTGCCTCGTAACAATTGCTAGAAATCCATCGGT	69	+	chr3L	7485968	7486037	7485968..7486037	CG8540-RA,	FBgn0035790,	Cyp316a1,	1	.
CG4510-RA	CCAGGCGGAGATCGTGAAATGTCTGCGGGAGGAGTATGAAATCGAACACAACAAGGATCAGAAGCCGGA	69	-	chr3R	15730436	15730505	15730436..15730505	CG4510-RA,	FBgn0038746,	Surf6,	1	.
CG5745-RA	AATTCCAAGTGGTGCTAGACTCGCCTCAACTGGACTTGGTGGCCCTCAAGAAGATCAGCTGGTCT	65	+	chr3R	16929232	16929297	16929232..16929297	CG5745-RA,	FBgn0038855,	CG5745,	1	.
CG6620-RA	GGCCAGAAATTGACTGGTTTCGAGTTTGCATTGTGTAACGACTTATTTCAGATTTTACTTTTATGTTTA	69	-	chr2L	10856816	10856885	10856816..10856885	CG6620-RA,	FBgn0024227,	ial,	1	.
CG3994-RA	ACATCGGCGGTTCATTTGCGCTATAACTTCTTTGAGACCACCATCCAGATCGAGGACTATACCGCCCAA	69	-	chr2L	15228967	15229036	15228967..15229036	CG3994-RA,CG3994-RB,	FBgn0028516,	ZnT35C,	1	.
CG3033-RA	AGGCCATCGAGGGAATAGCCAGGAGTCTGAACAACCTTCTGGAGCGCTTCCATCAAAGCTTTTTCTTCT	69	-	chrX	5766100	5766169	5766100..5766169	CG3033-RA,	FBgn0029818,	CG3033,	1	.
CG7241-RA	CGACATGCTGGATCTGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGATGGTGAAATCCG	65	+	chr3R	8790365	8790430	8790365..8790430	CG7241-RA,	FBgn0038095,	Cyp304a1,	1	.
CG9425-RB	GCAACCGTCTCCGAGCTCTATGAGATTTGGACCAATGACGCACGAGCTACTCCCACCCAATGTAAGCAT	69	+	chr3L	14790812	14790881	14790812..14790881	CG9425-RA,CG9425-RB,	FBgn0036451,	CG9425,	1	.
CG8962-RA	ACCACTCTACGATCTGCTTTCTCAAATTCTCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGA	69	-	chrX	15678351	15678420	15678351..15678420	CG8962-RA,CG8962-RB,	FBgn0025809,	Paf-AHalpha,	1	.
CG3897-RB	GCGGAAGTTCAACGTCAATCCGGAAGAGTATTCCACGGAGCTGTGAAATCAGGGGAGGACCAGGAGTAG	69	-	chr3L	17389630	17389699	17389630..17389699	CG3897-RD,CG3897-RB,CG3897-RA,CG3897-RC,	FBgn0027660,	blot,	1	.
CG4871-RB	GGCACACTGGAGGATTGGCTCACTAGCGCTGACTACGACCTCTTTTCCAACTACGAGCTGTACAGG	66	-	chr2R	20579630	20579696	20579630..20579696	CG4871-RB,CG4871-RA,	FBgn0035050,	ST6Gal,	1	.
CG6501-RA	ACGGTAACAGCCCGTATGGTGCTTAACGATTGGCAACGAGGCAAACTTCCTTTCTACGTTCCACCCG	67	-	chr2R	13453986	13454053	13453986..13454053	CG6501-RA,	FBgn0034243,	ns2,	1	.
CG5725-RB	ATTGTAAATGCATGAAATTACGTATGTATGGATAAAGTGCCTGCTAGAAAGCAACGAATTTTGGC	65	+	chr3L	20384469	20384534	20384469..20384534	CG5725-RD,CG5725-RB,CG5725-RA,CG5725-RC,CG5725-RE,CG5725-RF,CG5725-RG,	FBgn0011205,	fbl,	1	.
CG8184-RB	AGCCACCAGTAACCAACAAACCATGGACGCAACACTATTCCTACAACGCCCTCAAATACACGGGTGCAA	69	+	chrX	15625222	15625291	15625222..15625291	CG8184-RB,	FBgn0030674,	CG8184,	1	.
CG4646-RA	ATGAAGTGCAAGATGTGCAGCCGGGAGAACAGCATCGACATCGTCGACAAGTCGAATGCTCCCTA	65	-	chr2R	9107382	9107506	9107382..9107389,9107448..9107506	CG4646-RA,	FBgn0033810,	CG4646,	1	.
CG12998-RA	TGGATGGTGGTAAAGAATCGAAGAGCTACCATCTCTAGGAGACGAAAAATCCAAGCACAATCCCA	65	+	chrX	17113342	17113407	17113342..17113407	CG12998-RA,	FBgn0030829,	CG12998,	1	.
CG14132-RA	AGTGCTGTCCGCAGTTCAAGTGCGTCGATTTCAAGACCGGCAAGGACTTTATCGTCTCGCTGTAG	65	-	chr3L	11705702	11705767	11705702..11705767	CG14132-RB,	FBgn0040817,	CG14132,	1	.
CG13777-RC	AGCATTAGCAATAAACGGACACATGTTATCCAATCACTCGCGATCACACAAAAGCTCGCAGTTAGCAGG	69	+	chr2L	7055593	7055662	7055593..7055662	CG43227-RC,CG43227-RD,CG43227-RF,	FBgn0262872,	milt,	1	.
CR32934-RA	TCCTGACAATTAACTTGCAACACTCGCATGCCGGTTGGCTGACGGATATAAAGAAGAAATCTGAGGAGA	69	+	chr3R	26038661	26038769	26038661..26038711,26038750..26038769	CR32934-RA,	FBgn0000281,	Cec2,	1	.
CG4069-RA	TGCCAGTCCCTCACAGCTGCAGTTCCATCACTACAAGGATCTCTGGAAGTTCGCACTGAAATCCCG	66	-	chr3L	12529697	12529763	12529697..12529763	CG4069-RA,	FBgn0036301,	CG4069,	1	.
CG10011-RA	CAAAGCGGTCCGTTCCTGTACCTTAACACTTGTCACTAATTTTATGTAACCCTTAAGCCGGACAAACCA	69	-	chr3R	24434304	24434373	24434304..24434373	CG10011-RA,	FBgn0039590,	CG10011,	1	.
CG9326-RB	GGAGCAGTGGGTGCCTGTCAACTGGATCTACTAGAATCCCATGACCCTTTGCAATTGCGCCTTTATGCA	69	-	chr2L	20789211	20789280	20789211..20789280	CG9326-RB,CG9326-RD,CG9326-RC,	FBgn0250785,	vari,	1	.
CG8009-RB	CGCGAATGGTACTGGGAGACTTTAATATGAGCTGTGACGACACGGGGAAGCTGATACTCAAGCCGCGG	68	+	chr3L	10632377	10632445	10632377..10632445	CG8009-RA,CG8009-RB,	FBgn0036090,	CG8009,	1	.
CG5174-RK	CGCCGTGTTTCACGCCACTTCCTTTAACACAATAACCAACTCTCGCCTGTTTGTAACTAAAGCGCACCT	69	+	chr2R	14312229	14312298	14312229..14312298	CG5174-RK,	FBgn0034345,	CG5174,	1	.
CG5052-RA	TGCACCAAACTCCTGGAATAACCCCGTTCAAAAGCACTTCTCTGAAACTCGAGGGTAGTATTGCCAAGC	69	+	chr2L	10363279	10363348	10363279..10363348	CG5052-RA,	FBgn0003087,	pim,	1	.
CG18039-RA	TGGCCCTTCTGAGTTGGGCGTAGACAATCTGAGTGGCATCTACGTTGTCTTGGTCATCGGATCCATCAT	69	-	chr3R	16474824	16474893	16474824..16474893	CG18039-RA,	FBgn0028422,	KaiRIA,	1	.
CG30394-RA	GTTACTGAAAACGAATCCTACCAAGCGAGTCCAAATGGAACCCAAACTTCGCTGCAGACGTAATGCGGA	69	-	chr2R	17207659	17207728	17207659..17207728	CG30394-RA,CG30394-RB,	FBgn0050394,	CG30394,	1	.
CG13228-RA	CACCGATCCTCTCCAGCGTCGACGAGGAGAACATTAGAAGACCCCGTCACATTGGTGGATTTGGA	65	+	chr2R	7121562	7121627	7121562..7121627	CG13228-RA,	FBgn0033588,	CG13228,	1	.
CG3189-RA	GGCGCTCTGCTCTTCTATGTGGTGCACAAGGATTCGCGAGTGGAACAGGAGTTTATAAACGAACGGCGA	69	-	chr2R	2548206	2548275	2548206..2548275	CG3189-RA,	FBgn0033083,	Dpit47,	1	.
CG5186-RA	GCTATATCGAAACACGGCCCTGATATAATGTTTCACCCTCATTAAATCCAACACACATCCCACTTTGCA	69	+	chr2R	14332680	14332749	14332680..14332749	CG5186-RA,CG5186-RB,	FBgn0261477,	slim,	1	.
CG12800-RA	ATCCGGGTCTTCCCATTCTGAATCGTGAATGCACCCAGGACTACACAGTACCCGACACCAACCAC	65	+	chr3R	18525375	18525440	18525375..18525440	CG12800-RA,	FBgn0039006,	Cyp6d4,	1	.
CG5935-RD	AGTTTCCGATGCCGATAGTGATGTCCCAAAACGTAAACGTGGTTCCGTGGGTAAACGTGGACGACCG	67	+	chr2R	12746483	12746610	12746483..12746505,12746565..12746610	CG5935-RB,CG5935-RA,CG5935-RC,CG5935-RD,	FBgn0026533,	Dek,	1	.
CG13834-RA	ATCCTGCCGAGGCATCACATGCTGTGGTAAGTAGTCGCCACTTGTGCTCCATATTGTTGGCCTAA	65	-	chr3R	18833684	18833749	18833684..18833749				0	no match
CG1906-RB	AGGACCACACCGAACAGATTACTCCGATCGGATCCCTCTGAAGGACCCATCCATCTATGTGAACGTTGT	69	+	chr3R	25424255	25424324	25424255..25424324	CG1906-RB,	FBgn0086361,	alph,	1	.
CG5586-RB	GAAGTCCAAGAGCCTAGACTCCTGCGACCTGTTGTCCCTACAGACTAAGCTGTCCAGCAAGGAGC	65	+	chr3R	23458308	23458373	23458308..23458373	CG5586-RD,CG5586-RE,	FBgn0039530,	Tusp,	1	.
CG5567-RA	CTGTTCGTGGCTACCAATACGGATGAGCGTTTCCCCATGCCCAATATGATAGTACCAGGCAGCGG	65	-	chr3L	17835143	17835208	17835143..17835208	CG5567-RA,	FBgn0036760,	CG5567,	1	.
CG9298-RA	TGCGAAAGGTTTACGAGCTGTACTCAGACTACGTGCTCAAGAACCCCTTCTACTCCCTGGAGATGCCCA	69	+	chr2L	8686882	8686951	8686882..8686951	CG9298-RA,	FBgn0260861,	Trs23,	1	.
CG31907-RA	GGATTGCGAATTGCGAGGCTTTGAGGATCTGAAAACAGGAGCAGTATATTGCCAACTGATGCACAGACT	69	-	chr2L	7060521	7060590	7060521..7060590	CG31907-RA,	FBgn0051907,	CG31907,	1	.
CR31271-RB	TGGCAAACATGGCATGTCACGGTCCCATTTAACGTGGAAAATCGGCCCAGAAATTCAACACGACGACAA	69	+	chr3R	12676352	12676421	12676352..12676421	CR31271-RA,CR31271-RB,	FBgn0020546,	iab-4,	1	.
CG32940-RD	CGTCACATTTACCGTCCACGTACGCTCAATCGAACTCTGGGTTTCCCTCTTCAAAAGAGCCTCTCCTGC	69	-	chr3R	4607362	4607431	4607362..4607431	CG42599-RE,CG42599-RF,CG42599-RB,CG42599-RC,	FBgn0261015,	Pif1A,	1	.
CG10612-RA	GACGACTCCAAGCGTCGCGACCTGTTTGTATTCGTGAGGCAAACCATGTGTATAGCGGCCATGTATCCC	69	-	chr3R	1224816	1224885	1224816..1224885	CG10612-RA,	FBgn0037322,	Or83a,	1	.
CG6607-RA	AGCCCTGCAAATGCTCGAAGAGGAGTTGACTACGACGCGTATTAACTACGAGGAGCAAATCAGCGTGCT	69	+	chr3R	20355197	20355325	20355197..20355225,20355284..20355325	CG6607-RA,	FBgn0039204,	CG6607,	1	.
CG6579-RA	TGCGAATGTGGAGCGTGCTGAAAACAAACCCGAAACTAATTTCAGTTGTTCAGCGTCTGCCAAACGGTT	69	-	chr2L	12177660	12177729	12177660..12177729	CG6579-RB,	FBgn0032422,	atilla,	1	.
CG12072-RA	GCTAGCAATGTTAGACCAACTTGTTGAATGCCAAATGAAATTGTTTAGCCCCACGAGGAAAACGCGGGG	69	-	chr3R	26615813	26615882	26615813..26615882	CG12072-RA,	FBgn0011739,	wts,	1	.
CG13941-RA	TGGAGATCTTCGAGACGAAGCAGTCCTACGACGAAGTGATCGACTCATTCATCTGCAAGCAGCGA	65	+	chr2R	10249893	10249958	10249893..10249958	CG13941-RA,	FBgn0033928,	Arc2,	1	.
CG8127-RA	TTTCCACCCTTCTATCGATCTTTCTATCTGATCATCTAGCTACCCGTATTCCTGATTTCTCCTTTGGCA	69	-	chr3L	17945897	17945966	17945897..17945966	CG8127-RC,CG8127-RA,CG8127-RF,	FBgn0000568,	Eip75B,	1	.
CG6696-RA	CACAACAGTCCTGCCTTCAACTTCTGGACGGAGGACAGCGATACGAACATATGGGAGCATTGCGG	65	-	chrX	18555877	18556004	18555877..18555935,18555997..18556004	CG6696-RA,	FBgn0030947,	CG6696,	1	.
CG30152-RA	TGCTGTAATCACCCAAGCACACAACGGTAAAGATAAAACCAGGCGAGATAACACCACGCACAGGTGCCA	69	+	chr2R	16558815	16558884	16558815..16558884	CG30152-RA,	FBgn0034543,	CG30152,	1	.
CG1275-RB	ACGAAACCGAACCTGATCACACGGATGGTGCTTTCTTAGTGATGGAGATGGAGATTCGTCAAGATGAGT	69	-	chr3L	2252961	2253030	2252961..2253030	CG1275-RB,CG1275-RC,CG1275-RA,CG1275-RD,	FBgn0035321,	CG1275,	1	.
CG12479-RA	TGGGCGTGGCATATCGTGGCTGTGAAAAGGAGCTCAACGATGTAAAGTTTGGCCAACGAAAGTGA	65	-	chrX	14045722	14045787	14045722..14045787	CG12479-RA,	FBgn0040871,	CG12479,	1	.
CG30438-RB	TTACTAGAGTGGGGTGCTTAAATCTTAAGAAGAATACGTTGCGATTCAAAGCGTCAAGCAAATGGATCG	69	+	chr2R	1436516	1436585	1436516..1436585	CG30438-RA,CG30438-RB,CG30438-RC,CG30438-RD,	FBgn0050438,	CG30438,	1	.
CG1315-RA	CTGGACACTAGTTGCGTCCTCAAGTGGTTGCTGGACAAGCAGTATGAGGTCATTTGCGTCCTGGC	65	-	chr3R	2470004	2470069	2470004..2470069	CG1315-RA,	FBgn0026565,	CG1315,	1	.
CG11255-RA	ACACTCAGACACATACAAAAGCATACACATGTGAAATGACATGAACAAATAGAGAGAGTGAGGCTTGTG	69	-	chr3L	13013168	13013237	13013168..13013237	CG11255-RA,CG11255-RB,	FBgn0036337,	CG11255,	1	.
CG6700-RA	CCACCACGAACTACAACTGCAACGAGATCCAGCCTGCATGCAAAATTATCGGAAGTTCAAACTCAACGT	69	-	chr2L	10838196	10838265	10838196..10838265	CG6713-RB,CG6700-RA,	FBgn0011676,FBgn0032305,	Nos,CG6700,	2	.
CG12361-RA	AGCAGCACCAAGGTGGCTCCGAGTTCATGAAACTCTACTACGATGACTACGACGACTCCAACTCGGACA	69	+	chr3L	1933353	1933422	1933353..1933422	CG42234-RC,	FBgn0261723,	Dbx,	1	.
CG12883-RA	ATCGCATCCAGAGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAGGGAC	65	+	chr3R	23505574	23505639	23505574..23505639	CG12883-RA,	FBgn0039538,	CG12883,	1	.
CG32751-RA	GGGAAACCCTCGAGGAACACCAGTCACTACAGCTATCGAGTGGGCATCTATGAGGGTTGGCGTAATGAG	69	-	chrX	6091211	6091280	6091211..6091280	CG32751-RA,	FBgn0052751,	CG32751,	1	.
CG8569-RA	GCGCTGCGATAAAAGAACTGCAGTGTCACATGATGTTGTCCCACTATTCCGCCTCGCTATTCGGCTTCC	69	+	chr2R	8408186	8408255	8408186..8408255	CG8569-RA,	FBgn0033752,	CG8569,	1	.
CG9509-RA	CGCAGTGAGGAGTACTGGCGATGCTATGCCAAATACTTCACCGTCACCTGTTACCATCAATCGGGCACC	69	-	chrX	14800949	14801018	14800949..14801018	CG9509-RA,	FBgn0030594,	CG9509,	1	.
CG31285-RA	TCGACTTACTGCACTTGCTCCGAGAAAAGGTGGAGAATTATCAGGTGTTCGAAGGAGCCTTGGGCA	66	+	chr3R	18242010	18242076	18242010..18242076	CG31285-RA,	FBgn0261279,	lqfR,	1	.
CG17996-RA	TCGGAAACAGAACTCAGCCCTGAAGGAATGCCTCACCCAGTGGTATCAGAACGAAGCCTTCAAGGA	66	-	chr2L	16730635	16730701	16730635..16730701	CG17996-RA,CG31812-RB	FBgn0032595,FBgn0051812	CG17996,CG31812	2	.
CG13530-RA	TCCACGTGTACAACTTTGGCCTCCAAATGCGAGAATCTAGCACCCGAAAGTCACCAAATGATCTGCGAA	69	-	chr2R	18664084	18664494	18664084..18664094,18664435..18664494				0	no match
CG5268-RA	AGCCAAGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAGAACTACGAGCATCT	69	+	chr3R	11760112	11760181	11760112..11760181	CG5268-RA,	FBgn0038387,	blp,	1	.
CG4268-RD	CCGAGAACCGAATACAGAAAACCCGAGATTCGCAATAGAGATCCGATAAGCTCCGAACCGATGGATCGA	69	+	chr3L	20765963	20766032	20765963..20766032	CG4268-RE,CG4268-RF,	FBgn0016696,	Pitslre,	1	.
CG30471-RA	GTGGTCCTACGGCATTGGAATCGCCAAGAAGTTCGAGTTCTCCTTCGACTCCACCTATGCGACTGG	66	+	chr2R	11424480	11424546	11424480..11424546	CG30471-RA,	FBgn0050471,	CG30471,	1	.
CG3222-RA	TCGAGTTGGTTTGGTTGCTTCGACTACACACACAAAATTCGTCCCCACACCCCAAACACAGAGAAACAA	69	+	chr3L	9592089	9592158	9592089..9592158	CG3222-RA,	FBgn0036014,	CG3222,	1	.
CG18591-RA	GAAAATTTGTTTAACTCAAATTAAGTCGTCGGAAATCAGCAAAAATGTCGTTCAAAGGAAATCCCAAGG	69	-	chr2L	7885318	7885387	7885318..7885387	CG18591-RA,	FBgn0261790,	SmE,	1	.
CG13476-RB	GGCGTTTCTCGACTTGGATCCGAGTTCCGACGAGACAGAAGTTCTGAATGACCGTAGTCTTGCAGCGTC	69	+	chr3L	14698954	14699023	14698954..14699023	CG13476-RB,	FBgn0036441,	CG13476,	1	.
CG12155-RA	ACGCAGCAAATTTCCCTGGTGGATGTAACAGAGGCGACCAGTACCAGTGTGACGATTTCAAGCACG	66	+	chrX	7624743	7624809	7624743..7624809	CG12155-RA,	FBgn0029957,	CG12155,	1	.
CG5422-RD	GCGAGGTACATGGAAACCTGGTAAAGTGCTTCTGGGGCAAAGAGAACGGAGGCGATAACTCGGCCAATA	69	-	chr3R	19870309	19870378	19870309..19870378	CG5422-RD,CG5422-RB,CG5422-RF,CG5422-RC,	FBgn0005649,	Rox8,	1	.
CG14788-RA	TGGAACCTAGCAAGATGAACATGATCCTGGTAAACAAGTCGGACCTGCTCACTGAGGAACAGCGTCGCC	69	-	chrX	1357401	1357470	1357401..1357470	CG14788-RA,	FBgn0028274,	ns3,	1	.
CG3000-RA	AACAAGTCCGTTCTGAATCTGTTTGCCAATATCAGATAAGGACAATAACTCCAAGCGAGCGAAGACTGA	69	-	chrX	4561995	4562064	4561995..4562064	CG3000-RB,CG3000-RA,	FBgn0262699,	rap,	1	.
CG10713-RA	CATCGCCATGCATTTCTGGATTGACAAGCGCTCACAGCAGTGCGGATTTGGACGGTCTCGCGTGG	65	-	chr3L	13423979	13424044	13423979..13424044	CG10713-RA,	FBgn0036360,	CG10713,	1	.
CG32794-RA	GCACCCAATGCCAAAAATCAATTGCTTGGCCTAGAATCTAGAAAACGATCTCTCAGTGTGTGACT	65	+	chrX	2785010	2785075	2785010..2785075				0	no match
CG4211-RB	TGGCAATAGCAATTCGCCATTCGAGGTTTTTAGAGGCAATAACAATAACAATTCCACAATGATTGGAAA	69	+	chrX	16259511	16259653	16259511..16259546,16259619..16259653	CG4211-RB,CG4211-RA,CG4211-RC,	FBgn0004227,	nonA,	1	.
CG32727-RA	ATGCTGGCTAAACATCCGGATCGAAACGGCTCACCATATCTGGCGGGAAAAATCCACAAGCCCAA	65	+	chrX	7301665	7301730	7301665..7301730	CG32727-RA,	FBgn0052727,	CG32727,	1	.
CG4733-RA	CGCTGGGCGATTTGAAACGATGCAAAATGACGCACGTCTTCTTCGATACCTTCTTCAATCTGGAGAAGT	69	+	chr3R	15724014	15724083	15724014..15724083	CG4733-RB,	FBgn0038744,	CG4733,	1	.
CG14405-RA	CCCCTTCGTTGTGGTTCCCCGACTAAATAACGTGTTGGGACCCACTCTCAAAGGACGCTACAAAGTGGT	69	-	chr2L	20820244	20820313	20820244..20820313	CG14405-RA,CG14405-RB,	FBgn0032888,	CheB38c,	1	.
CG7883-RA	CTGCCGGAGAGCTCTTTTGCAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGAGTGC	65	-	chr3R	25761140	25761205	25761140..25761205	CG7883-RA,	FBgn0039726,	eIF2B-alpha,	1	.
CG30000-RA	TCTGGCTGGAAAAGGACTTCTTAGTCGGCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAA	69	+	chr2R	5494187	5494256	5494187..5494256	CG30000-RA,	FBgn0050000,	CG30000,	1	.
CG13588-RA	CCCGAGCTTCTCGATAAGCTGCACAAGGAAGGGAAGATTGTGTTTACGCCGTGCAAAAACATTCCCGGT	69	+	chr2R	20497665	20497734	20497665..20497734	CG42360-RA,	FBgn0259742,	CG42360,	1	.
CG30197-RA	GCGGGTGATTGTCCTTCATCCACCAAGGTTCAGAACTGTACGCCAAAATGCCTGCATGACAGCGAG	66	+	chr2R	10401713	10401846	10401713..10401720,10401787..10401846	CG30197-RA,	FBgn0050197,	CG30197,	1	.
CG7073-RC	GCTACAAAATTTCCAAAAATGATTAGAGACCGCAGAAAGAACAGAACCCAAGGGATGTGAACCCAGCCC	69	+	chr3R	18185746	18185815	18185746..18185815	CG7073-RA,CG7073-RB,CG7073-RD,CG7073-RC,CG7073-RE,	FBgn0038947,	sar1,	1	.
CG14079-RA	GCCATTTGGATCAGCCTCGAAAGCAGCAAACCGTGTGTCATGGGAGGCAATCCAATTGTTGTCCAAGT	68	+	chr3L	19091843	19091911	19091843..19091911	CG14079-RA,	FBgn0036849,	CG14079,	1	.
CG14443-RA	GCCGCTAATTATCGGAAACGCCACAATATCACCTTGACCAGCTGGAATATGCGAAACCTTCCGGAGCCT	69	+	chrX	6528906	6528975	6528906..6528975	CG14443-RB,	FBgn0029880,	CG14443,	1	.
CG18522-RA	CGCGGATTGGGTTTGTGTATCATGGAGTACCAGATCGGTTACTTCGGACAATACCCCGCTACGGTGGC	68	-	chr3R	11359027	11359095	11359027..11359095	CG18522-RA,	FBgn0038347,	CG18522,	1	.
CR33313-RA	CCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAAT	65	+	chr2L	18471447	18471512	18471447..18471512	CR43044-RM,CR43344-RA,	FBgn0263049,	mir-100,CR43344,	1	.
CG13085-RA	TGCAGCCGCAACTACTCAACAGATTGCCATCGCTGAAGCTCATTCACCTAACCACCTTGGGTTCCATG	68	+	chr2L	19429912	19429980	19429912..19429980	CG13085-RA,	FBgn0032780,	CG13085,	1	.
CG31852-RA	CGGTTTTCGGCTTGGGATACCCCAGTTTGCCCATTATGACTGTTGATGAATTCTACCAGCAGCGC	65	+	chr2L	13368646	13368711	13368646..13368711	CG31852-RA,	FBgn0051852,	Tap42,	1	.
CG4259-RA	CTCAAGACGGTCCAGGTCGATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCAA	69	-	chr2L	2128560	2128629	2128560..2128629	CG4259-RA,	FBgn0031389,	CG4259,	1	.
CG11453-RA	TCTCCTGGGAGGTGATCATACCGTCGCTATTCTCTGTACTTCGGGAACTACGGGTCTGCCAAAGGC	66	+	chr3R	15610002	15610068	15610002..15610068	CG11453-RA,	FBgn0038734,	CG11453,	1	.
CG5634-RA	AGAATATTTGCCTCGACTTTCTTCTACTAACCACACACAAAAGTCAAGCTAGCAAGTTGATAATCCGCA	69	-	chr3R	23424590	23424659	23424590..23424659	CG5634-RB,	FBgn0039528,	dsd,	1	.
CG14882-RA	CCTGGCCGGATTTACAAGCGATGACAAAGAGCGTTGTTTCCTGTCCTGTCTGTCCTCTAAACAGGCCAC	69	+	chr3R	12269568	12269637	12269568..12269637	CG14882-RA,	FBgn0038429,	CG14882,	1	.
CG18605-RA	CGTTCCCCGTACGACACTCTAATGGCCTATGAGTGCAGCACACAGTACCGGGCCTTGTTGGATTTTGAT	69	+	chr2R	14865737	14865806	14865737..14865806	CG18605-RA,CG18605-RB,	FBgn0034411,	CG18605,	1	.
CG15628-RA	TGGATGGTCCATTCATACTACGGTGCCATGTTCTCAATGCAAACACGTCCAGACTTCAGGCGCATGGG	68	+	chr2L	4827032	4827100	4827032..4827100	CG15628-RA,	FBgn0031632,	CG15628,	1	.
CG31426-RA	GTGCGCCCCGACGACACTCTGATCGAGCTGTATGGTAACAGAGAGGTTTCGCTAAGCGAGATGTG	65	-	chr3R	24976022	24976087	24976022..24976087	CG31426-RA,	FBgn0041588,	ligatin,	1	.
CG10467-RA	ACCACTCCCGTGAATCTCACCAACCACTCCTATTTCAACCTAGCTGGCCACAAATCTGGAGCCAACG	67	-	chr3L	6086897	6086964	6086897..6086964	CG10467-RA,	FBgn0035679,	CG10467,	1	.
CG11606-RA	CAAAAAGGATCCGGGCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATAAGATCGAGCATCTGC	65	-	chr2L	252058	252123	252058..252123	CG11606-RA,	FBgn0022246,	Rpp30,	1	.
CG30048-RA	TGACCGACATTCAGACTGGTGAGACGCAGGTGTTTTTAGCCCGGAAATGGTTGGAGAAGGGTACACTGT	69	+	chr2R	8286168	8286237	8286168..8286237	CG30048-RA,CG30048-RB,	FBgn0050048,	CG30048,	1	.
CG14506-RA	TCCCCTAGTGCCTAAGCCCAAACCTGTTCTTCGAAAAGTTTCCAAGTCAGATCTCCGCTACGCCGTTCT	69	-	chr3R	25121694	25121763	25121694..25121763	CG14506-RA,	FBgn0039659,	CG14506,	1	.
CG30052-RA	CGGATTCCCCATGTGTCCTCACGATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAG	67	-	chr2R	8577780	8577847	8577780..8577847	CG30052-RA,	FBgn0050052,	Obp49a,	1	.
CG14668-RA	AGCCAGCAATGCAATAAGAGGCTCCAAATTTCACTGATACATCATGCAAGCCGGGAATTCAGCCACTCT	69	-	chr3R	1213289	1213358	1213289..1213358	CG14668-RA,	FBgn0037320,	CG14668,	1	.
CG14659-RA	AGGAGCGTGATATACACAGGATGGAGACCAAGTTGAAGATAAAGAAGGAGGCCAACTTCATTCCACCCA	69	-	chr3R	656756	656825	656756..656825	CG14659-RA,	FBgn0037284,	CG14659,	1	.
CG5261-RA	GCACTTCCGCGACTACATGGAGGATCCTTCCAATATGGTATTGTAAGCGGACAGAAACGACCCATCACA	69	+	chr2L	7429826	7429895	7429826..7429895	CG5261-RB,CG5261-RA,	FBgn0031912,	CG5261,	1	.
CG40294-RA	AGTTAAAGGAGCATGCTCAAATTTAATAGAAACTCTTCCGAACGTTTGCTGATTTTGCAGGTTCAGA	67	-	chr3L	23573547	23573614	23573547..23573614				0	no match
CG3626-RA	GGATCAGGCGGATCTTTTATCGTATGGTGGTGTGACCACGGTCAAAGGCACCGGAATACCAACGG	65	+	chrX	4264293	4264358	4264293..4264358	CG3626-RA,	FBgn0029706,	CG3626,	1	.
CG6559-RA	CAGCAGCAACCAATCCCCAGAATTCAGGCCATTGTTCGCTTATTGAAATTTCAGCCAAAGGAAAACGGA	69	-	chr3L	10292882	10292951	10292882..10292951				0	no match
CG14609-RA	TCGCCAGCCCAAATTACTACGTGCGCAGTATCCCAACTCGTACTTGAAGCTCCCGTTGCTAAAATTCGA	69	+	chr3R	3028546	3028615	3028546..3028615	CG14609-RA,	FBgn0037483,	CG14609,	1	.
CG10777-RB	AAGACGCCACATTCATCCATAAAAACAATTAAAGCGAACACGAAACAAGAGGAAAAGAAGGAGGAACAC	69	-	chrX	7819449	7819518	7819449..7819518	CG10777-RB,	FBgn0029979,	CG10777,	1	.
CG13627-RA	ACCGAAGTACAGTGTGCATGAGGACGAGACCAATGACCAAACCATTCGTGATCCCATTTCGGGTTCGCA	69	+	chr3R	20541627	20541696	20541627..20541696	CG13627-RA,CG13627-RB,	FBgn0039217,	CG13627,	1	.
CG7510-RA	GGCCCAAGTACCTCACGTCAAAGTTGTCAGACTATTATCGAGCGATATGAGGATCAGAACAGAAGGGGA	69	+	chr3L	17621996	17622065	17621996..17622065	CG7510-RA,	FBgn0036741,	CG7510,	1	.
CG32316-RB	CGGCTCCAGCTCCTAATCTGGTTGATGAAGATTCAGCTGCTCGAAATAGGGAACCAGATGCTTCTGCAT	69	+	chr3L	1616900	1616969	1616900..1616969	CG33791-RD,CG33791-RA,CG33791-RB,CG33791-RC,CG33791-RE,CG33791-RF,CG18170-RA,CG18170-RB,	FBgn0035240,FBgn0035239,	CG33791,CG18170,	2	.
CG14343-RA	GGCAACTACGAATCCTGCCTCAGCTTGGATCTCAGCAAGAGTCTGGGCAATGTCATGACCATCAATGCC	69	+	chr2L	1219715	1219784	1219715..1219784	CG5156-RA,	FBgn0259229,	CG42329,	1	.
CG31839-RA	CATCAAGAGCGGCATCAAGGGACGCCAGACCTGCCAGGCCGTCTAACTTAGACTTTCGCACTTTATT	67	-	chr2L	13965065	13965132	13965065..13965132	CG31839-RA,	FBgn0028543,	nimB2,	1	.
CG1461-RA	GGCTCCAAGCTATCCCTTAACACGCACAATCGCATTCGGAACATTGTCGAGTCGCTAAAGATCAAACCG	69	+	chrX	14155863	14155932	14155863..14155932	CG1461-RA,	FBgn0030558,	CG1461,	1	.
CG9075-RB_01435-01673	GAAAGAATTCTAAACAAAAAGTGAGTGAGCAAAACAGCAAACAAGAACTGCGAAATCGATAACCGAGCG	69	+	chr2L	5985200	5985269	5985200..5985269	CG9075-RA,CG9075-RB,CG9075-RE,	FBgn0001942,	eIF-4a,	1	.
CG5712-RA	GCCCCTCCACCAATGTGAACTTCAACGCCAAGTACTCGCATATCCTGCTGATGATCATAACGTTCGGCA	69	+	chr3L	2242152	2242221	2242152..2242221	CG5712-RA,	FBgn0040507,	ACXD,	1	.
CG14956-RA	GCTCGTCCTTCATTCTGGAACATGGTCCACACATGGCCGTCTGTCGAATTTGTTTTTTTGTCAGCAGGA	69	+	chr3L	3157678	3157747	3157678..3157747	CG43365-RF,	FBgn0263108,	BtbVII,	1	.
CG3505-RA	CGGTCACTGCATTTCGATCCGGGAGTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCA	69	+	chr3R	10483417	10483486	10483417..10483486	CG3505-RA,	FBgn0038250,	CG3505,	1	.
CG31116-RC	GCGACCATCTCGATTCGAGGTCCTTCCAGCTCCGGATATTCTCAGTTTACGCCAGATTGCCAACGACG	68	-	chr3R	7625041	7625109	7625041..7625109	CG31116-RA,CG31116-RC,CG31116-RD,CG31116-RF,CG31116-RG,CG31116-RH,	FBgn0051116,	ClC-a,	1	.
CG18432-RA	TGGAGCCAGATCTCCAGATATCCATCAACGAATGCATTGGAGTGCTTTTGGAACGCTCTCTCCCAGAGA	69	+	chr2R	13428243	13428312	13428243..13428312	CG43370-RD,	FBgn0263113,	CG43370,	1	.
CG7588-RA	GGAGAAACTTAGAGGACGTTGGATTTGGCGGGATGTAAGGCGTTGTGATATGCAAATTGTTGCGTGCGA	69	-	chr3L	15653873	15653942	15653873..15653942	CG7588-RA,	FBgn0014850,	Eig71Ej,	1	.
CG32143-RA	ACCATAAGTTCTGGAATAATCAAATCATTTCGGGAACGTTTCCTCAGCAACTCATCTGGGGACTC	65	+	chr3L	14673629	14673694	14673629..14673694	CG42280-RE,	FBgn0259175,	ome,	1	.
CG14517-RA	CCGCAGGTGACCAGAAATGTCTCCCAGCAGGAAGTTTTCGAATGCACCTACTCGGAGATCATTGCCGAA	69	-	chr3R	24859419	24859488	24859419..24859488	CG14517-RA,	FBgn0039625,	beta4GalNAcTB,	1	.
CG1084-RA	CCCGTCTACCGTGCGGGTTGTTTGGAGATATGTTTCACCTTCGCAAGACGAGGAACCAGTAGAGGGTTA	69	+	chr3R	212062	212131	212062..212131	CG1084-RA,	FBgn0037240,	Cont,	1	.
CG14823-RA	ACTGGGGAGCCTGTCTGAGAGGAGATTGGAAAACTGCTTGAAATACAGGGGGATTACTTAAAACCGATT	69	+	chr3L	7061266	7061335	7061266..7061335				0	no match
CG14943-RA	TGCGTCCTCACGCTGGACGGGTACTCCTATGTCATAGGTAAGTGGCTGCTGGTCGGATTTAATGCAATT	69	-	chr2L	11858858	11858927	11858858..11858927				0	no match
CG32276-RB	CGCAGTTTTAAATAGTGCAAAGTGTTAAAGCGTTGTTTTCTAATGCAAAGACGAGTAGAGAAGAAACTA	69	-	chr3L	3197902	3197971	3197902..3197971	CG32276-RA,CG32276-RB,CG32276-RC,	FBgn0047135,	CG32276,	1	.
CG32557-RA	TCTTCAACGGCGTTTCGAACTGTCCGATCAGCTTCAGCATCGATAAGCACGACCTGGTGGTGATCG	66	-	chrX	17748005	17748142	17748005..17748062,17748133..17748142	CG32557-RA,	FBgn0052557,	CG32557,	1	.
CG17903-RA	TGTCCATCAACTTACCCACAACCACTGCAGGATGTCAAACTGTATTATTGTGTTCAGTCACAGTCCGGC	69	+	chr2L	16722382	16722451	16722382..16722451	CG17903-RA,	FBgn0000409,	Cyt-c-p,	1	.
CG15116-RA	GGGAGGGAGCCAACATAGGACACCTCTTTGCCAAGATAGATGTAAAGGGAGCTCAGGCAGATCCGCTG	68	-	chr2R	14942933	14943001	14942933..14943001	CG15116-RA,	FBgn0034415,	CG15116,	1	.
CG3540-RA	CGAGGACTTTGTGGAGGTCTTTGACCAACAGAGCGCAACTATGGTCCAGAAGCTTTACGATCGGGCA	67	-	chrX	2068630	2068697	2068630..2068697	CG3540-RA,	FBgn0023541,	Cyp4d14,	1	.
CG18319-RA	ACGCCCGAGGTCAGGAGGAAAGTCAGAAAGCGGATCCGTCAGTTGTATCGGCGTTTTTCCAGAAAG	66	+	chrX	13892649	13892715	13892649..13892715	CG18319-RA,CG18319-RC,CG18319-RB,	FBgn0000173,	ben,	1	.
CG3671-RA	TCGGAGAGGACCTGGGATCAGTGTAACACAATAACTAAATTCTAATTGAAAAGCGTACCAAAAACGGTT	69	-	chr3R	16877542	16877611	16877542..16877611	CG3671-RB,CG3671-RD,CG3671-RE,	FBgn0011672,	Mvl,	1	.
CG31543-RA	GCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCAGGAGCCTTCCAGGATGGCCAAGTG	65	+	chr3R	1092569	1092634	1092569..1092634	CG31543-RC,CG31543-RA,CG31543-RB,	FBgn0086689,	Hph,	1	.
CG30078-RA	CCGGGATGAGCAAGTTTAGCTTTGTTCCCTGTGAGTCTATCGTGTCTGATGCTTTGTGAGCCGAGCAGC	69	-	chr2R	11155271	11155340	11155271..11155340	CG34123-RB,	FBgn0083959,	trpm,	1	.
CG14994-RB	AACGTGTTGCTAGATGTTCCTTTACGATTTCTCATTCTGTTATCCGTTGACCGTTATTCGTTAAGCGTC	69	-	chr3L	4075088	4075157	4075088..4075157	CG14994-RB,CG14994-RA,CG14994-RC,	FBgn0004516,	Gad1,	1	.
CG6986-RB	TTGGTGCCCAACAAATTGTCGAATATGGTGGCATAGTCCTTAGTTAGCATATCCTGCGAGACTGCGGCC	69	+	chrX	4622543	4622612	4622543..4622612	CG6986-RA,CG6986-RB,CG6986-RC,CG6986-RD,	FBgn0029723,	Proc-R,	1	.
CG10846-RB	CCGCCATGCAGGACGAGATGATCAACTACACTAAGTCATTCTACGAGCATTTCGTGAGGGCTCCA	65	+	chr2L	15006459	15006524	15006459..15006524	CG10846-RA,	FBgn0040228,	dyn-p25,	1	.
CG4743-RA	GCGGGAGATTCCATTTAGTCTGATACAGTTTCCGCTCTGGGAGTACTTTAAGCTGCAATGGACTCCCCT	69	-	chr3R	21505506	21505575	21505506..21505575	CG4743-RA,CG4743-RB,	FBgn0039357,	CG4743,	1	.
CG10922-RA	TCTTTTGATCGCAGTAGACCAAGCTTAATTGTTACTCGGTAGATCTAGTTGACCTAGCTTTAAGGCCTT	69	-	chr2L	20348583	20348652	20348583..20348652	CG10922-RA,	FBgn0011638,	La,	1	.
CG10822-RA	CGGTGAAAACCTCGATGGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGGAGA	69	+	chr2R	15839129	15839198	15839129..15839198	CG10822-RA,	FBgn0034478,	CG10822,	1	.
CG7497-RA	TCGAACGCAATTATCATACCGGCAAAATGGAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCAC	68	+	chr3L	17626813	17626881	17626813..17626881	CG7497-RB,	FBgn0036742,	CG7497,	1	.
CG14715-RA	GAATAGGGCCACAAATAGGCATTCCATGCTACACCCAAAGTTTACTTTCAACTAAAGTCATAAACATTT	69	+	chr3R	7500486	7500555	7500486..7500555	CG14715-RA,	FBgn0037930,	CG14715,	1	.
CG14981-RB	GCCCCCAAAAAAAGGACGTCCTCATCAATCGAAACGAGCCGTTGCAAAACTTCAGATAGGTGTTAGCAT	69	-	chr3L	3907933	3908002	3907933..3908002	CG14981-RB,CG14981-RA,	FBgn0035473,	mge,	1	.
CG1169-RA	TTGCCAAGCCCAAGATTGTCAACTACGAGGTGGTGCACTATCCCCATCACGTGGATCATGTGGTG	65	+	chr3R	2156974	2157039	2156974..2157039	CG1169-RA,	FBgn0037428,	Osi18,	1	.
CG13549-RA	GGGCCTTCACTTATTCAGCATGGAGTGTGGAAAGTCACGCATGGTGATGTATGGTGCAAAGGGCAGAGA	69	-	chr2R	19131875	19131944	19131875..19131944	CG13549-RA,CG13549-RB,	FBgn0040063,	yip3,	1	.
CG3071-RA	GCGCCAGTTTAACCACAAGAAGGCTTTGGACGACGTGATGAATGCGCAGAAGATGCAATACCAGCCG	67	+	chrX	2158117	2158184	2158117..2158184	CG3071-RA,	FBgn0023527,	CG3071,	1	.
CG4186-RA	CCGAAAGGAGAGCCAAGGGAATAGCTCCTTATTTGCCGCCCTTAGAAGAACGCGATGGGATTAAAGCAG	69	+	chr3L	20763006	20763075	20763006..20763075	CG4186-RA,	FBgn0040634,	CG4186,	1	.
CG31798-RA	AGAGATTAACTTTGATCGCGAGACCATAAGGCAAGGAATCACCCCCCTGACCTACGATGAGGCGCG	66	+	chr2L	19394305	19394371	19394305..19394371	CG31798-RA,	FBgn0051798,	CG31798,	1	.
CG7555-RA	AAAACTCACACACTACACATACACCTTATACAAGCAGAGAAAAAAGGATCCCAATAAAGCTGCGCATGG	69	+	chr3L	17539007	17539076	17539007..17539076	CG42279-RE,CG42279-RF,CG42279-RG,CG42279-RI,CG42279-RH,CG42279-RJ,CG42279-RK,	FBgn0259174,	Nedd4,	1	.
CG17622-RA	CACTGATGGTGAAATCATTGAATTTGCCCAAAGACGATAGCAATTTGGTCTATCGCCGCAAATCC	65	+	chr3R	18483916	18483981	18483916..18483981	CG42686-RB,	FBgn0261572,	CG42686,	1	.
CG31702-RA	CAGATCGAAAAATCTGGCCAGCATCGGTACCAAGTCCTTAGTTCTACACGCGGGGTCCATGTGCCT	66	+	chr2L	22072164	22072230	22072164..22072230	CG31702-RA,	FBgn0051702,	CG31702,	1	.
CG17327-RA	GAGCCAGAAGTATGCCCACGTCAAGTAGCATCCTGCAGAAGTTCCTCAGCAACGGTTTGGCCTTC	65	-	chr3R	8823009	8823074	8823009..8823074	CG17327-RA,	FBgn0038107,	CG17327,	1	.
CG10999-RB	CCGCGGCGTTCAATATGAAGTCGAAGGGCAATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAG	65	+	chr3R	1644133	1644198	1644133..1644198	CG42675-RB,CG42675-RC,CG42675-RD,CG42675-RE,CG42675-RF,	FBgn0261561,	CG42675,	1	.
CG31709-RA	CAGTCGGAATGGTCAGAACCAACAGGTCGAAGACGGCAATGATCGGAATCTTCAACCGGCAGCTC	65	-	chr2L	9578905	9578970	9578905..9578970	CG31709-RA,	FBgn0051709,	CG31709,	1	.
CG14563-RA	CGGATACCCCTACAGCTACGGCGGATATCCGTACTACTCGTATCCCGGCTACAACCCGTACTCGATGTA	69	-	chr3L	21835219	21835288	21835219..21835288	CG14563-RA,	FBgn0037139,	CG14563,	1	.
CG6512-RA	AGGCCACCACTAGTCTGCTGACCAAGCACAAGGAGAATGTTCAAAAAGTGGCGGAAAGACTGCTCCAAA	69	-	chr3L	17232440	17232509	17232440..17232509	CG6512-RB,CG6512-RA,	FBgn0036702,	CG6512,	1	.
CG16993-RA	AGAAATCCAAGCACTATCGCAGGCATCTATCGGAATCCTCGAGAGCACAGACGAACTCGAACGGGCAC	68	+	chr3L	20362732	20362800	20362732..20362800	CG16993-RA,	FBgn0001259,	in,	1	.
CG17367-RA	TTTCCGGAGCAAGTCTATTTCCATTTGGATCCCACAACGCTAACAGTGCACGGATCACCGCCACC	65	+	chr3R	21718254	21718319	21718254..21718319	CG17367-RC,CG17367-RB,CG17367-RA,	FBgn0028717,	Lnk,	1	.
CG4854-RA	AGGCTGCTTCCTTTACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAACCACA	69	+	chr3R	15854454	15854523	15854454..15854523	CG4854-RA,	FBgn0038766,	CG4854,	1	.
CG13524-RA	CCTGTCGAAGCCCCTCTTCAAGCAAATGTCCAAGCAATTCTGCGATCCGAAGTCTAGTGTCGTCCTGG	68	-	chr2R	18593568	18593636	18593568..18593636	CG13524-RA,	FBgn0034769,	Obp58c,	1	.
CG32332-RA	CCCATCGACCGGACTTGACGCTTACCCTTTCGGAACACATCCTTTGGCATTTTGGAAGCGACTCTTTGA	69	+	chr3L	1255767	1255836	1255767..1255836	CG9130-RA,CG9130-RB,CG9133-RC,CG9133-RB,CG9133-RD,	FBgn0035197,FBgn0035198,	CG9130,CG9133,	2	.
CG4995-RB	CCAAAACGCGACTCCAATTGTCCACGCAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTG	67	+	chr2L	10324162	10324229	10324162..10324229	CG4995-RA,CG4995-RC,CG4995-RB,	FBgn0032219,	CG4995,	1	.
CG6496-RA	TTTTGGTGCGTCGAAGGAAAATGAAAATCCGCAGATAAAAGCCGGTGTAGTCATCTAATAGAGAGAAAA	69	-	chr3R	22281319	22281388	22281319..22281388	CG6496-RA,	FBgn0023178,	Pdf,	1	.
CG5361-RA	AGTGGCCAGTGTTTCCCGAGCTCTTTGGTTGGGAATTCCTTTGGATAAAGTCCCAGACAATCAGCAGGA	69	-	chr3R	5900582	5900651	5900582..5900651	CG5361-RA,	FBgn0037786,	CG5361,	1	.
CG11425-RA	TCCACTGGCTGGGACTGTACCTTCCACTGATCAGTCTGGTCGTCCTTGAAAGCTTTCTCAGCCAC	65	+	chr3L	22468119	22468184	22468119..22468184	CG11425-RA,	FBgn0037167,	CG11425,	1	.
CG7952-RB	CTCCTCTGCAGAGGTCCTGGATCTTTCCCGTCGATGTGACAGCGTAGAGACACCCAGGAAGACTC	65	-	chrX	2322467	2322532	2322467..2322532	CG7952-RB,	FBgn0001150,	gt,	1	.
CG1793-RA	ATGAGCTCAGTAACATTAGTGCGAAACCGCTGAAATCGTTTGATTCAACAATGAAGCTGCCATCACTTG	69	-	chr4	799622	799691	799622..799691	CG1793-RA,CG1793-RB,	FBgn0039923,	MED26,	1	.
CG31683-RA	CCCTGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAGCGCATGATCAGC	65	.	.	.	.	.	CG31683-RA,CG18858-RA,	FBgn0051683,FBgn0042175,	CG31683,CG18858,	2	.
CG10913-RA	AGTTGACCGTGGAAGAGGTCCATGTCAAGTTCCCCAAGTTTAAGGTGGACTACTCCCTGGAATTGGCCG	69	+	chr2R	14014719	14014788	14014719..14014788	CG10913-RA,	FBgn0028983,	Spn6,	1	.
CG10810-RA	CAGAAATCATTTACCAAGCTCCGTGAGAACCTTTTCCAATATGATGCAGATCAAGTACTTGTTCGCCCT	69	+	chr3L	3369578	3369647	3369578..3369647	CG10810-RA,	FBgn0010381,	Drs,	1	.
CG7108-RA	GCAGACTACTGCTGTGCATGCCTACAATCCCGAAGTCCTGCAGGATATGTTGCCCGTGTATTACAGGC	68	+	chr3L	8336118	8336186	8336118..8336186	CG7108-RA,	FBgn0011762,	DNApol-alpha50,	1	.
CG1835-RA	CGCCCAAAGGAATCGGAAGTCTGATGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCG	69	+	chrX	20540182	20540251	20540182..20540251	CG1835-RA,CG1835-RB,	FBgn0031127,	CG1835,	1	.
CG6996-RA	TGCATCCGCGATTTTCCGTGCTCGAATAAAATGGACCCGGATAGCTATTGCAACATCTTGCCGGATGGG	69	+	chr3L	20201350	20201419	20201350..20201419	CG6996-RB,	FBgn0036950,	CG6996,	1	.
CG11268-RA	GCTGGCTGTTCTTCCACGATCGCATCTACGTCGAGGAGTACTCCCTGCTCAACTTCTTCCAGTCGG	66	+	chr3L	13012441	13012507	13012441..13012507	CG11268-RA,	FBgn0036336,	ste14,	1	.
CG32376-RA	CTGGCCATGATGAAACTGAAATCCCCGGTCTACTTTGGCAAATGTGTTAGGCCTGTGAAGCTACCCTCT	69	-	chr3L	7535038	7535107	7535038..7535107	CG32376-RA,	FBgn0052376,	CG32376,	1	.
CG17958-RA	GCAAGACCTTCAACCATCACACGCTCATTCACAAGGAGAACCGCCCAAGACACTACTGCTCCGTCTG	67	+	chr3R	25870158	25870225	25870158..25870225	CG17958-RA,	FBgn0003512,	Sry-delta,	1	.
CG33264-RB	AGCGGCCCAACTTCCCAGATACACGTGGAATGGCAGACGATCCTTGGAAGTTAAACGCAACTTGG	65	-	chr3L	12958730	12958795	12958730..12958795	CG33264-RB,	FBgn0041622,	Or69a,	1	.
CG5757-RA	CGCAGTTCCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCAAGGATCTTCCGGATGAGGTG	69	-	chr2R	13981914	13981983	13981914..13981983	CG5757-RA,	FBgn0034299,	CG5757,	1	.
CG4320-RA	GCCGCAGATTGCAGTGGCCTACAGGGAGAAGGTTCTGGTGTACGACTTTCAGTACAATTCGGTACGCAC	69	-	chrX	5979908	5979977	5979908..5979977	CG4320-RA,	FBgn0029840,	raptor,	1	.
CG31647-RA	CACCACCCAGCGAGTAACGAGTAACCGTGGCGTATCATCTTACCTTTTGGGCCAACCTTGAACTGGC	67	-	chr2L	5436051	5436118	5436051..5436118	CG31647-RB,	FBgn0051647,	CG31647,	1	.
CG17352-RC	CGGCAGAGAGTCCTGTGACAACCGACCAGAACCAATTGCAGAAACAAAGTCCGGAGCAGACAATCAGC	68	-	chr3L	8346234	8346302	8346234..8346302	CG17352-RC,CG17352-RB,CG17352-RA,CG17352-RD,	FBgn0035880,	CG17352,	1	.
CG4768-RA	ATTATGCAAACGACAAATGAAGCTGTGTAAATAACAACAAAATAAGAGACACCCCCAGAAATCCGAAGC	69	+	chrX	16689961	16690030	16689961..16690030	CG4768-RA,CG4768-RB,	FBgn0030790,	CG4768,	1	.
CG30170-RA	CGAGGTAAGCTGTCGATGAACAATCTCAACCAGATGTCCTGCAATTGGCACATGGTTAAGGCGGCCC	67	-	chr2R	19742249	19742316	19742249..19742316	CG30170-RA,	FBgn0004581,	bgcn,	1	.
CG7067-RA	ACGACATCTACGCCTTAACAGCCTACAACCTTCGTAGCAAAGAACCAACCCAGGATCGACCATTTGCCA	69	+	chr3L	204748	204817	204748..204817	CG7067-RA,	FBgn0024945,	NitFhit,	1	.
CG31280-RA	CATGGGCAAGCCGTACGATGGTCTTGGATCGCTGATCAATCTGGTTTTCCTCTCCATCTCGCTGG	65	+	chr3R	18878279	18878344	18878279..18878344	CG31280-RA,	FBgn0041225,	Gr94a,	1	.
CG33138-RA	CTATCGCTTCGACGGAGTGACCTCTATGCTATACCATTCCCGTGGCATTGGGGAGGGCTTCAGCG	65	+	chr2R	9061049	9061114	9061049..9061114	CG33138-RA,	FBgn0053138,	CG33138,	1	.
CG12926-RA	GCAGGCTGATGGTCCTCGCATCCACATCTCCCGCTACGGTCAATACGACTCGAAGAAGTACTCCATTG	68	-	chr2R	5496447	5496515	5496447..5496515	CG12926-RA,	FBgn0033437,	CG12926,	1	.
CG33160-RA	ATATCTCGTACAGGTCACCACATCAGAGGAGCTATGTGGCGGATCACTGGTTAAGCCGCGTTGGG	65	-	chr3L	3206161	3206226	3206161..3206226	CG33160-RA,	FBgn0053160,	CG33160,	1	.
CG6957-RA	TGCCCACGGGATCTACGCCATTGGGAATGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTAT	69	+	chr2L	5547989	5548058	5547989..5548058	CG6957-RA,CG6957-RB,CG6957-RC,CG6957-RD,CG6957-RE,CG6957-RF,CG6957-RG,	FBgn0031717,	Oscillin,	1	.
CG3566-RC	ATCAACCCCTCTAGAAATGCCTGCAAAACCGTGTAATCCTAGCTAGCTAACCAAAGTGCACCCAGTTTT	69	-	chrX	6169299	6169368	6169299..6169368	CG3566-RC,CG3566-RD,	FBgn0029854,	CG3566,	1	.
CG18507-RB	GGTCAACCTGTGCTTCATGTACTTTGATGCCACACAGTGCGTTAATTTCCTGAACGAGTTCCTGGAGCA	69	+	chr2L	13669201	13669270	13669201..13669270	CG18507-RA,CG18507-RB,	FBgn0028527,	CG18507,	1	.
CG10946-RA	CGCCAGTCGATGCATCATCCCGCATCCTGTTACCGTATCCCGTAAGTCGGCATATGAAGACACTCCG	67	-	chrX	7801379	7801446	7801379..7801446	CG10946-RA,CG10946-RB,	FBgn0029974,	dpr14,	1	.
CG11574-RA	TGATGGAGACAATTCCTCCACAACTTCGTTGACCTCTATGGAGGCCCAGTTTTCTCAGGCTCCCAGC	67	-	chr3R	27626037	27626104	27626037..27626104	CG42233-RB,	FBgn0250755,	CG42233,	1	.
CG7639-RA	AGGGCCAATGATCTACAACTGAAGTTCTGGAAACCCTTCTTCCACACACGCTTCAAGGAAAATCGGCCT	69	-	chr2R	10876441	10876510	10876441..10876510	CG7639-RB,	FBgn0033989,	CG7639,	1	.
CG15011-RA	CCAAATGTCACCATGCCATTAAGCATCGTTGTCACAAGGGTGACTGTCCTCCATGTGGCCAAGTGTGC	68	-	chr3L	4257180	4257248	4257180..4257248	CG15011-RA,	FBgn0035518,	CG15011,	1	.
CG5621-RA	AGCTCGAAATCGAAAGGCTCTTCCATGTCAGTGGATTCATTGCCCGAGGATACCTCAGAAGCTGACGCA	69	+	chr3R	16733759	16733828	16733759..16733828	CG5621-RB,CG5621-RA,	FBgn0038840,	CG5621,	1	.
CG15085-RA	CCCGAGCAATGGCCCTGCTATCATAGGGATTACCCATATATCTCACGGATACCCAGTCCTCTCTATGGT	69	-	chr2R	14555290	14555359	14555290..14555359	CG15085-RA,	FBgn0023214,	edl,	1	.
CG30038-RA	AAGCTAGGACACACAGAGTACCATTTTCCCACACTGTTTCACCTTTTTGTGCAAATTACTCCAATGTAA	69	-	chr2R	7783521	7783590	7783521..7783590	CG42572-RC,CG42572-RD,	FBgn0260959,	MCPH1,	1	.
CG7630-RA	AGCGTTCCCTTACGTGTAAATTAATCCAACATTTGTGTTAAATAAGCTTAAAGTGGCGACATAGTAAAT	69	+	chr3L	17419298	17419367	17419298..17419367	CG7630-RA,	FBgn0040793,	CG7630,	1	.
CG5996-RA	CAGCACAATCCAGCCCAATTGGTCAAACCAAGACGACATGAGCAGACGCAGAGTCAACACGATTCGGT	68	-	chr2L	16664997	16665065	16664997..16665065	CG5996-RA,CG5996-RB,	FBgn0032593,	trpgamma,	1	.
CR32864-RA	GACTGGAAGGTTGGCAGCTTCTGTAATCACGCTTCTGTGAGGTCTGATTGTGGGATGGCCTGAGG	65	.	.	.	.	.	CR32864-RA,CR42652-RA,	FBgn0000003,FBgn0261504,	7SLRNA:CR32864,7SLRNA:CR42652,	2	.
CR32205-RA	GACTGCTTTGGACTACACTGCTCACGTGGTTCCTCTGCTTCACTCCGGTCTGACTGTCGTGGTAG	65	-	chr3L	19416312	19416377	19416312..19416377	CR32205-RA,	FBgn0052205,	CR32205,	1	.
CG10958-RA	TGGCCAACCGGATGAAAAGGAGCATAGGTCGACAGGGGATACATTTCTACCCAAGAGCGAGGTGG	65	+	chrX	8028361	8028426	8028361..8028426	CG10958-RA,	FBgn0030004,	CG10958,	1	.
CG17565-RA	GTGCCATAGACCGACCGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTC	65	+	chr3R	12259391	12259456	12259391..12259456	CG17565-RA,	FBgn0038424,	CG17565,	1	.
CG33221-RA	GCTCTTTCTGCCTTAAGCCTTTCTCTTTGCCTGTCGTCGATCTGCCGGAGTTCGTGTGTGTGGAGA	66	.	.	.	.	.	CR33221-RB,	FBgn0053221,	CR33221,	1	.
CG4174-RA	GCCAAAGCTAAAACATTTGCAATCGAATCCTGCCAAACTCACAAAACCGAAGAAAGTGTTCCAGCTGCA	69	-	chr3L	18594153	18594222	18594153..18594222	CG13380-RB,CG4174-RA,CG4174-RB,CG4174-RC,	FBgn0036799,FBgn0036793,	CG13380,CG4174,	2	.
CG10861-RA	TGCCCCGGATCAGATAATCAAGAACTTGTACGAGTGCCATGGAACCAATGGGAAACTGGTGCTCTACTA	69	+	chr3L	12130481	12130550	12130481..12130550	CG10861-RB,	FBgn0036255,	Atg12,	1	.
CG6404-RA	TCTGGTTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCCTTAATCACCAGTGCCACGTTGT	69	-	chr3L	10878118	10878187	10878118..10878187	CG6404-RB,CG6404-RA,	FBgn0027615,	CG6404,	1	.
CG2967-RA	GCCCACGACATGGAATCTGCGTTACAATAGCGACACTTGCGATAGTGGAAGTATCTCGAGCACGGATCA	69	+	chrX	10122976	10123045	10122976..10123045	CG34408-RC,CG34408-RD,CG34408-RA,CG34408-RB,	FBgn0085437,	CG34408,	1	.
CG13599-RA	CGATCTTGGCGTGCGGAATCTGGATAAATCTGGGGAAGACGTTAGCCAGACCAACGAAGAGCATGACGT	69	+	chr3R	19758208	19758277	19758208..19758277	CG13599-RA,	FBgn0039128,	CG13599,	1	.
CG4815-RA	GGACTGGCAGGTTCCATCCCAGGATTTATAATGGCATAAAGACGACTGTCGAATCTCTTGGAGGAGTGG	69	-	chr3R	23816137	23816206	23816137..23816206	CG4815-RA,	FBgn0039568,	CG4815,	1	.
CG6450-RC	AGCCCGTACTCCTACGACTAGCACTTTAATAACAAATCATTACACTAACTTCGATCCTGGCCTTCCTTG	69	-	chrX	3849798	3849867	3849798..3849867	CG6450-RC,	FBgn0029688,	lva,	1	.
CG18023-RA	GCGGATTGTGGAGTTTGCGAAACGCGTACCTGGCTTCTGTGATTTCACCCAAGATGACCAGCTTATACT	69	+	chr3L	21256897	21256966	21256897..21256966	CG18023-RA,CG18023-RB,CG18023-RC,CG18023-RD,CG18023-RE,	FBgn0004865,	Eip78C,	1	.
CG2611-RA	TCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACGTGCTCTTCTGCATAATGCTCAACC	66	+	chr2L	20650618	20650684	20650618..20650684	CG2611-RA,	FBgn0032871,	CG2611,	1	.
CG3223-RA	CGCCGCCGAAATCAACACGAAGCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGT	69	+	chr3R	3835545	3835614	3835545..3835614	CG3223-RA,	FBgn0037538,	CG3223,	1	.
CG33008-RC	TGACGGCCATGGAAAGATGATTGGAAGAGCAAAAGCCTAGACACTAGCAGCACCCTTGACCTCCG	65	-	chr2R	16439002	16439067	16439002..16439067	CG18065-RA,CG13430-RA,CG13430-RB,	FBgn0034519,FBgn0034518,	CG18065,CG13430,	2	.
CG14904-RA	AGGCAGATCTCAACCCTCCCGACTTGATGATCCGTCGTTGTTAGTTGAGTGTTGTTTTCTCTCCAAGAA	69	-	chr3R	12400620	12400689	12400620..12400689	CG14904-RA,	FBgn0020907,	Scp2,	1	.
CG2950-RA	GGTGAGGTCATTCGTAATTCGGGCAAGTTCCCCAAACCGACCAAGATTCCTGGCAAGACGTACTGCAA	68	-	chr2L	4845291	4845359	4845291..4845359	CG2950-RB,CG2950-RA,CG2950-RC,CG2950-RD,	FBgn0031637,	CG2950,	1	.
CG3497-RA	CAACCCCTCGTGACGTAAACCAAAATGTGTCCCCTTCTCTCTAAAGTGAATCATACTTTACACATGTAT	69	+	chr2L	15042719	15042788	15042719..15042788	CG3497-RA,	FBgn0004837,	Su(H),	1	.
CG3731-RA	AGGATATGCTCTTCAACGTGCAGACCGAGTGGATGCGTCTGTGCACCATGGTTACCGAGGCTGAG	65	+	chr3R	10717670	10717735	10717670..10717735	CG3731-RA,CG3731-RB,	FBgn0038271,	CG3731,	1	.
CG7036-RB	AGCTCAGGTAGCAATAACGACAACAACGGGAAGACTGGAGCAGCTAGTAGTGCAGGTAAGAGGCGAGGA	69	-	chr3L	189655	189724	189655..189724	CG7036-RB,CG7036-RC,CG7036-RD,	FBgn0035106,	rno,	1	.
CG2682-RA	CCCGAATCAAAGTTTCCGAGCCTATCAGTATCGCGAGCACAACCTTCAGCACTCCCACCATCAAACGC	68	+	chr2R	1182077	1182145	1182077..1182145	CG2682-RA,CG2682-RC,	FBgn0033015,	d4,	1	.
CG11125-RA	TACGAACAGCTGGTTAATGAACTGAACCACATGCCCATGACTGCACAGACGTTGAGGGTGCGCAA	65	+	chr2R	3336500	3336565	3336500..3336565	CG11125-RA,	FBgn0033174,	CG11125,	1	.
CG31093-RA	GGCCAACTGAGTGAAAGGGGTTTTGCATGCGATTAGACCAGCTGATGGGACGGGTGATGTTAGCC	65	-	chr3R	21615620	21615685	21615620..21615685	CG31093-RA,	FBgn0051093,	CG31093,	1	.
CG7220-RB	TAGCAGCCATATCCCCGATCGCTCTCATTGTCACCAGTCCTGCACTCTGTAATCTACCCACATTGCCC	68	+	chr2R	6625516	6625584	6625516..6625584	CG7220-RB,CG7220-RD,CG7220-RA,CG7220-RC,CG7220-RE,	FBgn0033544,	CG7220,	1	.
CG1391-RB	TGGATGGCAGTGACGCAATTTCGATGCTACCCCGCGATATGTCGCTGTTCGAATCCTGATTTGCATGC	68	+	chrX	21228480	21228548	21228480..21228548	CG1391-RA,CG1391-RC,CG1391-RD,CG1391-RB,CG1391-RE,	FBgn0003464,	sol,	1	.
CG1367-RA	TGGCTAAAGAAAATTGGCAAGAAAATCGAACGTGTTGGTCAGCACACTCGCGACGCCACAATCCAGGG	68	+	chr3R	26038031	26038157	26038031..26038058,26038116..26038157	CG1367-RA,	FBgn0000277,	CecA2,	1	.
CG4291-RA	CCGTGGTTTCCGCCTCGAGTGAACCAGAACCTCCAGTCAAGAAGTTCAAGGAAAAGACGATTGGCGG	67	-	chr2L	851533	851600	851533..851600	CG4291-RA,	FBgn0031287,	CG4291,	1	.
CG4330-RA	GCTGGCAACCAGATGAATCACATAGCGCTCAGTCCACGATATGCAGGCACCATGTATGGCATCACCAAT	69	+	chrX	13028187	13028256	13028187..13028256	CG4330-RA,	FBgn0030452,	CG4330,	1	.
CG17803-RA	CGGAAGCAGACCCTTCCAGTGCAAGATTTGCCAGATGAAATTCGCTGACCCATCTGCCATGAAACGACA	69	-	chr3R	13625143	13625212	13625143..13625212	CG17803-RA,	FBgn0038547,	CG17803,	1	.
CG11294-RA	GATCCGATTCCGAGGAGATTGATCTCACCTCCGGCGCCTGTATCGATTTCTCCCAGAGCAGCAAG	65	-	chrX	8586281	8586346	8586281..8586346	CG11294-RA,	FBgn0030058,	CG11294,	1	.
CG3291-RA	ACGATCCAAGATTTTGTGCCCATACAGGCGTACCGTCCCAAGAAATTAAATCGCGTCCAACCAGCC	66	-	chrX	19380593	19380659	19380593..19380659	CG3291-RA,CG3291-RB,	FBgn0020261,	pcm,	1	.
CG17777-RA	GAAGAAGACGGAGAAGAGAGGCATCTACGGGTTCGGCCACGGCTATGGCGGCTACGGCGGATACG	65	+	chrX	2081281	2081346	2081281..2081346	CG17777-RB,	FBgn0040900,	CG17777,	1	.
CG31256-RA	CTACGATCTGCCCGGACCCAGTAGGAAACGTCCCAAACTTGAAGTGGGTCTGCCAGTCAGCAAAG	65	-	chr3R	13201616	13201681	13201616..13201681	CG31256-RA,CG31256-RB,	FBgn0038499,	Brf,	1	.
CG14329-RA	ACAAGTGCAGCCAGTTTACCAAACGGGAGGCTATCGGTCAAGGGATCAACGAAGCAGCTACGGATAAGT	69	+	chr3R	13436055	13436124	13436055..13436124	CG14329-RA,	FBgn0038525,	CG14329,	1	.
CG1794-RA	GTGGCGCATTGGAACTTCTGGTCTGTATAATGGCTATCCCACGGAGATCAGGAGACATTGGTCCGCTCT	69	-	chr2R	5500260	5500329	5500260..5500329	CG1794-RB,	FBgn0033438,	Mmp2,	1	.
CG3652-RA	TCTCGTGGTTGGTTCTTTCCCACAATTAGTCCAATCTATGACGCCTCGTTTAGTGATTAGTTCGT	65	-	chr2L	4392839	4392904	4392839..4392904	CG3652-RA,	FBgn0031600,	CG3652,	1	.
CG5377-RA	TGAAGAGCCCTTGAGAAGCAGCTAAGTTTGTTGCCATACTCCAAAATCCCCGTTAGATCCCGCTTACGT	69	-	chr3R	18293705	18293774	18293705..18293774	CG5377-RA,	FBgn0038974,	CG5377,	1	.
CG17952-RB	TACCGTCTCTCCCTGGTGACCACCTTGATCTATGCCACCTGCTACATCTACCAGACGCTCGTGTG	65	+	chr2R	17610418	17610483	17610418..17610483	CG17952-RB,CG17952-RA,CG17952-RC,	FBgn0034657,	LBR,	1	.
CG18374-RA	TCAACGCACGGATTACTAACGACTGTTGGCTACCAACTAGGACGGAAGGCAGTCCCATTTTACGCCCTT	69	-	chr3L	202905	202974	202905..202974	CG18374-RA,CG18374-RB,	FBgn0025592,	Gyk,	1	.
CG13463-RA	AGGGTCCACAGTCCAGTGCAGAGGAATCCCACGAGATTTCCCAAGAGTTTTCTCATGAGATTTCCCAGA	69	+	chr3L	15048222	15048291	15048222..15048291	CG13463-RA,	FBgn0036470,	CG13463,	1	.
CG5722-RA	TGGCCCTAGAGTCGGCTAGAAAGATATCCGCGAATATTACGCAAATGTTGCAGGGCAGACTAATGTCAA	69	-	chr2L	10214682	10214751	10214682..10214751	CG5722-RA,CG5722-RB,CG5722-RC,CG5722-RD,	FBgn0024320,	Npc1a,	1	.
CG31388-RA	GCACCAAGTGCAAGAGCCAATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTC	65	+	chr3R	7064839	7064904	7064839..7064904	CG31388-RA,CG31388-RB,	FBgn0051388,	CG31388,	1	.
CG9820-RA	GTGTCGAATCTTCTCGTGACCCTGTGCTACCCCGTTCACCTGGGAATATCCCTCTTTCGCAACCG	65	-	chr2R	19328400	19328465	19328400..19328465	CG9820-RA,	FBgn0026384,	Or59a,	1	.
CG40168-RA	GCCTCCGGCCATCAACAGTTTCGCCATCAAGGTGAATCTACACGAACTTAAAGGCTCTGAGCTCTGA	67	+	chr2L	20226769	20226836	20226769..20226836				0	no match
CG6950-RA	GCAAGGAGCTAAATCCCCTCAGCGACATACTGATTACCTCAGGCGCCTATGAGGCTCTCTACTCCACCA	69	-	chr3R	7647117	7647186	7647117..7647186	CG6950-RC,CG6950-RA,CG6950-RB,CG6950-RD,	FBgn0037955,	CG6950,	1	.
CG18537-RA	CGACTACCTCAACTCCTACTACAAGGATGTGATAATGAAGAACTTTGCCCCCTGTTCCAATGTGCCGCA	69	+	chr2R	14183879	14183948	14183879..14183948	CG18537-RA,	FBgn0034323,	CG18537,	1	.
CG4220-RC	TGGTTGCTACTAAACGCAAACGGTAATTTTAATTTAATTTATTCTATTCAAGCGATTACGATTACGGAA	69	-	chr2L	14390809	14390878	14390809..14390878	CG4220-RC,	FBgn0004858,	elB,	1	.
CG3238-RA	AGTGCATCGGCAATCGGATCCGGAGTTTGTAAAGATTCTGAACCACCTCCGAATTGGCCATGTGAACGA	69	-	chr2L	3468622	3468691	3468622..3468691	CG3238-RA,	FBgn0031540,	CG3238,	1	.
CG33464-RA	CTCTATCGCGGAGACTCGGAGAGCTCCAAGTACGAGCCCATACGCAACCTGACGCACAAGTTTTC	65	-	chr2R	11759795	11759860	11759795..11759860	CG33464-RA,	FBgn0053464,	CG33464,	1	.
CG5326-RA	TAGTATTTTGTTAGTTCGAGGAAAGCGGCCCCATTTGTACTTGTTTGGATCAGTCGCCATTGCAGAGGG	69	-	chr3R	18358161	18358230	18358161..18358230	CG5326-RA,	FBgn0038983,	CG5326,	1	.
CG17876-RA	AGCCGAGCAATTACTTGAGATTATTCATTTTTAAAATATATATTATGCGATTATAACACAGAAAAAGGA	69	+	chr2R	13013817	13013886	13013817..13013886	CG17876-RA,	FBgn0000078,	Amy-d,	1	.
CG4778-RA	CGCCGATGGCATGGTCTTCAATGACTACTCACCCATCGAGGAGAAGTGCGATCTGCCCTACAACATTGA	69	+	chr2L	10037187	10037256	10037187..10037256	CG4778-RA,	FBgn0027600,	obst-B,	1	.
CG10479-RA	GCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCAACACCATGAGCAAACGCCGT	66	-	chr3L	5961393	5961459	5961393..5961459	CG10479-RA,	FBgn0035656,	CG10479,	1	.
CG12192-RA	GGAAGGGGATGGAGAGAAGTCTCCCGATCTCAACGAGGAATCAGAGCCAGAAATGATGGCCGACGAG	67	+	chr2R	19031421	19031488	19031421..19031488	CG12192-RA,	FBgn0034827,	Klp59D,	1	.
CG7498-RA	AGCACGCTGAGCAAGGTGTTTCGCTTCGTGGTGAACTTTTTCATCCTCTAAGCGACTGGATTGAAGCCA	69	-	chr3L	8148005	8148074	8148005..8148074	CG42445-RA,	FBgn0259916,	CG42445,	1	.
CG5771-RA	GGAAAGAAAGCAAGCAAAACTAAACACTCCAAATTCAGTTTAAGCTGTAGAACTATAATTTATATAAAT	69	+	chr3R	16941480	16941549	16941480..16941549	CG5771-RB,CG5771-RA,	FBgn0015790,	Rab11,	1	.
CG6705-RA	TGGGCGAGAAGGAAGCTGCAGTACGAGTACTATGTGGTCAAGTATGTGACCCTGCTGAAACTGCACGG	68	-	chr3R	17604260	17604328	17604260..17604328	CG6705-RB,CG6705-RA,	FBgn0003867,	tsl,	1	.
CG14457-RA	TGGATGTGCTGAAGAAGATATTTCACTTCATTCCAGCCAACTTCTTTGTGAGCGACATCCCGACGCCGG	69	+	chr3L	22672956	22673025	22672956..22673025	CG14457-RA,CG14457-RB,	FBgn0037174,	CG14457,	1	.
CG30498-RA	GGCGTAACCATCGAGAACAAGGAGTACCCAGGTGTCAATGCGAAAAAGGACGAACTGTAGGCCGGTTC	68	-	chr2R	3453454	3453522	3453454..3453522	CG30498-RA,	FBgn0004132,	boca,	1	.
CG11403-RA	GCAGGCAACGAATACTACGAGAATCTCTGCGTAAAGGCTGTCAACCAGTGCATAGGACGGGCAGTGC	67	-	chrX	1131280	1131347	1131280..1131347	CG11403-RA,	FBgn0026876,	CG11403,	1	.
CG10965-RA	AAAGGATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCTTCCAGGGCGAGACCAACCTCATCACTT	66	-	chrX	8165234	8165300	8165234..8165300	CG10965-RA,CG10965-RB,	FBgn0030028,	Corp,	1	.
CG15017-RA	GCGCGGCTGCAAGTACAGTTTGGAGCGGGCCAAGTCCAAGTTAGATAAGTACTACACGCTGAAGACCAA	69	+	chr3L	4365665	4365734	4365665..4365734	CG33514-RA,	FBgn0053514,	CG33514,	1	.
CG2846-RA	ACACGACTTTAACTGTGACCTTTACGGCCAGACACTCAAGATATGCATTGTAGGCTACCTGCGACC	66	-	chr3R	3738354	3738420	3738354..3738420	CG2846-RA,	FBgn0014930,	CG2846,	1	.
CG11051-RA	AGAGTTCCGCAGCAGTTACAAAAAACCAACACAAAAATGGCCAAGCTCGCAATTTGCATCCTCGTGT	67	+	chr3L	13349662	13349729	13349662..13349729	CG11051-RA,	FBgn0040813,	Nplp2,	1	.
CG32423-RA	CGTGGCATCTCGATGATGGTTAGCGGTGATACGGGCGTGCCATATGGAACAATGATGCCTCAGTTG	66	-	chr3L	5156090	5156156	5156090..5156156	CG32423-RA,CG32423-RD,CG32423-RB,CG32423-RC,CG32423-RE,	FBgn0052423,	shep,	1	.
CG1028-RH	ACTGACTGCATGTGGTACTGCTTTAGGCTTAGAGGATGTTGCATAAGTGGGGATAGGGCTCGGCCG	66	-	chr3R	2733159	2733225	2733159..2733225	CG1028-RH,	FBgn0260642,	Antp,	1	.
CG2004-RA	GCAGAGTCTATCATCTCCTGGGAATCACTGCAAGAGGAGCTAAAGAACTTTGGTCGCTTTGGTTGCG	67	-	chrX	8606815	8606882	8606815..8606882	CG2004-RA,	FBgn0030060,	CG2004,	1	.
CG32263-RA	CGGCGATGCAATTGCTCAGCAGTACGAGAGGTTTGGTGAAAAGAAAGCCTTTGACTACTCTCGCTCAGG	69	-	chr3L	3810737	3810806	3810737..3810806	CG32263-RA,	FBgn0052263,	CG32263,	1	.
CG1548-RA	TCCAAGAAGTGCCACCTGACCAACATCGCCTGTTTGATGCACAACAAGTACGATGCCTCCAAGTCGAA	68	-	chr2R	3710603	3710671	3710603..3710671	CG1548-RA,	FBgn0029093,	cathD,	1	.
CG3605-RA	TGTGGCAGAACTGAAACAACTGGTCTCTCGACCTGACGTAGTGGAGATGCACGATGTCACAGCGAGAGA	69	-	chr2L	3027972	3028041	3027972..3028041	CG3605-RA,	FBgn0031493,	CG3605,	1	.
CG3546-RA	AGGGTCGCTGGAGAGACCATGATCGAGGTGGACGAAAATGGCGATGAGTACGAGCTGAAGCGATTCTAT	69	+	chrX	4452160	4452229	4452160..4452229	CG3546-RA,	FBgn0029716,	CG3546,	1	.
CG6415-RA	CCGGGAAAGCTTCTCTCGATCAACTCTACTTCATGAGTTCCTTCGTCACCACATTGGCTGGAATCCCCA	69	+	chr2L	10704263	10704332	10704263..10704332	CG6415-RA,	FBgn0032287,	CG6415,	1	.
CG32023-RA	CAAGGGATCGACTCCAGCTTCCTGCACTCCAGATGCCGAAATATCGTGTCCTCCTTGCAGTGGAG	65	-	chr3L	8796933	8796998	8796933..8796998	CG32023-RA,	FBgn0052023,	CG32023,	1	.
CG11491-RB	ACTACCACGTAGACATTTCAATTTCGGATCTCACAGAACGGAAAATTCAAAGACTTTTTCGGCCA	65	+	chrX	1543345	1543410	1543345..1543410	CG11491-RC,CG11491-RB,CG11491-RL,CG11491-RM,	FBgn0000210,	br,	1	.
CG17737-RA	GGGCGATCAGCGTGAGAACATCTGTCAATGGTTGACGAAGGTGGGTCTAGCTAAGCCGGATCAGC	65	+	chr3L	3224375	3224440	3224375..3224440	CG17737-RA,	FBgn0035423,	CG17737,	1	.
CG18262-RA	GGACGTCGTCGAAGTACAGGGAAATGAGGAGCTACATGAGGAACTGGCAAAGGAAGCTAGCCCGGAC	67	+	chrX	8047297	8047364	8047297..8047364	CG18262-RA,	FBgn0030012,	CG18262,	1	.
CG14914-RA	TGGCAGCGATCGGCCAAGTACAAATGGTTAGGAGATGCAACAGTAACAGCGAAAACAGCAACAGCCACA	69	+	chr2L	11068934	11069003	11068934..11069003				0	no match
CG4480-RA	CCGGAACTGAGCCAGAATTATCCTCCGGCAATCTCCAAGAGCCCTTAAGTTTACGCGATGAGCTCCG	67	-	chr2L	14871874	14871941	14871874..14871941	CG4480-RB,CG4480-RC,	FBgn0032553,	CG4480,	1	.
CG14701-RA	TCCCAGCTGCTCCCTAGTCATCAAGGTCATATACGATCCGGAGATGTTCAAAGCTGAGGAGGATGAAGA	69	+	chr3R	7057950	7058091	7057950..7057990,7058062..7058091	CG14701-RA,	FBgn0037883,	CG14701,	1	.
CG10882-RA	ACGACAAGCTGGCACCAGAAGAGAACGTGTACCTTCAAGTCGCACTCTTGTACACCTCGTGCAGC	65	-	chr2L	2232946	2233011	2232946..2233011	CG10882-RA,	FBgn0262126,	gho,	1	.
CG7669-RA	AGGAGGACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTACCACCGCCC	65	+	chr3R	14188547	14188612	14188547..14188612	CG7669-RA,	FBgn0038607,	CG7669,	1	.
CG3433-RA	ATGAGCACGATCCCACCTACTACCCGCGCTTTAAGAAGTGGTGCGACGACTACTTCCGCATCAAG	65	+	chr2L	6965242	6965307	6965242..6965307	CG3433-RA,	FBgn0021944,	Coprox,	1	.
CG5572-RA	GCGGATATCAAGTGGGTGTTACTGAGTGCCTGTCTGACTCTCATCCAGTGTTGTTCATGCCGCCTGT	67	-	chr3R	23623606	23623673	23623606..23623673				0	no match
CG7991-RA	CTGGTCACCGGGATCAGGAGGAGAGCTTCGAGTACAGCTCCGACTATGTGGAGATCGACGAGCTG	65	+	chr3L	1712954	1713019	1712954..1713019	CG7991-RB,CG7991-RC,	FBgn0035260,	CG7991,	1	.
CG30089-RA	GCCAGGCCTCTAAAGTTTTGTATTCAGAGCGGGGTAAACATCCGAGTTTCTCTGAGTGGGGTATTCGGA	69	+	chr2R	11649644	11649713	11649644..11649713				0	no match
CG18004-RB	TCGTCCGATAACAATGCTTGGGTTGATGATGTGCGAAAAACTGGCAGTTATCGCAATGCTCCCATCTCT	69	+	chr2R	6772678	6772747	6772678..6772747	CG18004-RB,	FBgn0033566,	CG18004,	1	.
CG3513-RA	CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCACCGAGTTCATTTTCG	65	-	chr2L	3692908	3692973	3692908..3692973	CG3513-RA,	FBgn0031559,	CG3513,	1	.
CG3616-RA	GCACTTCGGGTCCCCGTGATGGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATG	69	+	chr2R	20519540	20519609	20519540..20519609	CG3616-RA,	FBgn0015040,	Cyp9c1,	1	.
CG13641-RA	TCTCAGCCGTCTCATCCTGCCAGTGTCCATTATCCGCACAAGAATCAGGATCTTTACGGAGGTGGAGGT	69	-	chr3R	20690023	20690092	20690023..20690092	CG13641-RA,	FBgn0039239,	CG13641,	1	.
CG33230-RA	GCTACTCCACTCCGTATTTCTGCTCCATACCCGAGCTACAGTGTCTGCCAGAATCCCTGCTAGAGCG	67	+	chr3L	1619329	1619396	1619329..1619396	CG33230-RA,	FBgn0053230,	CG33230,	1	.
CR30082-RA	AATCAACACCGCCACAGTTCTGCAAACAGTGAACCTGATCAGGCTTGACCAAAGCGACTGTGAGC	65	-	chr2R	11572750	11572815	11572750..11572815	CR30082-RB,	FBgn0050082,	CG30082,	1	.
CG11586-RA	GCTGAAAGGTGAACAGTATTAGATATATAGACCATTTAAACTGCCGAATAAACCCACCAAGAACA	65	-	chr3L	4261297	4261362	4261297..4261362	CG11586-RA,	FBgn0035520,	CG11586,	1	.
CG14762-RA	CCCAGTCGAAATTCGCAAGCTCCTCGAGTCCATGTGTCGTGTTAACCAATTCTCAGCAACCATGGCCAA	69	-	chr2R	3897428	3897497	3897428..3897497	CG14762-RA,CG14762-RB,	FBgn0033250,	CG14762,	1	.
CG2244-RA	TCCTCCATTTCCATACACCATGGATGCACTGCTCAACTAGGAGCACTCTCTGGTTTGACTGACGGGC	67	-	chr3R	1465997	1466064	1465997..1466064	CG2244-RA,CG2244-RB,CG2244-RC,	FBgn0027951,	MTA1-like,	1	.
CG5316-RA	TCATCTCCAAGGACTTCGTATCAACAAGCCTGAAGACCAAGAAGCATTGGAACTCATTCAACACCGAGC	69	+	chr3R	15229753	15229822	15229753..15229822	CG5316-RC,CG5316-RA,CG5316-RB,CG5316-RD,	FBgn0038704,	CG5316,	1	.
CG11249-RA	CGATGTCCGCTATGCACTGCGATGGCATGAGACTGTACGCTAGAGTGGTGCTCAACGAGGTCCAG	65	+	chr3L	21666605	21666670	21666605..21666670	CG11249-RA,	FBgn0037115,	CG11249,	1	.
CG7597-RB	AGCAACCATGGTGGGGGATGCTTAGCATTTGCTGTTTGCTTCGCTACTTAATGTGAAGGAGAGCTACAT	69	+	chr3L	21514856	21514925	21514856..21514925	CG7597-RB,CG7597-RA,	FBgn0037093,	Cdk12,	1	.
CG6597-RA	CGGATCTAGCTGAGAAAAGCTGTATCGAGTCGCCTATTTCTAGTTCAACTTTGGGAGCTCAGTGCGGA	68	+	chr3L	20301913	20301981	20301913..20301981	CG6597-RA,CG6597-RB,CG6597-RC,	FBgn0036967,	CG6597,	1	.
CG33075-RC	ACATCGTCAACAAACACGCCGTAGCACACGATTCGCCTTCTCATCTCATCTCACATCACCGTTTGCC	67	+	chrX	19507870	19507937	19507870..19507937	CG14209-RD,	FBgn0031039,	Shawn,	1	.
CG4863-RA	GGCAGCGATCAATAAACAGATTTTGGCTAAGCTGACTCATTAATCTTTTCAATTGCATCTAATGGGAAA	69	+	chr3R	7050632	7050701	7050632..7050701				0	no match
CG10756-RA	CCTGGTGCGCAAAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCATGAACGAGGAGTTGAA	69	-	chr2L	20093355	20093424	20093355..20093424	CG10756-RA,	FBgn0032847,	Taf13,	1	.
CG7835-RA	AAACTATATAAAAATAAACGAAATAAGCATATCATTTTGATTGAAAAAAGGAAGCGGTTAGTGCA	65	-	chrX	17768955	17769020	17768955..17769020	CG42273-RH,	FBgn0259168,	mnb,	1	.
CG33336-RA	CAGGGCAAGGGAATTTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAAC	65	-	chr3R	18876330	18876395	18876330..18876395	CG33336-RA,CG33336-RB,CG33336-RC,CG33336-RD,	FBgn0039044,	p53,	1	.
CG7024-RA	CGGCATACCGTTGTCATGCCTGGACCTATTTAATGGGTGTTTCCCTTTACGAAATAATGGCGGAATTGT	69	+	chrX	4600266	4600335	4600266..4600335	CG7024-RA,	FBgn0029722,	CG7024,	1	.
CG6546-RA	TGCGCAAACTGCCAGAGAACCTAACTCAGTCGTGGCAAAACTACATGTTGCAGCTCATGATGCAAGACT	69	-	chr2R	13317467	13317536	13317467..13317536	CG6546-RA,	FBgn0025716,	Bap55,	1	.
CG7546-RA	ACACACAATGGGTCAAGACGCAACAGAGCCCAATCAAAAACAATTTTTGCGGTGCATGAATGAGCAAAA	69	+	chr3L	7509789	7509858	7509789..7509858	CG7546-RA,CG7546-RB,CG7546-RC,CG7546-RD,CG7546-RE,	FBgn0035793,	CG7546,	1	.
CG10646-RA	GTGGATCCGTGGATCTTTGCTTCGCTCAGCTACGATGGTCGCGTCATAATCTCAAAGGTGCCCAAGC	67	-	chr3L	12495750	12495817	12495750..12495817	CG10646-RA,	FBgn0036292,	CG10646,	1	.
CG15071-RA	ACCCAACAGTTCCTCCACGGCAGATCTAATAGGTCTGATCAACGAAATCGAACAGGAGAAACTTGTGCT	69	+	chr2R	14584425	14584494	14584425..14584494	CG15071-RA,	FBgn0034377,	CG15071,	1	.
CG17828-RA	GGCAAGTCCTTTGAAACGTTGGTAGTTTGCAACCGGGTTTGCCAACTTCCTTTGGAGTTCAGTGGTGCT	69	+	chrX	515713	515782	515713..515782	CG17828-RA,CG17828-RD,CG17828-RC,	FBgn0016038,	mod(r),mod(r),mod(r),	1	.
CG31551-RA	TGCAGAGAGACCAATCAGTTCCAGTCAAGAGTACTTTCAGCCAGGATCCCTGCATACTCGCAGCGAGC	68	+	chr3R	1456581	1456649	1456581..1456649	CG31551-RA,	FBgn0051551,	CG31551,	1	.
CG1911-RA	GCTGGCGCCATTTATCATAGAGATTTGCAAGCGTCCAGGTGAGTTTGGTGATCCCACGTTGCAACAGG	68	+	chr3R	25504855	25504923	25504855..25504923	CG1911-RA,	FBgn0039680,	CAP-D2,	1	.
CG10687-RA	GCACGGAAAGCTCTGTAGTCCTGTTCGGTACCCTGAAACTAGTTCCAGAAGGAAAGACGGCGCCG	65	-	chr2L	19131104	19131169	19131104..19131169	CG10687-RA,	FBgn0086443,	Aats-asn,	1	.
CG14834-RA	CGCCAGCACTTCAATGCAGTCGCCTCGAAATCGTCGCTCAAACATAACCATCTACAAGCCCTCCACAAA	69	-	chr3L	7339663	7339732	7339663..7339732	CG14834-RA,	FBgn0035768,	CG14834,	1	.
CG1454-RA	TCGACGAATGCTCTACCAGTGCGATCTGGGAACTACTATCTACCCGCCTTTACGCTGAATGCACACGGA	69	-	chr3R	24634233	24634302	24634233..24634302	CG1454-RA,	FBgn0005642,	wdn,	1	.
CG5670-RE	ACGGCTTCTTGCCCAAGAAACTGTTTGGCATTCGTAAGATGTGGGACTCAAAGGCTGTTAACGATCTAA	69	+	chr3R	16798977	16799046	16798977..16799046	CG5670-RB,CG5670-RC,CG5670-RE,CG5670-RF,CG5670-RG,CG5670-RH,CG5670-RA,CG5670-RD,CG5670-RI,	FBgn0002921,	Atpalpha,	1	.
CG6169-RA	CGCCGTCGTAGGAGGTACTGTATCCTCGAAGCGTCAACTGTTCCATAGCCAAAGTCAGAACGATGCGC	68	-	chr3L	15815193	15815261	15815193..15815261	CG6169-RB,CG6169-RC,CG6169-RA,CG6169-RD,CG6169-RE,	FBgn0036534,	Dcp2,	1	.
CG31800-RA	CTTCAGGCCCAAGCGATGGAGATACTTAAGGAGTCCACTCTCAACCGAGATCTGCACAGTGCGGC	65	-	chr2L	19034076	19034141	19034076..19034141	CG31800-RA,	FBgn0051800,	CG31800,	1	.
CG14514-RA	CCGGAACTAATAGATCACCAAGCCACTAGGGAAGCACAAAGCAAGTCAGGCAAGGACACAGCGGGAAA	68	+	chr3R	25050995	25051063	25050995..25051063	CG14514-RA,	FBgn0039654,	Brd8,	1	.
CG32464-RD	ACCGGAAATCTACTATCCCAAACCAGTATTAGTCGAAGAAGACTCCAAGGAGCTACCCGAGCAGCAG	67	-	chr3R	1121905	1121972	1121905..1121972	CG32464-RO,CG32464-RP,CG32464-RN,CG32464-RM,CG32464-RG,CG32464-RB,CG32464-RJ,CG32464-RK,CG32464-RF,CG32464-RR,CG32464-RS,CG32464-RT,CG32464-RU,CG32464-RV,CG32464-RW,CG32464-RX,CG32464-RY,	FBgn0013576,	l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,l(3)82Fd,	1	.
CG32236-RA	TCCAATCTCTGGATGGAGGCTGAACTTGTACCGGCTGTTCATGATTCCCTGCACAATCACCACAGCG	67	-	chr3L	4666333	4666400	4666333..4666400	CG32236-RA,	FBgn0046793,	CG32236,	1	.
CG15029-RA	AGTGGATGATGTGGCTTCACGCTATGAGGAAGAGGTTCCACCAAAAGAAGAATTGCCTCCACCAACAGT	69	+	chrX	15081091	15081160	15081091..15081160	CG15029-RA,	FBgn0030619,	CG15029,	1	.
CG5680-RB	GGGACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGGCCCATAGGATCAGGTGCCCAAGGAA	69	-	chr2L	10249101	10249170	10249101..10249170	CG5680-RB,CG5680-RF,CG5680-RD,CG5680-RE,	FBgn0000229,	bsk,	1	.
CG6459-RA	CGGTGGCAAGTGAATGTTCGTCCCACTTAATCTTAAAGCATAAAGTTGTGTAGGTTTTTAAGTTTCTAT	69	-	chr2R	13559013	13559082	13559013..13559082	CG6459-RA,	FBgn0034259,	CG6459,	1	.
CG1438-RA	AGCCAGAAGTTTGTGAACAAGAGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTT	69	+	chr3R	26723413	26723482	26723413..26723482	CG1438-RA,	FBgn0015032,	Cyp4c3,	1	.
CG9976-RA	AGATAACCACTAAGCAACCCGTAAACTTATCTCGCACTTCTGCAAATATATCATTGGGTATAAAA	65	+	chr2L	19418213	19418278	19418213..19418278	CG9976-RA,	FBgn0016675,	Lectin-galC1,	1	.
CG9868-RA	ACCACCACTCTGGGTTTCAAGTATCGCGGAGGAGTGATTCTGTGTGCTGATTCTAGGGCCACCTC	65	-	chr2R	19196917	19196982	19196917..19196982	CG9868-RA,	FBgn0034842,	Prosbeta5R,	1	.
CG5144-RA	TGCCAGCAAAGGAAATGTGGACAAGGAGGTGATGGAGCAAATGGAGAAGGGCTACAAGAAGTTGGCC	67	+	chr3L	9040669	9040736	9040669..9040736	CG5144-RA,	FBgn0035957,	CG5144,	1	.
CG31959-RB	CTACTCCAGCCACATGGATCGCAGCTACGACTCCGAGGATGAACACACTGGTCGCCGAAGACTTC	65	+	chr2L	3758543	3758608	3758543..3758608	CG31959-RB,	FBgn0051959,	CG31959,	1	.
CG4806-RA	CCACTCCAAGGGTACAGCCTTCGTTAAATTCAAAGCCAAGGAGTCAGCGGATCTTTGTCTGCAAGCTGG	69	-	chr2R	20554952	20555021	20554952..20555021	CG4806-RA,	FBgn0260456,	CG4806,	1	.
CG18468-RA	TGCCGAAAACCAAGTGTCAGGAGTTTCTTCTCAGTCAGTTGCCTTTCGTGAAATCTATGGCGCAAGCGG	69	+	chr2R	13319112	13319181	13319112..13319181	CG18468-RA,	FBgn0034217,	Lhr,	1	.
CG1102-RA	ATCAAGCTGAAGGCTGAGTTGGATACGGTACCGACGTCCGAATGCAACCAAAGATACGCCACCCAA	66	+	chr3R	135038	135104	135038..135104	CG1102-RA,CG1102-RC,	FBgn0027930,	MP1,	1	.
CG3560-RA	CAGAAAGGGACCCGCAGTTCTCTCAAATCTGGGCAGATGGGCCTACAATCTCTCCGGATTCAACCA	66	+	chrX	16180459	16180640	16180459..16180482,16180597..16180640	CG3560-RA,	FBgn0030733,	CG3560,	1	.
CG32922-RB	TGGGCCCGATGAAGAAGAGTTATATGCGGATGAGCTGGAACTAGACATGGATGACCGAGTGGCCG	65	+	chr3R	6521209	6521274	6521209..6521274	CG43161-RC,CG43161-RD,CG43161-RE,	FBgn0262717,	Skeletor,	1	.
CG14872-RB	CGCCGTTGTCTGTGGATACGGGAGCACCTCTTTGATACCTATCTTCAAGTTCTTCACTCGAGACCGCGA	69	-	chr3R	11335066	11335135	11335066..11335135	CG14872-RB,	FBgn0038346,	CG14872,	1	.
CG8085-RB	TAAGATCGTAGCCACTTTCAGCGAGTCATCGTTGGCAGTCCAACCCAAATGCGTCACCATCTCGC	65	-	chr2R	9875453	9875518	9875453..9875518	CG8085-RB,	FBgn0020620,	RN-tre,	1	.
CG16879-RA	ACAGCTGCTAAAGTCGCGGGATAATCTGCTGCGATACTATAACTTCATGAGGCGCTTCTATGCCGGGG	68	+	chr2L	14106041	14106109	14106041..14106109	CG16879-RA,	FBgn0028904,	CG16879,	1	.
CR40459-RA	ATTATATAAAATAATCTTATCTGGTAAAGCGAATGATTAGAGGCCTTAGGGTCGAAACGATCTTA	65	.	.	.	.	.	CR41602-RA,CR40596-RA,CR41540-RA,CR41619-RA,CR40560-RA	FBgn0085813,FBgn0085753,FBgn0085797,FBgn0085825,FBgn0085743	CR41602,CR40596,CR41540,CR41619,CR40560	5	.
CG2955-RA	GCCCGAAAAGACCGAAGATGCACCGAAGCCCCTAGAAAAATTCGACGAAAAGCCTGACAGTTTCGTGGA	69	+	chr2L	4149710	4149779	4149710..4149779	CG2955-RA,	FBgn0031585,	CG2955,	1	.
CG7625-RA	CGCAGCTGAACCCCCTCATCGGACCCAAACTAAGCATGAACGAAATCATGATCATGGCCCGCGAG	65	+	chr3L	21533388	21533453	21533388..21533453	CG7625-RA,	FBgn0028663,	VhaM9.7-b,	1	.
CG31132-RA	CAACAACCAGCGGTTTCCACCCACGATCACAACTACCTAGGCAACGTGAATTCATCGAGGGCACC	65	+	chr3R	20153071	20153136	20153071..20153136	CG31132-RA,	FBgn0011785,	BRWD3,	1	.
CG3661-RA	ACGGGGTGTTTATATACTTTGAGGACAATGCCGGGGTAATAGTAAACAACAAGGGCGAAATGAAGGGCT	69	+	chr2R	18743016	18743085	18743016..18743085	CG3661-RA,	FBgn0010078,	RpL23,	1	.
CG5407-RA	CAGGACTCCATGAGATATGTACATATATTTTTCAAACAAACTGTATGCGGCAGGGTAAACTAATCTGGC	69	-	chr3R	13221288	13221357	13221288..13221357	CG5407-RA,CG5407-RB,	FBgn0038504,	Sur-8,	1	.
CG8974-RA	GGGGAACAAGGCAATACGAGGATGAACAGACCCTGTCCAAGCTGTTTTCGTATTTGGCCGTTGTGTGGA	69	-	chrX	15688156	15688225	15688156..15688225	CG8974-RC,CG8974-RA,CG8974-RB,CG8974-RD,CG8974-RE,	FBgn0030693,	CG8974,	1	.
CG8821-RB	TGGGAGACTAGAGCCTCAAACCAAATACCCACGCAACAGATCCAGACTTCTCAAAGTGCCGAAGCGTGT	69	-	chr2R	8395715	8395784	8395715..8395784	CG8821-RA,CG8821-RB,	FBgn0033748,	vis,	1	.
CG4422-RA	AGGAGCAGTAAACGGGAATGAAGGCCTCATCTGGTTATGGTGCATTTGGACAGCTCAACATCAGCCACA	69	-	chr2L	9492025	9492094	9492025..9492094	CG4422-RA,CG4422-RB,	FBgn0004868,	Gdi,	1	.
CG9413-RB	TTTTGCGACTTGTGTCTGCTTTGACAAATCGTTGCAACCAAAACTAGAACTAGATTTAGAGAGACGGTT	69	-	chrX	14479241	14479310	14479241..14479310	CG9413-RA,CG9413-RB,	FBgn0030574,	CG9413,	1	.
CG32692-RA	AGCGAGGGAGACAAAGGCATGAAAGTGAAAAACGAGAGACAGAAAGAGAAGACTGGTGAGTATGCGTGT	69	-	chrX	9896716	9896785	9896716..9896785	,CG32694-RE	,FBgn0052694	,CG32694	1	.
CG8937-RC	GGAGGTTGATTAGTGAAGTAGAAATTTACTATGGGTTCTACAGTTGATTTTAAAATGGTTTGAAATCCG	69	+	chr3L	13970724	13970793	13970724..13970793	CG8937-RC,CG8937-RA,CG8937-RD,	FBgn0001216,	Hsc70-1,	1	.
CG5452-RA	CCCATTAGTACCTAATTGTGTGTAGTACAGACGTTTAAAATAATATTATAAGAGGCCTAGACGAGCCGA	69	+	chr3R	14808186	14808255	14808186..14808255	CG5452-RA,	FBgn0022338,	dnk,	1	.
CG6992-RI	CAATGTCACCTGTGACTCCTACCACGAGGTGGATGGTGACGAGCTGTCCATTATTGAGCTGGGCG	65	+	chr2L	5558366	5558431	5558366..5558431	CG6992-RI,	FBgn0004620,	GluRIIA,	1	.
CG4379-RC	TCGAAGACACAAGCCGGAACAACCTTTTCATCTAGTGTGTGAAGAAGAGTGGAAGGACTTGGAAGACGA	69	-	chr2L	9685104	9685173	9685104..9685173	CG4379-RB,CG4379-RC,	FBgn0000273,	Pka-C1,	1	.
CG3029-RA	AGTGCTTTTTCGCAGTCCTTCATGAATTTCCAACAGCTGTCGACTGTTCCGTAATATTAGGTCCCACGT	69	+	chr2R	19856351	19856420	19856351..19856420	CG3029-RA,	FBgn0003008,	or,	1	.
CG9542-RA	CCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGAAGGGCTACAAGGCGAGCTTTA	69	-	chr2L	6487694	6487763	6487694..6487763	CG9542-RA,	FBgn0031821,	CG9542,	1	.
CG30373-RA	ATTTTGTTATGAAATTTGCTTGAGTTTCCCATCGAAAATGCTGCGTTTGCTTACAAAAACAAGGGTGCT	69	-	chr2R	4052075	4052144	4052075..4052144	CG30373-RA,	FBgn0050373,	CG30373,	1	.
CG12444-RA	TGAAGGCGGCAAATGTGAACATACTACTCCAGACGCACAACATCAGACCCAATTCAGTTTACGGCAGCT	69	-	chr2R	7675761	7675830	7675761..7675830	CG12444-RB,	FBgn0033651,	Tango3,	1	.
CG18102-RB	ACGAAGACCACCCGTGACATGGTGCCCAAAGCAATTATGATGCTGATCATCAACAATGCCAAGGACTTT	69	+	chrX	15795666	15795735	15795666..15795735	CG18102-RH,CG18102-RI,CG18102-RB,CG18102-RC,CG18102-RA,CG18102-RE,CG18102-RF,CG18102-RG,CG18102-RJ,CG18102-RK,CG18102-RL,CG18102-RM,	FBgn0003392,	shi,	1	.
CG12454-RA	GACCGCATCTCAGATCGCGCGATAAGGTAATTGGACTATTATGTCAAAAAGTATTTGGCGTTTAA	65	+	chrX	13963697	13963762	13963697..13963762				0	no match
CG3263-RC	CATTTCCCAAAACTGCCAGCTAACGAGAAGATAACTGCAACAATTTATATCGGATAGCATGGGTTTGCC	69	+	chr3L	20828425	20828494	20828425..20828494	CG42341-RX,CG42341-RZ,CG42341-RA,CG42341-RB,CG42341-RC,CG42341-RO,CG42341-RM,CG42341-RN,CG42341-RP,CG42341-RR,CG42341-RS,CG42341-RT,CG42341-RU,	FBgn0259243,	Pka-R1,	1	.
CG1239-RA	AGATCGGGGGCTAATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCCCGG	65	+	chr3R	1559838	1559903	1559838..1559903	CG1239-RA,	FBgn0037368,	CG1239,	1	.
CG8057-RA	CGTCACCACGCTGCTGTACAAGCCCATTTAGGCAACTCGCAATTGGTATTTTAGCTGTAGGAACATGGT	69	-	chr2R	5023025	5023094	5023025..5023094	CG8057-RA,	FBgn0260972,	alc,	1	.
CG10637-RC	CGCTGCTCGATCGAAAAATTTAGCGTGCCATATAGATGGGGAATGACCCGCGAATACTACTTAAGTGCA	69	-	chr2L	18962528	18962597	18962528..18962597	CG10637-RC,	FBgn0015772,	Nak,	1	.
CG13054-RA	CTCGCCCGGTCTGGATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACCCG	65	-	chr3L	16249699	16249764	16249699..16249764	CG13054-RA,	FBgn0036584,	CG13054,	1	.
CG12432-RA	ACTGCCGGGTTTCTCCACCTCAACGTCGAGCATCAATGATACGGGCTTATCGGGTGAGTTCATCACTAA	69	-	chrX	17426867	17426936	17426867..17426936	CG12432-RA,	FBgn0030843,	CG12432,	1	.
CG4466-RA	GCGGCGAGAAAATGGAGACTAGCAAGTAAAAGACGAAAAGAGGAAGACTAGGAGATGAAGAAGACGAGA	69	+	chr3L	9377898	9377967	9377898..9377967	CG4466-RA,	FBgn0001226,	Hsp27,	1	.
CG8928-RA	CCTGGACACAAGCCTGCGAGAGGACGAAAACATGCAACACATCCTGAAAACCTTTTACAGCAGCATCGA	69	+	chrX	15839138	15839207	15839138..15839207	CG8928-RA,	FBgn0030711,	CG8928,	1	.
CG13875-RA	GGTGGCGGATATCCACCATGTGGAACGAAAACTTTTCACGGCCAATGAACAGCTTAAAGCCAAACTGGC	69	+	chr3L	181965	182034	181965..182034	CG13875-RA,	FBgn0035104,	CG13875,	1	.
CG1897-RA	GCGGTCCTCGAGCGGAAACCCCCAAAATTTTGCTGTGATGTTAGCGCATTTTACGTTACGATACTTCCA	69	+	chr3R	25390321	25390390	25390321..25390390	CG1897-RA,	FBgn0000492,	Dr,	1	.
CG1066-RB	ACAACTGCACTGGGAAAGGTTATTGGTACTGTGTGTTGCATATGCGGTGTTCTGGTAATCGCTTTGCCT	69	+	chr3L	2941368	2941437	2941368..2941437	CG43128-RA,CG43128-RB,CG43128-RC,CG43128-RG,CG43128-RH,CG43128-RI,CG43128-RK,CG43128-RJ,CG43128-RL,	FBgn0262593,	Shab,	1	.
CG18302-RA	GGCTTCCTGCTTAGCGATATGGGATACGATGTTTGGTTGCTAAACACGCGGGGAAATAGGTATTCCCGG	69	+	chr2L	10535337	10535406	10535337..10535406	CG18302-RA,	FBgn0032266,	CG18302,	1	.
CG5059-RA	AGCGTGGCATACTCCTTACCCGTGTGGTCATTGACTGAAAGATGCCATAAACAAAAAGGAGAAAGAGGA	69	-	chr3L	20508400	20508469	20508400..20508469	CG5059-RA,CG5059-RC,CG5059-RB,CG5059-RD,	FBgn0037007,	CG5059,	1	.
CG6708-RA	GCAGAGGGGCACAAATGCATCCTGAACTTTATCCCCTACTCGTACTTTAGTCGCGATGTGCAGCGAAGC	69	-	chr3R	20761651	20761720	20761651..20761720	CG6708-RA,	FBgn0020626,	Osbp,	1	.
CG18675-RA	GAACCGTCCAAGGCTCAGTTCTGGTTTGCAGGACACCAGATGCTGATGGGGAAGCTAATGAGCGACTAT	69	+	chr3L	4174570	4174639	4174570..4174639	CG18675-RA,	FBgn0040696,	CG18675,	1	.
CG13926-RA	AATGTGCCCGACATAGAATCCGTCAACTACCTGGTAGTATTCCTCACCGGCGTATCACCCCTGCC	65	-	chr3L	1617956	1618021	1617956..1618021	CG13926-RA,	FBgn0035243,	CG13926,	1	.
CG32681-RA	GGGTGGAACTAGGCCTAGATCGGGACACAATCCGCAACTGGATTACTACCATCAAAGAGGCTACAGCCA	69	-	chrX	10271354	10271423	10271354..10271423	CG32681-RA,	FBgn0052681,	CG32681,	1	.
CG30269-RA	CAACTCGCGCACCCATCTGATAGCCTTGATATTATGCCTGTTCCAGTTGTACTGCTGTGTGTGTCTGCC	69	+	chr2R	18555775	18556177	18555775..18555820,18556153..18556177	CG30269-RA,	FBgn0050269,	CG30269,	1	.
CG31884-RB	AGCAAAACCTATCGCATAGATGTGCCAATCGGTCTATCCATTCGAAATTCACCTTCACCAAACGCGACA	69	+	chr2L	9613261	9613330	9613261..9613330	CG31884-RB,	FBgn0040070,	Trx-2,	1	.
CG30476-RA	CGATTTGTTTTTTGTGAAATGGGTGAAGAAACTATTAACTCAACGCAAAACAAAACCAGAACGAAAACT	69	+	chr2R	10640076	10640145	10640076..10640145	CG30476-RA,	FBgn0050476,	ave,	1	.
CG11242-RA	ACGGTTCCAGGTAATCCAACACGACGAGGAACAATCCGATACAATGGTCCGCTCGAAGGGAAAAGTGGT	69	-	chr2R	15373537	15373606	15373537..15373606	CG11242-RA,	FBgn0034451,	CG11242,	1	.
CG3285-RA	CGGTTGACTGGTTACCCCTTGTGATCTTGTCCTGCTTCGTATTCCTCTGCAACATCGGCTTGGTGGGAT	69	+	chr2L	3332308	3332377	3332308..3332377	CG3285-RA,	FBgn0031522,	CG3285,	1	.
CG10023-RA	CGGCGGATCATTTGTCCAGCTTGACATCTGCAGAAGAACAGATGGGTTCAAATGCACGAAACCTGGGCA	69	-	chr2R	15319510	15319579	15319510..15319579	CG10023-RB,CG10023-RC,CG10023-RA,CG10023-RF,CG10023-RG,CG10023-RD,	FBgn0020440,	Fak56D,	1	.
CG40080-RA	CCGGAACTTTTTGGAGACAATCAACTTTTTGCAGTCCTAGAACTGAAGTTTGCCGGAAGTGACATGGCA	69	+	chr2RHet	3215092	3215161	3215092..3215161	CG40080-RA,	FBgn0046706,	Haspin,	1	.
CG12502-RA	CCAGTCGAACATCCAGTATCGAGTCTCGGCGTGTTCAAGTAGATCTTCATAGTCCCGAAGTGATGCCCA	69	+	chr3L	869724	869793	869724..869793	CG12502-RB,CG12502-RC,	FBgn0035171,	CG12502,	1	.
CG10717-RB	CCAGCAGACCCAACCCAAGGGCAAGGACATTGATAGGCTCAAGTACCAAGTAGCTTAGAAAGCAATGGC	69	+	chr3L	13376947	13377016	13376947..13377016	CG10717-RA,CG10717-RB,CG10717-RC,	FBgn0001256,	ImpL1,	1	.
CG7394-RA	GACGCGCACAAGAAGATCATGCTGTTGAACCATCCGGATCGAGGAGGATCTCCCTATTTGGCGGC	65	+	chr3L	11556408	11556473	11556408..11556473	CG7394-RA,CG7394-RB,CG7394-RC,	FBgn0036173,	CG7394,	1	.
CG13633-RA	ACTTATATACTTGGGGCAATCTCTCTCAGAAAGAGCGACACGAGTGGCATTCGTTGTGGTCGTCG	65	-	chr3R	20586418	20586483	20586418..20586483	CG13633-RA,	FBgn0015591,	Ast,	1	.
CG13615-RA	CCACAACCCGTGATTGTGCCTCTGAATCCCGCAGATCCCATACAGTCCTTCTACTTCGCCTACCC	65	+	chr3R	20216822	20216887	20216822..20216887	CG13615-RA,	FBgn0039199,	CG13615,	1	.
CG9397-RA	AGAGGGAAAATGTCAGTCACTCAGCCAAAGGATACGGCATTAAAGACCAAGGAGTCGGCAGCTGAAGTA	69	+	chr2R	2390534	2390603	2390534..2390603	CG9397-RB,CG9397-RI,	FBgn0086655,	jing,	1	.
CG12013-RB	CATCGCCAAGGACATTGAAAAGCTGCTGTAGATGTGCCCTAGACGTTAGCTGCTCTTTTGGACTGTGTT	69	+	chr3L	3328411	3328480	3328411..3328480	CG12013-RC,CG12013-RA,CG12013-RD,	FBgn0035438,	PHGPx,	1	.
CG14390-RA	GATCAGACGGCCAATATGACAGTCGGAGTGTTGCCCAAATTCGATCCGTTCATTTCGGGCGTGCG	65	-	chr3R	8573248	8578167	8573248..8573285,8578139..8578167	CG14390-RA,	FBgn0038084,	beat-Vc,	1	.
CR41115-RA	GCGGGTAGCTAAGCGCTGGCAAAGGCAATGACAAAAACAAAGACAAAGGAAATGCCGACGAGATTGAGA	69	.	.	.	.	.				0	no match
CG13484-RA	CGAGGACAAACAGGGCCAGCAAAATGTTCCTCATTTCTACCAGAACAAATCCCCACAGGAGCCGC	65	-	chr3L	14045891	14045956	14045891..14045956	CG13484-RA,	FBgn0036406,	CG13484,	1	.
CG4804-RA	AAGCCCATTGTGATCAGCAATTCCTCCCGCCAGAAATTCTTCCGAGCTGACCATCCATTCTTCTT	65	+	chr2L	10063717	10063782	10063717..10063782	CG4804-RA,	FBgn0032178,	Spn31A,	1	.
CG10166-RA	CCGAACGCCAGTGATTTGACCGGCTCCTTCAGGCTCTACAAGAAGGATGTACTGGAGAAATGCATTGCC	69	-	chr2L	19525656	19525725	19525656..19525725	CG10166-RA,	FBgn0032799,	CG10166,	1	.
CG4527-RA	TGTCTGCCACTGATACGAGAACTGGGACAAAGACAGACGAACCCCAAGCTCATCTTCAAACCGCTGCAA	69	-	chr2R	20283087	20283156	20283087..20283156	CG4527-RA,	FBgn0035001,	slik,	1	.
CG40323-RB	CGAGTACGGAACCAGTACGGGACCCAGTACGGAATCGAGTACGGAATCGAGTACGGGACCAGTACG	66	-	chrU	2014410	2014476	2014410..2014476				0	no match
CG5527-RA	CCGGCATCACGCCAGTAATCGGCAGTTACAAAAACGAAGAGCTGTCGGACACTCTAATCCGCGAGATCA	69	+	chr3R	23782085	23782154	23782085..23782154	CG5527-RA,	FBgn0039564,	CG5527,	1	.
CG10600-RA	AGCACACCCCAATTGATCGTTGACCACGAAGAGGAGGTCTCTGAAGTGTGTTCCGAGGAGATTGTCGAA	69	-	chr2L	18835094	18835163	18835094..18835163	CG10600-RA,CG10600-RB,	FBgn0032717,	CG10600,	1	.
CG5510-RA	CCTGCCACACTGGGACTTCCTGGGTAACACGATGGTGACCAGCAACTATATAAGACTGACGCCGG	65	-	chr3R	19994890	19994955	19994890..19994955	CG5510-RA,	FBgn0039160,	CG5510,	1	.
CG13512-RA	AGACCTCCCAGTACTGTCCCAACTGCAACTCCTGCTTGGGTTCGTTTTGAAGACGCAGCGAAAAC	65	+	chr2R	18548620	18548685	18548620..18548685	CG42565-RA,	FBgn0260767,	CG42565,	1	.
CG31976-RA	GGCACATACGTCATGATCAACATGCGCGTAAGCCCCAAAAACCCACTTCTGAGCCTTCTCTACCAACCG	69	-	chr2L	138820	138889	138820..138889	CG31976-RB,CG31975-RC,	FBgn0051976,FBgn0051975,	CG31976,CG31975,	2	.
CG9216-RA	GCCGCAGCCGTACAGATGATCACTCACGGGAGAAGGGTAAAACTAGATGCTACGATCAGTCATCCAATA	69	-	chrX	15988365	15988434	15988365..15988434	CG42353-RA,CG42353-RB,CG42354-RA,CG42354-RB,CG42354-RC,	FBgn0259699,FBgn0259700,	CG42353,CG42354,	2	.
CG8454-RA	TGCCATTGCGATACAAGTGGCCAAGCATTTAAATCTGCCCGAATCGTGGATCTTGGAACACTGGGCTTA	69	+	chr3R	5094515	5094584	5094515..5094584	CG8454-RA,	FBgn0261241,	Vps16A,	1	.
CG5168-RA	AGGCGTACCATCGGACTGGATCCACCTTAAATAATATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA	69	+	chr2L	10423484	10423553	10423484..10423553	CG5168-RA,CG5168-RB,	FBgn0032246,	CG5168,	1	.
CG6728-RA	TTTGCGTCATTCGGTGGTACAGCAGTTCCTTAACCCGGTCATACATCACTCCAATCTGCGCCTGC	65	-	chr3R	7246536	7246601	7246536..7246601	CG6728-RA,CG6728-RB,	FBgn0037896,	ninaG,	1	.
CG4968-RA	GGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAAAGTACAAGTTCATTCGCCGCACC	66	+	chr2L	10307259	10307325	10307259..10307325	CG4968-RA,	FBgn0032214,	CG4968,	1	.
CG14095-RA	CTGCGCCCGTTTTGGCCAAATACGCTGCTCCACTGGCTTATGCCCCAGCACCTTTGAACTATGCC	65	-	chr3L	19457249	19457314	19457249..19457314	CG14095-RA,	FBgn0036870,	CG14095,	1	.
CG1072-RB	GGAAGGAAGCTCATTTGCGCGTCATATTAACCTGCAGTTAACGTATTCATTTCAGAATAACGCACAGAA	69	+	chr3L	3860645	3860714	3860645..3860714	CG1072-RB,	FBgn0013751,	Awh,	1	.
CG5189-RA	CTCAGCCAGGAGGGAGCTCTATTGGCCTACTCCGGTTATGGCGATAAGGATGCCAGGATAACGGC	65	+	chr2R	14334272	14334337	14334272..14334337	CG30120-RB,CG5189-RA,CG5189-RB,	FBgn0050120,FBgn0034350,	CG30120,CG5189,	2	.
CG30413-RA	CCCTCATCGCCAGTGAGACCATAACCAAGTCGAAATCCTTGCTGGGAATCACCACGAAGACGTATACTC	69	-	chr2R	19217361	19217430	19217361..19217430	CG30413-RA,	FBgn0050413,	CG30413,	1	.
CG1942-RA	TGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCTTTGTGCACCACAAGAAAACCCAATCCGTTG	69	+	chr2R	3600471	3600540	3600471..3600540	CG1942-RA,	FBgn0033215,	CG1942,	1	.
CG9209-RA	ACGTCAACGATGATGCCTGTACGAATGCCGAGTTTCTATTGCAAATCCTCGATCTGGTCACCCAGTCGA	69	-	chrX	15895188	15895257	15895188..15895257	CG9209-RD,CG9209-RA,CG9209-RB,CG9209-RC,	FBgn0003969,	vap,	1	.
CG12798-RA	GCCAGATAAACATAAAACATTTTAAAAAGATAGTTTTTCCAAAGAAATGTGTGAATCATTGTTTCAAAA	69	-	chr3RHet	412751	412820	412751..412820				0	no match
CG5492-RB	ACGAGGAGGGGAATCCCATGGTCACGCAGGAAAATCAGATACCAAGGTCCACAGTCCAGAAGAAACACA	69	-	chr3L	17885260	17885329	17885260..17885329	CG5492-RA,CG5492-RB,	FBgn0036769,	Tsp74F,	1	.
CG12682-RA	CCACGTGGAAATCCCTCTTAAAGCAGATCGATGAAAAGGACATGCAAGAAACCAGGGACGTAACGGCAG	69	+	chrX	4720400	4720469	4720400..4720469	CG12682-RA,	FBgn0029729,	CG12682,	1	.
CG8987-RA	CATTGCCCGCATGATGTCCTACTGGCGCAACAATAGGGATCGAATTATGGGTCAGATGGTGGTCTGGC	68	-	chr2L	13825430	13825498	13825430..13825498	CG8987-RA,	FBgn0004406,	tam,	1	.
CG11168-RA	GCCGCCAGTTCCTAAACCACGCACTCGAATAAACGGCGAATACAACGACTATGCGAATGTGGTGCCAAT	69	+	chr3R	20746505	20746574	20746505..20746574	CG11168-RA,CG11168-RC,	FBgn0039249,	CG11168,	1	.
CG5954-RB	CCCGAGAATATCAGACGTGGATGGGCGAAGAAAACAAAGCGTGCCTGTTCGGAGGCCAAGCAAGC	65	-	chr3R	23093029	23093094	23093029..23093094	CG5954-RB,CG5954-RA,	FBgn0002441,	l(3)mbt,l(3)mbt,	1	.
CG8830-RB	ACAGCCAGGATAGCGAGCACACCGGAGGCCACTAGAACATATACTTGTCTACTTTATGAAACACGCGCA	69	-	chr2R	8319771	8319840	8319771..8319840	CG8830-RB,CG8830-RA,	FBgn0033738,	CG8830,	1	.
CG8603-RA	CAGGATCGGCCAGTTTAGTCCGCAATGTGTATTAGTTTAAAACGATGTGCTTAATTACCACACCCACAC	69	+	chr2R	10239089	10239158	10239089..10239158	CG34379-RD,CG34379-RF,CG34379-RG,	FBgn0085408,	Shroom,	1	.
CG32953-RA	AGGGCATCGATGACTTGGTCAACGAGAAGGAGGAAATTGATACCAATGCAAAAAAAGGCCCCAAAAAGA	69	+	chr2L	11520256	11520325	11520256..11520325	CG14929-RA,	FBgn0032365,	CG14929,	1	.
CG12547-RA	AGGAATTCAGGGAAATGATCGAATAGGTGGACGTCTAGGACCATTGCAACCACTGTCGTCACCGTGGGA	69	-	chr2R	675012	675081	675012..675081	CG12547-RA,	FBgn0250830,	CG12547,	1	.
CG9270-RB	CCCCCCCGTGGATAATCCTGGTCAAATCGGTTTAGTTATTACCCAGGCTATGTCCATGACGGGGACTGT	69	-	chr2L	20930632	20930701	20930632..20930701	CG9270-RC,	FBgn0032908,	CG9270,	1	.
CG13745-RA	GGCCTGGTGCACAGAATGCTATTCGTTCAGCGTCAAAAGACCCACTTAGGTCCCTTCTTCGACAGTGTT	69	-	chr2R	4823491	4823560	4823491..4823560	CG13745-RA,	FBgn0033354,	FANCI,	1	.
CG18156-RA	GCGAACATATTGTGCAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGACACCCG	69	-	chr3L	6961832	6961901	6961832..6961901	CG18156-RA,	FBgn0035725,	Mis12,	1	.
CG8066-RA	GGGGGAACCATATTCTTGCGACCTCAGGTAGCGTACAGAAGAGAGCCTTACCTTTACTATCTGGGAGGA	69	-	chr3R	10393968	10394037	10393968..10394037	CG8066-RA,	FBgn0038243,	CG8066,	1	.
CG5028-RA	CACTATCGCACTACCGAATTCAACCAACTGCTAACAAATTCAGCAAGATAAACCAAATCGAACCA	65	+	chr3R	21508811	21508876	21508811..21508876	CG5028-RA,CG5028-RB,CG5028-RE,	FBgn0039358,	CG5028,	1	.
CG8070-RA	AGGAGGCTGCACAGGAACTGGCTCTTACTCGCATATTCACGGACGAAGATTTCAAGCGCATCAACGC	67	-	chr2R	4999518	4999585	4999518..4999585	CG8070-RA,	FBgn0033379,	Mys45A,	1	.
CG9259-RA	TGTCCTGACCGTTCTCACCATTCCCACTTCAAAAGAGTTCAGGGACGCCCATCTCAGTGAACTTCTGGC	69	+	chr2L	21090444	21090513	21090444..21090513	CG9259-RA,	FBgn0032913,	CG9259,	1	.
CG40127-RA	AGTTTCCCAACTACTTAAAACTAGTATTGAAATTTTCCCTTCGATATATTTGTTAGAGGTGTTTTCCTT	69	-	chr2R	75017	75086	75017..75086	CG40127-RA,	FBgn0262116,	CG40127,	1	.
CG4432-RA	AGGGCAGTTCCAATCGAAATCGGAAGAGAAAACGGAATCCAAGCGTATCAGCGTTGAGCACACTGTCAA	69	+	chr3L	9335606	9335675	9335606..9335675	CG4432-RA,CG4432-RC,CG4432-RB,CG4432-RD,CG4432-RG,CG4432-RH,	FBgn0035976,	PGRP-LC,	1	.
CG7512-RA	ACGCCGGAAGTGGTTAGTTCGAGATACAATAGTCGCCAGGAGTCGAACGACTTGGAGGTGGACCA	65	+	chr3L	11510767	11510832	11510767..11510832	CG7512-RC,	FBgn0036168,	CG7512,	1	.
CG32597-RA	AGGGCCCCGACCTATGCATCTATCTATGCACCCATCATTCAACTACCGATTCACGCTTGCTTTGCTCAT	69	-	chrX	14099943	14100012	14099943..14100012	CG32597-RA,	FBgn0040153,	l(1)G0469,	1	.
CG12624-RA	TGCAGGAGCTGGATGAAAGTGGCTTGAAGGTGGTCTACAAATACTCATCGATGGCGGATGATCTGTTCT	69	-	chrX	11203031	11203100	11203031..11203100	CG34143-RC,	FBgn0083979,	Ir10a,	1	.
CG4627-RA	GCGTCCTCAAATCTCGTGGGCTTCATCTACGTGAACGAGGAACAGGATCTGCTCAAGCTGGCCTAC	66	+	chr2R	9102820	9102886	9102820..9102886	CG4627-RA,	FBgn0033808,	CG4627,	1	.
CG16753-RA	CCGACTGAGTGCCAACGAGAAGATCCGGAAAAAACGCACTGAAATGGTCAACACCGTCAAGTCCTTCGA	69	+	chr3L	3055517	3055586	3055517..3055586	CG16753-RA,	FBgn0035393,	CG16753,	1	.
CG30332-RA	TGGCCCCTTCATGAGTTATGGTCCCCCATTCCCAGAGAGATCGCGGTAATTAAATGCGCTTTTCCCTCT	69	-	chr2R	14488608	14488677	14488608..14488677				0	no match
CG12607-RB	TGCTTTGAACTTCTTAAGTGTAAATTGCTCGTTTGCTTCTGCTCGAGAAAATTTCGTGAAACCCCAAAA	69	+	chr3L	4446590	4446659	4446590..4446659	CG12607-RB,CG12607-RC,	FBgn0035545,	CG12607,	1	.
CG16705-RA	AGTGCGATCAAGCTGAAGATCACCGTCAACGTTTGGAACCTAACGAGTTGTCAGGAAAAGTACTCCAGC	69	+	chr3R	19513527	19513596	19513527..19513596	CG16705-RA,	FBgn0039102,	SPE,	1	.
CG18250-RC	AATCTGTTTGCCATTCGATTGGCTTCAATTGAGCGAGCTGTACCCTCCACAAATACACAGGCAAATCAA	69	-	chr2R	11968839	11968908	11968839..11968908	CG18250-RD,	FBgn0034072,	Dg,	1	.
CG13810-RA	CTTCAGCTTCGTGGGATTGAGTGTGCAGTACTTGGCCGGATTTAGTTACGTGAGCCTGCGTTGTG	65	+	chr3L	2186508	2186573	2186508..2186573	CG13810-RB,	FBgn0035313,	CG13810,	1	.
CG13364-RA	ATGTGGACCATAATCTTTTTATACTTACGATTACCATTAAATAGATCATTGTACGTCAGGATAGA	65	-	chrX	518790	518855	518790..518855	CG13364-RA,	FBgn0026879,	CG13364,	1	.
CR32865-RA	TGGAGAGCGGGGGGAAGTAGATAGCGGGGGGAAGTAGATGTCTGTACGAAAGCGAGAAGCATACAGAAA	69	.	.	.	.	.	CR32865-RA,	FBgn0052865,	alphagamma-element:CR32865,	1	.
CG11282-RA	AGCGGTGCCTTCAGTGGAAACACAAACCTGGAGCACCTTAACCTCTCCAGTAACAAGCAGTTGAACGAA	69	+	chr3L	13269775	13269844	13269775..13269844	CG11282-RA,CG11282-RB,CG11282-RD,	FBgn0023095,	caps,	1	.
CG16716-RB	TGGACAGCCAGAACCATCAACGAAGCGGAAACTGACCAACTTCTTAGCTGGCGAAAGGAAAGAGCCAAT	69	+	chr2R	15483974	15484043	15483974..15484043	CG16716-RC,	FBgn0034459,	CG16716,	1	.
CG8196-RA	GCCCAATAACACGGGACTGAGTAGCTTGGCTCTGCTGGAGTACTATCAACCTGTGTTGGACTGGCTCAA	69	-	chr2R	4927416	4927485	4927416..4927485	CG8196-RA,	FBgn0033366,	Ance-4,	1	.
CG18778-RA	GCTGGTCAGCTCCAGATGGCAAAAAATACGAGATTAGTTTCACGGCCGACGAAACTGGCTACCATCCCA	69	-	chr3L	6124538	6124607	6124538..6124607	CG18778-RA,	FBgn0042119,	Cpr65Au,	1	.
CG5543-RA	GCCGCTGCATACCTGGACAAACCTGTTCTCCCGCTACGACACAACAGATTGCTGCTTTAGTCCAGATGA	69	+	chr2R	19698119	19698188	19698119..19698188	CG5543-RA,	FBgn0034908,	CG5543,	1	.
CG12086-RA	GCAGCCTAATACTTAACACTCGCCTGGGACACTTAACACTCGCCAAACCAAACCATTTACTTAAGCCGA	69	-	chr3L	1503549	1503618	1503549..1503618	CG12086-RA,	FBgn0011204,	cue,	1	.
CG12151-RA	CCGACAGCCAGTCGTTCCTCAAGTGCCACAATGACAACGTGGACTTTGTTAGCATGATCAAGCCCATGT	69	-	chrX	7627179	7627248	7627179..7627248	CG12151-RA,CG12151-RB,	FBgn0029958,	Pdp,	1	.
CR32665-RA	CATTGATAATCGTTCGAAACGTTCTCCGAAGCAAAATCAAGCAAGAGTAACGATTTCCGCATAGTCGAA	69	+	chrX	11473769	11473838	11473769..11473838	CR32665-RA,CR32665-RB,	FBgn0019660,	roX2,	1	.
CG9490-RA	CGCGACGAGTCGAGTCGACCCAGTTTCCGCGAGATACATTTGTATCTGCAGCGCAAGAATTTAGGTTTT	69	+	chr2L	6322036	6322105	6322036..6322105	CG33531-RA,	FBgn0053531,	Ddr,	1	.
CG3971-RB	GGTGGCACACGACCGGTCGGATGAGAGTTTAATTTTGTAAGCCAAAAGTTGTACCGTGTGGACAGGCGT	69	-	chr3L	16642992	16643061	16642992..16643061	CG3971-RA,CG3971-RB,	FBgn0260960,	Baldspot,	1	.
CG13111-RA	GGACGATCTCAGCGACGATGTCAACTCCTCGACGGATGACTGCGGGGACTGTTGTCTGGTGGACG	65	-	chr2L	9373215	9373280	9373215..9373280	CG34366-RC,	FBgn0085395,	Shawl,	1	.
CG9426-RA	ACGCTACAGCTTCGACGAGGATAAGTGGACTACAGTGTGTGCATTAAACGTGCCCAGAGCCATTCCTG	68	-	chr2L	13217407	13217475	13217407..13217475	CG9426-RA,	FBgn0032485,	CG9426,	1	.
CG13801-RA	CACTGGTTGGGCTCTCAGGTGGTGTCTGTGATCCTCCGAGTGGACGAATCATACCAGACCATGGT	65	+	chr3L	2362224	2362289	2362224..2362289	CG13801-RA,	FBgn0035332,	CG13801,	1	.
CG5341-RA	TATCCACGCTATCGGCACTGCTTAGCTCGGATATCGAACTGCTCGTCTTGGACCTGCACACCTTG	65	+	chr2R	14514878	14514943	14514878..14514943	CG5341-RA,	FBgn0034367,	sec6,	1	.
CG4978-RA	GCTGCTAATCCCGCTTTTGGACGCTACAATCCTCGTCGTACCGTGGAGCAGAACATTCAGCTTCC	65	+	chr3L	8886508	8886573	8886508..8886573	CG4978-RA,	FBgn0020633,	Mcm7,	1	.
CG7549-RA	AAAGTGCAACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCTACGACTCCAACATTCCC	67	+	chr3R	4085584	4085651	4085584..4085651	CG7549-RD,	FBgn0260386,	mtg,	1	.
CG6547-RA	GTCCAGACTGACGGTAGGACGTTCCACTTCGGAGTGTTGCAGCTGAATACCCTCGATCTTGGTGC	65	-	chr3R	6608475	6608540	6608475..6608540	CG42632-RB,	FBgn0261380,	mRpL37,	1	.
CG13762-RA	CGGCGGTGTTCATCGACTTTACGCTGTACAACGTGGACGTGAATCTGTTTAGCATTTGTACGCTGCGCG	69	-	chrX	2517432	2517501	2517432..2517501	CG13762-RB,	FBgn0040333,	CG13762,	1	.
CG30222-RB	ATGACCTCTCCCTCAAACTTATGGATCAGGAGACAACCGGAACGTTGGATTCCGAGTGTGCAGATGGAA	69	+	chr2R	17471455	17471524	17471455..17471524	CG30222-RE,CG30222-RF,	FBgn0050222,	CG30222,	1	.
CG5577-RA	AGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACTGCCTCAAAATAGATGTCGGTTTCGCCAGCA	69	-	chr3L	17833053	17833175	17833053..17833082,17833135..17833175	CG5577-RA,	FBgn0036759,	CG5577,	1	.
CG7099-RA	GAGAACAGCTTTGAAAGCCTTCGGCCGAAACTGCAGGAGAGTGGATATGACGATCGTGCCATCCG	65	+	chr2L	13392786	13392851	13392786..13392851	CG7099-RA,	FBgn0032517,	CG7099,	1	.
CG12836-RA	TACGAATCGGACGGCAAAGTCAGGGGTCCCATCGTGGAGGAAAGATGTTCGCAGATAACCGCATC	65	.	.	.	.	.	CG12836-RA,	FBgn0033140,	CG12836,	1	.
CG32029-RA	AGTGCCCGCGTTCCGTCGTCCAAGTGTGATCTAGTATCCAGTAAACCCTTAGCAACATGCAACTCCTTT	69	+	chr3L	8633597	8633666	8633597..8633666	CG32029-RA,	FBgn0052029,	Cpr66D,	1	.
CG40139-RA	TCTACGCTGGCGTGCTCAGGATTTTCAGATCCCGAACTATATAAACTGCCTTCAGCAATAACCGTTTCG	69	.	.	.	.	.				0	no match
CG32717-RC	ACCCCTAGTACCCAATAAAATGTGTAATAATACCCATAAGCGACTCCGAATGTTAACAGAGCCAGAACA	69	+	chrX	8133067	8133136	8133067..8133136	CG32717-RB,CG32717-RG,CG32717-RH,CG32717-RD,CG32717-RF,CG32717-RE,CG32717-RI,CG32717-RJ,CG32717-RK,CG32717-RL,	FBgn0261873,	sdt,	1	.
CG5454-RA	TAGTGCAATGCCAAAGTACTATTGCGACTACTGCGACACCTACTTGACCCACGACTCGCCCTCGG	65	-	chr3R	14809204	14809269	14809204..14809269	CG5454-RA,	FBgn0261792,	snRNP-U1-C,	1	.
CG1131-RA	CGAGCGATCTCGGTCTTAACCTAGATCCCAAACTGCGTGAGAACTACGGCTTGCAACTGAAGAAGGCGT	69	-	chr3R	3313051	3313120	3313051..3313120	CG1131-RB,CG1131-RC,CG1131-RD,	FBgn0015569,	alpha-Est10,	1	.
CG8098-RA	CGTGCACGAGGATCCCTCTTCGCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCT	69	-	chr2R	12544157	12544226	12544157..12544226	CG8098-RA,CG8098-RB,	FBgn0024315,	Picot,	1	.
CG7417-RA	TTTGTGAGGCCTGTGAGAACGTTAGGATCCAGCCGGGTATGATACGCATTGTTCCCAGTGGAGGC	65	+	chr2R	15190986	15191051	15190986..15191051	CG7417-RA,CG7417-RB,	FBgn0086358,	Tab2,	1	.
CG13868-RA	AATACTTTGTCCTTTCCACAGTAATATTCTTTTTAGTAGCATATAGGCACCTCTTACACCAGCACACAC	69	-	chr2R	16196886	16196955	16196886..16196955	CG13868-RA,CG13868-RB,	FBgn0034501,	CG13868,	1	.
CG32817-RA	TGCAATTTGGAAATTTTAAGGGTTCTGATTGCACTTCTCGCTGACCTCAAACAAATCAAAGAAGACAAT	69	.	.	.	.	.	CG3176-RA,CG32817-RA,	FBgn0029524,FBgn0052817,	CG3176,CG32817,	2	.
CG12685-RA	CTGCTGAATGTTGGACGTGGAAGCTACTGCTGGACGGATTGTCATGTGCTGTGTCTGCTCCTCTG	65	+	chrX	4409737	4410074	4409737..4409783,4410055..4410074				0	no match
CG18659-RA	TCGGAACTCTCGCTAACTACGCATACTTACATACATATTGTACGCTGGACTTCCAAATCAAAAGACACA	69	-	chr2R	5010881	5010950	5010881..5010950	CG18659-RA,CG18659-RC,CG18659-RD,CG18659-RE,CG18659-RF,	FBgn0027561,	CG18659,	1	.
CG12723-RA	CGGCCATACCGCAGATACCCCAAATACCACAATTTCCCGGATTCCCTCAATTTCCCGGCTTTCCC	65	-	chrX	13084498	13084563	13084498..13084563	CG12723-RA,	FBgn0030459,	CG12723,	1	.
CG13700-RA	CGGAAGCCGGATCAAGATCGGACGAGACCATTGTCAACGATCCCAGTACTACCAGTTCAGCTCCATGTG	69	-	chr3L	18293503	18293572	18293503..18293572	CG13700-RB,	FBgn0036785,	CG13700,	1	.
CG8507-RA	TGCGCAAAACGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGGGCATCAAGGA	69	+	chr3R	5618193	5618262	5618193..5618262	CG8507-RA,	FBgn0037756,	CG8507,	1	.
CG6850-RA	TTTGGGATGGTCAGGCCACTTTACCCCCTCGAAAAGCTTTGGTGACTGCGTATGTGCGTTAGGTG	65	+	chr3L	18871241	18871306	18871241..18871306	CG6850-RA,	FBgn0014075,	Ugt,	1	.
CG10072-RA	GCGGCAGTTGCTTTCAGAAGGACATCCTCAATCTGATTTACATCTGCGAGAACCTCAATCTGCCCGAGG	69	-	chr3L	6953842	6953911	6953842..6953911	CG10072-RA,	FBgn0261445,	sgl,	1	.
CG10119-RA	CCCAACTCACCGCAGAGACTCACAGACTCCGAGCTGCACATTCAAACCACACACAGATCTGTTCTGCAT	69	-	chr2R	10458537	10458606	10458537..10458606	CG10119-RA,	FBgn0010397,	LamC,	1	.
CG11156-RA	GGTCCAACGTTAAGCGAGGAAGGTCAGAGCACTATTAACTTTGACAAGATTAGCTTCGAGGAGTCGGCC	69	+	chrX	13619659	13619728	13619659..13619728	CG11156-RA,	FBgn0002878,	mus101,	1	.
CG31874-RA	GGTGCCGTGCACATTCCTCTCGATCGAATGTTCGGTCCGCAAACCATGAGATCCCTGATGAAATTTCCA	69	-	chr2L	10191265	10191334	10191265..10191334	CG31874-RA,	FBgn0051874,	CG31874,	1	.
CG9360-RA	AGCTGACCATCAAGCCTGTCGGCGAAACCCTCTAGACTCTAGATTTCCCACTGGATGCTTCTGCTATTT	69	-	chrX	11657642	11657711	11657642..11657711	CG9360-RA,	FBgn0030332,	CG9360,	1	.
CG12493-RA	TTGGATCAGGAAAGATGGCAATCGATGATATGAAGGACCTATTGATCGTAAATGTTTCTGACCAAGAGG	69	-	chr3L	4753558	4753627	4753558..4753627	CG12493-RA,	FBgn0035571,	CG12493,	1	.
CG5508-RA	AGGACATTGGTTTTTCCGGGGAATCCTCGCAAATTGTGGCATATGCCTGTGACCTACTCGGCTCAG	66	+	chr3R	23757280	23757346	23757280..23757346	CG5508-RA,CG5508-RC,CG5508-RB,CG5508-RD,	FBgn0027579,	CG5508,	1	.
CG6124-RA	AGGAATGAGGACGACAACAATTTGATCTGTCTTCCGATTTGCGAACCCGAGTGCCTCAATGGGCTCT	67	-	chr3R	22921984	22922051	22921984..22922051	CG6124-RB,	FBgn0243514,	eater,	1	.
CG6683-RA	ACACGCGACTTATTGAGCTGGTTAGGGCTAATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCT	69	-	chr3L	8507865	8507934	8507865..8507934	CG6683-RA,	FBgn0035902,	CG6683,	1	.
CG6672-RA	ACCCACCGGTGTCCTTGTACAATGATCTGTATAGTTATCAGCGCATGTTGAATGTTTGTGGGCAGTGCG	69	-	chr3R	7038506	7038575	7038506..7038575	CG6672-RA,	FBgn0037875,	CG6672,	1	.
CG18231-RA	TGCTTTGGGAGAGCACAAATTTAAAAGGGAGGACTACCAACGGGCTTCTATGTGGTTTCGCGTGGCCAT	69	+	chr3L	18601336	18601405	18601336..18601405	CG18231-RB,	FBgn0036796,	CG18231,	1	.
CG16743-RA	GGCTCGAGCGTTATTAATCATTCCCTTAAGGTCAACAAGGAATACAACGAGGACGGTCACCACCAATCT	69	+	chr2L	10973152	10973221	10973152..10973221	CG16743-RA,	FBgn0032322,	CG16743,	1	.
CG1274-RA	TTCACGACTGAATCACGATGCAAACGAACAATCGCTAGAGTCCTCTGTACAGAAAATCCAAATCCGCAA	69	+	chr3L	3044010	3044079	3044010..3044079	CG1274-RA,CG1274-RB,	FBgn0040308,	Jafrac2,	1	.
CG3258-RA	TGGGTTGCAATACATCAGAATACCAGGAACCAACACCTACCAACTGCTGACGACTGACTTATTGGGCGA	69	+	chrX	355893	355962	355893..355962	CG3258-RA,	FBgn0000137,	ase,	1	.
CG5217-RA	TCCCGATACCGATCCTCAGCCGACAGTCAAGGATGAGCACGATGAAATGGAACGTGGCACAGATC	65	-	chr3R	15073115	15073180	15073115..15073180	CG5217-RA,	FBgn0038694,	CG5217,	1	.
CG9994-RA	GTGGCGCAATGAGTTCCTCAACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAA	69	+	chr2L	19434788	19434857	19434788..19434857	CG9994-RA,	FBgn0032782,	Rab9,	1	.
CG12391-RA	TGTCCCAACTGCGACTTGACGTTCTCGCGCAAACAATCCTATGTGCTGCATCGTAAGACTCACGAGAGA	69	-	chr2R	7035873	7035942	7035873..7035942	CG12391-RA,	FBgn0033581,	CG12391,	1	.
CG4477-RB	TCCGCTTGCCTCGTACATGCTGTATATCGATGTGCAGGTGATAGATTCCGAGGCATGTGCCAAATGGCT	69	+	chr3L	9244040	9244109	9244040..9244109	CG4477-RB,	FBgn0035971,	CG4477,	1	.
CG8166-RA	ACTCCTGCTGACGCTTAAGGAGATGGGACGTCAGGATGTGCTAGACATCATAGTTGAAACCATAGGCCC	69	+	chr2R	11254578	11254647	11254578..11254647	CG8166-RA,	FBgn0034013,	unc-5,	1	.
CR31490-RA	CGGATAGCTCAGTCGGTAGAGCATTGGACTTTTAATCCAAGGGTCCAGGGTTCAAGTCCCTGTTCGGGC	69	.	.	.	.	.	CR31489-RA,CR31486-RA,CR31490-RA,CR31197-RA,CR31487-RA,	FBgn0026164,FBgn0011904,FBgn0026162,FBgn0011905,FBgn0026163,	tRNA:K5:84ABb,tRNA:K5:84ABa,tRNA:K5:84ABd,tRNA:K5:87BC,tRNA:K5:84ABc,	5	.
CG8867-RA	GACGTGCTATCAATTAATTTCCATTGGTATCAGAGGGCGAATTTCTTAGAGATAGGATAACGCCGAGTG	69	-	chr2L	4955202	4955271	4955202..4955271	CG8867-RA,	FBgn0020906,	Jon25Bi,	1	.
CG5463-RA	TGGCCAATGATGGAAAAATGACTTTCCCCGTGATAACACCAGGCAAAAAAGTTTACTACAAGACCGCCA	69	-	chr3R	19955306	19955375	19955306..19955375	CG5463-RA,	FBgn0039153,	CG5463,	1	.
CG12560-RA	TTGTGAGAAGTTTAATTAAATATAATATTAATTTGGGTGCTTATGACGACAAGGGAAAGTTGGTT	65	-	chr2L	8008731	8008796	8008731..8008796	CG12560-RB,	FBgn0031974,	CG12560,	1	.
CG30500-RA	AGGCGAAGGGTATGATGCGCGGAAGAACTGGATGTGCGTTTCGGTAAAGTGATGTGATGGTAAAACAAA	69	+	chr2R	3223481	3223550	3223481..3223550				0	no match
CG5119-RB	TGCGCAGGGGAGGATTGCCAAGGACACACAATTAACACAGAAAAACAAAGCGAAAAATCTACGGCTTTT	69	+	chr2R	14032901	14032970	14032901..14032970	CG5119-RG,CG5119-RC,CG5119-RD,CG5119-RH,CG5119-RB,CG5119-RA,CG5119-RF,CG5119-RE,	FBgn0261619,	pAbp,	1	.
CG8443-RA	CGCAAAAAGTCGCCTAGCTCTAACACACATGTATGTTTTGCCAAACCATTTGCAAACCCGTCAAATGCC	69	+	chr2R	12081007	12081076	12081007..12081076	CG8443-RA,	FBgn0034087,	clu,	1	.
CG14478-RA	TGCAAAGGAGCTGACAGGACTGCTTGGAGACCGACGGACTGAAAGCGAGAAAGACAGACGATTGG	65	+	chr2R	13351942	13352007	13351942..13352007	CG14478-RA,CG14478-RB,	FBgn0028953,	CG14478,	1	.
CG13807-RA	ACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATGGAAACTTTGTGCCTGCATCCAAGGAT	69	+	chr3L	2263474	2263543	2263474..2263543	CG13807-RA,	FBgn0035323,	CG13807,	1	.
CG5107-RA	TGCCTTAAAATCCTTCGCAAGGCATTGAAAACGGTTCGAGGCACCAACTGTATTATCAAGGAGGTGACA	69	+	chr3R	21331199	21331268	21331199..21331268	CG5107-RA,	FBgn0039342,	CG5107,	1	.
CG18285-RA	AAAAGACAAATGCAAGGAAACTGCTGAACAAATTTTTGGGAAATCATTTCCATTTTGTCGGGCCAATGC	69	+	chr2R	11077048	11077117	11077048..11077117	CG18285-RA,CG18285-RB,	FBgn0013467,	igl,	1	.
CG32767-RA	GGATGGGGAATCGGATACAATAAAGAAGGAGAAAAAGAATCCACATAACAAAAACTTCTATCAAAGCAT	69	-	chrX	4968771	4968840	4968771..4968840				0	no match
CG7729-RA	GGCATGGCGTTCGTTACCTGACTTTGGAGTAAGCCTGTTCATCATTAAGTTCGACGGGCATCGGAAG	67	+	chr3L	17019544	17019611	17019544..17019611	CG7729-RA,	FBgn0036688,	Fit2,	1	.
CG1888-RA	GCCGTTGCACATGGAACAGCCGTCAGAGCAGGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAAT	69	-	chr2R	5433506	5433575	5433506..5433575	CG1888-RA,	FBgn0033421,	CG1888,	1	.
CG1878-RA	AGCCTGGGAAACTCAGAGGCTGGTTGGCTTAGGAAGCTGGGAAAAAAAATCGAACGCATTGGTCAGCAT	69	-	chr3R	26039272	26039399	26039272..26039290,26039348..26039399	CG1878-RA,	FBgn0000278,	CecB,	1	.
CG12052-RC	GACAACAGCGTGTCATCAGTGGGCTCCGAAATGGTTATTGAACCCAAAGCCGAATACGATGACGATGCG	69	-	chr2R	6419791	6419860	6419791..6419860	CG12052-RX,CG12052-RG,CG12052-RI,CG12052-RF,CG12052-RO,CG12052-RJ,CG12052-RL,CG12052-RR,CG12052-RY,CG12052-RP,CG12052-RN,CG12052-RK,CG12052-RQ,CG12052-RS,CG12052-RT,CG12052-RA,CG12052-RM,CG12052-RH,CG12052-RD,CG12052-RC,CG12052-RE,CG12052-RW,CG12052-RU,CG12052-RV,CG12052-RB,CG12052-RZ,	FBgn0005630,	lola,	1	.
CG32726-RA	CAGTTCTTCGGGTTAAATAAATTGAAAGCAAAACACGAGAAAACTGGCAAAATTTCCATTGACGGACGA	69	-	chrX	7319457	7319526	7319457..7319526	CG32726-RA,	FBgn0052726,	CG32726,	1	.
CG8188-RA	GGCATCAAGGTGCTAATCAATGAGAGCGATGTGACGGATATTCAGGCATTGATCGATGGACCTGCTGG	68	-	chrX	17595654	17595722	17595654..17595722	CG8188-RA,CG8188-RB,	FBgn0030863,	CG8188,	1	.
CG3937-RC	CGAGATGTACTCGGTGCGATTCTATCCACGCGAGAACGGAATCCATGCCATCCACGTCAAGTTCAACGG	69	-	chr3R	12918535	12918604	12918535..12918604	CG3937-RB,CG3937-RA,CG3937-RI,CG3937-RF,CG3937-RG,CG3937-RH,	FBgn0014141,	cher,	1	.
CG1273-RB	CCCAGTGTAAGCCTTTCCAAGCCGAACTTCATGAACCTCAAGGAAATCATTCTGCAGAGGAATACCCCC	69	+	chr3L	4276347	4276416	4276347..4276416	CG1273-RB,	FBgn0035522,	CG1273,	1	.
CG16886-RA	ATCCCAGGATACGAGGCTTCCCTGTACTGCTACGATTTGTGTTTGTGAACCTTGGATGGACGGAAGCGA	69	-	chr2L	13921204	13921273	13921204..13921273	CG16886-RA,CG16886-RB,	FBgn0028938,	CG16886,	1	.
CG16820-RA	CGTCCGTTACTCTGTCCAGTGGCTCGAATGAGGTGACACCCTGTAGCTTGAACTCTCCGGACTTGAATG	69	+	chr2L	13249130	13249199	13249130..13249199	CG16820-RA,	FBgn0032495,	CG16820,	1	.
CG32810-RB	CGAAATCCGAGTCCCCCGGAATTTGTAGAGTCGCAGAGTTCTGCTCCGTAGTTCTGCTGCTTGCTGTAC	69	+	chrX	1410244	1410313	1410244..1410313	CG32810-RB,	FBgn0025394,	CG32810,	1	.
CG10593-RA	CGCAAGGCCGGACAATATGCGCCCAACAATAGTCGTCTGACTCTGGACAACTGTGATATCTTTGGAAGC	69	+	chr2L	8524419	8524488	8524419..8524488	CG10593-RA,	FBgn0016122,	Acer,	1	.
CG9569-RA	CGCCGTGGTCGTGATGCCATTTGCTGTCTACTTTCTGGAGCCAGTGGAGCCCACAACATGTATAATGG	68	-	chrX	19920481	19920774	19920481..19920512,19920737..19920774				0	no match
CG14411-RA	CTCACATCGGTTACCGGCAATCTGCAGCTATCGACCCTGTCGTCGTTCTTTCCCTTCGGGAATCC	65	+	chrX	14729650	14729715	14729650..14729715	CG14411-RA,CG14411-RB,CG14411-RC,CG14411-RD,	FBgn0030582,	CG14411,	1	.
CG9499-RA	ACCGGATGTGTACGCAAACAACTCCTATGTGGACCTGGATGTGCACTTTCGCTTCGAGACCATTATGGT	69	-	chr2L	6352781	6352850	6352781..6352850	CG9499-RA,	FBgn0031802,	ppk7,	1	.
CG16873-RA	ACCTGGACCAGCCAACTTCCAAGATCCCAGAAATGTGGAGTTGCAGCCGAAACGACGAGAGTATCTCAT	69	+	chr2L	13970740	13970809	13970740..13970809	CG16873-RA,CG16873-RB,	FBgn0028936,	nimB5,	1	.
CG6618-RB	TATTGCGTGATGATCGAGGGCTTCACGATGCTCTATGTGCTGGGACTCATCGAGGCGGTTGTGTT	65	-	chr2L	12101528	12101593	12101528..12101593	CG6618-RA,	FBgn0029137,	Patsas,	1	.
CG4365-RB	GCCCCCAAACGGTCACACTCGCCCGAGCATAGCAGATTTGGAGAAAAAAACAACTTGCAAAAACTACGA	69	+	chr3L	20791763	20792256	20791763..20791818,20792242..20792256	CG4365-RB,	FBgn0037024,	CG4365,	1	.
CG31997-RA	AGATTTTCCGGGAATGTGCTTTGCTTCAACTCGATGTGCCACTGTTGAGCCTGGAAAGTCGTGGGACCT	69	-	chr4	175706	175775	175706..175775	CG31997-RA,	FBgn0051997,	CG31997,	1	.
CG32852-RA	CGCACATCGAAAGTTCCAGGCATCCAAAGCCAAAACTGAGCTACAGCAAACCAAAGACAGATTCCTGGG	69	-	chr3R	7468080	7468149	7468080..7468149	CG42317-RG,	FBgn0262081,	Csk,	1	.
CG6588-RC	GCCCGATGTTGAGTGCACCAACGGAATTATCCACGTCATCGACTACCCACTCCTGGAGGAAAAGGATGT	69	+	chr3R	12462750	12462819	12462750..12462819	CG6588-RA,CG6588-RE,CG6588-RF,CG6588-RC,CG6588-RB,CG6588-RD,	FBgn0262742,	Fas1,	1	.
CG12005-RB	GCAGCTTTCGCTTAATTCGGACAACGAACAGTTGCGTGTAATCGCTCACCACCTGCTCTGTAGCATGGT	69	+	chr3R	1060722	1060791	1060722..1060791	CG12005-RB,	FBgn0037301,	Mms19,	1	.
CG13690-RA	ACCAGGAGAAGTTGCTCAAACGTTTCCCCAGCTTTAAAATCACCGTGGCGAAAAAAGCTGACTCCACCT	69	-	chr2L	418948	419017	418948..419017	CG13690-RA,	FBgn0031252,	CG13690,	1	.
CG6893-RA	TGACCAGGGAAGAGGGCTTTACGAAGCTGTACAGCGGATGTTTCCTCTCCTTTATGCGGTCCAGC	65	+	chr3L	18688140	18688205	18688140..18688205	CG6893-RB,	FBgn0036807,	CG6893,	1	.
CG32648-RA	GGCCGGTTCTGGTAGTTCATGGAAATCGAGACTGCGCCAGTTCTCCGATTACTTTAGCTTCAGCTTTGA	69	-	chrX	12686268	12686337	12686268..12686337	CG42276-RB,CG42276-RC,	FBgn0259171,	Pde9,	1	.
CG5591-RA	CGCTCACTTCCGAAATGGGAGACGACTTCAATATCCTGGAGTACGCGGACCCAGAACTGGACGTCAATG	69	+	chr2R	19791018	19791087	19791018..19791087	CG5591-RA,	FBgn0034926,	CG5591,	1	.
CG14195-RA	GATTCTTTGCAGGTATCGGCTCCAGCTTGTACCTGTGGAAGACGCACGTCATTCTGGAGGCAGTG	65	.	.	.	.	.	CG14195-RA,	FBgn0030998,	CG14195,	1	.
CG9453-RA	TGCCGACCATCCTTTCACCTATGTCCTTGTGCATCAGAAGGATCTGCCATTGTTTTGGGGCTCAGTTGT	69	-	chr2R	2764500	2764569	2764500..2764569	CG9453-RB,CG9453-RA,	FBgn0028985,	Spn4,	1	.
CG8863-RA	GCGCTTGCAAGTGCCGAAGAACTCCCAAAAGCACCTTAAAACACCATCCAATTCACACTAGGAGGCCC	68	+	chr3R	9210603	9210671	9210603..9210671	CG8863-RA,CG8863-RB,CG8863-RC,CG8863-RD,CG8863-RE,	FBgn0038145,	Droj2,	1	.
CG8114-RA	AGTTGCACCTGTCGATAGGAAGGCTCGCAAATGTTGAAGCGTTTGCCCGAGCTGTCGATTGATCATGAT	69	-	chr3L	7889546	7889615	7889546..7889615	CG8114-RA,CG8114-RB,CG8114-RC,CG8114-RD,CG8114-RE,CG8114-RF,	FBgn0003041,	pbl,	1	.
CG30125-RA	TCCGGGAAAGCAGACCTCACAGTACGAGTTATTTCAGCAGCCAGATAACTTGAGAGCGGAAAATGGAGT	69	-	chr2R	14982741	14982810	14982741..14982810	CG30125-RA,	FBgn0050125,	Ir56a,	1	.
CG1014-RA	CACCCATCCAAAAAAGAAAAAAGAAATCTAGTCATAAAATTATAAAACGAACATTTATGCGTGTGACCG	69	+	chr3L	1478200	1478269	1478200..1478269	CG1014-RA,	FBgn0028567,	robl62A,	1	.
CG3919-RA	ACTGCGTCCCGAAATCAAGCACATGAACTTCCACCAGAAGCTGTACTTCAAGCGACGTGTGTACGA	66	+	chr3L	14405417	14405483	14405417..14405483	CG3919-RB,	FBgn0036423,	CG3919,	1	.
CG32038-RA	TCGCGGATATTATTCCCGGAGTTCAAGGACATGGGCTCAAGGTCACCTAAAATACCGATCAGACCATGC	69	+	chr3L	9445493	9445562	9445493..9445562	CG32038-RA,	FBgn0052038,	CG32038,	1	.
CG6995-RA	AGCAAGCGATTGGATTACTCCAGCAAGCGTAACGACTACAGCAGTTCTTCTGGATCCAAGCGTGGCG	67	+	chr3R	20647097	20647164	20647097..20647164	CG6995-RA,CG6995-RB,CG6995-RC,	FBgn0039229,	Saf-B,	1	.
CG11325-RB	ATCTCCCACTTTAAAGCCCATTTCTAGGCCGCAATTCATTTGATGTCAACACATCTGGTCATCAGCCAG	69	-	chr2L	6711771	6711840	6711771..6711840	CG11325-RB,	FBgn0025595,	GRHR,	1	.
CG10677-RA	AGCCACCAAAAAATGCCAAAAATAAAGTTGCCCTCTTTATCGCACAACCAAACACTACCACTATTGCAA	69	+	chr3L	5176122	5176191	5176122..5176191				0	no match
CG5157-RA	GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAAATCAACTCAGCTGCACCCA	69	-	chr3L	16129908	16129977	16129908..16129977	CG5157-RA,	FBgn0036575,	CG5157,	1	.
CG10109-RA	CGGATGATCTTCGATTGGAAATGTGTATTTTCTTCGTTCGACGAGTGTACGCCTATCATCGGCTGTTGC	69	+	chr2R	10384588	10384657	10384588..10384657	CG10109-RA,	FBgn0001332,	L,	1	.
CG30163-RA	GCAGTTCCAGCATGAGATCACGGTCAGCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCAT	69	-	chr2R	20550582	20550651	20550582..20550651	CG30163-RA,	FBgn0050163,	Cpr60D,	1	.
CG9308-RA	TGGGCAGCTTCACCTTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGATGTCCA	69	+	chr2R	17922645	17922714	17922645..17922714	CG9308-RA,	FBgn0034681,	CG9308,	1	.
CG8885-RA	CAGTGCAGCCCATCTTTATCACCGTTGACCCAGAACGTGACTCCAAAGAGGTGGTGGCCAAATACGTAA	69	-	chr2L	4968278	4968347	4968278..4968347	CG8885-RA,	FBgn0262467,	Scox,	1	.
CG10077-RB	TCCCTTCCATCGAAGTATGTTCCTCCTTTTAAACCAAATCAGCACCCTTCTATCATAAGCTTTGATCAT	69	-	chr3L	6945164	6945233	6945164..6945233	CG10077-RC,	FBgn0035720,	CG10077,	1	.
CG12673-RA	GGCCGGAATGACACTGGAGGCACGTCTGATATCCTACGACTGGGAGAATCAATTTGGCGAATTCCAGGA	69	+	chr3L	22232305	22232374	22232305..22232374	CG12673-RB,	FBgn0037153,	olf413,	1	.
CG30116-RA	CCAGCACCCCTTTTTGCCACTCTTTTTACGTAGTTTTGGCCATGCCTAGTTGTTTCCCAGTAGTCAACT	69	-	chr2R	14347216	14347285	14347216..14347285	CG30116-RA,	FBgn0028496,	CG30116,	1	.
CG7261-RA	GAATGCCTGTTAAGAGCTCTTCAAGAGTACACCCTGGACAACCGTGGTGACATCGGAGCGTGGGT	65	+	chr2L	2150366	2150431	2150366..2150431	CG7261-RA,	FBgn0027509,	CG7261,	1	.
CG5483-RA	GGCAATCTGCACGCCTATAGCACATCCACCTATGCCCACCTGTTTTCCTACATGCTCGATCCCAACATT	69	+	chr3R	16468822	16468891	16468822..16468891	CG5483-RB,	FBgn0038816,	Lrrk,	1	.
CG11219-RA	AGCGGCAATTGGAGCAATCGGATCAATCGGATCAATCTGCTCATCAGGAGATCACCGACACAAGGAAGA	69	-	chrX	8420133	8420202	8420133..8420202	CG11219-RA,	FBgn0024943,	PIP82,	1	.
CG8547-RB	GCCACCAAATGGAAATGGTTATCCACCGAATTCGACCACTTACAGCTACAAATACTCCTCGACCACCAA	69	-	chr2R	10150103	10150172	10150103..10150172	CG8547-RC,CG8547-RD,	FBgn0033919,	CG8547,	1	.
CG8500-RA	TGCATTCGCATTCATCGTGTGAGCCAAGTAACGCGTACATCGAAGGATATTTGAAGAGCATATGGTGCA	69	+	chr3R	5613671	5613740	5613671..5613740	CG8500-RA,	FBgn0037754,	CG8500,	1	.
CR12953-RA	ACCGGACGCAAGCAGATCAGAGGATTTGGATATCGCACATTTGTGGAGTACCTGCATCGCTACAATGCC	69	+	chr2R	11092699	11092768	11092699..11092768	CR12953-RA,	FBgn0033997,	Ir51a,	1	.
CG13999-RA	CAAGTCGACGGCTCTGACCATGGCAGATCCTCGCTTCAAGGAGGAGCATCTTGACTGGATCGCAG	65	-	chr2L	5955633	5955698	5955633..5955698	CG13999-RA,	FBgn0031753,	CG13999,	1	.
CG3981-RB	CGGAGTGCTTTTCCCGGCCGATTCGACCGACAGAACAAAATATGCAACAAAACATACATGCAATACACA	69	+	chrX	1986335	1986404	1986335..1986404	CG3981-RB,CG3981-RA,	FBgn0040395,	Unc-76,	1	.
CG16799-RA	GGAGCACGAAAGTTACTTGGACACCACCAAAGTAACGAAAAAGGGAAACGAAAGCAAGAACTATGGCCT	69	-	chr2R	16541115	16541184	16541115..16541184	CG16799-RA,	FBgn0034538,	CG16799,	1	.
CG7173-RA	GCTTCAATGGCAATGTGATCATGAAGGACACCAAGCCAGTGTACGCACCCATCCAACAGCATGCG	65	-	chr3L	21550326	21550391	21550326..21550391	CG7173-RA,	FBgn0037099,	CG7173,	1	.
CG3057-RA	AGGGCTGTAGGGCTAGTGAAAATTCAATTCAAAGGAGGTGCACATAGGTGGACTTTGAACCCTGCTGCA	69	-	chr2L	2769904	2769973	2769904..2769973	CG3057-RA,CG3057-RB,CG3057-RC,CG3057-RD,	FBgn0019830,	colt,	1	.
CG12052-RN	CCAGTGCGACTTCTGTCTCAAGTGGTTCAAGCGACGATCCCATCTGAATCGCCACAAGAAACTCCACGA	69	-	chr2R	6376464	6376533	6376464..6376533	CG12052-RY,CG12052-RN,	FBgn0005630,	lola,	1	.
CG13712-RA	AGAGGAGAGAGCAATCCGTGAGCTATGCCCTCTACCTCCACCGTAGGGAGTTGGGTCGTCCCAGG	65	-	chr3L	4709748	4709813	4709748..4709813	CG13712-RA,	FBgn0035570,	CG13712,	1	.
CG18178-RA	AGCGTGCTACTAAGAAGGTCCTCACCAAGGGTAACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAA	69	-	chr3L	9711404	9711473	9711404..9711473	CG18178-RA,	FBgn0036035,	CG18178,	1	.
CG12959-RA	TTGGCTCCTGGGGAAAGTGCAACATTTGCGACTCCATTAACGGGTACACTCACTAACGCCCTTCG	65	+	chr2R	11343856	11343921	11343856..11343921	CG34365-RE,	FBgn0262868,	CG43223,	1	.
CG14262-RA	CCTCTGGATGGCATCTTTCCTGCCTTCGACCTAGCATTCCGGCATAACATCATCGATGTGGAGCG	65	-	chr3R	23090463	23090528	23090463..23090528	CG14262-RA,	FBgn0039503,	CG14262,	1	.
CG12132-RA	CATCCAAGGGACCAACTCGATTAATTAGATGTGCAGTTATGTTGTGTGTGTTTGTAAATTATGACTTAG	69	-	chrX	9170086	9170155	9170086..9170155	CG12132-RA,	FBgn0040236,	c11.1,	1	.
CG13133-RA	CGGCAGAGGCACTACTATCTCTCCCACGACCTGGACGTATGTGCGCGGGACTTTCACTTGCGGAT	65	-	chr2L	10092068	10092133	10092068..10092133	CG13133-RA,	FBgn0032181,	CG13133,	1	.
CG12565-RA	GGATCGCCGACATCAGCTGTAGCCAGGAGCATACTACCAAATTTTCACCAAAATTGTCCCAAGTAGCCA	69	-	chrX	21313589	21313658	21313589..21313658	CG42343-RC,CG42343-RD,CG42343-RE,CG42343-RF,	FBgn0259245,	CG42343,	1	.
CR31625-RA	CCGTAACCAATGAAGTCCTCCTGAGGTGCGGTTATTGCTAGTTGAAAACTTTAACCAATACCCCGCCA	68	-	chr2L	21215090	21215158	21215090..21215158	CR31625-RA,	FBgn0003930,	snRNA:U4:39B,	1	.
CG14290-RB	ATTAGCAAAGCGGTAGCATCATGTCGATCAGGAGAGCTATGTCCACAACGGCCTCAAAGGAGTGG	65	-	chr3R	14753933	14753998	14753933..14753998	CG14290-RB,	FBgn0038662,	CG14290,	1	.
CG8556-RA	GAGCTGCTGAACCCATCGATTGCCCAGTAGTACCACCAGTACAGTAGCCTTCATCATGCAGGCCATCAA	69	-	chr3L	7427596	7427665	7427596..7427665	CG8556-RA,	FBgn0014011,	Rac2,	1	.
CG4537-RA	GAAATATGCGGTCAATCGGTAGCAAACAATCGATATTAATATCAATGGAATGGTCACTCTGTTTTTGCA	69	+	chr2L	9890803	9890872	9890803..9890872				0	no match
CG5834-RA	CAAAGTCTGCTGCAGGAGTTCTTCCACGGCAAGAACCTCAACCTATCCATCAACCCAGACGAGGC	65	.	.	.	.	.	CG31359-RA,CG5834-RA,CG6489-RA,	FBgn0013278,FBgn0051354,FBgn0013279,	Hsp70Bb,Hsp70Bbb,Hsp70Bc,	3	.
CG6640-RA	GCCTTCTCATCCAACTCGGCCTACCTGACGGAGGCATATCCCATGGGAGTTAAGCAACACTTTATCGGT	69	-	chr3L	10089141	10089210	10089141..10089210	CG42825-RA,	FBgn0262007,	CG42825,	1	.
CG40053-RA	GGCATCAAACCAGTGGCGAAAATTGTGATGAGGGTGTGCGATATCAGCGGTCGATCGATAGGAAATGGA	69	-	chr3L	24003552	24003621	24003552..24003621	CG40053-RA,	FBgn0058053,	CG40053,	1	.
CG30360-RA	TGATCCGGATGACTCCTCCTATCTGAAGCACATCTACACTCAGGATCTGCGCGAAACGGTGGAGATGGT	69	+	chr2R	4353477	4353546	4353477..4353546	CG30360-RC,	FBgn0050360,	Mal-A6,	1	.
CG7293-RA	AACTCGCAGAATTGGAGGGTCAACTTGTTCGCGGCGGAAAAAACCTGCTGGACACGTACAGTGAG	65	+	chr3L	11790533	11790598	11790533..11790598	CG7293-RA,	FBgn0004381,	Klp68D,	1	.
CG9438-RA	TCATCAGCCGGTTCAGGGTATCCGTCTGCGATACGACAGAGATCCCACTGAAGTATAGTCCCATGTCCA	69	-	chr2R	2667397	2667466	2667397..2667466	CG9438-RA,	FBgn0000473,	Cyp6a2,	1	.
CG8989-RB	CCCAGCGATATCCATCCGTGTATATCCGTCAAGAGTCCACGACACAGCACAATCGTATCCTGGCCAATT	69	-	chrX	9048918	9048987	9048918..9048987	CG8989-RB,	FBgn0004828,	His3.3B,	1	.
CG3926-RA	ACCGAGAGAGACAGCCCATAAAAACCAACTCCCATCACCAAACAGTAGTAACACCCATTCTACCTGGCA	69	+	chrX	6423002	6423071	6423002..6423071	CG3926-RA,	FBgn0014031,	Spat,	1	.
CG5061-RA	CAAGTGTGAGGGATCCACTCTGACCGTCAAGGGCAAGGTGAACAACATCGTCTTCGACTCCTGCAA	66	-	chr2L	1152393	1152459	1152393..1152459	CG33979-RB,CG33979-RA,	FBgn0261458,	capt,	1	.
CG6743-RA	CGGCGAGATCTCTGCAATCGATCAGCGCAAGATCTCAGCATTGGAGTGGCTAATCCATTTGCCGGAG	67	-	chr2L	10734160	10734227	10734160..10734227	CG6743-RA,	FBgn0027868,	Nup107,	1	.
CG5791-RA	GTGGTGAATGGCGTCTGTCTGACTTGTCCCAATCCGAATGGTGAACCCGTCTACCTGGATGGCCA	65	+	chr3R	17913056	17913190	17913056..17913081,17913150..17913190	CG5791-RA,	FBgn0040582,	CG5791,	1	.
CG8207-RA	GCTGGGTCGGCAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCATCCCGAGAGATTG	69	-	chr2R	11565421	11565490	11565421..11565490	CG8207-RA,	FBgn0034035,	CG8207,	1	.
CG4739-RA	AATGACGCCCACTACGGTTTTGCAGAACATTTCGGAGCTCCACTGATCACTCTGAGCAGCTTGGG	65	+	chr3R	6981083	6981148	6981083..6981148	CG4739-RA,	FBgn0040257,	Ugt86Dc,	1	.
CG13043-RA	GCAAGAAACTCAAACCGATCACTCCCAATTCCAAACAGTCAATACAGACCTAACCCATTTCCAAA	65	-	chr3L	16298891	16298956	16298891..16298956	CG13043-RA,	FBgn0036600,	CG13043,	1	.
CG14167-RA	GACTCGACGTCTTCGGGATGGAGTCTTCGACGAGTGTTGCCTGAAGTCGTGCACCATGGATGAGG	65	-	chr3L	9794749	9794814	9794749..9794814	CG14167-RA,	FBgn0044050,	Ilp3,	1	.
CG13793-RA	AGCTGAATGACTACGAGATTTCATGGCATTTATCGGGCCTGTTCGCTTTAGTTTGGGCCACGATTGCAT	69	-	chr2L	7718416	7718485	7718416..7718485	CG13793-RB,	FBgn0031935,	CG13793,	1	.
CR40375-RA	TGAGTTACAAACTCATGAACCATCCAGCTGAAATAAGCCAGTACCCCTCTGCTGATACGGGTATCGTCA	69	-	chrU	1353287	1353356	1353287..1353356				0	no match
CG4500-RA	GCTTGGTTTTCATGGGCTACTTGGGACTGCCGGATAAGACTGAGGAAACGGTCAAAGAGGATGGCT	66	+	chr2L	14028583	14028649	14028583..14028649	CG4500-RA,	FBgn0028519,	CG4500,	1	.
CG10038-RA	TTGTCTACGCTTTGCTGGAGAAAAACGGTCTTAGTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGC	69	-	chr3R	8175622	8175691	8175622..8175691	CG10038-RA,CG10038-RB,	FBgn0038013,	CG10038,	1	.
CG9351-RB	ATTTGCACTTGGAGATATCGAAATCTTTGCACATTATCGTGCTGTTCGAAATCCAGAGTCTTGAGATGT	69	+	chr3R	9518616	9518685	9518616..9518685	CG9351-RB,CG9351-RD,	FBgn0024555,	flfl,	1	.
CG8411-RA	GGCTTCAACTTTGGCATGGATCTCATCCTGATCATGGACTCGCGTAGACTGAACATTCGTCGGCACCA	68	+	chr2R	4615449	4615517	4615449..4615517	CG8411-RA,	FBgn0005695,	gcl,	1	.
CG5196-RB	TCTTGGCTTTCAGGCATCATCAAGTGCATAACGCTGACAACGCTCTATATGAACTCGATGTGGTGGCCG	69	+	chr3R	8234963	8235032	8234963..8235032	CG5196-RB,	FBgn0038039,	CG5196,	1	.
CG5073-RA	GGAAAAAAAACGAGAAACAGGAAATGTATGTACTACGGGGAGATGACAAACAAAAACATTAACGGAACA	69	+	chr3R	11199620	11199689	11199620..11199689	CG5073-RA,	FBgn0038331,	CG5073,	1	.
CG18087-RA	TGCGGAGAACCACAATGGATGATTTAGACACCAATCACTTTTAAAGATCACAAAAATTCTTCCTTAATA	69	+	chr3L	11503259	11503328	11503259..11503328	CG18087-RA,	FBgn0003377,	Sgs7,	1	.
CG30428-RA	CGCCCAGCGAACTAAAGCTAACACGGAAGCATTATTGGCTTTGAGTACGCAGATAGCCGATTTAATGCA	69	+	chr2R	21141855	21141924	21141855..21141924	CG30428-RA,	FBgn0050428,	CG30428,	1	.
CG13279-RA	CCAGCGGAAAGGTGCTCGGATCGGTAAAGTTTGTGCCACAGACGTCAAGGATCAAAAGGACTCGG	65	-	chr2L	16790636	16790701	16790636..16790701	CG13279-RA,	FBgn0000406,	Cyt-b5-r,	1	.
CG31918-RA	GAACGCGTGCCGAACTAAGCTTACTGGACCAACCGAACTTCAAAGACCGGCGATACATGCTCCATTCAT	69	-	chr2L	5056815	5056884	5056815..5056884	CG31918-RA,	FBgn0031678,	CG31918,	1	.
CG5212-RA	TGATTTGAAATTATGAAAGCGAGGCATACAAACGCAATGATCAGCAAGCAGCACACATCAACCATACGA	69	-	chr3R	19686622	19686691	19686622..19686691	CG5212-RB,CG5212-RC,	FBgn0025574,	Pli,	1	.
CG6332-RA	GGAAATCCACAGAATGACCATCCAAGGACTGAAGTGTGACCTCAGCCCGACGGTGACCACTTGTCTG	67	+	chr3R	17840536	17840603	17840536..17840603	CG6332-RA,	FBgn0038921,	CG6332,	1	.
CG1389-RA	AAACATCGGTGGGAGTTACATTCCCAAAACCGCTGAAGCTCCAAAGGATCGGCCAAAACGGAAGC	65	-	chr2R	3593859	3593924	3593859..3593924	CG1389-RA,CG1389-RB,CG1389-RC,	FBgn0003733,	tor,	1	.
CG1925-RA	GGGAACTCCAGCAAATCGAGCACTGGAACAAACTCCTTGAACACCACTTCTAATGCCAATCAATACTCG	69	+	chr2R	3688210	3688279	3688210..3688279	CG1925-RA,	FBgn0002891,	mus205,	1	.
CG5662-RA	ACTTCAACAATTCCATAAAAAGAAACCCACAGTCAAAATTTTCGGCACTTTAAGCATGGAGTTGG	65	+	chrX	15104433	15104498	15104433..15104498	CG5662-RA,	FBgn0030620,	CG5662,	1	.
CG5641-RA	AGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCTGACAACTTGTCAACTGGAGGAAGTG	65	-	chr3R	8254491	8254617	8254491..8254506,8254567..8254617	CG5641-RA,	FBgn0038046,	CG5641,	1	.
CG9317-RA	GTCGCACCCCCAATATGCGCTTAAAGACCATCCTAATCACGCTGAGTTGGTTTGCCAATGAGACGGTTT	69	-	chr2L	20728585	20728654	20728585..20728654	CG9317-RB,CG9317-RA,	FBgn0032879,	CG9317,	1	.
CG31925-RA	ATGCGCAATTATAACATCCCAACAATGCATTCAGTGGTGTGTAAGTCTTCATGTTAAATAAGCCGAAAA	69	-	chr2L	1473841	1473910	1473841..1473910				0	no match
CR31853-RA	TGGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACACTCT	69	.	.	.	.	.	CR32880-RA,CR32908-RA,CR32914-RA,CR32881-RA,CR32877-RA,CR32999-RA,CR31853-RA,	FBgn0043021,FBgn0003938,FBgn0003933,FBgn0043022,FBgn0003936,FBgn0003934,FBgn0003935,	snRNA:U5:38ABb,snRNA:U5:63BC,snRNA:U5:14B,snRNA:U5:38ABa,snRNA:U5:35D,snRNA:U5:23D,snRNA:U5:34A,	7	.
CG3295-RA	GCATCTACTTTTAAGCCACATCTATGTATTCACCTTATGATAATCACCACTGCTTATATGACCAGGCTC	69	-	chr2R	16903351	16903420	16903351..16903420	CG3295-RA,	FBgn0034573,	CG3295,	1	.
CG10628-RA	TCTGGGACGTCCCGGGGAGAATCGCACTGTAAATCTGGACCTAAAGCTAATAGCAGATGTGGGTCTCGT	69	-	chr2L	19758026	19758095	19758026..19758095	CG10628-RA,	FBgn0032818,	CG10628,	1	.
CG6629-RA	TGCTCCCAAGGATACCAAAAAGGAACCCAAGAAGGATGCAAAGGACAAGAAGAAAGACGAGGAAGGCAA	69	-	chr3R	6940493	6940562	6940493..6940562	CG6629-RA,	FBgn0037860,	CG6629,	1	.
CG6600-RA	TGCTCCGCTACTTTTGGCTATATTCACCCCATTCGTGGTACCCGAATCAGCTCGTTGGTTAGTCTCCCA	69	+	chr3L	6063459	6063528	6063459..6063528	CG42269-RE,	FBgn0259164,	CG42269,	1	.
CG12105-RA	CATGCGAGGTAATTTTTTAAGGATCTCAACTCGACATTCAGTTACGTTATAGTGAGTGATTCGTCCTAG	69	-	chr3L	1610862	1610931	1610862..1610931	CG12105-RA,	FBgn0035241,	CG12105,	1	.
CG13985-RA	ACTCGGTGGAGAGAGCTTGGAGATCCTGATGGCAGATGCACCTATGACAATGATGTGTGGGCACT	65	+	chr2L	6297773	6298079	6297773..6297792,6298033..6298079				0	no match
CG8144-RD	GCTCGTTTTCCACACACGAATTCCCAGCTAACGCGCAGCCATTTTGACAGTGATTTTATTGGTTTGGCT	69	+	chr3R	5262605	5262674	5262605..5262674	CG8144-RI,CG8144-RD,CG8144-RC,	FBgn0261552,	ps,	1	.
CG6754-RB	TTGTCATTCGCTCCCAGGAGGAAGTGGATGCTTCTCTTGAGGATTCTGTGAACAAGCATGGCGGC	65	-	chr3L	9713752	9713817	9713752..9713817	CG6754-RD,CG6754-RE,CG6754-RF,	FBgn0261530,	nbs,	1	.
CG30173-RA	TGCCAGCATAAAGAGAATCACCGACTTTCTGAACTCTTTCGATATGTCCTGTCGCTCCCGTCTGGCGGT	69	-	chr2R	19915619	19916177	19915619..19915647,19916136..19916177	CG30173-RA,	FBgn0061198,	HSPC300,	1	.
CG12785-RA	TCCTTAAGCTACGATCTGGGGTCACCATTTGTTTCATTTAGCCAGCCAAACTTTAGCTTGCCCCGCGCA	69	-	chr3R	12094697	12094766	12094697..12094766	CG12785-RA,	FBgn0261286,	Mat89Ba,	1	.
CG12529-RA	AGGAGATGGTGCAGAACCTGATGACCATACGCTTCGGCAACAAGATCCTCAGCTCGACGTGGAAC	65	+	chrX	19565269	19565334	19565269..19565334	CG12529-RA,CG12529-RB,	FBgn0004057,	Zw,	1	.
CG30463-RA	AGCTGGTAAGCCCTAGACTAAGTCTAAGTTGGAAAGCATTTGGTGATAGCCTTTGTTTCGCCCAAGACC	69	-	chr2R	12561548	12561617	12561548..12561617	CG30463-RA,CG30463-RB,CG30463-RC,CG30463-RD,	FBgn0050463,	CG30463,	1	.
CG13201-RA	AATTGGACAACATTTCCAGGGTGAAGAGTTTGCTGGGACCACTGCGGGAGTCCATGTTCCTCACC	65	-	chr2R	7247380	7247445	7247380..7247445	CG13201-RA,	FBgn0001276,	ix,	1	.
CG11271-RD	TTTGCATTCGGTACAGTCATGCCACAATCACTACAATGAACACTCCACAGACCTCATTAGGAGCCGACG	69	+	chr3L	13026278	13026347	13026278..13026347				0	no match
CG6726-RA	TGGGATTCAGTTTCGACGAGGGAATCTCTAGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGA	69	+	chr3R	18918191	18918260	18918191..18918260	CG6726-RB,CG6726-RA,	FBgn0039049,	CG6726,	1	.
CG12384-RA	TAATCTCTTTGATCTTTTGTTGAAATTCTATGAGTCCTCTCAATGGTATTGAAATCGCCTTTGAATGCG	69	-	chr2R	7245517	7245586	7245517..7245586	CG12384-RA,CG12384-RB,	FBgn0033624,	CG12384,	1	.
CG12935-RA	TCGGTGCGTTTTCTTATCTTGAGAAAGGGTGGTCAGAGCGTTTCCTTTGTGACCTACGGTCCCTT	65	+	chr2R	6697796	6697861	6697796..6697861	CG12935-RA,	FBgn0033547,	CG12935,	1	.
CG3277-RB	ACCTTCGACGCCCTGTACAAGGTGCTCAGTCCAAAGACTACCTACGTGGACATCAACAGTCTGAGTGAT	69	+	chr2L	3316978	3317047	3316978..3317047	CG3277-RC,	FBgn0031518,	CG3277,	1	.
CG8593-RA	TGTTACCCTTTGCCAAACCGAAAAGCCCACAGAGAACCCCTACCTTACTGTCAACCGAAACCAGAGCGA	69	+	chr3L	7345655	7345724	7345655..7345724	CG8593-RA,CG8593-RB,	FBgn0019662,	qm,	1	.
CG9528-RA	AAACATTCGAATGCAGAACGTTTTTGATTGCACACTAATTACCCCGTCATTTGTACGCCCTTAATTGCT	69	-	chr2L	6449058	6449127	6449058..6449127	CG9528-RA,	FBgn0031814,	retm,	1	.
CG9760-RB	ACATCGGGTTCATGGTGCCTGATCTTCTACAGCTCTTCGTCCCAGTTTGGCTGCTACGACAGACAC	66	-	chr3L	12151171	12151237	12151171..12151237	CG9760-RC,	FBgn0036259,	CG9760,	1	.
CG7809-RA	CAGACCACCGACTATTGAGCCACCGGCACAGAGCTTGTTCAAGACCTACTTCAATCCGGATGAGGC	66	+	chr3L	19919393	19919459	19919393..19919459	CG7809-RA,	FBgn0036919,	Grasp65,	1	.
CG31172-RA	CCGCTGAGCCAGTGTGAGTAATTAACTAAGGCCAGTTAATGGATGGGTCGGTACGCCATGACGTATGCG	69	-	chr3R	20496518	20496587	20496518..20496587				0	no match
CG33002-RA	CGCCAGGGCCAGAACATCTACAAGAAGTTCTTCAATGTTGTGCCCGAAAATCAGCATCAGCGATTTCGT	69	-	chr2L	4459021	4459090	4459021..4459090	CG33002-RA,	FBgn0053002,	mRpL27,	1	.
CG17697-RA	TAGCTCTAAGTCGAGTTGTATTTTGTAGGATTTCATTGCTATCGCGGTATACGAACCTGTAGCACCTAT	69	+	chr3L	14360686	14360755	14360686..14360755	CG17697-RA,	FBgn0001085,	fz,	1	.
CG9226-RA	GTGCCCGTTCACCTAGACGGCATGCACGTTATAGAGATGCCCAGTGACCTCTACTCCGCAGATACG	66	-	chr2L	6127020	6127086	6127020..6127086	CG9226-RA,	FBgn0031782,	WDR79,	1	.
CG17082-RB	TGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGTCAGCCTCAGAGAATGAATGCGGTCGCCT	69	+	chr2R	644186	644255	644186..644255	CG17082-RE,CG17082-RB,CG17082-RD,CG17082-RA,CG17082-RF,CG17082-RG,	FBgn0039994,	CG17082,	1	.
CG1108-RA	GGCACGGCATACATAGGGTGGTCCTCTCCAGATTATCTCACGCACAAGCACCTACCTATCTGTACCGGT	69	-	chr3R	3350713	3350782	3350713..3350782	CG1108-RA,	FBgn0015574,	alpha-Est6,	1	.
CG31142-RA	GGCGCTCCACTCAACGTTATATCCGAAAAACAAAAGACCTACGTGGACGACCTCCTAGGAAAACTGGCA	69	+	chr3R	19755479	19755548	19755479..19755548	CG31142-RA,	FBgn0047114,	CG31142,	1	.
CG7973-RA	CCGGAGTTGTGTGCAGATAGGTGTGGCGAAATGCTATGGAAACTCCAGAAGAATAGGTCGGAAAGCCCC	69	-	chr3L	15521490	15521559	15521490..15521559	CG33983-RA,	FBgn0053983,	obst-H,	1	.
CG33136-RA	AGCCAGTGCGTCTCAAGTCGACAATATTGCTTAACGAATACCGAAAACTGTACGAAACGCCGCGAAAAA	69	-	chr2R	14552731	14552800	14552731..14552800	CG33136-RA,	FBgn0053136,	CG33136,	1	.
CG10188-RA	ACCGGAAGCCTGATCTTGGGCAATGAGGGGAACTGGAAATGTACTTCCATACCTGTTGAACTGTACCTA	69	-	chr2L	19502968	19503037	19502968..19503037	CG10188-RB,CG10188-RA,	FBgn0032796,	CG10188,	1	.
CG16779-RA	TCCCGCGGTGGAGAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCGAGCTTCAGTTCGAAGG	65	-	chr3R	5294110	5294399	5294110..5294126,5294350..5294399	CG16779-RA,	FBgn0037698,	CG16779,	1	.
CG7668-RA	TGGGTGGCGAGTTCTGGCTTGGCCTACAAAAATTGCATAAAATGACGACACATCGACGAATGGAACTAT	69	+	chr3L	19997186	19997255	19997186..19997255	CG7668-RA,CG7668-RB,	FBgn0036929,	CG7668,	1	.
CG7100-RE	TGAAGTTGGCAGAACTCTCTACGTAAATGGAAACTAAGAACTAGAAAACTAAAATAGGGGAAGGGAAGT	69	-	chr2L	17650116	17650185	17650116..17650185	CG7100-RE,CG7100-RH,CG7100-RA,CG7100-RF,CG7100-RC,CG7100-RB,CG7100-RD,CG7100-RG,CG7100-RI,CG7100-RJ,CG7100-RK,CG7100-RL,	FBgn0015609,	CadN,	1	.
CG17618-RA	GCGACAGAGCTTTTCAAGCAGAGTGTAAGTGCATACAGGTTGAACCCAAAACCGACGCATATTTTTGCG	69	+	chr3R	18552799	18552868	18552799..18552868	CG17618-RB,CG17618-RC,CG6982-RC,	FBgn0040587,FBgn0039014,	CG17618,CG6982,	2	.
CG7091-RA	TGCAGCAGTACGAACCTACAACCTTGGGATCCTCGTAGCAGAATGGAGAAAACTGCATCACCAAGTGCT	69	+	chr3R	8806052	8806121	8806052..8806121	CG7091-RB,	FBgn0038099,	CG7091,	1	.
CG6173-RA	CCGTTCCAGTCCCAATTCCGTGTTGGACGACTCCAGAAATGTCTTTACCTTCACCACGCCTAAATGTGA	69	+	chr3R	19972976	19973045	19972976..19973045	CG6173-RA,	FBgn0039155,	kal-1,	1	.
CG10228-RA	ACGAGTTGGAGCAGGGTGATGCAAACACCGATACGGATGCGGAATTGAATGGCGAGAAGCAGGAG	65	-	chr2R	10749465	10749530	10749465..10749530	CG10228-RE,CG10228-RD,	FBgn0022063,	Pcf11,	1	.
CG16963-RA	GACCCATCTAATGCATACAGCAAACTCTGCCAAGAATCTAACCCAAGCTCTAACGCTTTCCATTCCGCT	69	+	chr2L	11946590	11946659	11946590..11946659	CG16963-RA,	FBgn0005664,	Cry,	1	.
CG16758-RB	TAGAGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTCCCAACTACGAGACCATCGCC	65	-	chr3L	2499861	2499926	2499861..2499926	CG16758-RB,CG16758-RD,CG16758-RE,CG16758-RF,CG16758-RG,	FBgn0035348,	CG16758,	1	.
CG31208-RA	GCGACTTGTGCTGAGCATTCCCAACGTTGCAGTTATCTTGTGCTACCACATTTTTCGAGGGCCAGAAAT	69	+	chr3R	15947041	15947110	15947041..15947110	CG31208-RA,	FBgn0045471,	Gr92a,	1	.
CG9125-RA	ACTGCGCGGTATTTTGCGGCAGATAATGTGCCTGCAGTATGATAATCGCTCATTCCGCGTCAAGGC	66	-	chrX	16696862	16696928	16696862..16696928	CG9125-RA,	FBgn0030793,	CG9125,	1	.
CG32523-RA	TGTGGACCACACTGTGGACTGTTTTGCTATTGCTTTTATGTGGTGTCCAGGTAATACTGGGACAGGACG	69	+	chrX	21088931	21089000	21088931..21089000	CG32523-RA,	FBgn0052523,	CG32523,	1	.
CG32559-RA	CATGCCGCGTACTGTCCCACAGAATTCCCAGAACTCGCAGAACTCAACGCCAAATCCAGCCACAC	65	+	chrX	17628991	17629056	17628991..17629056	CG42270-RD,	FBgn0261570,	CG42684,	1	.
CG9323-RA	TTTTCCTGCTCGACTCCACAATGGTTTTTCCCATGGCACTGATCATTTTCGGAGATGGCGTGGAAGC	67	-	chr2L	20755040	20755107	20755040..20755107	CG9323-RA,	FBgn0032883,	CG9323,	1	.
CG10327-RB	TGACACTGGATGGCTAATAACACAATTGATAAAACACACTTCAAAATAAATTCTGCGCCAAAGCT	65	-	chr2R	19746856	19746921	19746856..19746921	CG10327-RB,CG10327-RC,CG10327-RA,CG10327-RD,CG10327-RE,CG10327-RF,	FBgn0025790,	TBPH,	1	.
CG7814-RA	GGCAAACTAAGGTTGTGGAACATACCCGACAAAAAGGTGGCACTGTGGAATGAGGTAGATGGCCAGACA	69	+	chr3R	25699399	25699468	25699399..25699468	CG34133-RB,CG34133-RC,	FBgn0083969,	CG34133,	1	.
CG10237-RA	CCATCGAACGAGGCCAACATCTTCAAGCACAACATCCTTACCGTCTTCCCCAACCGAGATCAACTGGG	68	-	chr2L	19436838	19436906	19436838..19436906	CG10237-RA,CG10237-RB,CG10237-RC,CG10237-RD,	FBgn0032783,	CG10237,	1	.
CG5921-RB	GCCACATCGCCAATCCATTGATTGTCGGCTACTCGCAAAGGTCAAGCACTTCAATTGTTATCGATGGCT	69	.	.	.	.	.				0	no match
CG8292-RA	GGAGGCGTCCTTTAGCAAGTACCTTGATCCCTCCTCCACCACATACAATCTGTCGTATGTGCGCTGG	67	-	chr2L	8217333	8217400	8217333..8217400	CG8292-RA,	FBgn0032004,	CG8292,	1	.
CG14641-RA	AGCCGGACGATCCGCTATGTGAGCAAAACATCAAGGACAGGTACTACGGACGCAACGATCCTGTG	65	-	chr3R	57337	57402	57337..57402	CG14641-RA,	FBgn0037220,	CG14641,	1	.
CG17683-RD	CGGGGTGGGTTTGTTACGCGGAGAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGAT	69	+	chr2R	19232	19301	19232..19301	CG17683-RA,CG17683-RB,CG17683-RD,CG17683-RE,CG17683-RC,	FBgn0262115,	CG17683,	1	.
CG7940-RA	AGCTGGACAAGTTTGAGCGAGCTCTACAGCAACAGCAGATTGGTACATTGGAGGACTTGGATTCCCTCA	69	+	chr3R	14012572	14012641	14012572..14012641	CG7940-RA,	FBgn0038576,	Arp5,	1	.
CG8231-RA	CCGACCCATTCAATTTAACCAAGTTAATGCACCGCATGCTACTCAACCCGCGTCTCTCAAAGCCACACA	69	+	chrX	15642820	15642889	15642820..15642889	CG8231-RA,	FBgn0027329,	Tcp-1zeta,	1	.
CG10272-RB	CGCCTTCGCACGACTTTGTCTGGCCCAACGAAACTATCAGCTGCCCATAGTAATCAAAATCTGAACGGA	69	+	chr3R	2271306	2271375	2271306..2271375	CG42803-RB,CG42803-RC,CG42803-RE,	FBgn0261972,	gpp,	1	.
CG11098-RA	AGCACCAGGGAGAGAATGCCAGCACAGTTGAGACCCAGACGCTGATGAAGAACGAAATCCAAACTCTGA	69	+	chr2L	6653466	6653535	6653466..6653535	CG11098-RA,CG11098-RC,	FBgn0031842,	Tango1,	1	.
CG31751-RA	CGGATACGTCCTGAAAATCCTCAACTCACTGGACTCTAAGAAAGAGGACTTCGTGGATGCCCAAAACCA	69	+	chr2L	18682303	18682372	18682303..18682372	CG31751-RA,CG31751-RB,	FBgn0086909,	CG31751,	1	.
CG4966-RA	TGGAGTACCACTAACACCCCTGATGGCCAAACTATCTGTTCTGGCTCTAAGCGAAACAACGCCCATCGA	69	+	chr2R	13576726	13576795	13576726..13576795	CG4966-RB,CG4966-RA,CG4966-RC,	FBgn0034261,	HPS4,	1	.
CG4568-RA	TCAGCACTGGAGGCATTGCATATAAGGAATGGTCAGATTACGAATCCCTCGGGACAAACCCAACAGCGA	69	-	chr3R	19028726	19028795	19028726..19028795	CG4568-RA,	FBgn0011596,	fzo,	1	.
CG1216-RA	CAAACAGGTGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATACCCCACCCACAA	69	+	chr3L	201498	201567	201498..201567	CG1216-RB,CG1216-RA,CG1216-RD,	FBgn0035107,	mri,	1	.
CG2789-RA	CGAAAAACAAGTAATTTTGGGTGTCTTTCATGCAAATTGCAGGGCTTTCCGACCTATCGAACCAGGGCT	69	+	chr2L	560327	560396	560327..560396	CG2789-RA,	FBgn0031263,	CG2789,	1	.
CG16947-RA	CTGTCCCTGGTCACCGATGAACCATCCTCGGCGTGATATCCACCCGATTCAAACCACAGCATCAG	65	-	chr2L	6459498	6459563	6459498..6459563	CG16947-RA,	FBgn0031816,	CG16947,	1	.
CG10474-RA	CATGGGATTGCAGTACGAATCACTAAACTCTGAGGACAACATAGAGTCATTGAAAAATTGGACGA	65	-	chr2R	15173697	15173762	15173697..15173762	CG10474-RA,	FBgn0034427,	CG10474,	1	.
CG18593-RA	ACGGCCGCAGATCAGGGACAAGATGCTTGCCGATCTCGAAGACAAAAGCTCGGACTTCTACTGAG	65	-	chr3L	11985251	11985316	11985251..11985316	CG18593-RA,	FBgn0036237,	viaf,	1	.
CG1333-RA	GGGCATCTGGGGTCCCAACGTAAAGGAGTTTAAACGACGCTTTAGTCCAGAAACCACAAGCGGTGAAGG	69	+	chr3L	4172682	4172751	4172682..4172751	CG1333-RB,	FBgn0261274,	Ero1L,	1	.
CG13332-RA	ACAGCGGGATCATCCAGAAGCAAATCTGGGAGACGAGCATCAACAAGGATGTGCTGGAACGTCAGCTAA	69	+	chr2R	9413131	9413200	9413131..9413200	CG13332-RA,	FBgn0033851,	CG13332,	1	.
CG1883-RB	ATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATTACTCGTTATTGCAGGCATTAGAAGCCAT	65	-	chr3R	26033653	26033718	26033653..26033718	CR34629-RA,CG1883-RB,	FBgn0082983,FBgn0039757,	snoRNA:Psi28S-2626,RpS7,	2	.
CG32984-RA	GAGGACGCTTTCTCTTTTGTACAATACCAGAAGACTTCTCCGAACTTGGATATAGATCGAAAGGCTAGT	69	+	chr2L	8965530	8965599	8965530..8965599	CG32984-RA,	FBgn0052984,	CG32984,	1	.
CG15107-RA	ACGCTCAATAAGTAGTACAGTAGGCATTCGTTGAAAACAAATTCTTGAGTAGTGTGTACCATATACCAA	69	-	chr2R	14858929	14858998	14858929..14858998	CG15107-RA,	FBgn0041702,	CG15107,	1	.
CG4329-RA	AGCTCATCCGTGACCTGATGAAGGAGATGCAGGACAAGAAGGCCGAGTTCATTGAGTACTGCCGC	65	-	chr2R	18497874	18497939	18497874..18497939	CG4329-RB,CG4329-RA,	FBgn0034745,	CG4329,	1	.
CG14052-RA	GGGGGGCCACCAGAAAAAAAAGAAAATCGTGATCCACGTGCCCATTCACAAGAAAATCGAAACGCACAT	69	.	.	.	.	.	CG14052-RA,	FBgn0029606,	CG14052,	1	.
CG13297-RA	ACAGGGCCTTAAGGTTCGCAAGTTGTCCGGAAAATCTCTTGCATCTCTGGCCGGATAAGACACCTCAGA	69	-	chr3L	6149807	6149876	6149807..6149876	CG13297-RA,	FBgn0035685,	CG13297,	1	.
CG6751-RA	TCACAGTCTGGGATCTAGACATACAGGACGCTATCGAGCCCACATTTAAGCTGGGTTCCAAAGGCAGCC	69	+	chr2R	6763942	6764011	6763942..6764011	CG6751-RA,	FBgn0033562,	CG6751,	1	.
CG12342-RA	AGTACGCCAACGTGATACGACGCTATCCGAACTCCAGTGAGACCTCAAATCCCTCCCAGAACTCCAACA	69	-	chr2R	6704671	6704740	6704671..6704740	CG12342-RA,CG12342-RB,	FBgn0086898,	dgo,	1	.
CG4556-RA	ACTCGCAAGCGAATGAGAGCAATCGGGATCTCCATTCCCTGCTGAGTGAGATATCCCGGCGGAAG	65	-	chr2R	20312308	20312373	20312308..20312373	CG42383-RA,	FBgn0259729,	CG42383,	1	.
CG3124-RA	CCCCAACCAAATGATGAACAGCTCCAATATGTGGCAATACAGTCAGCCTATGCAGAGTCACCAGCCGCA	69	-	chr2R	19170813	19170882	19170813..19170882	CG3124-RA,	FBgn0034840,	CG3124,	1	.
CG12714-RB	AAGGCGCAAGGAAAACATGCGGAGGCCCTTTACAGCTTTGAATCGCAATCACTACTTCGTCATCGGC	67	-	chrX	13005825	13005892	13005825..13005892	CG43313-RA,	FBgn0263005,	CG43313,	1	.
CG17192-RA	GCCCATTGGAAAAGCCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAGACCTTGC	69	-	chr3R	22843157	22843226	22843157..22843226	CG17192-RA,	FBgn0039472,	CG17192,	1	.
CG10078-RB	ACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATGCAGGACATGCGAATATCAATGACCAACTGG	65	-	chr3L	6906029	6906094	6906029..6906094	CG10078-RB,CG10078-RA,	FBgn0041194,	Prat2,	1	.
CG12818-RA	AGGGGTGGATCTCTTTGCCGACTACAAGGCGAGAGTGAAGACCACTAACAAAGACTTGGAAAAGGAGCA	69	+	chr3R	6157681	6157750	6157681..6157750	CG12818-RA,	FBgn0037809,	CG12818,	1	.
CG1330-RA	CCCTGCGTACACCGTCGCCCAATTGTAAACACCCATGCGACCGCTGTTATTTTGAACCCTTGTTTTGTT	69	-	chr3R	2516639	2516708	2516639..2516708	CG1330-RA,	FBgn0004779,	Ccp84Ae,	1	.
CG8318-RC	GGGCTGTTTTGACAAGAAGGAGACCATAGCCGAGGTCATGATGAAGACAAGGGAAAAGCTGGAGTGGCA	69	+	chr3R	21816949	21817018	21816949..21817018	CG8318-RB,CG8318-RC,CG8318-RD,	FBgn0015269,	Nf1,	1	.
CG2168-RA	AGTCTCAGCGCAAAACATGTTATGCTCAGCAATCGCAAGTCCGAAAGATTCGTGCTCGCATGACCGACA	69	-	chr4	87185	87254	87185..87254	CG2168-RA,CG2168-RB,CG2168-RD,CG2168-RE,CG2168-RF,	FBgn0017545,	RpS3A,	1	.
CG3698-RA	TGGCCAAAGAGGTTTGAGTTTCGTTTCGTTTACGCTGTTAAATTGTTATTGTTCGTTTTCGAAGTGCTT	69	-	chr3L	20790376	20790445	20790376..20790445	CG3698-RA,	FBgn0037023,	CG3698,	1	.
CG11381-RA	GCAGTCCCACTCGTATCAGCTGCCTTCAACGTTTACTACTCACACGGAATGGACCCAGGACAAGGAGC	68	+	chrX	1099030	1099098	1099030..1099098	CG11381-RA,	FBgn0029568,	CG11381,	1	.
CG10986-RB	CCATTTTCGTTAAGTTGAAACAATTGCCTCCTAAGAGAATGAAAAAAACCTAAAAAAATTATCGCTGCG	69	-	chrX	13621874	13621943	13621874..13621943	CG10986-RB,CG10986-RC,	FBgn0001087,	g,	1	.
CG13586-RA	GGCAACCAGGAAACGATCGACCCGAGGAATGTGTACCACTTGAAGAAACAACTAAGCTAACATCTAG	67	+	chr2R	20445780	20445847	20445780..20445847	CG13586-RE,CG13586-RF,CG13586-RD,	FBgn0035023,	itp,	1	.
CG14846-RA	CATTCACCGCAACCCCTTGTGCATCCTCGAAAAGTGCTGCCCATCCACCATCATGCCTTGAAGAG	65	-	chr3R	10234654	10234719	10234654..10234719	CG34389-RC,CG34389-RD,	FBgn0086901,	cv-c,	1	.
CG10521-RA	ATGGCTGGCACGACACCTACTCTCTGCTGGGTCTTTTGTGGCAGTCCAATTTCGATATGTGTCCC	65	-	chrX	14582683	14582748	14582683..14582748	CG10521-RA,CG10521-RB,CG10521-RC,CG10521-RD,CG10521-RE,CG10521-RF,	FBgn0015774,	NetB,	1	.
CG6831-RA	ACGTGTTTATTTGCCATTAAATTGCCCATATATATTTATACGAGATGTGCGAACTTATTCAGGCAAGTT	69	+	chr3L	8567131	8567200	8567131..8567200	CG6831-RA,CG6831-RB,	FBgn0260442,	rhea,	1	.
CG1021-RA	TGTATCAATTATCAACACGAACACACCCGAGAAACTGTACAAAATATTCATATACCCTATCACACACAC	69	-	chr3R	2215074	2215143	2215074..2215143	CG1021-RF,CG1021-RG,CG1021-RD,CG1021-RE,CG1021-RH,	FBgn0037443,	CG1021,	1	.
CG9866-RA	CGGATCGCCGGGAGTCATGACAGCCAAGCGTTTGAATGAACTGCTAATGGGAAAGGCGAAGAAGGAG	67	+	chr2L	2379687	2379754	2379687..2379754	CG9866-RA,CG9866-RB,	FBgn0031420,	CG9866,	1	.
CG2157-RA	GCTCTTGGTGGCTATGGATCGGGACTTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTG	69	+	chrX	10764295	10764364	10764295..10764364	CG2157-RA,	FBgn0030244,	CG2157,	1	.
CG15710-RA	CGGATGAATCCTACGAAGGGGCGTACACCATCACCAAGACCTTCAATTGCGTCTTTTGTCGCACGGAGT	69	-	chr2R	12235454	12235523	12235454..12235523	CG15710-RA,	FBgn0034120,	CG15710,	1	.
CG17153-RA	AGTCTGGAAGTGCACCCAATACGACCAGCGAACACAATTCATTTGGCAGTCAACTTGACGAACCATTGA	69	+	chr3L	12112187	12112256	12112187..12112256	CG17153-RA,	FBgn0036248,	ssp,	1	.
CG1558-RA	GCTGCAGTGCAATATGGACGATCACTACCTATTCATGCGGAACACCATGATCAACAACGCTATACACCA	69	-	chrX	11465843	11465912	11465843..11465912	CG1558-RA,	FBgn0027259,	Kmn1,	1	.
CG8264-RA	CGGTGATCTGGATGCCATTGTAAATACCAAGCGTTTCGTGCCAGACAAGCAGTTCTCCGGTGCCT	65	-	chrX	8998677	8998742	8998677..8998742	CG8264-RA,	FBgn0004856,	Bx42,	1	.
CG31717-RA	AGGATGTTCAGGTGTCGAAGCATTTTGTAGTAGCCGTCTCCAATCTGTCGTTCTTCAAATCCCTGCGGA	69	+	chr2L	10250926	10250995	10250926..10250995	CG31717-RA,	FBgn0051717,	CG31717,	1	.
CG12963-RA	GAAATGAACTTGTGTGATCTTATTGAGTACATACCTATTTAAGTTCTAGACATTAGGAGTCGCATATTG	69	+	chr2R	11449819	11449888	11449819..11449888	CG12963-RA,CG12963-RC,CG12963-RD,CG12963-RE,CG12963-RF,CG12963-RG,CG12963-RH,CG12963-RI,CG12963-RJ,CG12963-RK,	FBgn0034031,	CG12963,	1	.
CG7961-RB	GAGGCCCAGCAACTCTTAAGGATCTGCGCTGAGTATATCGTTGGCCTGAAGATGGAGACTGTGCGC	66	-	chr3L	1641661	1641727	1641661..1641727	CG7961-RB,CG7961-RA,	FBgn0025725,	alphaCop,	1	.
CG3851-RA	CGTGCAATCGGTTCTATGTAGCAGATCCCAATTGCGTTAAACAAATGCCAAAGTCAAATAGCAGAGGAA	69	-	chr2L	3604721	3604790	3604721..3604790	CG3851-RA,	FBgn0002985,	odd,	1	.
CG5000-RA	CGATGGATCCCATATGCTGGACAATAAGGTGGTTGACGAGAACCTCTGCCTGAACGGAATGAACGCGCA	69	+	chr3R	11885312	11885381	11885312..11885381	CG5000-RD,CG5000-RE,CG5000-RF,CG5000-RB,CG5000-RC,	FBgn0027948,	msps,	1	.
CG17110-RA	AAAGTCAACAACTGATAATGCCATTAAGTCAATCCACACTCAGACTTCAAACCAAACAGCACGGT	65	+	chr3R	18919289	18919354	18919289..18919354	CG17110-RA,	FBgn0039050,	CG17110,	1	.
CG2217-RA	CGGGGAAAACTTTCACTTAGGCGAATATTGCGAAACTATTGGGCTGCACAACCCGTTGACACAAATCGC	69	-	chr3R	26245979	26246048	26245979..26246048	CG42740-RA,CG42740-RB,CG2217-RA,CG2217-RB,	FBgn0261704,FBgn0027544,	CG42740,CG2217,	2	.
CG32274-RA	ATTTTCCTGGGAGCGGAAGAATCACATGCCGACTGCCTTTCCGGAAGATATAGGGGTTCCTGTGC	65	-	chr3L	3335678	3335743	3335678..3335743	CG32274-RA,	FBgn0052274,	Drs-l,	1	.
CG7710-RA	ACAGCCAACTTTCGCACTCTTGCTGAACGTCTAAGCCGTTTATGTTTCCTTTCTGCCGCCAAGTTTTGA	69	+	chr3R	14521341	14521410	14521341..14521410	CG34282-RA,	FBgn0085311,	CG34282,	1	.
CG6180-RA	CAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACCGGTGTGAATGTCAATTATTCAGCTGT	69	+	chr2L	12707811	12707880	12707811..12707880	CG6180-RA,	FBgn0032453,	CG6180,	1	.
CG6889-RB	GGCAAAACAGCGAACTCCTAGCCAAGTAAGTTTGAAACGGAAGCAAAACAAAATTCTATATTAGCGTAA	69	+	chr3R	12085604	12085673	12085604..12085673	CG6889-RA,CG6889-RB,	FBgn0040071,	tara,	1	.
CG6796-RA	GGCCATGACATACGGTTTAGGCAAGACATACACTCTCTCACCAGCCTTCCGAGCGGAGAACTCCAAGTC	69	+	chr2R	12890310	12890379	12890310..12890379	CG6796-RA,	FBgn0034177,	CG6796,	1	.
CG32508-RB	CGACCCATAGAAGTGTTGCCCCAAGGACAAGATCAAAGTGTGAGGAGAACAGCAAATGGACAGCACCGG	69	-	chrX	20642926	20642995	20642926..20642995	CG34358-RD,CG34358-RC,CG34358-RA,CG34358-RE,CG34358-RF,	FBgn0085387,	shakB,	1	.
CG13397-RA	CCATGCTGGACGACCCTTTAATGGTACCGCTTTCAAGCTGAAAGTCTCGCACGAAATCGAGCTGCCTTT	69	-	chr2L	8409282	8409351	8409282..8409351	CG13397-RA,	FBgn0014417,	CG13397,	1	.
CG2202-RA	TCCTGGGCTTCACACGGCTCCAACTCATCCCGAACATCAAACTATTCCAGTGTAGACTTAAGCTTTCCT	69	+	chrX	10745848	10745917	10745848..10745917	CG2202-RA,	FBgn0030240,	CG2202,	1	.
CG2849-RA	CACACTAATGTTTCTGACAAGCTTTGGAGACTTTCCGTTACAAATAGTTATTTTCTTTGCCCTGGAACA	69	-	chrX	3599183	3599252	3599183..3599252	CG2849-RB,CG2849-RA,CG2849-RC,	FBgn0015286,	Rala,	1	.
CG31183-RA	TGTTTGTGATAATAAGTTAAACCCAAGTTGAACAAGTTAGTGGTTAGTCAATAGTCGACCGAATCAAAT	69	-	chr3R	11683925	11683994	11683925..11683994	CG31183-RA,	FBgn0051183,	CG31183,	1	.
CG18768-RD	GGCATGTCAAAGGACGTGTCGGTAGATTCCCTAAACATGTGCGTGGAGCAAACAACCAGTTCGGC	65	-	chr3L	7649835	7649900	7649835..7649900	CG42734-RJ,CG42734-RS,CG42734-RR,CG42734-RF,CG42734-RO,CG42734-RL,CG42734-RK,CG42734-RQ,CG42734-RT,CG42734-RP,CG42734-RU,CG42734-RI,	FBgn0261788,	Ank2,	1	.
CG17572-RA	TCGAATTACCGGAAACCGAAGTTCTGAGCCCTTACCTACAAATAGTATTACAACTATAGAGTATAAAGT	69	-	chr2L	19074046	19074115	19074046..19074115	CG17572-RA,	FBgn0032753,	CG17572,	1	.
CG15530-RB	TCCAGAGGAGTATCCCTATGTTGTGGAGATACCCGAGCAGGAAGAAAAAAAACCGCAGAAGGGTAGCCA	69	+	chr3R	26005684	26005753	26005684..26005753	CG15530-RA,CG15530-RB,	FBgn0039752,	CG15530,	1	.
CG13314-RA	ATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAACAGGTGTACAAGCTCTTCAAGAACG	67	+	chr3L	8976113	8976180	8976113..8976180	CG13314-RA,CG13314-RB,	FBgn0035949,	CG13314,	1	.
CG8791-RA	TTTGGCAAGGCCACTATTCAGATTTGGAACGAACCTCCATCGACGTCTAGCACGATGACGCTCCG	65	+	chr2R	3816986	3817051	3816986..3817051	CG8791-RA,CG8791-RB,	FBgn0033234,	CG8791,	1	.
CG7986-RB	GGGTGACGATCCCGTGGGACCCTCATCCGCTTAGACAAGGTCAATGATCAAAAATGAGAGATGCAGCGA	69	+	chr3L	8183334	8183403	8183334..8183403	CG7986-RA,CG7986-RB,CG7986-RC,	FBgn0035850,	Atg18,	1	.
CG1298-RA	CGCGTCGGGAAAGGTACAAGCGCTTAAACGAAATCAGCAATCGGGAGATCAGTGAATACGGAGATGAGT	69	+	chr2R	1559913	1559982	1559913..1559982	CG1298-RA,	FBgn0033032,	kune,	1	.
CG1550-RA	ACGACATCTTCCGTCTGCTCTTCCTAGACGAAGAAAACGACGATAGCTTCCGGGTACTGACGCCAGACA	69	-	chr2R	3697615	3697684	3697615..3697684	CG1550-RA,	FBgn0033225,	CG1550,	1	.
CG8597-RA	GGTCGCGATGCCATACAGAATCTGAACGGTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGC	65	+	chr3L	7333324	7333389	7333324..7333389	CG8597-RB,CG8597-RA,CG8597-RC,CG8597-RE,CG8597-RD,	FBgn0011640,	lark,	1	.
CG7768-RA	GGTCGTTGAGGGAATGGATATCGTCCAGAAGGTAGAATCTTACGGTTCACAAGATGGGAAGACCAGCAA	69	+	chr3L	14211874	14211943	14211874..14211943	CG7768-RA,	FBgn0036415,	CG7768,	1	.
CG14538-RA	GGCAAACGCTGGAGTACCTCTCGGGGTTGAGTCTGCGTAAGAAGTACAACTACGAGGGCTTCTCG	65	+	chr2L	7756530	7756595	7756530..7756595	CG14538-RA,	FBgn0031943,	CG14538,	1	.
CG13255-RA	GCGTTGCGACCCGTCTATTTACCTGAACCTGAGCTGTCTGGACTACACTCTTTAACATTTCCTTACGGA	69	+	chr3L	20831333	20831402	20831333..20831402	CG13255-RA,	FBgn0040636,	CG13255,	1	.
CG14023-RA	CCGGCGACGTACTCAACATTGTACAGCTCAGCAACGATTTGGGATTGAGTTTTCAGGAGTTCGCCAGCG	69	-	chr2L	5317268	5317337	5317268..5317337	CG14023-RC,CG14023-RD,CG14023-RE,	FBgn0031698,	CG14023,	1	.
CG31787-RA	TCGAGAAGAGCGGGAATTGCGTGATCTTCGCCAGGAAATGTTAACCGACTACCACTTTGACGTGGCCTA	69	-	chr2L	18285182	18285251	18285182..18285251	CG31787-RA,	FBgn0051787,	CG31787,	1	.
CG8642-RA	GCACCCACGACAAGATGAAGTTCTCCACCTACGACCGGGACAATGACGCCTTCACGCACATGAAC	65	-	chr2R	4500588	4500653	4500588..4500653	CG8642-RA,	FBgn0033312,	CG8642,	1	.
CG6320-RB	GCAAATCCGTCCCTAGTTATGCAAACGGCCCATTTATCGGCCTAGAGCTAGCCCTAGATCCCAGCATGA	69	-	chr2L	11165035	11165104	11165035..11165104	CG42403-RH,	FBgn0259822,	Ca-beta,	1	.
CG8635-RA	TTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAGCGGTCCATTTATGTGGACATGCGCGACG	67	-	chr2R	4518671	4518738	4518671..4518738	CG8635-RA,	FBgn0033317,	CG8635,	1	.
CG17203-RA	ACCAAAGTCCACAGCCACACCATGAATGCTGCTACGGATTTTGCCTTGTCCTGCATCCATCACTCGAAA	69	-	chr3R	16212380	16212449	16212380..16212449				0	no match
CG15186-RA	CGGCATTGTTTTTACGGCTAAGTGAATTATACTGAATTCCACAAAGGAGTGTACATTTCTAAATTCTCA	69	+	chr3R	2320385	2320454	2320385..2320454	CG15186-RA,CG15186-RB,CG15186-RC,CG15186-RD,CG15186-RE,CG15186-RF,CG15186-RG,	FBgn0037448,	CG15186,	1	.
CG15249-RA	GGCTCTGGTTTTGGTACAAAGTAAGGATCCGAGTTCCCAGGATGCACCGCATATACGACACAAGCGCGG	69	-	chrX	9783061	9783130	9783061..9783130	CG15249-RB,CG15249-RC,	FBgn0030161,	CG15249,	1	.
CG14013-RA	AGCCCATGCCACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACGGATAGCGATA	69	-	chr2L	5553118	5553187	5553118..5553187	CG14013-RA,	FBgn0031720,	CG14013,	1	.
CG33099-RA	CGGGTGGGTCAGCAACTCCACAAGGCTTTCACCGAAAAGGGAATTGCGTTTCTGGTTAACCATGGGATA	69	-	chr3R	18355772	18355841	18355772..18355841	CG33099-RA,	FBgn0053099,	CG33099,	1	.
CG4649-RA	TCTGAATACACACTCTTATCTATAAACCGAATAGTTCTTATTTTTGGAGCCTTGGAGCAATTCCGAGCT	69	+	chr3R	6703782	6703851	6703782..6703851	CG4649-RA,	FBgn0022359,	Sodh-2,	1	.
CG2670-RA	GCAGCAGGTGCAAAAGTCAACGGAAATTGCTTCCATTCAGAATGCCACACTCAAACAACGAATGCAGGA	69	+	chr3R	3734702	3734771	3734702..3734771	CG2670-RA,CG2670-RB,	FBgn0024909,	Taf7,	1	.
CG16985-RA	ACAGGTCAAGTACATTCAGTTCGACAAGGAAAAACTGGATTTTTAAAACAATTTTTGTAGATCGTCAGA	69	+	chr3L	2600065	2600134	2600065..2600134	CG16985-RA,	FBgn0035355,	CG16985,	1	.
CG8349-RA	AAGGTACTGGGAAAGTATATGATGACCTTGGAGGGATTTCTATGCGAGCTAGCACGCAGGGAGGC	65	+	chr2L	8216183	8216248	8216183..8216248	CG8349-RA,	FBgn0032003,	CG8349,	1	.
CG14515-RA	CTCGAACGAGTGGATCGGCGAGTGGGTGCAGAGCGAGAACACCAAGACCATTCCAGAGTGCTCGG	65	+	chr3R	25023636	25023701	25023636..25023701	CG14515-RA,	FBgn0039648,	CG14515,	1	.
CG6878-RA	TGCTGGCATTTGACTAGAGTTACTAAACAACCACAACCTTAAGCCCTACTCCAATCTTGTTTAAATTAC	69	+	chr3L	15155468	15155537	15155468..15155537	CG6878-RA,	FBgn0036488,	CG6878,	1	.
CG6784-RA	GGCAACCTTTTCTATACCAAGGAAAGTTGCGTGGAATTTTGTGGCAAATACGACTGGAAGAAGGTGCGA	69	+	chr3R	19199138	19199207	19199138..19199207	CG42827-RC,CG42827-RD,	FBgn0262009,	CG42827,	1	.
CG32479-RA	TGCGATGTTTGCCTTCATGATATTCGAGTCCTTAACTTTCTTTTCTCAGACCTAGAGCATTTAGTTTGT	69	+	chr3L	893233	893302	893233..893302	CG32479-RA,	FBgn0052479,	CG32479,	1	.
CG10933-RA	CGGGCGCTGTATCGTCTTGTACACCTTTATAGCCAGGGACGAGAATGATTTGTCTGTGGAACGGGGTGA	69	+	chr2R	13611844	13611913	13611844..13611913	CG10933-RA,	FBgn0034264,	CG10933,	1	.
CG32344-RA	TGGGACCGACGTTCAGCGCATGGGTAATGTTCTGACAAATCGCCTTCCTCCAATGAAACACTCCC	65	-	chr3L	321292	321357	321292..321357	CG32344-RA,	FBgn0052344,	CG32344,	1	.
CG7930-RA	TGGAACGAATACTCCGTGACGATCGCTTCGCAAGATTAGGCTGATCAGACAGATCCCATTGGCAAAGAT	69	+	chr3L	17039266	17039335	17039266..17039335	CG7930-RA,CG7930-RB,	FBgn0010424,	TpnC73F,	1	.
CG17240-RA	ACTGGTGGACACTCTAATTTTCAATGCCGAAGTAAGACCTATCCAACTGGCCGATAGTGCACCCGCAGC	69	-	chr2L	2250857	2250926	2250857..2250926	CG17240-RA,	FBgn0011832,	Ser12,	1	.
CG1809-RA	GTGTATGCCTCGGGACCCTATGCCCAGTACTTCAGTGGCAACTACGAGCAAAGCAATATTCCGGC	65	+	chr2R	5451194	5451259	5451194..5451259	CG1809-RA,	FBgn0033423,	CG1809,	1	.
CG7231-RA	AGCCGTTAAATTTTCGAACTAAAACTGAGTGTCGGGGGTGTAGTGTGGCCAGTTCTTCTAGCGCTCGTT	69	+	chr2L	7984166	7984235	7984166..7984235				0	no match
CG8368-RA	CCGCAGAAATTATGGAGCAAGTGACCAAGAGGCTGGATGTTGTGCAAAAGGAAGTGTCCGAACTGCTGC	69	+	chr3L	6600694	6600763	6600694..6600763	CG8368-RB,CG8368-RA,	FBgn0035707,	CG8368,	1	.
CG2865-RA	GGAGCTGGTCGATTTCGACATGAACCAAAACCAAAAGGATTTCGAGGTGATCATGGACGCCTTGAGGCT	69	-	chrX	2175725	2175794	2175725..2175794	CG2865-RA,	FBgn0023526,	CG2865,	1	.
CG17732-RA	CCCAACCCCTTGAGCCCAGAAACGACCATTTCGGAATAAACTCGGTCATGTCCAACTACGTGGCTAGCT	69	+	chr3L	19977196	19977265	19977196..19977265	CG17732-RA,CG17732-RB,	FBgn0036923,	CG17732,	1	.
CG12809-RA	TCCCTTTCAGTCATTCGATCAGCGTCGATTCTACTCTCTTGGGGAATTTTACCTATCGCAGCACTTGGA	69	+	chr3R	5899012	5899081	5899012..5899081	CG12809-RA,	FBgn0041105,	nerfin-2,	1	.
CG31816-RA	CGAGTGGTGGTTAAGGCTGCGAAAAACATCGAAAAAGTTCTGCAAAGTTGGGGCATAGAAGCGACAAAA	69	+	chr2L	16543117	16543186	16543117..16543186	CG31816-RA,	FBgn0051816,	CG31816,	1	.
CG6209-RA	TGTATTGTTCACGCCGAGAAGATTGTCTACCAGAAGAAGTTCGCTGAACAAATCGCGATTGAGGAGGCT	69	-	chr2R	9550232	9550301	9550232..9550301	CG6209-RA,	FBgn0033862,	CG6209,	1	.
CG18642-RA	CACATTACGGTCAGCATCAAGACACCCGACGATGTCACTCTGCACGCCTTCTGGGTTACCCAACC	65	+	chr2L	2988534	2988599	2988534..2988599	CG18642-RA,	FBgn0025109,	Bem46,	1	.
CG32541-RA	CCACGGGCGCGAAACCCAAGAAGAACTTCTGGACCATGAAACCGTGATGCTACAAAAAGGCGCTG	65	+	chrX	18907334	18907399	18907334..18907399	CG32541-RA,CG42506-RA,	FBgn0052541,FBgn0260232,	CG32541,CG42506,	2	.
CG4927-RA	GCAGCATCCCATATATTCGTGCCTGAAGCAAGTGATTGGCATCACCTCCTATGGATTGGTCTGCGGTGT	69	+	chr2R	12461180	12461249	12461180..12461249	CG4927-RC,	FBgn0034139,	CG4927,	1	.
CG7181-RA	TGGGTGCTCTACCACATCCGGGACTACAAGGGCGACAAGTAATCTGCATACGAGACCACACATAGTTAA	69	-	chr3L	21532144	21532213	21532144..21532213	CG7181-RA,	FBgn0037097,	CG7181,	1	.
CG8173-RA	CCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCACTTGAAATGTGCACCACTTCACTG	67	-	chrX	17602583	17602650	17602583..17602650	CG8173-RA,	FBgn0030864,	CG8173,	1	.
CG7189-RA	TGGACATAGGTTCCATTGGCAAGAGTTCAGTGTCTGGTTCGGGGAAAAACAAAGTAGCACCAGTGGCCC	69	-	chr3L	8299181	8299250	8299181..8299250	CG7189-RB,	FBgn0035870,	Gr66a,	1	.
CG14871-RA	ATGTGGCACAAAGCACTTTCGCACATGCTGCTTTAACTACCTTCGCAAGCGATCCGACCCCGATG	65	-	chr3R	11310752	11310871	11310752..11310796,11310850..11310871	CG14871-RB,	FBgn0038343,	CG14871,	1	.
CG32191-RA	GATTCGGTGCTCACCTACCGAGAACTGGACGACCTAGATCCCCGCGACAGTCGCTATGCAGTTAC	65	-	chr3L	17800328	17800393	17800328..17800393	CG32191-RB,	FBgn0052191,	CG32191,	1	.
CG3748-RB	CCAGCGTCTTACAGATGCCCAACTGAGTACCATGTGCAAAAGCCACGGTCTCATTCTGGGTCCCATAAC	69	+	chr2L	9343041	9343110	9343041..9343110	CG3748-RB,	FBgn0032110,	CG3748,	1	.
CG4676-RA	TGGTGGCTGTCTTTGTGCCCGTGACATACATCTTCCATGTGACCATTGTTATGCCGGAACTGTTTGCCA	69	+	chr2R	9123586	9123655	9123586..9123655	CG4676-RA,	FBgn0033815,	CG4676,	1	.
CG11043-RA	AGTGCGGCCACTACTTCATCCTCAAGAATGTCCCACCCGTTTAGATCGATCACACAGAGCGCTGTACTT	69	+	chr2L	6560007	6560076	6560007..6560076	CG11043-RA,	FBgn0031831,	CG11043,	1	.
CG1221-RA	CGACGGTCTAAACACAGATCCATCGTAGTTGCAGTGTAGGCAATTGGCATTTTAAAGTAGTTTACAACT	69	+	chr3L	269798	269867	269798..269867	CG1221-RA,CG1221-RB,	FBgn0027111,	miple,	1	.
CG12290-RA	TTTGCCCACTGAGGTCTAAACGGGGGGTTATGATAACTATACATATAGGAAGGTAAACAAACACTAAAC	69	+	chr3R	22058804	22058873	22058804..22058873	CG12290-RA,	FBgn0039419,	CG12290,	1	.
CG14237-RA	ACCGAGCACACCATGAAGACAGGACAACTGGCACTCCGAATCCTAGCGATAAGCCTATGCATTTGGG	67	+	chr3R	22282586	22282653	22282586..22282653	CG14237-RA,	FBgn0039428,	CG14237,	1	.
CG31705-RA	TCTCGGCGGAATCTATCGTCAAGGATGCGCATAGTATGGCAGAGCGAACTTTTGGACACTTTAGCTTCA	69	-	chr2L	11523593	11523662	11523593..11523662	CG31705-RA,CG31705-RB,CG31705-RC,	FBgn0028490,	CG31705,	1	.
CG8222-RD	ACCGTCAACGAGAAGGAGCAACGAAGGTATTAGGACGTCCCGGAGCCATTAGATTAAGTTTAGGACCTC	69	-	chr2L	8221512	8221581	8221512..8221581	CG8222-RA,CG8222-RB,CG8222-RD,CG8222-RE,CG8222-RF,CG8222-RG,CG8222-RH,CG8222-RI,CG8222-RJ,CG8222-RK,CG8222-RL,	FBgn0032006,	Pvr,	1	.
CG2446-RA	GCGTATCCGGTGGAAAGACATATGTATGTAGTGCAGTTGAGTCGACATAGAGACATAGAGCAACATTAC	69	-	chrX	11605385	11605454	11605385..11605454	CG2446-RB,CG2446-RD,CG2446-RC,CG2446-RE,CG2446-RA,CG2446-RF,CG2446-RG,CG2446-RH,CG2446-RI,	FBgn0030328,	Amun,	1	.
CG16905-RA	TCAGCGTTTTTTGCAGTGATATTTAGCCAATTTTATTACCACAACTACATAAAGCCAGGAAAGAA	65	+	chr3R	5640652	5640717	5640652..5640717	CG16905-RA,	FBgn0037762,	eloF,	1	.
CG14010-RA	CCGCACACTCACGTACCCTCATCCAGGATGTGAACACAGGACGAGCTTATACTCACATGACTGCCGG	67	-	chr2L	5609885	5609952	5609885..5609952				0	no match
CG32397-RA	GCCAGAAAATTGGAAAACAACTGCGCGAAGTTGAGGAAAATGTGGAAAAAGCAGCCGTGACAAAGGCCA	69	-	chr3L	6556871	6556940	6556871..6556940	CG32397-RB,CG32397-RC,CG32397-RD,	FBgn0052397,	CG32397,	1	.
CG5878-RA	TGCAAATGCATTCTATGCCATTTCCTGGCTGCAATGGAAGGATTTCTTTCAGCCCAACAGACATAACGT	69	+	chr3R	21668064	21668133	21668064..21668133	CG5878-RB,	FBgn0039378,	alpha4GT2,	1	.
CG5871-RA	GGCGAAGGAATAACCGTTGACGATTTGGTTCTTCTCTGCGACCTGTTCTATCTGCCCTTCGAACATGGC	69	+	chr3R	17047057	17047126	17047057..17047126	CG5871-RA,	FBgn0038870,	Oga,	1	.
CG7758-RA	GCAGTTGCCTTTGTTTTTGACTGGGAAAATATGGTATTCATAACGAAATTCGCAAGGATTGGGCTGCAG	69	-	chr3L	21274363	21274432	21274363..21274432	CG7758-RA,	FBgn0027945,	ppl,	1	.
CG8777-RA	AAAAACCTGTATCGCCAAGCAATCGAAGCCTTCACTCGGGCGTGTAAGTTGTGCGAACCTGGAGC	65	+	chr2R	4989558	4989623	4989558..4989623	CG8777-RA,	FBgn0033376,	CG8777,	1	.
CG15639-RA	CCGCTGTGCTCCACGATGCTCCTGTTCGACTTTCTCGCCTGCTACATCTTTCTTGACTCCGCCAATGAC	69	-	chr2L	13306077	13306146	13306077..13306146	CG15639-RA,CG15639-RB,	FBgn0032502,	CG15639,	1	.
CG17556-RA	AGGCCATCAAGGAGCTCAACGAGTATCTGAAGAAGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGT	69	.	.	.	.	.	CG3678-RA,CG17556-RA,	FBgn0038461,FBgn0038462,	CG3678,CG17556,	2	.
CG6845-RA	AGCTTGCGTTTGACTTTGTTTGAGTTCGTGTCCATTGTTGAGAACGCCTGTTTCATGGCCACAACCTGC	69	+	chr3L	147941	148010	147941..148010	CG6845-RC,CG6845-RE,	FBgn0035099,	CG6845,	1	.
CG13888-RA	TGCTCGGTGGCATGAAGACCTTGGTCGGTGCCAATATTCTCTTCACAGAGGGTCTGAATGCCAAGAATA	69	+	chr3L	842042	842111	842042..842111	CG13888-RA,	FBgn0035167,	Gr61a,	1	.
CG4551-RC	TGCGAGTGCATGCTGTTGTACAACCACTTGCTCCTGATAATCCCTTCCCCACTCGAAATAGTTGCATCT	69	-	chr2L	14185853	14185922	14185853..14185922	CG4551-RC,CG4551-RB,CG4551-RA,CG4551-RD,CG4551-RE,	FBgn0016930,	smi35A,	1	.
CG15896-RA	CTATGTGCACTGCAATGCCAGCCTCTTCTTGACCAGCAATCTGTCGCACGATGATCCCTTCCTGC	65	+	chrX	6186659	6186790	6186659..6186701,6186767..6186790	CG15896-RA,CG15896-RB,	FBgn0029858,	CG15896,	1	.
CG31216-RA	CGAGGTGGACTCTTATTCGGTGTTCTGGGACAACAAGAAGCTATCTGACACCACTCTAAATGCCCAGCT	69	+	chr3R	15523417	15523486	15523417..15523486	CG31216-RA,	FBgn0051216,	Naam,	1	.
CG6279-RA	ACTGCCCGTTGGTTATCCGAAAGATGGATGCACAGTTCCCGACTTGGCGAGAAAGAATTTGTCAAATAT	69	-	chr3L	11086548	11086617	11086548..11086617	CG6279-RA,CG6279-RB,	FBgn0036125,	CG6279,	1	.
CG13957-RA	AGGCCCTTTCGCATCTCTTCCAGAGCCAGGATCAACCATTCCAGCAAAGTGCCTTAGACTATCGTCTCT	69	+	chrX	16210050	16210119	16210050..16210119	CG13957-RA,	FBgn0030739,	CG13957,	1	.
CG8495-RA	TCTTTTCGAATTTCTCGTGGAAAACGCCAACATGGGTTTCGCTACTCTCTGGTACTCGCATCCCC	65	+	chr3R	5603825	5603890	5603825..5603890	CG8495-RA,	FBgn0261599,	RpS29,	1	.
CG8334-RA	CCAGTAAGGAGGTTAAGGAAGAACTACCCAATCAAACGGGGTCCACAAAGGCTACGGCGTCGCCAC	66	+	chr3L	19873577	19873643	19873577..19873643	CG8334-RA,	FBgn0036913,	CG8334,	1	.
CG17098-RA	ACCCGATCCGATCATTCCCAGTGTCTCGAGCAGGGATCCACACTACTTCATACAAAATCAAAGCCACCA	69	+	chr2L	10652959	10653028	10652959..10653028	CG17098-RA,	FBgn0032276,	CG17098,	1	.
CG7147-RA	CGCCCGCTGCTAGTCATCGAACTACATGTATGAGTTGTTGCTTCCCATCCACCGACAAACACAAACAGA	69	+	chr2L	13636734	13636803	13636734..13636803	CG7147-RA,CG7147-RB,CG7147-RD,	FBgn0259984,	kuz,	1	.
CG10307-RA	TGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTACAATAAACTGGACGAATTCCCGCTCTGCAT	69	+	chr2R	17576802	17576871	17576802..17576871	CG10307-RA,	FBgn0034655,	CG10307,	1	.
CG11009-RA	TTCCTGGCGGATTTAATACCCCCGGATTTCAGCAACCGAATGGAAATCCAAATGGCTATCCAGGTGGA	68	+	chr3L	12844663	12844731	12844663..12844731	CG11009-RA,CG11009-RB,CG11009-RC,	FBgn0036318,	CG11009,	1	.
CG3688-RA	GCCTGCGGGAACGGTATAAGGATCCTTCGCTTCAGCTGAATCTCGTGTCCTGTCAGTTTGCCTTTCACT	69	+	chr2L	15010636	15010705	15010636..15010705	CG3688-RA,	FBgn0001974,	l(2)35Bd,	1	.
CG4497-RA	GGTGGATGATGCCACTCTGATGGACGATGCCAAAAGTGAGACCTCATCGATCGGTGGATGCTCCA	65	-	chr2L	7191613	7191678	7191613..7191678	CG4497-RA,CG4497-RB,	FBgn0031895,	CG4497,	1	.
CG32491-RE	TACCCTGCCCAAGCTACTGGACGGTAAGTTCTACAAGAACATCCAGCCGAACCAGAAGACGCCAG	65	-	chr3R	17189432	17189497	17189432..17189497	CG32491-RE,	FBgn0002781,	mod(mdg4),	1	.
CG10869-RA	CAGCCAGCTGAAGATCACGATGGAGCAGGTGAACAATATGACCCACTTGTTGATCGATCGCAAGCCGA	68	-	chr2L	1586155	1586223	1586155..1586223	CG10869-RA,	FBgn0031347,	CG10869,	1	.
CG7802-RB	CGACCACTTCATAATGGGTCCCATTTACAAGGGATCGGTTTCCGGCAAGATGCTGCTCTCCAATTTCGA	69	+	chr3R	25650192	25650261	25650192..25650261	CG7802-RA,CG7802-RB,	FBgn0039704,	neo,	1	.
CG4683-RA	TCGTCGCAATCGTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAGAGGGATGA	69	+	chr3R	6776732	6776801	6776732..6776801	CG4683-RA,	FBgn0037857,	CG4683,	1	.
CG4878-RA	CGCGTTACCCTGATGGAGATCCCCAAGAAGCGTGAGATCCGTAACAAGAACCTTTTCCATGTGGCCGAT	69	+	chr2R	13425232	13425301	13425232..13425301	CG4878-RB,CG4878-RA,	FBgn0034237,	eIF3-S9,	1	.
CG32491-RA	GCTGTTGCACAAGAAGTTCCCCTTCATCCGAGAGAAGTGCATAAATGGAAAAACCTACTGGCGCTGCAC	69	-	chr3R	17178246	17178315	17178246..17178315	CG32491-RA,CG32491-RF,	FBgn0002781,	mod(mdg4),mod(mdg4),	1	.
CG9231-RA	AGATCCTTCGGCACCAGTCAGATGTTGCGAGAGACGATCAAGAACCACGAGCCAAACAATCTGGAGC	67	-	chr3L	19578909	19578976	19578909..19578976	CG9231-RA,	FBgn0036887,	CG9231,	1	.
CG8866-RB	GCGCATTTCGTTTGCAGACTTCTTTGCGCATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCAC	67	-	chr3R	5159021	5159088	5159021..5159088	CG8866-RA,CG8866-RB,	FBgn0037679,	CG8866,	1	.
CG15141-RA	GGGAGCTGCTTTCTGGACAAATGACTGGCGAAAATCACTCTGTCAGTGCTCCGAATGCCTGTCGCTTTA	69	.	.	.	.	.	CG15141-RA,	FBgn0032635,	CG15141,	1	.
CG17744-RA	GGGACTACCGGGTGATCTTAAGGCCATTGGTGAAAAGTTCGATTATGCCTATTCCGTTGCAAAGCCTAT	69	-	chr3L	7019430	7019499	7019430..7019499	CG17744-RA,	FBgn0035730,	CG17744,	1	.
CG8119-RA	CGTTGCCGTGTTCAGGTGAAGAAAAGCAAGCTAATTCTACATCCGCAACAATATCTGCAATCGGT	65	+	chrX	15556932	15556997	15556932..15556997	CG8119-RA,CR43299-RA,CR43299-RB,CR43299-RC	FBgn0030664,FBgn0262991	CG8119,CR43299	2	.
CG2608-RA	GCGCAAGAGGCAACCACATCCACAGAGGACCCATGAGTCGCCTGTGACCCAATTAGTATACAGATAGCT	69	+	chr2L	20646826	20646895	20646826..20646895	CG2608-RA,	FBgn0032870,	CG2608,	1	.
CG15626-RA	GGAGTCGGGGCCCGATGACTGGAACTTGTGAGATTTATGCTTATACACGCAACGTAGGCTTTAGCTATA	69	-	chr2L	4835701	4835770	4835701..4835770	CG15626-RB,CG15626-RA,	FBgn0031635,	CG15626,	1	.
CG4604-RA	CCCGACTACTGCCAGGTTCCGGAAAGTACCAGGTGCTATACACAGACTACGAGAACTTCGCCATCTTGT	69	-	chr2R	9051897	9051966	9051897..9051966	CG4604-RA,	FBgn0033799,	GLaz,	1	.
CG9070-RA	AAGATGCCAATGTTCTCCGTGCCGAGCAGCAAGTGAATGTTGACGGCTTTGCTTACGCTGTTGAG	65	-	chr2R	7165726	7165791	7165726..7165791	CG9070-RA,	FBgn0086519,	Cpr47Eg,	1	.
CG8965-RA	AGGATGAAGACGAGTGTGCTAGCAGTTCTGGCTCCTCGGATAATTCCACAGAATGTGCCCTACGC	65	-	chr2L	5860512	5860577	5860512..5860577	CG8965-RA,	FBgn0031745,	CG8965,	1	.
CG4919-RA	AGGGCTGCAGTTGTCTGGACGGTCGCGAAAGTAGCAGATACCAAATAAGGAGAACACTTGTCACCATGA	69	-	chr3R	18512068	18512137	18512068..18512137	CG4919-RA,	FBgn0046114,	Gclm,	1	.
CG10026-RA	GGCAGCCTGGAACCCATCTCACAGATTGTCGGAGGAGTGGGAATATTCGATCTGAAGGACCTGGG	65	+	chr2L	19457042	19457107	19457042..19457107	CG10026-RA,CG10026-RB,CG10026-RC,	FBgn0032785,	CG10026,	1	.
CG8383-RA	AATACACCCAAGATGGCAAGAAGAACGAGCACAATGGGGACCGACCGTTCCCCCGAAATGCAACA	65	+	chr3R	5566934	5566999	5566934..5566999	CG8383-RA,CG8383-RB,	FBgn0037737,	Pnn,	1	.
CG4379-RA	CAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGACAAGCAGAAGGTGGTCAAGCT	65	-	chr2L	9697312	9697377	9697312..9697377	CG4379-RB,CG4379-RC,	FBgn0000273,	Pka-C1,	1	.
CG33106-RA	GCTGCTACAGAGCTTGGTGTTCTTTGCCAGAAGTGAATGGTGTGGTCGATACCCCGAAAAATGTAGTTA	69	+	chr3R	20074862	20074931	20074862..20074931	CG33106-RA,CG33106-RC,	FBgn0043884,	mask,	1	.
CG9035-RA	TTCGTCATCGAGATTTTGAATGAAATTCATTCGCACTAAAGTCATGTACCATCAAATTGCCGGGT	65	-	chr2R	7257880	7257945	7257880..7257945	CG9035-RA,	FBgn0021795,	Tapdelta,	1	.
CG10949-RA	CCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGAACCTAGCAGCGAAAAACGAAGCCTGGCGA	69	-	chr2L	20416191	20416260	20416191..20416260	CG10949-RA,	FBgn0032858,	CG10949,	1	.
CG31122-RA	AAACATCGTAGAGCAAGCACTGTAATCGTAGCGTGTCTCAAGCAATTTATGTTTTAAGTACCCCAATGA	69	-	chr3R	14232703	14232772	14232703..14232772	CG31122-RA,CG31122-RB,	FBgn0051122,	CG31122,	1	.
CG8326-RA	CAGCTATACCGTCAGCTCAAAAACAAGACAACAGCAGATTCCTAACAGATTCTAGACTAGATACCAACG	69	-	chrX	17522364	17522433	17522364..17522433	CG8326-RA,	FBgn0030851,	CG8326,	1	.
CG4954-RA	TGCAATTCGTGGACAAGGTCACAAATCTGGTGGACGTCAACGAAAAGGTGTTCGACATGAAGCAGGGCA	69	+	chr2R	13556100	13556169	13556100..13556169	CG4954-RA,	FBgn0034258,	eIF3-S8,	1	.
CG5785-RA	CCGCTTTCTGCAGAGAAACAGCGAACAATTGGACGAATTCTATGGAAGAGCGCATAGTTGGATGCAGGA	69	-	chr2R	13749892	13749961	13749892..13749961	CG5785-RB,	FBgn0003701,	thr,	1	.
CG15097-RA	CACGCGCCTAATGCAGGAATTTGATTGTTCGAGTTCGTTATGGATAGACTTAAGAATATTTATATGACT	69	-	chr2R	14709974	14710043	14709974..14710043	CG15097-RA,CG15097-RB,CG15097-RC,	FBgn0034396,	CG15097,	1	.
CG32170-RA	GTCGCGAGTCCAAGGAGAACCGTCCCGATTTCCTGGTCTTCGACAATGATAACTACCGCCCTCAG	65	+	chr3L	16871369	16871434	16871369..16871434	CG32170-RA,	FBgn0052170,	CG32170,	1	.
CG11052-RA	TGACCTCCCAAGAAACGCAGACTGAGGGTGAACGTAGGAGGGTAACTCTTCCATCTTCGACACCAGATA	69	-	chr3R	3834703	3834772	3834703..3834772	CG11052-RA,CG11052-RB,CG11052-RC,	FBgn0040524,	CG11052,	1	.
CG17632-RA	GCGGCACCTACATGAATGTGGACACAGTGCCTGGACTAAAGTACCTCTCGTTGTTCTTCTACTCCAACG	69	-	chr2R	19416064	19416133	19416064..19416133	CG17632-RA,	FBgn0000241,	bw,	1	.
CG17256-RA	AGCGAGTTGGATGGCAAGTTCCCAATTCTAGTTGATTCTGGAGAGGATTTCTACACACTGCCTTCGGGT	69	-	chrX	7784608	7784677	7784608..7784677	CG17256-RA,	FBgn0029970,	Nek2,	1	.
CG41104-RA	CACTGTACAGTGTATTTGTGTGAGTGATGAGATTCTCGCTCCAATAAGCAAAGTGGTGTTGCCAT	65	.	.	.	.	.				0	no match
CG33067-RA	GCCCACGCGCTTTAATTGGATAGTGGCCAGTCCTTTACTATTGGCACAACAGGGAGTTTACTACGCCGG	69	-	chrX	17032184	17032253	17032184..17032253	CG33935-RC,CG8923-RB,CG8923-RC,CG8923-RD,CG8923-RE,	FBgn0028581,FBgn0002709,	mei-217,mei-218,	2	.
CG8248-RA	TGGACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAAGAAGATCCCAAGGCAGGCCC	65	-	chr2R	4807226	4807291	4807226..4807291	CG8248-RA,	FBgn0033347,	CG8248,	1	.
CG17046-RA	TGCCTACAAATGCGAACTGTGAACGAGGAGCTACCAGCAGATGACAAAGGATCCGTCGAGGAGTCCAAA	69	-	chr3L	434543	434612	434543..434612	CG17046-RA,CG17046-RB,CG17046-RC,	FBgn0001316,	klar,	1	.
CG6219-RA	TCGGGGACGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGCGCAA	69	+	chr3R	20048073	20048142	20048073..20048142	CG6219-RE,CG6219-RD,CG6219-RA,CG6219-RB,	FBgn0026257,	cav,	1	.
CG7855-RA	AGCCAAGGAGTCAAAGGACTGCAATGACGATGGGACAGATAAAGCAGAGCTCGAGAAACCCAACACGGA	69	+	chr3R	8988973	8989042	8988973..8989042	CG7855-RA,	FBgn0038118,	timeout,	1	.
CG12327-RA	CGCTCGATTGGGCATACCAAAAGTTGTCCCCGTGACCATGACGAAAAGCGAAGTCAGTTTGGAAAACGA	69	-	chr3L	15294497	15294566	15294497..15294566	CG12327-RA,	FBgn0036492,	Best3,	1	.
CG12413-RA	GGGAATTGTAGTGGAATCAAAGACTGATCCCCGTCGTGGCAAACTATCGACAGCCATCGTCTCCCGC	67	-	chr3R	24369143	24369210	24369143..24369210	CG12413-RA,	FBgn0039588,	CG12413,	1	.
CG8380-RA	CGAGGATATACGGGACATGATTGGTTTTCCACCGGGAAGATACTGGCAGGTGTGTTGGCGATTTGTGGC	69	-	chr2R	12447208	12447277	12447208..12447277	CG8380-RA,	FBgn0034136,	DAT,	1	.
CG32448-RA	CGGGGTCTTCGGCTACATCGCGTATATGAGGTACAAGTACGAGAGCTTGGGATACTATGTGGCTGTCCA	69	-	chr3L	21820997	21821066	21820997..21821066	CG32448-RB,CG32448-RC,	FBgn0052448,	CG32448,	1	.
CG31822-RA	TGGCTGGGGTAAGAAGAACTTCGAGAACATCAATGTTCAGAAGAAAATGTGCCCCTGGTGGACAGATCT	69	-	chr2L	15837011	15837080	15837011..15837080	CR31822-RB,	FBgn0051822,	CR31822,	1	.
CG10365-RC	AACTCGTATTCGGAGCACAATTCTGGTTACCATAGATGGCTCACTTCAGTGGTCATCGCCAGCCG	65	+	chr3R	19554543	19554608	19554543..19554608	CG10365-RC,CG10365-RB,CG10365-RA,CG10365-RD,	FBgn0039109,	CG10365,	1	.
CG4641-RA	GGCGAGCTAGCATACCCGAGGAATTGGACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGA	69	+	chr3L	9137353	9137422	9137353..9137422	CG4641-RA,	FBgn0035967,	CG4641,	1	.
CG11274-RA	CCAGTGACAGCGACTCAGAGGCCTCCTCCAAGCGCAAGAAGCATAAGAAACACAAGAAGCACAGCAAG	68	+	chr3L	13033197	13033265	13033197..13033265	CG11274-RA,	FBgn0036340,	SRm160,	1	.
CG12267-RA	GCAACTGGAATTCTGCTAAAATGCCTAGCCGAGAATGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGC	69	+	chr3R	8286676	8286745	8286676..8286745	CG12267-RA,CG12267-RB,	FBgn0038057,	CG12267,	1	.
CG7887-RA	TGCCCAAGGGAAACTCGATACCTTGTTGGGACTCAGTAAGGAAAGGTTGTTGCGGTCAGTAAAAGACTA	69	-	chr3R	25776797	25776866	25776797..25776866	CG7887-RA,CG7887-RB,	FBgn0004622,	Takr99D,	1	.
CG2264-RC	ACCACCGAGGTCACACCAATACCATTGGCACTGGAGTTAATCCACACTCATATTCCGAGGATGCGAGTG	69	+	chr2R	5949215	5949284	5949215..5949284	CG2264-RA,CG2264-RC,CG2264-RB,CG2264-RD,	FBgn0262169,	magu,	1	.
CG8460-RA	AGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTTCGATGGACTCGTCCTGGAGGTGTG	66	+	chr2L	8197957	8198023	8197957..8198023	CG8460-RA,	FBgn0031996,	CG8460,	1	.
CG12230-RA	GCGGCAATCGGGACTGCAGATGAGAATCCAGGATGCTAGGGGCGTTGTGAATGACACGATTACTAAGGA	69	+	chrX	19462470	19462539	19462470..19462539	CG12230-RB,CG12230-RA,	FBgn0000257,	car,	1	.
CG15571-RA	GCCTTGGATACGACCACGAGCAGTTTGAATTCCACAACGGAGGATAGCGAAAATACAACCGCAACCACA	69	-	chrX	4111020	4111089	4111020..4111089	CG15571-RA,	FBgn0029696,	CG15571,	1	.
CG7845-RA	TCGCTTTCTGAGCTCTGCAAGCCTAGACCGATACGTTCGTATCCATGATTCCGAAACCACAGTGCTGCT	69	-	chr2R	1962763	1962832	1962763..1962832	CG7845-RA,CG7845-RB,	FBgn0033059,	CG7845,	1	.
CG18348-RA	ACGGATATCGTCCTACTGGTGCTCATCTGCCCACGCCGCCTCCCATTCCTGATTACATCCTCAAG	65	+	chr3L	10887604	10887669	10887604..10887669	CG18348-RA,	FBgn0036110,	Cpr67Fb,	1	.
CG17143-RB	CGGGGATGGAACTGGAGAGGATCGGAGAATAGTAGTGTTGCTGAAACAGTTCTTGAAGTGGGCCAGTGA	69	-	chr3L	212459	212528	212459..212528	CG17143-RA,CG17143-RB,	FBgn0035110,	thoc7,	1	.
CG31743-RA	AACTGGTTTGGCTTTCGTTTTGCATTTCAATAGGCTTTTCGCTCCTGGGAAATTTCTCCACTGGCCTGC	69	+	chr2L	16881520	16881589	16881520..16881589	CG34313-RA,CG31743-RA,	FBgn0085342,FBgn0032618,	CG34313,CG31743,	2	.
CG3788-RA	CGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGTCTGAAGATAAACGCGGCTACCA	69	-	chr2R	18820479	18820548	18820479..18820548	CG3788-RA,CG3788-RB,	FBgn0034800,	CG3788,	1	.
CG3736-RA	TGGCACCATGTCCATCAAGAAGCGATCGAAGGTTGTTGACCGATTCAATGACCCGGAGTCTGACAGCTT	69	-	chr2L	2990829	2990898	2990829..2990898	CG3736-RA,	FBgn0002989,	okr,	1	.
CG13898-RA	CCTTCGAGCTCTGTGATCCTGAGAAGACTGGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCA	69	-	chr3L	803849	803918	803849..803918	CG13898-RA,	FBgn0035161,	CG13898,	1	.
CG14780-RA	TATGTAGTAACTATGTTCTAAACAAAATATTCATAATACACATTCACGTACAATGTAGCGACAGC	65	+	chrX	1367665	1367730	1367665..1367730	CG14780-RA,	FBgn0025383,	CG14780,	1	.
CG2679-RB	GGATACCCGAACGATCTCAGAGCTCCCTATCGCTTAGACAAGCTCGTGATTGGGTGAGCCTGATGAGCA	69	-	chr2R	20960856	20960925	20960856..20960925	CG2679-RB,CG2679-RC,CG2679-RD,CG2679-RE,	FBgn0004919,	gol,	1	.
CG8913-RA	CAAGCCAACCCATGCCGATATTTTGGCCTTCGATATCCAAAGGGGGAGAGATCACGGTCTGCTGC	65	+	chr3R	12832075	12832140	12832075..12832140	CG8913-RA,	FBgn0038465,	Irc,	1	.
CG18139-RA	CCAAGAGCAGCCTTTGCCTGGAAAGCAAGGAGAGTGGTGGCCAGCACAAGGAGCTAGCGCAAGGA	65	+	chr3R	13393916	13393981	13393916..13393981	CG18139-RA,CG34419-RC,	FBgn0038522,FBgn0085448,	CG18139,Hmx,	2	.
CG10324-RA	CGAGCATGGCCAGATTATTGTGAAGCAGGAAAATCCGTCAGGAAGAAGGGACAGAGACCGCAGGGAAGA	69	-	chr3R	12471562	12471631	12471562..12471631	CG10324-RA,	FBgn0038454,	CG10324,	1	.
CG1514-RA	CCATGCCAATCTACGTAAGCGACCGTCGGGCATTTCCAGTGGTTGGGTAGTAATGCGCTCCCTTAATCA	69	+	chrX	7809903	7809972	7809903..7809972	CG1514-RA,	FBgn0029976,	snz,	1	.
CG13390-RA	GGCAACCGTTTCTTTACCACGGACAAGGAAACAAGTCCCAAGGTCAGCGAATACGGTCCTAGGGGTGAA	69	-	chr2L	8376125	8376194	8376125..8376194	CG13390-RA,	FBgn0032031,	CG13390,	1	.
CG7719-RA	CGACCGCCGATAAGATGTCAGGCATTCAGTACCATCTGAAACTGTCCGACGATCCCACGATGTCGCCTA	69	+	chr3R	14575042	14575111	14575042..14575111	CG7719-RA,	FBgn0260399,	gwl,	1	.
CG16910-RA	GGCGCCTCATCCCGGACTTCAGACACCACTTTGCGATGTCCGATCTGTTCAAAGTCCTTTAACGCCTTA	69	-	chr2R	20673122	20673191	20673122..20673191	CG16910-RA,CG16910-RB,	FBgn0041205,	key,	1	.
CG4167-RA	CACTTCCAGTCGTCAAAGGCAGCCTGGAACGACAGGAGCGCATCGTAGACATCCAGCAGATATCG	65	-	chr3L	9371870	9371935	9371870..9371935	CG4167-RA,	FBgn0001227,	Hsp67Ba,	1	.
CG15233-RA	CGGATGGTGGTGTCTCTTCTGGGAATGTTTGCCATGCTAACCGAGTCGATCTACTTGACTCAGAAAGTT	69	-	chr2R	2487899	2487968	2487899..2487968	CG15233-RB,	FBgn0033076,	CG15233,	1	.
CG16998-RA	GTGGAGTAGAGGTGCCCATTCATCTTACACCATGGTTGGCTTCGATCACGGTGCATGGCAACTATAGTT	69	-	chr3L	7532788	7532857	7532788..7532857	CG16998-RA,	FBgn0035795,	CG16998,	1	.
CG17147-RA	GTGACAAGACCGGTAACCATGCGTCCAAGAGCTGCACTGTCACCTCCAAGAAGCGCGAGTATTTC	65	+	chr3L	20217887	20217952	20217887..20217952	CG17147-RA,	FBgn0260393,	CG17147,	1	.
CG8458-RA	TGGTGGGAGCTCTACTACAAAGATCACTGGAACAGGAATGCCGGTGCAAGCAACCAGGAGCTGTG	65	-	chr3R	9118350	9118415	9118350..9118415	CG8458-RA,	FBgn0038134,	wntD,	1	.
CG4198-RA	CAGCTGGATTCGCAGTCCAATTCGAGTAGGTGGCATGAGGTCTCAATGATGCTGTCGTGGTTCGG	65	+	chrX	5208716	5208781	5208716..5208781	CG4198-RA,	FBgn0029753,	CG4198,	1	.
CG3800-RA	GCAGCATATGAATCCATAATCCTGAACATCATCCAGTAACCATCGCTGATTCCAAAAGCCGAGCCTGCA	69	-	chr2R	18823204	18823273	18823204..18823273	CG3800-RA,CG3800-RB,	FBgn0034802,	CG3800,	1	.
CG31268-RA	AACAACTTTGACTAAGAACTTACAAACAGTGACCAATTCCCAAAAACACAAAACAAACGCTCCAATGCG	69	+	chr3R	12858296	12858365	12858296..12858365	CG31268-RA,CG31268-RB,	FBgn0051268,	CG31268,	1	.
CG12918-RA	GGTCAGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTCAACAAAAGCCTGGGG	69	-	chr2R	5938698	5938767	5938698..5938767	CG12918-RA,	FBgn0263260,	sel,	1	.
CG5840-RB	CACAGTCCGCGGACTTTTTAACCCATTAACTAATGTCGGCAATCGGAAAGATCGGATTCCTGGGAGGCG	69	+	chr3R	13361462	13361531	13361462..13361531	CG5840-RA,CG5840-RB,	FBgn0038516,	CG5840,	1	.
CG2747-RA	CGCCGTTCTGGAGGTTTGTCTTTGCCTATTTGTTCGCCAAATACCTACGATGAATCCCACGAGGCAGGG	69	-	chr3R	3844690	3844759	3844690..3844759	CG2747-RB,CG2747-RA,CG2747-RC,CG2747-RD,	FBgn0037541,	CG2747,	1	.
CG10176-RA	TGTCGGTCAGGAAGTTGAGTGCCCTATCGCTCTCCATTGGTGGAGTTCCGTTGATTCCAAGTGTTTCCT	69	+	chr2L	18485968	18486037	18485968..18486037	CG10176-RB,	FBgn0032682,	CG10176,	1	.
CG18404-RA	CAACCTCTGAAGAACTTTGGAGCAGTTCAATTAACAAATAAATATTCAATCGCGCAAAGAGCTTA	65	+	chr3R	26079755	26079820	26079755..26079820	CG18404-RA,	FBgn0039761,	CG18404,	1	.
CG33054-RA	TCGGCGAGCTTTTGTAGTCGGAATGTCATCCAAACCTCAGTACACCCTAAGCGAAGTGGATGGGGATCT	69	-	chr3L	21191118	21191187	21191118..21191187	CG33054-RB,CG33054-RA,	FBgn0053054,	CG33054,	1	.
CG9881-RA	AAAGGCGGTCATAGAGTCACTACCCCAACTGTTCCCTGCCCCATAAACCGATTCATACGCATCGCG	66	+	chr2L	2580903	2580969	2580903..2580969	CG9881-RA,	FBgn0031437,	p16-ARC,	1	.
CG2556-RA	TGGGAACGGTCGAGGCGATCATCTAAAGAATGTGGGTCGGGTACCCTTGCAGAAAACGGCAAAACAAAA	69	+	chrX	12410066	12410135	12410066..12410135	CG2556-RA,	FBgn0030396,	CG2556,	1	.
CG13654-RA	TGGAACCGCACGAGTGTCCATCATGGAGAGCGTTAAGGAGTTCATCAGGAAGCACCAGGACATGTTG	67	+	chr3R	21038290	21038357	21038290..21038357	CG13654-RA,	FBgn0039290,	CG13654,	1	.
CG32438-RA	CGCGCAGTGTCCATCGCCATATACTCATTGTCCTTGCAACATGTCACCCACGTGCCATTCAGGTGATTG	69	+	chr3L	21566171	21566240	21566171..21566240	CG32438-RA,	FBgn0052438,	Smc5,	1	.
CG12908-RB	TCCGCACCATCTCCAACGAACTGTCTTATCCCTTCGGCATTACCTTCACGCACGATCAGTTCTACTGGA	69	+	chr2R	6208828	6208897	6208828..6208897	CG12908-RA,CG12908-RB,	FBgn0026403,	Ndg,	1	.
CG6337-RA	CCCCGTCATAGTCGAGTACAATCCGGCTACCTTTGGATTCATGCAGTACTCCAGTGGCGTCTATGTCCA	69	-	chr2R	9721629	9721698	9721629..9721698	CG6337-RA,	FBgn0033873,	CG6337,	1	.
CG6737-RA	CGTGCCGGGGCTGATTGAAAGTCTCAAGCTGAAGGAAACCAGTATATCGCCAATCGTGCTGGATCGCTA	69	-	chr2L	10736838	10736907	10736838..10736907	CG6737-RA,	FBgn0032294,	Vha16-5,	1	.
CG16954-RB	GCGTCATCCTGCTGAAGGAATCCCACAGTCCCTTCGATGAGGCTAAGATCCAGGAGGGTATAACCATCG	69	-	chr2L	13448715	13448784	13448715..13448784	CG16954-RA,CG16954-RB,	FBgn0032525,	Hsp60D,	1	.
CG41042-RA	GCACAGCAGAGTTGAAGTTGGACATACCTCGGATAGAGACGATTAAGAGAAACAGGACAACTTAG	65	-	chrU	386164	386229	386164..386229				0	no match
CG32462-RA	CTCCCCAGCCAGTAGAGAAATGAGTTCGCTAGAGGGCCTCAACTACTTCTTCACGCGCTTTCAGT	65	-	chr3L	22845783	22845848	22845783..22845848	CG32462-RA,	FBgn0052462,	CG32462,	1	.
CG14044-RA	AGCGAGTCCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGTTGGAACACACTAAGGTGCGT	69	+	chr2L	4943419	4943488	4943419..4943488	CG14044-RA,	FBgn0031650,	CG14044,	1	.
CG13139-RA	AGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGACCGTGTTCCAACTGCTTCACTG	67	+	chr2L	10365781	10365848	10365781..10365848	CG13139-RA,CG13139-RB,	FBgn0032230,	lft,	1	.
CG12186-RA	AGTGCACACCAGCAAAGGAGAAACATATGAGCTCGATTTCAGTGAAACCCTGAAACTGGTGGCAGAACA	69	-	chr3L	2650278	2650347	2650278..2650347	CG12186-RA,	FBgn0027082,	Aats-pro,	1	.
CG2380-RA	AGGATCAGCTGAAAACCATTCATTTCAACACTCCCATACACTCCCACAAGGTCATGGTCATTCGCCGCA	69	-	chr4	292187	292256	292187..292256	CG2380-RB,	FBgn0042696,	NfI,	1	.
CG8161-RA	ACCGGAAAGACAGCCAGAGTTCAAAGCGAGAAAGCCAACTGATGATCGTCATCCCTCCTGGCTGG	65	+	chr3R	5340241	5340306	5340241..5340306	CG8161-RA,	FBgn0014022,	Rlb1,	1	.
CG11942-RA	GCAGATCAAGGGCCTACTGGAACTCACCTACAATGTGGTGGCCAATATGATTAGGGGCAAGACTCCCG	68	-	chrX	19717629	19717697	19717629..19717697	CG11942-RA,	FBgn0031074,	skpE,	1	.
CG10354-RA	TGCTGCCAAATGAGCAGTCTGGTAACAAGCATCGTCCCGTCATCGGTTTTAATAGCCACTTGACCAGG	68	+	chr2L	6910434	6910502	6910434..6910502	CG10354-RA,	FBgn0031868,	Rat1,	1	.
CG7655-RA	TCGAAATAACAAGCTATTTTCTCAATTTTCCTGACAAAAATGACATCGATTGCCAAGTCCATAGTACTA	69	+	chr3R	13508471	13508540	13508471..13508540	CG7655-RA,	FBgn0038536,	CG7655,	1	.
CG10230-RA	TGGCTCATCCCATTCTTGAGTCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCT	69	-	chr3R	19557786	19557855	19557786..19557855	CG10230-RB,CG10230-RA,	FBgn0028691,	Rpn9,	1	.
CG13245-RA	CGCAGCTCTGCACACTGGCGAGTACTCAGAAAAAAAAGGAAGACGAATAAACGCCAGGAGGAAATGCGG	69	+	chr2L	16005302	16005371	16005302..16005371	CG13245-RA,	FBgn0045827,	CG13245,	1	.
CG8274-RA	GAACAGGAGGGCTACGAAGACTCGTACGAGCAGGACAATGAGATGGATGACAACGAAGGTGGTGACGAT	69	+	chr2R	7746647	7746716	7746647..7746716	CG8274-RA,	FBgn0013756,	Mtor,	1	.
CG12075-RB	CCAGTGCATCACCATCAACGCAAGGAGAATCTCACCGACAAGCAAAAGTTCATGGAGTATACCAGCAA	68	+	chrX	8764680	8764748	8764680..8764748	CG12075-RA,CG12075-RB,CG12075-RC,	FBgn0030065,	CG12075,	1	.
CG7250-RA	GGCAGGCAGTTAGCATACTTTTTGGGATGGTTCACACAGACTGATACTTTTAGTTCTTTAAATAAATTA	69	+	chr3L	15335014	15335083	15335014..15335083	CG7250-RA,CG7250-RB,CG7250-RC,	FBgn0036494,	Toll-6,	1	.
CG32404-RA	AGGGCAGCGTCCATTGGGTGGGACCTGATGGTATTCACTATAAGCTGAACTATCTGGCCGATGAGAACG	69	-	chr3L	6135135	6135204	6135135..6135204	CG32404-RA,CG32404-RB,	FBgn0052404,	Cpr65Aw,	1	.
CG14631-RA	ATGATTTGGCTAACGAGTACACCGGCAGTGAAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTC	65	+	chrX	906149	906214	906149..906214	CG14631-RA,	FBgn0029552,	CG14631,	1	.
CG9769-RA	GCGGAAATTTTCCTTGCAAATCTTGGCCACCGAAAATTACCATGTCGGCTCTCAATCTGACCGTGCG	67	-	chr3R	539781	539848	539781..539848	CG9769-RA,	FBgn0037270,	CG9769,	1	.
CG12864-RA	CCACGTGGCACAAAACTGATCAAGAAGTCAGTGCAACAAGTGGCTACCAATCCCTCATTAGCCGGCACC	69	-	chr2R	10496032	10496101	10496032..10496101	CG12864-RA,CG12864-RB,	FBgn0026427,	Su(var)2-HP2,Su(var)2-HP2,	1	.
CG12855-RA	CCAGCTGGTGCCAAAGACAAAACTCTGGAGCATGGTGGAGATCGCGAGAAATTACCTTAAGAAGGGCCA	69	+	chr2R	10744389	10744458	10744389..10744458	CG12855-RA,	FBgn0033973,	HPS1,	1	.
CG2291-RA	ACGCTACACCACAGTACAACTGCATCCAGCTGAAGGCTAACCAATACCTAAGGTATCCGGACCACGAAA	69	-	chr2R	4148742	4148811	4148742..4148811	CG2291-RA,	FBgn0033279,	CG2291,	1	.
CG8285-RA	CTCGCCCGATCACAACAAGATCACCCGGTTTTAGCCCACGAGTGTACAATGTGGCACTTCTAGTCAACG	69	+	chr3R	21792486	21792555	21792486..21792555	CG8285-RA,	FBgn0000206,	boss,	1	.
CG13968-RA	GCCATGTGAAGGATCAGCAGGAGATCAGCAGGCATCAATTACAAGAAAATCGTCAACAAGCTACACGGT	69	+	chr2L	20055236	20055305	20055236..20055305	CG13968-RB,	FBgn0032840,	sNPF,	1	.
CG5010-RA	GCCGGATGAACCCATCGGATGAACACCTCCGGATGAACTCTGTCCTATCCCTTCGTTTAGTTCTTAATT	69	+	chrX	17044385	17044454	17044385..17044454	CG5010-RA,	FBgn0260747,	CG5010,	1	.
CG4610-RA	CGGTTATGGCGTGGAGTACGACTTCATAGACCCCCGTGAGTTGTATCCCACACTGGAGACGAAACGAGT	69	+	chr2R	18380847	18380916	18380847..18380916	CG4610-RA,	FBgn0034735,	CG4610,	1	.
CG10174-RA	CGGATCGGAAACTCTAATCGTACCCCGTATATACTTGAACTAAAATGTCTCTGAATCTGCAGTAC	65	+	chr2L	18454722	18454787	18454722..18454787	CG10174-RA,	FBgn0032680,	Ntf-2r,	1	.
CG5825-RA	AGTTCGGTCAATTGTCAAATCTGCTCAAAACCACTTAATTACCAGGTAAACGATGGCACGTACCAAGCA	69	+	chr2L	5055206	5055275	5055206..5055275	CG5825-RB,CG5825-RA,	FBgn0014857,	His3.3A,	1	.
CG5793-RA	GCCGATGCGTTCAAGGCAGGCGATGTAATTCAGTGTGGAATGGCCGATCTCGCTAAATTGACCTTCCAA	69	+	chr3R	16954531	16954600	16954531..16954600	CG5793-RA,CG5793-RC,CG5793-RB,	FBgn0038858,	CG5793,	1	.
CG15201-RA	CTGCCTCAAGTGTCCCTAAATCCGAGGAGTTTCATTAAGAACAGTGTATTCAAATGTAGAAATGTAAAC	69	+	chrX	11038709	11038778	11038709..11038778	CG15201-RA,	FBgn0030272,	CG15201,	1	.
CG14754-RA	GGTCAGCCAAAATGGAGTGCTGCGCACAATGGAATGCCGTGCTATAAATAAAGTGCCCGACCGAA	65	+	chr2R	4421790	4421855	4421790..4421855				0	no match
CG6255-RA	ACGCCCTCAAAGTGTTTCTGTCCGACAAGGAGATCAAGGGCATTGTCATGATTGGAGAGATTGGCGGAT	69	-	chr3R	15287956	15288025	15287956..15288025	CG6255-RA,	FBgn0038708,	CG6255,	1	.
CG10992-RA	TCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAATTCAGGAGGAGATCATGACCAATGGAC	69	-	chrX	13674472	13674541	13674472..13674541	CG10992-RA,	FBgn0030521,	CG10992,	1	.
CG7900-RA	GGCGCCTCTCTATTCGGCATTGGCTCAGATATTGGAGGTTCTATTCGCATTCCCAGCTTGTATTGCGGC	69	+	chr3R	3926272	3926341	3926272..3926341	CG7900-RB,	FBgn0037548,	CG7900,	1	.
CG15701-RA	ACGGGCAAATCGTGTGCCATTCAAAACATCATACTCAACGAGCGTAGATCATTTGACCAGCAGATGGAT	69	+	chr2R	12121065	12121134	12121065..12121134	CG15701-RA,	FBgn0034095,	CG15701,	1	.
CG7134-RA	GCGGGTAGATACGATGCACCTGAATGACCAGGATAACTTAGATGCAGCTTGTACGGATCAAACGGATGA	69	-	chr2L	7805542	7805611	7805542..7805611	CG7134-RA,CG7134-RB,CG7134-RC,	FBgn0031952,	cdc14,	1	.
CG10261-RA	ACTGATGTTTCCGACTAATTTTTTAAACTGGATGCACTTTTGGCATATACTACCAGATGCTAGCAAAAT	69	-	chr2R	10832037	10832106	10832037..10832106	CG42783-RA,	FBgn0261854,	aPKC,	1	.
CG17034-RB	GGCAGCATACACAAAGGAAGTGATCTGGAGCGATGGCAAGACCAGTGATTACCTATTGATGGGCAACCT	69	-	chr2R	9306978	9307047	9306978..9307047	CG42321-RE,CG42321-RG,CG42321-RI,CG42321-RH,CG42321-RJ,CG42321-RK,CG42321-RL,CG42321-RM,CG42321-RN,CG42321-RO,CG42321-RP,CG42321-RQ,CG42321-RR,CG42321-RS,	FBgn0259221,	CG42321,	1	.
CG31777-RA	TGCCATTGATATCGAGGGATACTATTACGATCCGATAACATTTGACTGCAAGATGTACAAGATCGGGGC	69	-	chr2L	3706682	3706751	3706682..3706751	CG31777-RA,	FBgn0051777,	CG31777,	1	.
CG5931-RA	GCACATCAAGACCAATTTGCTGCTTCAGGCTCATCTTTCGCGATTGCAACTGGGACCTGAACTGCAAGG	69	-	chr3L	15954839	15954908	15954839..15954908	CG5931-RA,	FBgn0036548,	CG5931,	1	.
CG15870-RA	TACGCTGGATACGCGGGAGTTCTTCCGGTTCCTCTTCCCGTACCCTATCCCGCAACCTATAATCG	65	-	chr2R	9051035	9051100	9051035..9051100	CG15870-RA,	FBgn0033798,	CG15870,	1	.
CG16898-RA	GCGAGCAATCCCCAATCAGCCGTAGCCATAGACTTTCAATTCAGCAACTTCACCTCCCCTGTCAACGAC	69	-	chr2R	15891623	15891692	15891623..15891692	CG16898-RA,	FBgn0034480,	CG16898,	1	.
CG4892-RA	CAGGCTGAGAGCCGTCTGCGTAAGGTTCCATCCAAGATGTCCGGAAAACCTCAAGCTCCTGATCTCAAC	69	+	chr2L	16134168	16134237	16134168..16134237	CG4892-RA,	FBgn0028884,	CG4892,	1	.
CG3842-RA	CCACATCATCGCTTGAAAAATTCGACTAAAGCGGAAGAGAACACTGACGGGGGAAACCAGAGATTGTGT	69	.	.	.	.	.	CG3842-RA,	FBgn0029866,	CG3842,	1	.
CG33129-RA	AGCAGATGCAAACAGAATACGCGTCATAGTAAATAGTGAAGGAAGCCCTAATTTTTCGCAAAAAGTTAA	69	-	chr2L	10965482	10965551	10965482..10965551	CG33129-RE,CG33129-RA,CG33129-RB,CG33129-RC,	FBgn0053129,	CG33129,	1	.
CG11909-RA	TGGGAGGATTGCTATGGAGCCATGACCTTCAGGAAGAACAAGTTCCCCGATAGCAAGACCCTGACTGAT	69	-	chr3R	21171651	21171720	21171651..21171720	CG11909-RA,	FBgn0261575,	tobi,	1	.
CG11757-RA	GCTTTCCCGTCAAGTTTCGGACGTATCTGGGCAAGCCTATACCCTACGATGAGAACCTAACCCCGCAGG	69	+	chrX	11237862	11237931	11237862..11237931	CG34348-RA,CG34348-RB,	FBgn0085377,	CG34348,	1	.
CG15006-RA	CGAGCAGCAGTAGACCTCCAGTTCTCCACTACTCCATCGCAAACACCAAGCAATCCGTCCAGAATGG	67	-	chr3L	4209088	4209155	4209088..4209155	CG15006-RA,	FBgn0035510,	Cpr64Aa,	1	.
CG11546-RA	TGCTTTGACATATCCGAGAAGGACATTCTCTTCTGCACCCTCAACTCGCACAAGGTGGACATGACGCGT	69	-	chr2R	4035470	4035539	4035470..4035539	CG11546-RA,CG11546-RB,CG11546-RD,CG11546-RC,	FBgn0010504,	kermit,	1	.
CG7017-RA	CCAGGGATGCACACAGACCAACTACCACAACATCGCATGTTCCGTGTAGGCTGTCCCAGAAGATCG	66	-	chr3L	20203765	20203831	20203765..20203831	CG7017-RA,	FBgn0036951,	CG7017,	1	.
CG11880-RB	TGCTTCTTCTGGTTGCTGGAGACCTTCCTGAAGTTCCTCAATCGGAATGCCTACATCATGTGCGCCATT	69	+	chr3R	24953112	24953181	24953112..24953181	CG11880-RA,CG11880-RB,CG11880-RC,	FBgn0039637,	CG11880,	1	.
CG3795-RA	CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATCACCGAGAACTCCTGC	65	-	chrX	1603190	1603255	1603190..1603255	CG3795-RA,	FBgn0025378,	CG3795,	1	.
CG2104-RA	CCGCCTGCAGGTAACCTATTCCGTGAACTCGTCCAACTGGCATGGTGGATACTCGCTGGATAAGTTTCA	69	-	chr3R	1518311	1518380	1518311..1518380	CG2104-RA,	FBgn0037365,	CG2104,	1	.
CG14638-RA	ACGTGCTCAACAAGCAGGAGAACATTGGCAAGTGGATCACCAACCTGAATACTATCCGTAACAACAA	67	+	chr3R	70673	70740	70673..70740	CR14638-RC,	FBgn0037223,	TwdlU,	1	.
CG15756-RA	TGTTCTACACCGCCGATCATCGTGGCTACCATGTGGACATGCAGACATTATCCGTAGAGCAGCCG	65	+	chrX	13429023	13429153	13429023..13429065,13429130..13429153	CG15756-RA,	FBgn0030493,	CG15756,	1	.
CG11720-RA	ACTACGCTTTGTTTTTGTTATCATCAATTGATTTTACGTGTAAGAATTAATAAAATTAGTTAGACTGCA	69	+	chr3L	11506425	11506494	11506425..11506494	CG11720-RA,	FBgn0003373,	Sgs3,	1	.
CG11824-RA	CTGGCCCTGCTCAGGTTCTACGAGCCCGTCATCTTCCAGCCGAACATCATTCCCGTTTGCGTTCC	65	-	chr2R	4881492	4881622	4881492..4881543,4881608..4881622	CG34350-RA,CG34350-RB,	FBgn0085379,	CG34350,	1	.
CG31562-RA	TGATGAGGAAAATTCAACCACAGTCCTCCCCGTTGACTTCCAGTTCAATACTTGGACATCTCCGGCAGT	69	+	chr3R	2010916	2010985	2010916..2010985	CG31562-RA,	FBgn0051562,	CG31562,	1	.
CG30077-RA	TAGAGGGGGACATGCATACGATTAACCAGACCCTAGAGCTGGCCTACAAAGCCTCTCGAGCGACA	65	+	chr2R	10489206	10489271	10489206..10489271	CG30077-RB,	FBgn0050077,	blos1,	1	.
CG17293-RA	GCCGCTGGCGTTAACTCGGAAAGCATTAAATTGTACGACCTTCGCTCTTTCGACAAAGGCCCCTTCGTC	69	+	chr2L	8375018	8375087	8375018..8375087	CG17293-RA,	FBgn0032030,	CG17293,	1	.
CG6240-RA	GATCCCGACCCGAAGTACTCCTTTGGCTACGACATCCAGGATGGTTATACTGGTGACCTGAAGTCA	66	-	chr3R	15423970	15424036	15423970..15424036	CG6240-RA,	FBgn0038714,	Cpr92A,	1	.
CG17284-RA	TGAGCTCATGCTGTGATGTTCAAAAAAACGACAAGGCCATCAATTCGTGTCGCAAGTCCTTGCTGGGCA	69	-	chr3R	16955214	16955283	16955214..16955283	CG17284-RA,CG17284-RB,CG5793-RC,CG5793-RB	FBgn0038859,FBgn0038858	Obp93a,CG5793	2	.
CG1527-RA	GCGCACGCAATTGTTGCTGATCGACGACCAGACTCTGCAGAATGGCTCCAAGAAAGGCTAAAGTTCAGA	69	+	chrX	7828952	7829263	7828952..7828965,7829207..7829263	CG1527-RA,	FBgn0004404,	RpS14b,	1	.
CG10419-RA	AGAAGTTACCCATTTAACCCATGTACACAAGTCAATTATTTCTGGAAAATGTACTGAAATGTGACCATT	69	-	chr3L	19092227	19092296	19092227..19092296	CG10419-RA,	FBgn0036850,	Gem2,	1	.
CG9047-RB	GGCGAACACGGTGTCACCTACGTCCCTTTTCAAAGTCCTACTCCAAACAGCCTTTTTCTGGGCGAGAAC	69	+	chr2R	20772791	20772860	20772791..20772860	CG34413-RK,CG34413-RF,CG34413-RG,CG34413-RH,	FBgn0085442,	NKAIN,	1	.
CG31550-RA	GGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTAAAGGAGGACAACATTGGCTTCCAAATGCTGC	69	+	chr3R	1314673	1314742	1314673..1314742	CG31550-RB,CG31550-RA,CG31550-RC,	FBgn0051550,	CG31550,	1	.
CG15597-RA	TCAGGCAGCTTTAAATCGAAAGCAAACTTGGCTTTTGGCATTAGTTCTACTTGTGCCTCTCGAGCGT	67	-	chr3R	2110894	2110961	2110894..2110961				0	no match
CG11865-RA	GGGTTCAGGATGCTGGTCGTATGTAGGATATTTGGGAAGAGCAGACCAGACCCTCAATCTAGGCAGTGG	69	+	chr2L	15617394	15617463	15617394..15617463	CG11865-RA,	FBgn0028947,	CG11865,	1	.
CG31459-RA	CACCAGCGAAGAAAGCGTCCAAAATTTGAGTGCCTCAGAACTCAAGGAGTATTTTGCAAGGCCAAAGTT	69	+	chr3R	15666966	15667035	15666966..15667035	CG31459-RA,	FBgn0051459,	CG31459,	1	.
CG3217-RA	AGGCGCAGTCCATGATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAGGGACA	69	-	chr3L	709994	710063	709994..710063	CG3217-RA,CG3217-RB,	FBgn0025676,	CkIIalpha-i3,	1	.
CG7376-RA	CCGACGATCCTGAGGAGCAATCGAACTACAGAATACTGGCGTGCCAATTGGACGAGCAGCTACAGTTCA	69	+	chr3L	6170642	6170711	6170642..6170711	CG7376-RA,	FBgn0035689,	CG7376,	1	.
CG10470-RA	ACATGGGTGATGGTTTACCGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAAA	69	+	chr2L	19049291	19049360	19049291..19049360	CG10470-RA,	FBgn0032746,	CG10470,	1	.
CG30503-RA	CTGGAGGAAGCCTTTGGCCTGAGAAACGACGGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTC	65	-	chr2R	3331769	3331897	3331769..3331790,3331853..3331897	CG30503-RA,CG30503-RB,CG1669-RB,	FBgn0050503,FBgn0040513,	CG30503,kappaB-Ras,	2	.
CG5969-RA	GGTTCCAAGGGCTCCAAAACGGACTAATCCTCATCTACCCCGGACTGTTACCCTATTTCCATTAACTTT	69	+	chr3L	20467350	20467419	20467350..20467419	CG5969-RA,	FBgn0036998,	CG5969,	1	.
CG15343-RA	CAGACCGGGTGCAGTACCGCCTTCAGAAGGATGGGAAATGGAAATCCATGCACGTGTCCACCTAA	65	-	chrX	8166527	8166592	8166527..8166592	CG15343-RA,	FBgn0030029,	CG15343,	1	.
CG7296-RA	GGTTAGACCGATCCAAACTATACTGGTATTTGGAGTTAAGCGATAAGAAATGACTGTGAATAAAACCTA	69	-	chr2L	10686398	10686467	10686398..10686467	CG7296-RA,	FBgn0032283,	CG7296,	1	.
CG4066-RA	ACTTCTTCGAGGCGTTGTCACCTCTTTTCAGAACTTAGACATTTTTGCCAACCGATCAATCGAAGCCGT	69	+	chr3R	8138165	8138234	8138165..8138234	CG4066-RA,	FBgn0038011,	CG4066,	1	.
CG6815-RA	GCCATCGCCACAAAGAACACACGTATCAACAAGGGCATGTACAGGAATGTTTTGATGCACGGGCCG	66	-	chr3R	12088429	12088495	12088429..12088495	CG6815-RA,CG6815-RB,CG6815-RC,	FBgn0040237,	bor,	1	.
CG15661-RA	AGGTGCCCAAGGTCAAGCACATGGAGCGTCAAATCTCAGTGATGCTACTAAACAGTCACGCACCG	65	-	chr2R	17103886	17103951	17103886..17103951	CG15661-RA,CG15661-RB,	FBgn0034605,	CG15661,	1	.
CG14516-RA	GAAAACTGGATGGCGATCACAGAACACCTGATGGATGTGGACAACTTTGAGGACATTGCTCCTGCG	66	+	chr3R	24970039	24970105	24970039..24970105	CG14516-RB,CG14516-RA,	FBgn0039640,	CG14516,	1	.
CG12107-RA	ACGGAGGGGTATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCGGATTCCTGGTCACG	65	+	chr2R	3562470	3562535	3562470..3562535	CG12107-RA,	FBgn0033209,	CG12107,	1	.
CG2116-RA	CCGGGTGAAGGATTTGACGGATGACGAACAGATGCCGCAATTTGTGGTCAGGGAATTGGATATGAGCGA	69	+	chrX	8024193	8024262	8024193..8024262	CG2116-RA,	FBgn0030003,	CG2116,	1	.
CG15855-RA	ACAAGGAAAGCAAATAAAAAACCACAACTTTTGTATGGTATTTACAACAGGACTGCAAAGGCAAAGCAA	69	-	chr3L	3910368	3910437	3910368..3910437	CG15855-RA,CG15855-RB,CG15855-RC,CG15855-RD,	FBgn0004910,	Eip63F-1,	1	.
CG13592-RA	CCTGTCCGCATACTTCGAAGCACATTAGCTCCTCGGGACTTTGAGTACTCCAACGAACAGGGTGGC	66	-	chr2R	20418171	20418237	20418171..20418237	CG13592-RB,	FBgn0035019,	Ir60e,	1	.
CG9192-RA	AGGTCATCGGACACTCCCAACGTAGGCACCCGTCAGTTTAATCCATACGGTGGTCAGACCAATGC	65	-	chr3L	1237915	1237980	1237915..1237980	CG9192-RA,	FBgn0035193,	CG9192,	1	.
CG5063-RA	GCAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTACACCTACATGGAGTACCTGTGCCAC	68	+	chr3R	11187886	11187954	11187886..11187954	CG5063-RA,CG5063-RB,	FBgn0038327,	Trax,	1	.
CG31639-RB	GGCCAAAACAGCACTGAAAATCTCTGAATAAAAATTCACTATCCAAATTCCAAGTTAACACCTTAAGTT	69	-	chr2L	6154976	6155045	6154976..6155045	CG31639-RA,CG31639-RB,	FBgn0051639,	CG31639,	1	.
CG10524-RA	CGATGAAGACGAGCTCTTCTGGTCCATTTGCAATGAAATTCCATGGTTCCCAGTTTACATATCCGCCGA	69	+	chrX	12346799	12346868	12346799..12346868	CG11245-RA,CG10524-RA,CG42349-RD,	FBgn0259680,	Pkcdelta,	1	.
CG8707-RA	GGAGTCGACCAGTAAGATCGTGAAGGACGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGA	69	-	chr2R	4050464	4050533	4050464..4050533	CG8707-RA,	FBgn0033272,	RagC,	1	.
CG13138-RB	GGAGACCGCCAACTCTGCTCCAGACTTTGTCAATAGCTCCAACGTAGACCTAAGTCCACAGGAATCGGC	69	-	chr2L	10300351	10300420	10300351..10300420	CG13138-RB,CG13138-RA,	FBgn0032211,	CG13138,	1	.
CG13124-RB	GGCACTGTGCAAGCATCAGGACACCATGAGCAATTGATTCTGTTGTCGCATTGCATTTAGGGCCTGGAA	69	-	chr2L	9903610	9903679	9903610..9903679	CG13124-RA,CG13124-RB,CG13124-RD,CG13124-RE,CG13124-RF,CG13124-RG,CG13124-RH,CG13124-RI,CG13124-RJ,	FBgn0032156,	CG13124,	1	.
CG8766-RA	GCCCTACAACATCGACTGGATATTCCCTAGGCTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCA	69	-	chr2R	8641956	8642025	8641956..8642025	CG8766-RA,CG8766-RB,CG8766-RC,CG8766-RD,	FBgn0026619,	Taz,	1	.
CG11518-RA	TGTGTGAGCGTCTGCATGTGAAGCGATCGAAGAGGACAACGTCGCAACAAGAAGACGGAATGAAAGCTG	69	-	chr3R	27402172	27402241	27402172..27402241	CG11518-RA,	FBgn0043900,	pygo,	1	.
CG1998-RA	TCCTATTTTGTACACCTCATATATAGACGTATGGTGCAGACACACCCCTAGTATTCCGCACAACC	65	-	chrX	13303477	13303542	13303477..13303542	CG1998-RA,CG1998-RB,	FBgn0030485,	CG1998,	1	.
CG9656-RA	GGGACAAAACTAATCAAGACAACAAGAAGTAAACTGACAAAACACAATGCCAAACTGAGGACTCCTTGG	69	-	chr3R	3974497	3974566	3974497..3974566	CG9656-RA,CG9656-RB,	FBgn0001138,	grn,	1	.
CG31097-RA	AGGTGGGCAAAAGTTTCCGTACCAAGGTGTACACCAATCCCATCTTTGTGGAAGTCGTCAAGGAGCTGT	69	-	chr3R	21122106	21122175	21122106..21122175	CG31097-RB,	FBgn0051097,	CG31097,	1	.
CG13075-RA	TGCTCGGATACAACGACTCAGTCGCCCTCTGATTCTTCATCGACTGCTTCTTCAACTGAGTCCTCCTCC	69	+	chr3L	16078008	16078077	16078008..16078077	CG13075-RB,	FBgn0036563,	CG13075,	1	.
CG33349-RA	CGGACGCTGATCATCAACCTGCAAATTTCGAGGATGGGCATAAATCGGCGGGTTGTATTCAGCACGGAT	69	+	chr2R	2839453	2839522	2839453..2839522	CG33349-RA,	FBgn0053349,	ppk25,	1	.
CG9631-RA	GTCTATTTGGGCAGGCATGATCGCAACGAGAATCCTGAGAATGGAGCCTCCCTGGTTAGCGTGAC	65	-	chr3R	10051404	10051469	10051404..10051469	CG9631-RA,	FBgn0027563,	CG9631,	1	.
CG9710-RA	TCGAACCGAGATGGCATCTCCAAGCCCATCGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGT	69	+	chr3L	16802313	16802382	16802313..16802382	CG9710-RA,CG9710-RB,	FBgn0021768,	nudC,	1	.
CG16785-RA	GCGTGTGCTATCTGGAGCGAATCGTGTTCCACAATCAAGCAAGGATGCATGACGTCGAGCTGCAATG	67	+	chrX	676133	676200	676133..676200	CG16785-RA,CG16785-RB,	FBgn0027343,	fz3,	1	.
CG31790-RA	CTCCGGCTCTTGGAACTGATACCAATCTAATGGCGGAGAACTTGCTTGAGAGAGCCGAGAGACTCGCC	68	-	chr2L	18668182	18668250	18668182..18668250	CG43338-RA,CG43338-RB,	FBgn0263079,	CG43338,	1	.
CG40137-RA	CGATCGGTGACTATAGTTTAGAACTAAGTAATACAAAGAAAGAAATCTTAAGATTACCCTATCTC	65	-	chr3RHet	373298	373400	373298..373347,373384..373400				0	no match
CG10364-RA	TCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATGAGGTTCGTTCGCTTAATATGGATGA	69	+	chr2L	19578152	19578221	19578152..19578221	CG10364-RA,	FBgn0027949,	msb1l,	1	.
CG14102-RA	TTCCCGGAGTTGGGTGAATTTAAAGGTCTCCGATCCCTGCGCCTAATCTCACGTTGGACAGCAGAAGTG	69	-	chr3L	19793333	19793402	19793333..19793402	CG14102-RA,	FBgn0036906,	CG14102,	1	.
CG13086-RA	GCGCGACGCGGAAGAAATATCGCCGGATTCGACTCCACATTTTCCTGGCATTATCCCTATGGTTCCTGA	69	+	chr2L	19364403	19364472	19364403..19364472	CG13086-RA,	FBgn0032770,	CG13086,	1	.
CG15251-RA	AAATGGAAGCTGTAATTTATCGTTGAATCCCTATTCGTTTCTTCCCACATCCATCAGAATCTTTGT	66	-	chrX	9861509	9861575	9861509..9861575	CG43386-RC,CG43386-RD,	FBgn0263216,	CG43386,	1	.
CG33172-RA	CGCATCCAAAACGAGTACCATTGAAGCGCGACTAATGGCCATAGATGTTGTCCAGCATTCGGATGGGGA	69	+	chrX	15666169	15666238	15666169..15666238	CG33172-RB,	FBgn0053172,	CG33172,	1	.
CG9762-RA	CCCCATCTCGCGCTTTATTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTGCA	69	-	chr3L	12130973	12131042	12130973..12131042	CG9762-RA,	FBgn0011455,	l(3)neo18,	1	.
CG6083-RA	GAGCAGCAGATGAATAGACTTCTCAGTGTGGCCAAGCTTAAACCGGTAGTTCTTCAAATCGAGTGCCAC	69	-	chr3L	11618297	11618366	11618297..11618366	CG6083-RA,	FBgn0036183,	CG6083,	1	.
CG2006-RA	ACAAGTACTATGACCACAACGACCTCATCGCCTACCGACGACCCATCTAGCGTTCTAATGGACATACAT	69	+	chr3R	25316200	25316269	25316200..25316269	CG2006-RA,CG2006-RB,	FBgn0039664,	CG2006,	1	.
CG32815-RA	CCGGAATGGCATTGAGCAGTTCGTAATTCGGGTGAACAAAACCAATCCGAGTGCTAGCACCACCAGGA	68	+	chrX	827984	828052	827984..828052	CG32815-RC,	FBgn0052815,	CG32815,	1	.
CG4111-RA	TCGCCGTCAAGGCCTAGAATGCATCCAGATACTCCGACTGTCTATAGTGCGCGTTAAGGGTTCTTCGGT	69	+	chrX	5567464	5567533	5567464..5567533	CG4111-RB,CG4111-RA,	FBgn0029785,	RpL35,	1	.
CG10533-RA	CCCCCGTGGTTTGAGCTATCCATCGTTAATATTGTTTTACTGAAAAATCCTTCAATTATGAATAAAACC	69	-	chr3L	6129424	6129493	6129424..6129493	CG10533-RA,	FBgn0020639,	Lcp65Af,	1	.
CG33495-RA	ACACAATCGTTGCCAATCCGTCATGAAGACTCCGCTATTTCTCCTCTTGGTCGTATTGGCTTCCCTCCT	69	-	chr3R	25541024	25541093	25541024..25541093	CG33495-RB,CG33495-RA,	FBgn0250832,	Dup99B,	1	.
CG11922-RA	CGGCGAAAACGTTTCCGCGTCAAGCAGCTCGAGAAGGATATTTCGAACTGGAAATTAGCCGCCGC	65	+	chr3R	20921151	20921216	20921151..20921216	CG11922-RA,	FBgn0004898,	fd96Cb,	1	.
CG7430-RA	GGCAAACCCATCAACTTCTAAGCACTTCCCAATCTCTGCCAGATAGTGAAGAATTTTGCACCGCGTTTG	69	+	chr3L	17842224	17842293	17842224..17842293	CG7430-RA,	FBgn0036762,	CG7430,	1	.
CG33162-RA	CGCTGTGCTCACTCTAGATGAGTGCGTGTCATTTTCCCCATCCAATTTGTTTGGTGTTTTGTTAGCCGA	69	-	chr3L	8713244	8713313	8713244..8713313	CG33162-RA,	FBgn0011509,	SrpRbeta,	1	.
CG11490-RA	GCCCCAACTTCCACCTACTGTTTTCGGTGGCCATCCTCGATCAAGAGACTAGAGTGATCATCGACAGCC	69	+	chr2L	209460	209529	209460..209529	CG11490-RA,	FBgn0031233,	CG11490,	1	.
CG3982-RA	TTGCAGGATGTCGATGAGGCTTTTCTGGCATCCAACATTTTTGCTCGACCGTCCCGTGTCCGCCA	65	-	chr3L	9409832	9409897	9409832..9409897	CG3982-RA,	FBgn0035988,	CG3982,	1	.
CG11382-RB	TCCTCCGCTAAGCCAAAAAGAGATGCTGGCCTAAGTTTCGGAGGAATATCCAGCTATCACGGCCCTTCT	69	+	chrX	1104252	1104321	1104252..1104321	CG11382-RB,	FBgn0040367,	CG11382,	1	.
CG6191-RA	CTCAGCGCCAAGATGAATGACGTGAAGGGTGACGCACTCAAGAGCCTCATCGAGAAGACGGAGAG	65	-	chr2R	9468625	9468690	9468625..9468690	CG6191-RA,	FBgn0027581,	CG6191,	1	.
CG15764-RA	GGAGATGGAGTACAGTGGGCGATCCATGAGATATCTGATAGAGGCCATTCAGTCGGACTGCGAGAGCCA	69	+	chrX	5763771	5763840	5763771..5763840	CG15764-RA,	FBgn0029817,	CG15764,	1	.
CG14254-RA	GCCAAAGGATTACGGGCTTACTAAGCAGCAAAGGATTTCCGATTACCAGAAGCAAAATGCGTGTCTCCT	69	+	chr3R	22820599	22820668	22820599..22820668	CG14254-RA,	FBgn0039469,	TwdlC,	1	.
CG11767-RA	GGCAACGCAACTAACATTCCTGCTACTATGCTGTGGATTTTGCACCAGTACTTCCTATTCCGTCAGACA	69	-	chr2L	4165682	4165751	4165682..4165751	CG11767-RB,	FBgn0026394,	Or24a,	1	.
CG9921-RA	GATGTTTGTCGTTTTGGAAGTCGTGATAGTTCGAGAAAACTATCGCTTTATTAGTGTGAACGCACGCAC	69	-	chrX	16226076	16226145	16226076..16226145	CG9921-RA,	FBgn0030743,	CG9921,	1	.
CG14125-RA	AGGACAGCCCACTGGAGAAACGTCTAATCCATCAGATCAACCCACTGACAGTCCCACAGGTCAACC	66	+	chr3L	11968447	11968513	11968447..11968513	CG14125-RA,	FBgn0036232,	CG14125,	1	.
CG31662-RA	AGGCGCCTGAATCGTTCCAAGTGGCTTTTGGCATATGGCTTGGTGCTGAACCTTACTCTGCTGGTTTTA	69	-	chr2L	1794728	1794797	1794728..1794797	CG31662-RA,	FBgn0045501,	Gr22a,	1	.
CG33202-RB	AGGGGAATCGGGATCTGGGAAATTCCTGCCATCAAACGAATGCCATTTTGGAAAAATGCTACTCGAATT	69	-	chr3R	2356767	2356836	2356767..2356836	CG33202-RB,	FBgn0053202,	dpr11,	1	.
CG32080-RA	CGAGGGCAACTCAAGTTGATTGCATGTTCGGGCTCAGTTCATTTTCAACAGCATCAAGGATCAAATGCA	69	+	chr3L	10969223	10969292	10969223..10969292				0	no match
CG30179-RA	CATCTATTGCCGATCGTGCTACGCCAAGTTCTATGGGCCAAAGGGTGTGGGCTACGGAATCGGAG	65	+	chr2R	19965143	19965208	19965143..19965208	CG42309-RB,	FBgn0259209,	Mlp60A,	1	.
CG1528-RA	CGGTCATTCCATGTCCCAAGCTACCCTACAACGATCTGCAAACCACTTTTGTCATCGTAGAATTCCCGC	69	+	chr3R	27400356	27400425	27400356..27400425	CG1528-RA,CG1528-RB,CG1528-RC,	FBgn0028968,	gammaCop,	1	.
CG3413-RB	CTGTAGATGAGAGATTTTATCAATTTATCAATTTAGCCAAATGCAATCTGATTGTGCAACTGGGAACCG	69	-	chr2R	18186216	18186285	18186216..18186285	CG3413-RD,CG3413-RC,CG3413-RA,CG3413-RB,	FBgn0034718,	wdp,	1	.
CG33477-RA	AGCCTAGAGTCGCTGGATACCAGATGTGATCATGATTTCGTGGAATATTTCCATAGAGTGCCCGACTCT	69	-	chr2R	6297031	6297100	6297031..6297100	CG33477-RA,	FBgn0053477,	CG33477,	1	.
CG31441-RA	CCGGATGTTGAGAAGCTACAGCAGGATTTGTGGGACCACACGGATCAGGAAATGTGTGTAGCAATGGCA	69	+	chr3R	7062439	7062508	7062439..7062508	CG31441-RA,	FBgn0051441,	CG31441,	1	.
CG13198-RA	GGAATCAGGTGGAACTTTCGCTGAAGGTCAGCCTGTTTCAGTTACCCATTCGCAATCTGACCACCAGAT	69	+	chr2R	7542620	7542689	7542620..7542689	CG13198-RA,	FBgn0033640,	CG13198,	1	.
CG33197-RA	CGGCATGAAGCAAAAATAAAAACCACACCCAAAAATAAACCAATGCAATACCAATTCCAAGGGGCAAGT	69	+	chr2R	13240893	13240962	13240893..13240962	CG33197-RA,	FBgn0261642,	mbl,	1	.
CG5414-RA	ACTGCTATCAACAACTCTGCAAGAGCTTATGGCCCATTGTTCCCTTCCTGGTGGAGGAAAGCTGGAGC	68	+	chr3L	16096045	16096113	16096045..16096113	CG5414-RB,	FBgn0036569,	CG5414,	1	.
CG15066-RA	TTGCACGCAGATTGAGAATGAAGTGCCTGATTCTGTCCTTTGCAATTTTCGTTGTCCTGGCTTCCCA	67	-	chr2R	14270658	14270725	14270658..14270725	CG15066-RA,	FBgn0034328,	IM23,	1	.
CG8750-RA	AGAGACGTGTCCAAGAGTGGAAGTCTTCAGGCCAAGTCTGAGATAAAACGTAAACTTGGGGATGATGCA	69	-	chr3L	13835731	13835800	13835731..13835800	CG8750-RA,	FBgn0040812,	CG8750,	1	.
CG5810-RA	TGGTCGAGTGATTGGTGTCCAATTGGAGGCAAACCCAAAGCTGCATGAGTTGAAGATTTCGCAGCC	66	+	chr3R	16990311	16990377	16990311..16990377	CG5810-RA,	FBgn0038866,	CG5810,	1	.
CG11340-RA	GGTGTCGCCTTTGAACACCACGGATGCTTTCAGTGTGTCCATCAACCTGTCGCAATCGACTGTGAACAA	69	-	chr3R	27129973	27130042	27129973..27130042	CG11340-RA,	FBgn0039840,	CG11340,	1	.
CG32346-RA	TGAGTGGGAAACATGCTCAAGGGGCAGTGTGAATGAGGAAGCACTAACTCCCAGTCGCCAAACTGATG	68	-	chr3L	235909	235977	235909..235977	CG32346-RA,CG32346-RB,CG32346-RE,	FBgn0000541,	E(bx),E(bx),E(bx),	1	.
CG40228-RA	ACAGTGGAAAAACTGTAGAGGCTTTAAAAAATGGGGAGAAGGAAGTCTAAAAGAAAACCGCCTCCGAAG	69	-	chr3LHet	2190625	2190694	2190625..2190694	CG40228-RC,	FBgn0063670,	CG40228,	1	.
CG15776-RA	CAGCTGGCGTTCTCTCACCCCAGGCTTCGCTCAAGTCCCAAACATCGATTCGCTCGCAAGGACAG	65	-	chrX	5554483	5554548	5554483..5554548	CG42265-RA,CG42265-RB,	FBgn0259150,	CG42265,	1	.
CG14271-RB	GCGGTCCTGCGGGAATAATCACCGAGAATAAGTAGGACCTGCTGAAGAAAAGTCATATTCACAAGTCGG	69	-	chrX	3385511	3385580	3385511..3385580	CG14271-RB,	FBgn0029667,	Gas8,	1	.
CG11330-RA	GGTCTCCTACCGCAAGCTGTTCTTCAAGTCCATGGGCTACATAAGTTGCATTGAGTGGTCCCACGACGG	69	-	chr2L	6675592	6675661	6675592..6675661	CG11330-RA,	FBgn0000351,	cort,	1	.
CG40157-RA	CCGTAACATCTAATAAGGTGCAGACAGATCGAAGTGATGAAAATGGGCGGAATCCGTGTGAAGATGGGC	69	-	chr3RHet	1564987	1565056	1564987..1565056				0	no match
CG30385-RA	ATCCAGAGTTCTCTCCCACCATTGACCGAACCTTTGCTAGTCAGCCCTTTCAACGTCACCTGCGA	65	+	chr2R	3069480	3069545	3069480..3069545	CG30385-RA,	FBgn0050385,	CG30385,	1	.
CG40460-RD	AAACGCCGTGTAACCATGAGACTAGCCCCCTTGTGTTAGCATGTAGTGGGCCAAATTAGTTCCGTGCTT	69	-	chrXHet	65809	65878	65809..65878	CG17159-RB,CG17159-RA,CG17162-RB,CG17162-RD,CG17162-RE,CG17162-RC,CG17162-RF,	FBgn0039945,FBgn0039944,	CG17159,CG17162,	2	.
CG13036-RA	GCAAGCGTTTCTACGTCTTGCCCGTCTACATGCACAGCACCAAGCAGAGCATTCGATTATGGTGGCAAT	69	-	chr3L	16384415	16384608	16384415..16384452,16384576..16384608	CG13036-RA,	FBgn0036626,	CG13036,	1	.
CG31060-RA	ATATCATACATCCTTCATCAAATTGGATGCTTGCCTACAGCTGAAGAATTCCAAATGCTCAAAATGGGG	69	+	chr3R	23371246	23371315	23371246..23371315	CG31060-RA,	FBgn0046886,	Gr98c,	1	.
CG15917-RA	AGGATGACGACGATACCAGCTCGAGATTCACATACTCGACCACAACGACAACTGAGGAACCCGCATCCA	69	+	chr2R	13024108	13024177	13024108..13024177	CG15917-RA,	FBgn0034199,	CG15917,	1	.
CG40164-RB	AGGGAATCCGAAAACGCAAGCAAGGAGAAAATGAAGCATTTGAAGATTTCCAGGAAACCATGGAACGGT	69	+	chr2RHet	987490	987559	987490..987559				0	no match
CG15461-RA	TGACGATCATCTATAATGACCACTTCTGCTGGACCTTCATAAAGAGCTATGGACTCTTCTCGCTGGCGA	69	+	chrX	20357440	20357509	20357440..20357509	CG15461-RA,	FBgn0040649,	CG15461,	1	.
CG7330-RA	TCCCCTTAGTCAGTCGCATCGGACATCTTTGTTAATCATCCATCTCTCGGCACTCACATCCAGCTGCCA	69	+	chr3L	18146515	18146584	18146515..18146584	CG7330-RA,	FBgn0036780,	CG7330,	1	.
CG40192-RA	GTACAAGGTCCACATATTGTGCCGTTACTTCTCGGTGCGTCCTCTTTGCGTCCTCCACGGCCTAC	65	-	chr2RHet	359385	359450	359385..359450				0	no match
CG2448-RA	CCTGAACGGGATCATTCTGGATATCCACCTGCTTTCCATGTCCGATCATCTGGTGTGCACCTTCT	65	-	chrX	11601358	11601423	11601358..11601423	CG2448-RA,	FBgn0030327,	FucT6,	1	.
CG2922-RC	TTTGTTGTTCTACAAGACCGAGGTCCTGTCCGAGGAGATCATCTTGCGCTGGTACAAGGAGGGCC	65	-	chr3R	1422657	1422722	1422657..1422722	CG2922-RA,CG2922-RG,CG2922-RC,CG2922-RF,CG2922-RD,CG2922-RB,CG2922-RE,	FBgn0250753,	exba,	1	.
CG31054-RA	TGGACAAGCCGCTTATAGAGCCAGTGAAGAAGCTCAAGTTCCAGATCAAGGAGCACGTGGGCATCTTGA	69	+	chr3R	23787094	23787163	23787094..23787163	CR31054-RB,	FBgn0051054,	CR31054,	1	.
CG1163-RA	ACGCCGCACTTTACTATTTAATTTCGATTAAAACAATAGAAAAGCAGTGATGGATGATGCGGACTACGA	69	+	chr3R	1197559	1197628	1197559..1197628	CG1163-RA,	FBgn0003275,	RpII18,	1	.
CG4236-RA	CGGTCACACTGCCAAGATTAGCGATTTCTCGTGGAACCCCAATGAGCCATGGATCATTTGCTCCGTGT	68	+	chr3R	11052899	11052967	11052899..11052967	CG4236-RA,CG4236-RB,	FBgn0015610,	Caf1,	1	.
CG9086-RA	GCTGGTGGAGGAAGAATCGGAAGAGAATCAGGGTCATGGGCAAACAGTGGTGATACCCTGTGAATCGCA	69	-	chrX	16852316	16852385	16852316..16852385	CG9086-RA,	FBgn0030809,	CG9086,	1	.
CG6298-RA	GAATGCAAGCGCACCTACTACTCCACCATCCGTGACTCGAACATCTGTGTCTCCACTCCTGCTGG	65	-	chr3L	17540139	17540204	17540139..17540204	CG6298-RA,	FBgn0023197,	Jon74E,	1	.
CG40446-RA	CGAGCTCTAACTGAAGATGCAAGAACACCTACAGGAGTACATCGTTGGCGAATATTAAAAGGCGAAGAT	69	+	chrYHet	233289	233358	233289..233358	CG40446-RB,	FBgn0046323,	Ory,	1	.
CG3403-RA	AGGGACCAGGCTAGCATTCAGTTTCTGCCAGTGATTTTCTCATCAAGGCGTAGGCACAGACGTTGTGGA	69	-	chr2R	2583930	2583999	2583930..2583999	CG3403-RB,CG3403-RA,	FBgn0259483,	Mob4,	1	.
CG33469-RA	TACGTCGTTGGATGCTGATACGATAGAATATTTCGGAATATTCAGTATTGACGAACCAAATGTCGCTGC	69	-	chr2R	10493549	10493618	10493549..10493618	CG33469-RA,	FBgn0053469,	CG33469,	1	.
CG31389-RA	GCAGCAGGAAAACCACAAGCAGGAAGAAGGAAGCCAAGCCTACACCTGTGCAGAAACACCGATACATGT	69	+	chr3R	7467441	7467510	7467441..7467510				0	no match
CG1957-RA	TGCGCGCGTTTTTACTCCGCAGAAGGGGGAAATCATTGATGTCACCAGTGAGATTCACATCTATCAGGT	69	+	chr3R	24862224	24862293	24862224..24862293	CG1957-RA,CG1957-RB,	FBgn0027873,	Cpsf100,	1	.
CG32094-RA	CGCGGGGTCGCATCTCTGGTTACATGAACTTCGAGGTCTGCCTCTATCTAATCGAACAGCCACGAGGAA	69	-	chr3L	11804887	11804956	11804887..11804956	CG32092-RB,	FBgn0259140,	CG42255,	1	.
CG15633-RA	ATACCTCATCGTGGAGATCAACAGCCATGTGGCACTGTTCCGGGATATGCTGATACACGTCGGCC	65	.	.	.	.	.				0	no match
CG40373-RA	GTTCCCGTACTGGTCCCGTACTCGGTCCTCTCGTACTCGGTCCCGTACTAATCTCGTACTCGGTC	65	.	.	.	.	.				0	no match
CG8611-RB	GATTACTCGCCGTAATATGTTCGTTCATTTTTTGTGTGGAAAATATTAGAAATCCATTTTCCGCTCACT	69	-	chrX	17307965	17308034	17307965..17308034	CG8611-RA,CG8611-RB,	FBgn0027602,	CG8611,	1	.
CG17490-RB	GCAGGGGACATTTTGGAAGCTTTTGATATGCTATGACAACCGCATCAATGTCCTCCTACTGCCCACAGA	69	+	chr2L	22432482	22432551	22432482..22432551	CG17490-RE,	FBgn0040009,	CG17490,	1	.
CG15882-RA	TGAAGGAGCTGCTCAGTGAGGACACACTCTCTGAATTGGCTACCCCGAATGATGTCGACATTGCCG	66	-	chrX	19018197	19018263	19018197..19018263	CG15882-RA,	FBgn0030983,	CG15882,	1	.
CG5535-RA	TCAAGTTGGACATTCTCACATGGATTCGCTTCAGTATATGGATCGCCATAGGCCTGGCAATCTTCCTG	68	-	chr3L	17845906	17845974	17845906..17845974	CG5535-RB,CG5535-RC,	FBgn0036764,	CG5535,	1	.
CG7464-RA	GATGGCCAAGAAGGTGAGCTTTACGGCCTCAAACCGGAACAATATGGCTTTGTACGACAACGGCGG	66	+	chr3L	21962679	21962745	21962679..21962745	CG7464-RC,	FBgn0029091,	CS-2,	1	.
CG14087-RA	TGACCACTGGTGAGGCGGATAATATGCTAAAGAAAGTGTACCCCATTACGGCCAATCACCGAAGGGCCA	69	+	chr3L	19383029	19383098	19383029..19383098	CG14087-RB,	FBgn0036868,	CG14087,	1	.
CG1621-RA	CGCGACTGACTAACTCTGTGAATCTGCCTACATACGTAGCATGTAATCAGTATTCCGGCCTGCTTTCCT	69	-	chr2R	3378417	3378486	3378417..3378486	CG1621-RA,	FBgn0263240,	Coop,	1	.
CG15337-RA	CGGGTCCTTCGATGGTCCAGAGATCGCGTATCAGGATCATGAATATCGTCCGGAATCTGAGCAACCGGT	69	+	chrX	8055328	8055397	8055328..8055397	CG15337-RA,	FBgn0030014,	CG15337,	1	.
CG8715-RC	AGGCGTAAAACGATTTAACAGATTTAAGAGTGTAAGAGAGAAACCGGAAATGCAGAACAGTAAATTAAA	69	+	chr2R	3966076	3966145	3966076..3966145	CG8715-RC,CG8715-RA,CG8715-RB,CG8715-RE,CG8715-RF,CG8715-RG,CG8715-RH,CG8715-RI,	FBgn0020279,	lig,	1	.
CG32169-RA	ACATTTCAAAGCGAAGATGTGGTAGACAAAGTTTGCGAAATTCATTTCCACGAGATAAACAACAAAATG	69	-	chr3L	17071215	17071284	17071215..17071284	CG32169-RA,CG32169-RB,CG32169-RC,CG32169-RD,	FBgn0260943,	Rbp6,	1	.
CG13159-RA	CCACTTGATACGATCCTCATCACCTGAATAGCCAAATAAAAACACCAAATACCAAAAAACAAACAA	66	+	chr2R	8263130	8263196	8263130..8263196				0	no match
CG17390-RA	AGGGTCCAGCCAAACTCTGTGACAAGTGCTGCCGTAAGCATAACCTAAATGGAAAACGTGGCAAGCACT	69	+	chr2R	10352074	10352143	10352074..10352143	CG17390-RB,CG42702-RC,	FBgn0261613,	Oaz,	1	.
CG7288-RA	TGGATTTCGATTTCGAGAAGCTTTGCTCCATTTCGCTGACGAGGATCAATGTTTATGCCTGCCTGGTGT	69	+	chrX	18752590	18752659	18752590..18752659	CG7288-RA,	FBgn0030969,	CG7288,	1	.
CG17437-RA	GGGCAAGTGCCTGAAGACGTATACGGGTCACAAGAATGAGAAGTACTGCATATTCGCCAACTTCTCGGT	69	+	chrX	2481337	2481406	2481337..2481406	CG17437-RA,CG17437-RB,	FBgn0040066,	wds,	1	.
CG41133-RA	AAAAAGTCTGGGTCAAGACACTCAGTTATAGGCCACAGCAGTTCAGACGAGAAAGGAAACGCGGTTGCA	69	+	chr3RHet	421785	421854	421785..421854				0	no match
CG32050-RA	CGCGGACATGGAGTACAGACACGTATCGGATGTAATTGCCAACTATGAGCAATTGGCCAAAAAGGAGTT	69	+	chr3L	9819814	9819883	9819814..9819883	CG32050-RA,	FBgn0052050,	CG32050,	1	.
CG9812-RB	TTCGAGATTCGTACGACCTCTGAAGCATCAAAGATACAGGAGGAATTAATAAAGCATCTGCACACTGGA	69	-	chr2R	19300119	19300188	19300119..19300188	CG9812-RB,CG9812-RD,	FBgn0034860,	CG9812,	1	.
CG2054-RA	CCGGTTGGCCCAGTGAGAAATTGAGGGAGTGCTCCGGTAGCCATAGTCTTAGAAACACATCACCTTGTT	69	-	chr3L	1752579	1752648	1752579..1752648	CG2054-RA,CG2054-RB,	FBgn0022702,	Cht2,	1	.
CG9344-RA	TTGCTGCCAAAAGGTTTTGTAAACTGCATTTATTTTGAAATCATCTATTGAAAATGTCCCGCAAA	65	+	chr2R	16864606	16864671	16864606..16864671	CG9344-RA,	FBgn0034564,	CG9344,	1	.
CG9540-RA	GGTGGCCTGCAACTATGCTACCACCAATATGATCGGACGCCAGATCTACTCCAGCTGTGACTGGG	65	-	chrX	14677118	14677183	14677118..14677183	CG9540-RA,	FBgn0020508,	Ag5r2,	1	.
CG3556-RA	GCGGTGCCCTTCGGACTTAGTTCCTCTGCAGAAGAGTCGGATGCCAAGAACATCTCCTACACGTACAC	68	+	chrX	4426908	4426976	4426908..4426976	CG3556-RA,	FBgn0029708,	CG3556,	1	.
CG15742-RA	AGTTGCCACCCATCGATCTGGCCGAAATACTTATGGACATGCTAAAGATGCAAATATTGCGCCGCAAGA	69	-	chrX	13152030	13152099	13152030..13152099	CG15742-RA,CG15742-RB,CG15742-RC,	FBgn0030462,	CG15742,	1	.
CG14446-RA	AGCAATCCGATTGTCAACTACGACAATGGACGCCGTGTTAGCTCCTTTGACCAACAGCCCAAGCTG	66	+	chrX	6123901	6123967	6123901..6123967	CG14446-RB,CG14446-RC,	FBgn0262730,	CG14446,	1	.
CG33297-RA	AGGAGTCAGAGGAAGGAGAGAATCGGAGAATCAGCATGGGAGGAGACCCACTAAACGCGACACACAACT	69	+	chr2L	8369885	8369954	8369885..8369954	CG17291-RA,CG17291-RB,CG17291-RC,CG17291-RD,	FBgn0260439,	Pp2A-29B,	1	.
CG31629-RB	ACGTCGAAAGCAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCCAAGGGGGAT	69	-	chr2L	7132702	7132771	7132702..7132771				0	no match
CG3460-RA	GGGAAATCTCTCGCCATTGGTTCTGGTCAACCGGGTGTCTAGCAGCATTCACTTGATTGATCCCCTGA	68	-	chrX	2077682	2077750	2077682..2077750	CG3460-RA,	FBgn0023542,	Nmd3,	1	.
CG31296-RA	TGCTAAATGCAAGGGTATTCCAGTTACCCCTCGATTTATCCATCGGTCGACAAGCTTATGTGCCAGCCA	69	-	chr3R	11356243	11356312	11356243..11356312	CG31296-RA,	FBgn0051296,	CG31296,	1	.
CG15245-RA	CTGATCTTCTACAATCCGCATACCAAGCCACTCACCAGTCAGCTCCTCGTGTCCCGCAGGCTCAC	65	-	chrX	9762297	9762362	9762297..9762362	CG42262-RA,	FBgn0259147,	CG42262,	1	.
CG15204-RA	CAGGATGACCTGCAGAATGCCCTGGACTCGGACAGCAACGAGAGTACCGACTACCGTCACCAGCG	65	-	chrX	10863011	10863076	10863011..10863076	CG15204-RA,	FBgn0259241,	CG42339,	1	.
CG30363-RA	CTGGCTACGACCAAAGGACTATTGCTGTCCCGATCAGGAGGTATATCAGCCCATGAATCGCCGCA	65	-	chr2R	4252367	4252432	4252367..4252432	CG30366-RB,CG30363-RA,	FBgn0050366,FBgn0050363,	swif,cola,	2	.
CG40209-RA	GAAATGCAAAGTGATGAGAATTTCAGAATTCAGGATTCCAAATTTTCCAAAAAACCAAAGTTACAACTA	69	.	.	.	.	.				0	no match
CG1142-RA	TGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAGTGCTCGATGTCGTGAATTCCCTGCCTGACCGAA	69	-	chr3R	3299242	3299311	3299242..3299311	CG1142-RA,	FBgn0037504,	CG1142,	1	.
CG5583-RA	CGCTCCATCAGGCAGTACTACAAGAAGGGAATCATGAAGAAGACGGAGAGGTCACAGCGGCTGGTC	66	+	chr3R	23572701	23572767	23572701..23572767	CG5583-RA,	FBgn0005659,	Ets98B,	1	.
CG3352-RA	CCTCGGCTGGGAGTATCTGCTCAATTGGGGACCTAGCTACGAAAATCTGATGGGCGTCTTCAAGGACAT	69	-	chr2L	4199249	4199318	4199249..4199318	CG3352-RA,	FBgn0001075,	ft,	1	.
CG3073-RA	CGACTCCCTGGCCAAATACCTAAACGTGGCTCTGCTGATTAATCCCGATGTGACCACCTTTTGGCACAT	69	-	chrX	2155629	2155698	2155629..2155698	CG3073-RA,	FBgn0027296,	l(1)G0144,	1	.
CG31523-RA	GTTAAGTGATTAGCGTGTAACTGAACCAGATTGAAGAACAAGACGAGCAAGAAACTTGGCAGAAGTAGC	69	-	chr3R	292302	292371	292302..292371	CG31523-RC,CG31523-RB,CG31523-RA,CG31523-RD,	FBgn0051523,	CG31523,	1	.
CG1567-RA	CCCCGATTCCCCTCACATCTGGCGAAAAAACCGTAAAGGGTAATGCAACAAGCGTGTCGGTAGCGAC	67	-	chrX	10858531	10858598	10858531..10858598	CG1567-RA,	FBgn0021742,	C901,	1	.
CG15427-RC	TCGTCCCCCCTGGTCCCATTCATCCATTTCCGTAGACAAAAGTGACTCCCCCTCAAATCTCAGTTGAAA	69	+	chr2L	4315404	4315473	4315404..4315473	CG15427-RC,	FBgn0010473,	tutl,	1	.
CG31014-RA	CGGCTGCAGAATATGTACCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGAAA	69	-	chr3R	26330805	26330874	26330805..26330874	CG31014-RA,	FBgn0051014,	PH4alphaSG1,	1	.
CG6443-RA	GCGGCCAAGCGTAAGTCCTCCAAAAAGGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGA	65	+	chr2L	10729860	10729925	10729860..10729925	CG6443-RA,	FBgn0032290,	CG6443,	1	.
CG11807-RA	CGACCTGACAGGCAATTTGCTAACCCAAATCGATGGCAGTGTACGAACAGCTCCAAAACTCAGACGCCT	69	+	chr2R	11091026	11091095	11091026..11091095	CG11807-RA,	FBgn0033996,	CG11807,	1	.
CG3829-RA	AGGACGACATCACCAAGTTCAGCATCATTACCCAGTTTAACGGCATGCCCCAGTTGGACTACTGG	65	+	chr2R	20876857	20876922	20876857..20876922	CG3829-RA,	FBgn0035091,	CG3829,	1	.
CG17358-RA	GCCTTGCCCTCATACGGAAAACGATCAAGAAATACTAGAGGATTGGATCTAATCGGGTCGAGGCTCTGT	69	-	chr3R	7504242	7504311	7504242..7504311	CG17358-RB,CG17358-RA,CG17358-RD,	FBgn0011290,	Taf12,	1	.
CG12170-RA	CAACATTGAGCACCTCGATGTGGACGTCAATGTGGTCACGAAAGCTACTGATTGGTCGGCGGACC	65	+	chr3R	1464159	1464224	1464159..1464224	CG12170-RA,	FBgn0037356,	CG12170,	1	.
CG6041-RA	CGGTGCCCATAGTGTCGTATACAACCTGTCGCATTTCATACAATTCGATTCCGGTTTCCCAGGTGTGCG	69	+	chrX	5843798	5843867	5843798..5843867	CG6041-RA,	FBgn0029826,	CG6041,	1	.
CG9746-RA	TGCCATCCCACAGAGCCTTCATACCTGATCTCAGCCTCGCAGTCAAACAATGAGGTATCCGTGTGGAAT	69	-	chr3R	5067113	5067182	5067113..5067182	CG9746-RA,	FBgn0260935,	ird1,	1	.
CG9701-RA	GCTGGTTCGGTCATCCCATCTTTTCCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCGCATTCGGA	69	+	chr3L	16730904	16730973	16730904..16730973	CG9701-RA,	FBgn0036659,	CG9701,	1	.
CG32139-RA	GGCAGCGAGGAGTTGAACTTGTCCATGACCTAGGAACAAGAAAGGGGATCGCTTCTTTTCCGTTCGCAA	69	-	chr3L	14106039	14106108	14106039..14106108	CG32139-RA,	FBgn0042630,	Sox21b,	1	.
CG6027-RA	ATTGTACAGATGATCCCGGATCGATTTGAGAAGCAAGAACACTTATCATTGGCCAATCCCGTTCGGCTT	69	-	chr3R	14871501	14871570	14871501..14871570	CG6027-RA,CG6027-RB,	FBgn0004876,	cdi,	1	.
CG30475-RA	CGACACTGGTGACTACGATGTGCCGCATCCGCACCCGTATACGCATCATTATATGCAGACGACGG	65	-	chr2R	10839754	10839819	10839754..10839819	CG42783-RG,	FBgn0261854,	aPKC,	1	.
CG12240-RB	AGCACGCCCAAGAAAGTGTACCTGTCCAACTTGACGTACTCGATTGTGAGGAAGATCCGTGTGGGC	66	-	chr2R	20045450	20045516	20045450..20045516	CG42568-RA,CG42568-RB,CG42567-RC,	FBgn0260770,FBgn0260775,	CG42568,DnaJ-60,	2	.
CG31405-RA	TCTTTGGCGTATTTCGCATAAATCGCTCTTTGGCTTTCCGGAGTGCATCACTCATCCTGGTCCACGTGC	69	-	chr3R	5821306	5821375	5821306..5821375	CG31405-RA,	FBgn0045473,	Gr85a,	1	.
CG7365-RA	GGCCCGTTCTCCTCCGTGAATTACTCCCTGTGATATCGCACCTAAGTCTTCTTCGCTAGCTTGCCAGTG	69	-	chr3L	20117486	20117555	20117486..20117555	CG7365-RA,	FBgn0036939,	CG7365,	1	.
CG7338-RA	TGCTGTCCTGCAATCCAGATCGTATTGTTCTCAAGCGCGTTGTTCTCAGCGGTCATCCCATGCGTATCA	69	+	chr3L	21330664	21330733	21330664..21330733	CG7338-RA,	FBgn0037073,	CG7338,	1	.
CG2151-RB	GGCGTGACTGTGCAGAAGGACAAGATTCCAGTGGACTCCCAGGAGGCTACCAATGTGGCAAACAT	65	+	chrX	8141148	8141213	8141148..8141213	CG2151-RA,CG2151-RB,CG2151-RC,	FBgn0020653,	Trxr-1,	1	.
CG7643-RA	CCCTCCACCTCGAAGACGAAGCCGGATGCAGACTTCATTACCCCCCAAGTACGAACAATTGGTTCC	66	+	chr3R	13497947	13498013	13497947..13498013	CG7643-RA,	FBgn0000063,	ald,	1	.
CG6008-RA	TCAAGGGAAAACTCGATTATTTACGAAATTTGCGACTGAAATTTCTTCCCCAACGCGATGTCTGC	65	+	chr3R	14853112	14853177	14853112..14853177	CG6008-RA,	FBgn0027785,	NP15.6,	1	.
CG3983-RB	GCCTCCGGAAGTTCAGGAAGGGCAAAGTGTGCATATAAGTGCCTCGATAGTACACTCAGAGGCTCGCG	68	-	chr3R	12896815	12896883	12896815..12896883	CG3983-RA,	FBgn0038473,	ns1,	1	.
CG11418-RA	TGACACCGCCCATGTACATACATACTTAGGATAAGCCACAACTTCACATTCATGGTGAGTCCAGCTTAA	69	-	chrX	1239192	1239261	1239192..1239261	CG11418-RA,CG11418-RB,	FBgn0024360,	CG11418,	1	.
CG40382-RA	AGCATACAAATACAAACAACACAACATCGGACTATTCTTCAAATCAACTTTCTGGGATTGTTGACCCAC	69	+	chr3LHet	1692271	1692340	1692271..1692340				0	no match
CG40305-RA	TCCACCCGTACCATTCTCCTCTGGACAGAATTTTTTGGTGATTCGCGATGGAAGCTTTCCTGGGACACT	69	-	chrX	22412255	22412324	22412255..22412324	CG40305-RB,	FBgn0044872,	FucTC,	1	.
CG13012-RA	CGTCTGCGGTTTCTGCAACTGGGGCAGTACGGTCGAAATTCCGCGAACATGGACTTGAAAATGGAG	66	.	.	.	.	.				0	no match
CG1034-RA	TGGGCGAATCGAACCAATATCAATGCACGATGGATACGATAATGCAAGCGTATAATCCCCATCGGAACG	69	-	chr3R	2582435	2582504	2582435..2582504	CG1034-RA,CG1034-RD,CG1034-RE,CG1034-RF,CG1034-RG,	FBgn0000166,	bcd,	1	.
CG6329-RB	GAGGTGAACTGCAGCAAACAGGAGCCTCTGGAGCATCTGAAGGACAAATACAAGCCCACCCTGTG	65	+	chr2R	9718138	9718203	9718138..9718203	CG6329-RA,CG6329-RC,CG6329-RB,CG6329-RD,	FBgn0033872,	CG6329,	1	.
CG9665-RA	CCCTCTGTGGCTGATTTTCGTTTGACAGATCCAGATTTCCGACTGGCTAATGATTTTGGCAGGGGTGCT	69	-	chr3L	16933237	16933306	16933237..16933306	CG9665-RB,	FBgn0036680,	Cpr73D,	1	.
CG11656-RA	TCGGGCCCATAAGGAAAACAAGGAAAGCAAAATCGAGGAGTTCCAAGAAGAACAATAGTAAGGCCTCCT	69	+	chr3R	8835953	8836022	8835953..8836022	CG11656-RA,	FBgn0038109,	CG11656,	1	.
CG4035-RE	TCAAGCTATCTCTCTTTCGCGGTCACTCGTTCTCTTTTTCTCTCCTTTCGCATTTGCATACGCATACCA	69	-	chr3L	9395075	9395144	9395075..9395144	CG4035-RE,	FBgn0015218,	eIF-4E,	1	.
CG1968-RB	TGGGCTACATAGCCGATGGAGTTTGTCATCCTCTAAAGGTTCGAGTGGAGACGATACTGCAGGCGGAGA	69	+	chr2R	5175494	5175563	5175494..5175563	CG1968-RA,	FBgn0033401,	CG1968,	1	.
CG1448-RA	CTGGGCGGTGCTTTCATGTCCTACGGTACGGATGTGCTCAAGTTCTCCAACATGGATCAGGACAAGC	67	-	chr3R	24680812	24680879	24680812..24680879	CG1448-RA,	FBgn0028373,	inx3,	1	.
CG15387-RA	AGGGTCATGGGTTTCCTGGAAACCGCGAGGGATTAGTCCAGTTCTCCCAGCTCATCAGAGAAATGG	66	-	chr2L	2225895	2225961	2225895..2225961	CG15387-RA,CG15387-RB,	FBgn0031403,	CG15387,	1	.
CG1347-RB	CCACACCGTCATTGGACCCTTCGCAGACAGTTGTGGATATCAACCAGATCCCTCTGCCCTACTACG	66	+	chr3R	1503214	1503280	1503214..1503280	CG1347-RB,	FBgn0037363,	CG1347,	1	.
CG14992-RA	TGTATGCCAGCAAGGATATGGTGTATAAGCAGAATCTCACACCCTTAAAGAACGGTGCAGCACCC	65	+	chr3L	4112930	4112995	4112930..4112995	CG14992-RA,	FBgn0028484,	Ack,	1	.
CG1966-RA	TAGGGACATGCAGCTACCGTTTAGGCCTAGCGATATGAACGGGGAAGTCAAAGCTTGCTGAGCCG	65	+	chr3R	27625199	27625264	27625199..27625264	CG1966-RA,	FBgn0027620,	Acf1,	1	.
CG32042-RE	GTCTCTCTTCCTCTCTGGAGCTCTGTTTAGTTTTACTGTCGCTCAAAAAGCTGGAAATTCCCAAGCCGC	69	+	chr3L	9331133	9331202	9331133..9331202	CG32042-RF,CG32042-RC,CG32042-RE,	FBgn0035975,	PGRP-LA,	1	.
CG2071-RA	GATATGCCAGGGTCTTTTACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCTAAGAATGTCAAGCAC	69	-	chrX	20833721	20833790	20833721..20833790	CG2071-RA,	FBgn0011834,	Ser6,	1	.
CG6356-RA	GGACAGAAACTCAAGAATGGTCCCCTGAAGTCCATCATCGAGCTGTATGCCAACTCCAAGGTGCGC	66	+	chr3R	20113223	20113289	20113223..20113289	CG6356-RA,	FBgn0039178,	CG6356,	1	.
CG4042-RA	ATCGTGATGATGCAGAAGCCCATCGATCTAAGTCCGCGGAACATTCGACAGTGGTGGGAGAACCG	65	-	chr3L	20763840	20763905	20763840..20763905	CG4042-RA,	FBgn0037018,	CG4042,	1	.
CG9576-RA	GGCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCCAAAACTACGTCTGCAAGGTTTGCTCA	69	-	chrX	20055703	20055772	20055703..20055772	CG9576-RA,	FBgn0031091,	CG9576,	1	.
CG11596-RB	GCACCGGCATCCGTACCAAGTACGCACAGAACCCGTCTTCAATGAAACAGAGCGAGTACCAGAGTCTTT	69	+	chrX	1823951	1824020	1823951..1824020	CG11596-RB,CG11596-RC,CG11596-RA,	FBgn0023522,	CG11596,	1	.
CG6137-RA	CCAGAGCGCTACGACTTCTTCCTAGTGTCCCAGGCTGTTCGGATAGGAACTGTGTCGCCTACCAG	65	-	chr2L	10998139	10998204	10998139..10998204	CG6137-RA,CG6137-RC,	FBgn0000146,	aub,	1	.
CG9148-RA	AGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCATGGATGATCTGAGCCCCGACGAGA	69	+	chr3L	1299113	1299182	1299113..1299182	CG9148-RC,CG9148-RB,CG9148-RA,	FBgn0025682,	scf,	1	.
CG15362-RA	CCGACATGAGTTTCGGCAACAAGATCAGCTTTATGCCCTCATTCTGGTTCAAAAAGTCCAGTGATGCGA	69	+	chr2L	1981776	1981898	1981776..1981832,1981885..1981898	CG15362-RA,	FBgn0031378,	CG15362,	1	.
CG15438-RA	GATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCGAGATGAACTGCTTC	65	-	chr2L	4447509	4447574	4447509..4447574	CG15438-RA,	FBgn0025684,	CG15438,	1	.
CG9614-RA	CTACGTGAGAGCTCCGTGGTACTTCGTAGAGCGCAAAGCAGCTTTCCCGGATCTACCATTGCCAC	65	-	chr3L	19292882	19292947	19292882..19292947	CG9614-RA,CG9614-RM,	FBgn0003089,	pip,	1	.
CG31723-RA	GCTCTCACCAGTGCACTTTTGGGGATCCACAGAAAAATCCGCGAGTTCGGTAGCTCAGGCGAAATCAG	68	.	.	.	.	.				0	no match
CG1676-RA	AGACGAGGAGGATCCCCTGAATGAGCTGCGTAAAACAGTGCGTCTTTACCAGGCAGGGAACTACAG	66	+	chrX	20296628	20296694	20296628..20296694	CG1676-RA,	FBgn0031114,	cactin,	1	.
CG31355-RA	CCGTGAACTTTGACAAGCTGTGCCTCATAATGATGCCAGACAAACGTCTCGAAATGAGCTCGCACCGGG	69	+	chr3R	8448370	8448439	8448370..8448439				0	no match
CG1631-RA	GCGGCAAAAGTGTGACTCCCTCAGGGAACAGACAATCCTGGCTTTTTGTGCGAGTCAACAGCATCCATA	69	+	chrX	20199513	20199582	20199513..20199582	CG1631-RA,	FBgn0031101,	CG1631,	1	.
CG10481-RA	TGCGGTTGATACGAGTCCAGAGTTTCGCTACACCTTTGTCAGTCTGTTTAGGGGTCCCATTTCGGGTGT	69	-	chr2L	19891483	19891552	19891483..19891552	CG10481-RA,CG10481-RB,	FBgn0032827,	CG10481,	1	.
CG6069-RA	TCGGGTCACACTGCATCGACACCTCTAGGCCCGGCATGTACACCAACATCAGAAGAGTAAAACGATTCA	69	-	chr3R	22016141	22016210	22016141..22016210	CG34129-RA,	FBgn0083965,	CG34129,	1	.
CG9494-RA	GGGATGACATCCAGGATGAGTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCC	65	+	chr2L	8935497	8935562	8935497..8935562	CG9494-RA,CG9494-RB,	FBgn0032074,	Tsp29Fa,	1	.
CG15515-RA	GATGCTGATTCGCATCCGGATACCTCGACCGTGTTCCAGACCTACGACTTGGTATTGACCAGGGG	65	+	chr3R	25731287	25731352	25731287..25731352	CG15515-RA,	FBgn0039719,	CG15515,	1	.
CG33227-RB	CCCCGATTTGTGGTTTGCCCCGAAAATATATCCTTAGCCAGGGATTTGCCTATCCTGACCACAGCGGAG	69	-	chr2R	17876276	17876345	17876276..17876345	CG34370-RG,	FBgn0085399,	CG34370,	1	.
CG11821-RA	TGGCACGATTGTGTCCATGATTCCCATAAATTCCCTGTACAGCGAGGAGTACTTCCCAAAGCCCACGGA	69	+	chr3R	14959899	14959968	14959899..14959968	CG11821-RA,	FBgn0038680,	Cyp12a5,	1	.
CG9373-RA	AACGGAGGAGTTGGTGTTGATGGCAACGATTACAACACTGGCAATCCATTGGATGTCTATGGCGG	65	-	chr3R	5332200	5332265	5332200..5332265	CG9373-RA,CG9373-RB,	FBgn0260010,	rump,	1	.
CG11375-RA	TGGTCGACGATATACTTCAAATACGGCGCAGTTGCAACTAGCCCATCGTTCACCGCTAAGCCCAAAGCT	69	-	chr3R	20625727	20625796	20625727..20625796	CG11375-RA,	FBgn0039227,	polybromo,	1	.
CG15427-RD	TACACCAGCAGCAATAATCTGTATGGCAATGCGGATAGAAGTAGACCACTGCACATAAATACGAT	65	+	chr2L	4319888	4319953	4319888..4319953	CG15427-RD,CG15427-RF,CG15427-RG,	FBgn0010473,	tutl,	1	.
CG8660-RC	GCTGGAGCCACAAATGCGTGACCTTATCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCGA	69	-	chr3L	19810417	19810486	19810417..19810486	CG8660-RD,CG8660-RB,CG8660-RC,	FBgn0036911,	Fibp,	1	.
CG3953-RA	GCACTGGGATTCTCCGTGAGCTTGTACGCATTCTTTAGGGACGATGATGGAAAACCCCGAACGCC	65	+	chr3R	5982579	5982644	5982579..5982644	CG3953-RA,	FBgn0086359,	Invadolysin,	1	.
CG15831-RA	CCTCCGCGATGTGTGTTCAAGTTACTGACAGAACAGTGTCATATGCCACAAGGCTCTGATTTGGCTTTT	69	.	.	.	.	.	CG15831-RB,	FBgn0040034,	CG15831,	1	.
CG9856-RA	TGGACACCTGCTTGCATGTACTCAACCTTGGAAAGTGTGAGTCGGAGTTTGACATCTACGATGACACCA	69	-	chr2R	17508051	17508120	17508051..17508120	CG9856-RA,	FBgn0016641,	PTP-ER,	1	.
CG9796-RA	TCCAAGTCAGCTCAAACCTTTGGCAATCGGGAATCTCAACACCTAATGCTGTATTTTGCTCTTGACCTT	69	-	chr3R	9224381	9224450	9224381..9224450	CG9796-RA,	FBgn0038149,	CG9796,	1	.
CG3085-RA	CCTCGCAGACGGACAGGAACATAACGCTCACTCGCATGGAGAACGAGATTCCCAAAGACTAGACTTGGG	69	+	chr2R	18964135	18964204	18964135..18964204	CG3085-RA,	FBgn0034816,	CG3085,	1	.
CG41063-RA	TCTGCCGGATTTTGATCCAATCAAGGGATCTATCACATCGGAGCAATTCATCGCAAAGGTAGAGCAACT	69	.	.	.	.	.				0	no match
CG4423-RA	ACGAGAACTTGGCAAGAATTCAAAGCGCCAAAAAATTTCTAGCCGAAAACTTAATAGAAAAGTTATAA	68	+	chr3R	8203473	8203541	8203473..8203541	CG4423-RA,	FBgn0010042,	GstD6,	1	.
CG40293-RA	ATGCGGCTATGCGACTATAATTTCCGCTTTTGGTCTAGGTGAGCTTCCTATCCGGTTCTTTCCTAATCA	69	+	chr2R	452316	452385	452316..452385	CG40293-RA,	FBgn0046692,	Stlk,	1	.
CG8625-RA	GCCGTGTTTTGGGAGCGATGCACTGAGTTGCAGGATATTGAGCGAATAATGGGACAGATTGAGCGTGGA	69	+	chr2R	8527155	8527224	8527155..8527224	CG8625-RA,CG8625-RB,CG8625-RC,	FBgn0011604,	Iswi,	1	.
CG12191-RA	CTGCAGGAGAAGTACTACGAGATCGATTCCACGCTACAGCTCTCCTGTGTGGTGCGAAACGTGGC	65	-	chr3L	853744	853809	853744..853809	CG12191-RA,	FBgn0035170,	dpr20,	1	.
CG2213-RA	GTACGCGCAACATGTGAGAAACCTAAAGGACGTGTGCGTATCCAAGACGGTGATGAAACCGGGGG	65	-	chr3L	1332998	1333063	1332998..1333063	CG2213-RA,	FBgn0035210,	msd5,	1	.
CG13190-RA	GAATGGGTCTGCTCTAAGCTGGGTAGACCTGCAGATACGCCCTATGTTCATGAGTCGACTGGATTGGCC	69	+	chr2R	7774424	7774493	7774424..7774493	CG13190-RA,	FBgn0260932,	cuff,	1	.
CG30259-RA	TTCGAAGCCAACCTCTCCAACGTGGTTCTTTCGAGGACTTTGGCTAGGGGAAAGATGAACCTGGC	65	-	chr2R	18588961	18589026	18588961..18589026	CG30259-RA,	FBgn0050259,	CG30259,	1	.
CG9006-RA	CGCGTGGTCGTGGATCTTCTGAAAGAGGTTGGAACTCCGTTGCAACAGCAGAGGTATCTCCAGGACTTG	69	-	chr2R	7505909	7505978	7505909..7505978	CG9006-RA,	FBgn0086712,	Egm,	1	.
CG9614-RC	TCCGGAATGTCGATATGACTACGGACTTCTGTTCAAGGACGATTCTGCCGATCACAAGCGTCAGAGCCT	69	-	chr3L	19301584	19301653	19301584..19301653	CG9614-RC,	FBgn0003089,	pip,	1	.
CG2885-RA	CCATCGTTATGTACTTCACAACCCGATCAGCCCGATGCCATCTGAGCAGGAAGAGGAGGACGCTG	65	+	chrX	10312034	10312099	10312034..10312099	CG2885-RA,	FBgn0030200,	RabX2,	1	.
CG9095-RA	TGCAGCCAAATTATGTGCAACTTGGTTTCGTTTGAGGTCTCAAGCCCAATCGACTTGCTCATAGTCGCA	69	-	chrX	15034410	15034479	15034410..15034479	CG9095-RA,CG9095-RB,	FBgn0030617,	CG9095,	1	.
CG31673-RA	AGGTCCCAATGGAAAATCGAGCAGATCAACTGGATGATGGGTCAAGAGATTCGCGATTCCGTCATCGGT	69	+	chr2L	20830278	20830347	20830278..20830347	CG31673-RA,	FBgn0051673,	CG31673,	1	.
CG6421-RA	TGGCAAACTGACGGTAAATGGAGAGCATCCCGATTCGGAAAAGGCTTTCATCAACTGCGCCAAGG	65	+	chr2R	12760085	12760150	12760085..12760150	CG6421-RA,	FBgn0025827,	CG6421,	1	.
CG9617-RA	GGTGGTCATCACCGTGCTCCTGAAGAACGCCGTCGATAAGAACTATGCTGTGGAGATTACCCAGAAGCG	69	-	chr3R	4130737	4130806	4130737..4130806	CG9617-RA,	FBgn0260939,	Sgt1,	1	.
CG9875-RA	TCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCACAGAACTGGAACTCGAATCAGATCCCCAGAA	69	+	chr2R	19245791	19245860	19245791..19245860	CG9875-RA,CG9875-RB,	FBgn0034850,	CG9875,	1	.
CG17033-RA	ACAACCTCCACATGACTGAGGACGTCATGATCGATCCAGGTTTGGTCATGATCTTCGCCCATGGCAT	67	+	chr3L	15950996	15951063	15950996..15951063	CG17033-RA,	FBgn0036546,	elgi,	1	.
CG14215-RA	GCAGCCCAAAGAAGGAGACAAGACGGAGAGCAAGGAAGCTTCCGAGGAGGAAACCCAACATAATCCAGA	69	+	chrX	19552338	19552407	19552338..19552407	CG14215-RA,	FBgn0031052,	CG14215,	1	.
CG15133-RA	AAAGGAGGACCAAGCGCTATCCATGTACGAGACAAACTTCCGTGGATGTACCCTATGCCCGCCTG	65	+	chr2L	16895597	16895662	16895597..16895662	CG42555-RF,CG42555-RG,CG42555-RH,CG42555-RI,	FBgn0261671,	tweek,	1	.
CG4938-RA	GGTTTTAAGCTGATCTCCGTGCCGGACATACTGCCTAAGGAGGTGATCGAATCTTGTGGCATGCGCAC	68	+	chr3R	11167061	11167129	11167061..11167129	CG4938-RA,	FBgn0021750,	Aats-ser,	1	.
CG11788-RA	GAAGTGGAACGGGAGGAGACCATCAATGCACTGAAGGGCATAGCTCCAGAGGATGTTGTGGCTGG	65	+	chr2R	16163028	16163093	16163028..16163093	CG11788-RA,	FBgn0034495,	CG11788,	1	.
CG8673-RA	GGGCGAAGCGATACGGCTAAGATCCTTTAGGGAGCCTATTAAAGATTTCGACGATGGATTCGCCGTTCA	69	+	chr2L	8124546	8124615	8124546..8124615	CG8673-RA,	FBgn0031986,	CG8673,	1	.
CG11588-RA	GCTTCTGCGCGAATGGTCAGAGTTACCTCCAATGCCATTTTGGTTACATCCGACCTCCACATGGAGCAC	69	+	chr3L	11915158	11915227	11915158..11915227	CG11588-RA,	FBgn0036221,	CG11588,	1	.
CG11924-RA	GTAGCGGAAATGACAAAGGACCAATACGAAATTTAGTCATTTCTCAATTATTTGCACACGAGCAGGATC	69	-	chr2L	4878075	4878144	4878075..4878144	CG11924-RC,CG11924-RB,CG11924-RA,CG11924-RE,	FBgn0000286,	Cf2,	1	.
CG3875-RA	ACAAACGCTACGCCATTTAAACGTGCATATCCGTATCCGACTGACATGAATCGTACGCGCGAACCGCC	68	+	chr2R	18539519	18539587	18539519..18539587	CG3875-RA,	FBgn0034740,	nsr,	1	.
CG33098-RB	TCTCGCTCTTCGATACGGACTGCGATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGGCG	68	+	chr3R	8213704	8213772	8213704..8213772	CG33098-RD,CG33098-RB,CG33098-RC,	FBgn0053098,	CG33098,	1	.
CG31345-RA	TCGGCCTGGACCTGACTGATTCCGAAATCGATGAAATGTTCTCCAGATTCGACACAGATGGAAGTGGCA	69	-	chr3R	8637476	8637717	8637476..8637499,8637671..8637717	CG31345-RA,	FBgn0051345,	CG31345,	1	.
CG14207-RB	ACCGAAATCACACACTTGAACGTCTTGAGTTTCGAATACATATAGAAAACCCATCGAGTTCCCTTTTTT	69	+	chrX	19499280	19499349	19499280..19499349	CG14207-RA,CG14207-RB,	FBgn0031037,	CG14207,	1	.
CG15471-RA	GCCCGCAGACAGACATTCGTTGACACAGATGATCGGCATCAAAGGAGGTGCGAATATCCAGCCGAGTAT	69	-	chrX	4676853	4676922	4676853..4676922				0	no match
CG33339-RA	CTTCAGTACAGCTTGGAGTTTGATATGTACGTTCCGGTTCCCGACACCATTGAGGGTTGGCAGCCCAAG	69	+	chr3R	20187766	20187835	20187766..20187835	CG33339-RB,	FBgn0053339,	CG33339,	1	.
CG9038-RB	ATGGCATTGGCAATTGATTGTGCTGATTACATGCGACCTGGAAACTTGCCCATTTCGAATTCGGATGGG	69	-	chrX	15746392	15746461	15746392..15746461	CG9038-RA,CG9038-RB,CG9038-RC,	FBgn0026076,	UBL3,	1	.
CG9564-RA	GGCGGTCAATTGGTGGGGATCAAGCGAGTTCATCGACATCCCAAATTCGATGCCTACACCATTGACTTT	69	+	chr2L	8998916	8998985	8998916..8998985	CG9564-RC,	FBgn0015316,	Try29F,	1	.
CG3212-RA	AGGACTTTGTTCGGGGAAGGTACATCAATGAAGGGTGTCGATGCCAAGAATCATGTCTGGTGAACGGCA	69	-	chr2L	3522721	3522790	3522721..3522790	CG3212-RA,	FBgn0031547,	Sr-CIV,	1	.
CG31089-RA	CCAGCGGATTAGTGCGTTCTGTGGGTCCATATTTGGGTCATAGGAACACATATTCGGTGCTTTTTGGAT	69	+	chr3R	21729155	21729224	21729155..21729224	CG31089-RA,	FBgn0051089,	CG31089,	1	.
CG3225-RA	GAGGGAGCAACTCATCACAGTGGCCAGAAAGAAGTACGGCATTCCAATCTTCTCGTGCAAGGGCGATG	68	-	chr2L	4816213	4816281	4816213..4816281	CG3225-RA,	FBgn0031631,	CG3225,	1	.
CG9233-RA	ACTCACGCTATTACCACTGTGATGTCTGCGATCGAACTTTCCAACGGGAGAGGGACCTGCAACGC	65	+	chr2L	8465895	8465960	8465895..8465960	CG9233-RA,	FBgn0029173,	fu2,	1	.
CG33287-RA	CTTCTCCATCAAGCATATTGCCTTAGAGCTGCACACCTACAATACCATGGCTCTGCAATGCAAGCTGAT	69	-	chr3L	20960366	20960435	20960366..20960435	CG33287-RB,	FBgn0053287,	CG33287,	1	.
CG6034-RA	CAAGGCTCTTACGGAATTGACGAACGCATTTGAGGTGCCTGGCGAACATGAGGGTTCCGTAGGTG	65	-	chr3L	17739506	17739571	17739506..17739571	CG6034-RA,	FBgn0036750,	CG6034,	1	.
CG6129-RB	CCCGCCAAGAAGACGTAACGCTCACTGCCATTTGCATTTATTTAGAAAAAGGCTTCCTGGAGTCCTCCA	69	+	chr3R	19953459	19953528	19953459..19953528	CG6129-RD,	FBgn0039152,	CG6129,	1	.
CG5988-RA	GCGCTATATGCTCTGCGAGATCGAGTTGACCATAAACGCCTCCTATCCGAACAGCAATGGTGCGAAGCT	69	-	chrX	18135696	18135765	18135696..18135765	CG5988-RB,	FBgn0030904,	upd2,	1	.
CG3003-RB	CCAGCAGCTGGATAGGCGGTATCAAAGCATCCGACGCACCATTACCAATGAGAGTAGAGCTGCGC	65	+	chrX	9505437	9505502	9505437..9505502	CG42797-RD,CG42797-RE,	FBgn0261931,	CG42797,	1	.
CG11982-RA	GGCCGAGAGGGACTAGACACCATTGTCACCCAAATGCTCAACCAAATGGAAACTTCAGGACCGCC	65	+	chr3R	4833050	4833115	4833050..4833115	CG11982-RA,	FBgn0037653,	CG11982,	1	.
CG13025-RA	CGAGGATAATACCTTAGTGGTTGGCTATCTCCAGGATAGTAAGCAGCTGATGATGCATGATGTGCGGCG	69	-	chr3L	16770832	16770901	16770832..16770901	CG13025-RA,	FBgn0036660,	CG13025,	1	.
CG14743-RA	TCCTCTTCAGCGAGTTCCTCCAAGCCATCAATCCGATCGACTCAGAGGGATGGTACCTCAGTGGTA	66	-	chr2R	4599118	4599184	4599118..4599184	CG14743-RB,	FBgn0033326,	CG14743,	1	.
CG6139-RB	CGCGGCAATTCCAACAAATGTGCGTCAAAATCCGTGTTTAAATCGCAAGCACCACGCAAGCAAGCATCT	69	-	chr2R	9420201	9420270	9420201..9420270	CG33528-RE,CG33528-RC,	FBgn0260964,	Vmat,	1	.
CG17506-RA	CGCCGATTTTCCGTTACGAAAGAGTTTGAAAAGGCTGACATACTCGTTCATTAGACGATTAAATCTTTT	69	+	chr3LHet	2272570	2273331	2272570..2272602,2273294..2273331				0	no match
CG31308-RA	ATCAGCAGCTTAGGCGATATGTTCAGCACATTCTATAGCATATATATGACTATATCCTCGGCTCACCTA	69	-	chr3R	23592942	23593011	23592942..23593011				0	no match
CG4059-RA	CCGACGAGACGCAACTGAACAATGGTCAGGTGTTCAATCTGATGAGTCTGGGTTTGTTGGGAGTGCCAC	69	-	chr3L	18746386	18746455	18746386..18746455	CG4059-RB,CG4059-RA,CG4059-RC,	FBgn0001078,	ftz-f1,	1	.
CG7406-RA	TGTGCGCTTAGAAACCATTAATTTTTTTTGCTAATTTTTAAAGAAATACACAGAAAATGAAAAAGATAA	69	+	chrX	18972558	18972627	18972558..18972627	CG7406-RA,	FBgn0030980,	CG7406,	1	.
CG14162-RA	GTCTGGCAGAAAAGCATGAAAAAAGCATAAGAAAAGCATAGTAAAGCAGAAGAAAAGCAGACAAAAGCA	69	+	chr3L	9968539	9968608	9968539..9968608	CG14162-RA,	FBgn0040823,	dpr6,	1	.
CG14147-RA	GCACGCCCTGCACGGAAAGTACGGAAAGGTCAGGATCACCGAGACCCATTATTGAGAGATTCCAAAAAC	69	+	chr3L	10966312	10966381	10966312..10966381	CG14147-RA,	FBgn0036112,	CG14147,	1	.
CG33245-RA	GAGCGTGGCCTGATTGCTATGCACCGAAAATATTTGCGAGGAGATTTTGGATCGTGTCCCAATATCTCC	69	.	.	.	.	.	CG33238-RB,CG33236-RB,CG33244-RB,CG33245-RB,	FBgn0053238,FBgn0053236,FBgn0053244,FBgn0053245,	Ste:CG33238,Ste:CG33236,Ste:CG33244,Ste:CG33245,	4	.
CG14815-RA	GGGCTTCATCCGTGTGCGTTACAACGTGGGCGTATGTTGCATGAACCTTAAGGCCTACAAGGAAGC	66	-	chrX	1761263	1761329	1761263..1761329	CG14815-RA,CG14815-RB,	FBgn0023516,	CG14815,	1	.
CG31020-RA	GCTGGAAAGGCGCTTGGAGATCTACAAAAGCCAACAGATCTACCAAAGCCAACAAGTTGGAGCGGTAGT	69	+	chr3R	26303517	26303586	26303517..26303586	CG31020-RA,	FBgn0260440,	spdo,	1	.
CG14221-RA	CGCTGATTTGGGGAGAACATTCCAGCTCACTTCCGTTGATTCCGTTGCAGAATAAAAAGGGCGGCG	66	-	chrX	19513140	19513206	19513140..19513206				0	no match
CG10405-RA	CCGTCCTGTCGTCGGTACTCAAAAGCACTACGGTACTGACAGTCAACCAAGAGAAGTGCCACAACGATC	69	+	chr3R	12280805	12280874	12280805..12280874	CG10405-RB,	FBgn0038431,	CG10405,	1	.
CG15098-RA	TATCTCTACTACGGCATCTACTCGCTCTTCAAGCAGATCCAGGCATCCCGTGAGATCCAGCGCCC	65	-	chr2R	14721213	14721278	14721213..14721278	CG15098-RA,	FBgn0034398,	CG15098,	1	.
CG15025-RA	TCAATGCCAAACCTGGTGAAGCCGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGCC	65	-	chr3R	15315926	15315991	15315926..15315991	CG15025-RA,	FBgn0038709,	CG15025,	1	.
CG2637-RA	GCCCGCTTTCAAGGACTTCCTCGTCATGGGTCTGAAGAACTTCCAGGAGTACCAGGTCTGCTGCG	65	+	chr2L	20738143	20738208	20738143..20738208	CG2637-RD,CG2637-RA,CG2637-RB,CG2637-RC,CG2637-RE,	FBgn0262743,	Fs(2)Ket,Fs(2)Ket,Fs(2)Ket,Fs(2)Ket,Fs(2)Ket,	1	.
CG41040-RA	TGGTGCGCGTATGAAAAAAATAAAAAAACAATGAAAAAAATGCACATACATACAAAGGAATGCAACAGA	69	.	.	.	.	.				0	no match
CG15403-RA	GTGGTCATTTCCGTCATTTCTCTTGGAGGCTTTTATGCACTTGTTTCCAGTGGAATAAACCTGGTGCCC	69	+	chr2L	3129109	3129178	3129109..3129178	CG15403-RA,	FBgn0031504,	CG15403,	1	.
CG2023-RA	TGGAGACATGGACAAGGATGCGTTTACATTACAGGCCATACGGCAGGACCTTATCGATAACAATCTGCA	69	-	chr3R	1650101	1650170	1650101..1650170	CG2023-RA,	FBgn0037383,	CG2023,	1	.
CG15533-RA	CAAGATTCCCCAACTCCAGTGGTTCCACGATACCCTGTTGGAGGCCGAGAAGAACGGGGAGTATG	65	+	chr3R	26256020	26256085	26256020..26256085	CG15533-RA,	FBgn0039768,	CG15533,	1	.
CG1147-RA	GCAACTGCCACCTCTCTAGAACACTGAGCGAAATGCCGTGTCCTCTAATCGGGAAACACTCTGGCTGTA	69	+	chr3R	2020024	2020093	2020024..2020093	CG1147-RA,	FBgn0037408,	NPFR1,	1	.
CG17334-RA	CGTTTTCCTAATTTCCCCTTCGCTGAACCCAAAAATTCGAGAAAGTGCTGTAGCTGTGTTAGTGCGGGC	69	+	chr3L	5647832	5647901	5647832..5647901	CG17334-RA,	FBgn0035626,	lin-28,	1	.
CG12085-RB	GACCAGGGCATCTTCGATCAGGGAGATCTGTCCGGTTAGAAGGGGGAGCTATCCGAATTGCATGC	65	-	chr3L	1497186	1497251	1497186..1497251	CG12085-RC,CG12085-RD,CG12085-RA,CG12085-RB,CG12085-RE,CG12085-RF,CG12085-RG,CG12085-RH,CG12085-RI,CG12085-RJ,	FBgn0028577,	pUf68,	1	.
CG9132-RB	CACATAATTGTAGAGAAGGAAATCTTGCTAAATCTGAATTGTTGTTTCAGCCCCGATTACCCCGCTCCC	69	-	chrX	16691630	16691699	16691630..16691699	CG9132-RA,CG9132-RB,CG9132-RC,	FBgn0030791,	CG9132,	1	.
CG15902-RA	ACCACTTCTTTGGCCATCTGGAGAAGAGCTTCCATGAGATCCGGCAAGACTTTGCATTGATGCTGCTCA	69	-	chr3R	7000144	7000213	7000144..7000213	CG15902-RA,	FBgn0040250,	Ugt86Dj,	1	.
CG15361-RA	GCTCTGGCTGTTCCCGCTCCAGTTGCCCGTGCCAATCCCGCCCCAATCCCGATTGCCAGCCCCGA	65	+	chr2L	2008705	2008770	2008705..2008770	CG15361-RA,	FBgn0040717,	Nplp4,	1	.
CG31515-RA	AAAGGTTAAAATACGAGAGTCCGATATACGACGTATAACAAAGATGGGAAGCTACAAGGTACGCCAAGG	69	-	chr3R	19214459	19214528	19214459..19214528				0	no match
CG8996-RA	AGGCCGTGCCCGAACTAACCGGAAAGTTGTAAGGCGAGATTGTCACTTGCTGTAGTATAAAGATTGTGT	69	-	chr2R	7576546	7576615	7576546..7576615	CG8996-RA,CG8996-RB,	FBgn0010516,	wal,	1	.
CG12360-RA	GGCAGACCATGAAACTGGTGTGGCGTCTTACCTTCACGGACAGCATCAGCATTGAGGAGGTAGAGG	66	-	chr3R	8853402	8853468	8853402..8853468	CG12360-RA,CG12360-RB,	FBgn0038111,	CG12360,	1	.
CG9911-RA	GCACATGTATCTGTTCCCCCACTTCAGTGACATGTACTCGCCGGGTAAGCTGAAGCAGTTCCTTCAGGA	69	-	chrX	16188171	16188240	16188171..16188240	CG9911-RD,CG9911-RB,CG9911-RA,CG9911-RC,	FBgn0030734,	CG9911,	1	.
CG11709-RA	GGGCTTTTTGCTTGTCGCTTCGCAAATGTGATGCAAAACAAAAAGAACCGAACAAAGAACGCGGAGATT	69	+	chrX	11455772	11455841	11455772..11455841	CG11709-RA,	FBgn0030310,	PGRP-SA,	1	.
CR31273-RD	GGCAATGAACCCTTGACTTTTGGCCGCAATTCATCAAACAATTGGCCGACCATTTGCATGCGGTGG	66	-	chr3R	12568099	12568165	12568099..12568165	CR31273-RD,	FBgn0020556,	bxd,	1	.
CG8141-RA	ACCGTCGCAGGAATTTGCATCTGGATCCCTATGTGTGCAATGAGTGCAACCAGTATGTGCGTGGTG	66	+	chr3R	9017688	9017754	9017688..9017754	CG8141-RA,	FBgn0038125,	CG8141,	1	.
CG31193-RA	GCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAGGCAGAGTCGGAACCCGGTAT	69	-	chr3R	16730856	16730925	16730856..16730925	CG31193-RA,	FBgn0044810,	TotX,	1	.
CG33045-RG	GACTTGAGATCAGCGATATTAACTTAGACTCTAGTTTCAGGTCTTGCCCTGCTATTGATTGGGATGGCG	69	+	chr3L	217456	217525	217456..217525	CG1220-RC,	FBgn0063923,	Kaz1-ORFB,	1	.
CG17721-RA	CGCCACTGTCCGGTCTGCAGAATGGGAATTAAGGAGTAGGTATCACCTAGTGATCATGCAGCCAGGCAA	69	+	chr3R	7061599	7061668	7061599..7061668	CG17721-RA,CG17721-RB,CG17721-RC,	FBgn0037885,	CG17721,	1	.
CG9614-RJ	TGATCTTCAATCGACCAACCCGAGTAGACAGCGAGCAAATGGTCCCACTTTTCAGGCAATTGGCCG	66	-	chr3L	19294506	19294572	19294506..19294572	CG9614-RJ,CG9614-RM,	FBgn0003089,	pip,	1	.
CG17117-RA	AGGAAGAAGTACGAAGGAGCTGAATACACATGGATCCGATCCCAAAACTAAAGCATACCGCGTGGCAAT	69	-	chr3R	6336895	6336964	6336895..6336964	CG17117-RA,CG17117-RB,CG17117-RC,CG17117-RD,CG17117-RG,CG17117-RH,	FBgn0001235,	hth,	1	.
CG11112-RB	CACGCGAAACCCAATACATATTCAAATAAGAAGGCAAACACTAAAGAGGACGAAAAGAGGCAATTCCTG	69	+	chr2R	3288538	3288607	3288538..3288607	CG11112-RC,	FBgn0033164,	CG11112,	1	.
CG31161-RA	ATGAGGCGGAGTGTCTGACATGCAACCTGGAGGAAAATCTACGGAAACAGTGCCGATGCATGGAGCAAA	69	+	chr3R	18443376	18443445	18443376..18443445	CG31161-RB,	FBgn0051161,	CG31161,	1	.
CG7997-RA	ACAGGATCCCCTTCACGGTCAAGGAGCTCGGATTGACGAATCCCAAGGGTTATAATGTGCAGGATCTGT	69	-	chr2R	12229054	12229123	12229054..12229123	CG7997-RB,CG7997-RA,	FBgn0034117,	CG7997,	1	.
CG33149-RA	CCACTTAAACAGAGAGTAAGGACTAAATAAGAAATATGTTTTGTATGAAAATTGTGTAAAATTCCTTGA	69	+	chr2R	19963116	19963185	19963116..19963185	CG42309-RE,	FBgn0259209,	Mlp60A,	1	.
CG10209-RA	AGCACGGTGACTACTCACTTGTCCCACAGCATGTACCAGTTGCAAAAGAAATACGAAAAGGGCGAGCGT	69	-	chr2R	10734384	10734453	10734384..10734453	CG10209-RA,	FBgn0033971,	CG10209,	1	.
CG16865-RA	CAGTCCCGACTCCCACGTAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTC	65	+	chr2L	13812086	13812151	13812086..13812151	CG16865-RA,	FBgn0028919,	CG16865,	1	.
CG7697-RA	ACCCAGCGCTGAAACTACTCTGGCTGAAACAAATGAAAAATCACCATTTCGCTCATGCATACTATAGTA	69	+	chr3R	14486737	14486806	14486737..14486806	CG7697-RA,	FBgn0027841,	CstF-64,	1	.
CG7122-RA	CGCTTACGTCTCATCCAAACCGCTCACCTACTGTGCCGTTGTGTCGAACGCTTTGCTAACCACTCGAAA	69	+	chrX	17991014	17991083	17991014..17991083	CG7122-RB,CG7122-RC,CG7122-RD,	FBgn0030893,	RhoGAP16F,	1	.
CG17646-RA	ACCCCGTTTCCATCTTGCCCTGTAAACACAATACTTCATCCACTGAGCTGGATCTCCGCGAAGACTCCA	69	+	chr2L	1750348	1750417	1750348..1750417	CG17646-RB,CG17646-RA,	FBgn0031362,	CG17646,	1	.
CG7107-RA	TGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAAGAAGGAGCAATACACCGGCCGT	69	-	chrX	13488324	13488393	13488324..13488393	CG7107-RA,CG7107-RD,CG7107-RB,CG7107-RE,CG7107-RG,CG7107-RK,CG7107-RL,CG7107-RN,	FBgn0004169,	up,	1	.
CG6190-RA	AGGCCATCAACTACTCGAAGGGCTTCGGCATGCTGTAGACTATGGTCCAAACTGCAAGTGCAAGTCTGT	69	-	chr3L	11199865	11199934	11199865..11199934	CG6190-RA,	FBgn0061469,	Ube3a,	1	.
CG10293-RB	CGTGGCAAGCCTAACTGGGAGCATCTGTCCGATGACCTGCATGTCCTGATAACCGTCGAGGACAC	65	+	chr3R	17896540	17896605	17896540..17896605	CG10293-RB,CG10293-RA,CG10293-RC,CG10293-RD,CG10293-RE,	FBgn0017397,	how,	1	.
CG1697-RA	TCCCGACTACTTCCCAAAACAGGAGTACAACTAGCCCCATCACTAGCTCTAGCCCTAGCCCTAACCCTT	69	+	chrX	11499445	11499514	11499445..11499514	CG1697-RA,	FBgn0030318,	rho-4,	1	.
CG16815-RA	AGCGCCGTCAGACACAGGGATTCTTCCGACCTTGGTTGGATAATGAGCAGAACCAACAGGCGGAG	65	+	chr2L	13230017	13230082	13230017..13230082	CG16815-RB,	FBgn0032491,	CG16815,	1	.
CG31225-RA	GGCTCCCCGATGATGGTGGGAAATTGGTGTATGATGTTACCGACGGAGAGGGTAATAGGCAGCCATGAG	69	+	chr3R	19308417	19308486	19308417..19308486	CG31225-RB,	FBgn0051225,	Ir94f,	1	.
CG9422-RA	CCATGCGAAGATTTTCTTATTTGCCCTTTGTAAGGATGTACAAATAAAGCCCAATTTATCACAAAA	66	+	chr2R	2580033	2580099	2580033..2580099	CG9422-RA,CG9422-RC,CG9422-RD,	FBgn0033092,	CG9422,	1	.
CG32553-RA	CTCTGCCACTTAGCTGTTAAACTGTGTTTATTGTCTCGCCTGCAAGTTGTCGGTAGAAATTGAAGAGCA	69	-	chrX	18018928	18018997	18018928..18018997	CG32553-RA,	FBgn0052553,	CG32553,	1	.
CG9571-RA	GCAATCAAAGCCCCTTCATATCCAGGAGCCATATCATCATACCCGCTACCATCTTCACCAAGAGTGA	67	-	chrX	19985635	19985702	19985635..19985702	CG9571-RA,	FBgn0031086,	fd19B,	1	.
CG10382-RA	AGCCTGCTACCGATCATGGAGTTCAAGCTCAAGTTCCGACAGATCCCCTCGAACAATGTCACCCG	65	+	chr2R	18269296	18269361	18269296..18269361	CG10382-RA,	FBgn0025878,	wrapper,	1	.
CG7832-RA	CAGCAGCAATCGACTTTGGACCCCAGCTTACTTTCTTTGGACATTGCGAATATCAAGGCCGAGGAGATT	69	-	chr3R	10471617	10471686	10471617..10471686	CG7832-RA,CG7832-RB,CG7832-RC,	FBgn0086686,	l(3)L1231,l(3)L1231,l(3)L1231,	1	.
CG10493-RA	CACCAACAAGTTCATCTCGACCAGCACTCCTCAATTACCCCAACCCATAACGACTTCTGTGCCCCTGG	68	+	chr2L	19062652	19062720	19062652..19062720	CG10493-RA,	FBgn0032749,	Phlpp,	1	.
CG5938-RA	AATTTTGCAAGAACTCTAGGCGGTAAGTTTGATTTCTCGTAACTTTAGGGCGCTCTACTTTTTCTGTTT	69	+	chr3R	23102717	23102786	23102717..23102786	CG5938-RB,CG5938-RD,CG5938-RA,CG5938-RC,	FBgn0046247,	CG5938,	1	.
CG8529-RA	CCAACGCGAGCTAATTGCCCAACTGGAGTCCAAGAATAAGGAGATAATGCGGGAGATAGCGCGCCTG	67	+	chr2R	8336757	8336824	8336757..8336824	CG8529-RC,CG8529-RA,CG8529-RD,CG8529-RF,CG8529-RI,CG8529-RG,CG8529-RH,	FBgn0033739,	Dyb,	1	.
CG14722-RA	TGACTCCAAGCTGGTGGTTGGTACCTCCAAGGGTCGCTTGTACACCTACAACTGGGGCCAATTTG	65	+	chr3R	7568960	7569025	7568960..7569025	CG14722-RA,	FBgn0037943,	CG14722,	1	.
CG1770-RB	AGAGGCGTGAATCGGGAAAAATTCTGAAATAACCGTTCAATCGCTAACCGTTAACTGTAAAACCGCTGT	69	-	chrX	13157584	13157653	13157584..13157653	CG1770-RD,	FBgn0041210,	HDAC4,	1	.
CG7962-RA	TCGCCACCGTCCTCTTTGGCATTCTGTTCTCGTATGTGCTGTGCAACTACCAGTACTTTATCTGTCCCA	69	+	chr3L	8123285	8123354	8123285..8123354	CG7962-RA,	FBgn0010350,	CdsA,	1	.
CG8256-RA	CATCGGAGGCATGGACTAGACTTAAGATCGAACGTTTAAGATCAAACTTATTTTCATTTTGCTGTTAAT	69	-	chr2R	11745274	11745343	11745274..11745343	CG8256-RC,CG8256-RB,CG8256-RA,CG8256-RD,	FBgn0022160,	Gpo-1,	1	.
CG10298-RA	CCCAAGTTATACAAGCAACTATCTGGCAAGAAGTAGTATCTTTCTCCTCATAATTAGGCTCCCAAATCC	69	+	chr3R	2169372	2169441	2169372..2169441	CG10298-RA,	FBgn0037432,	CG10298,	1	.
CG11128-RA	GCCTCAGCGTCTTTGCGAATTTGTACCTGATGTTTCAGCTGGACCTGAACACATGGATCCGCTTCCTCA	69	+	chr3L	22886082	22886151	22886082..22886151	CG11128-RA,CG11128-RC,CG11128-RB,	FBgn0037203,	slif,	1	.
CG31766-RB	CGGACGAACGAGTATGTGGGATGGAACTACGATGGTGACTACTGCAAGAGGAGCATCGAAACTGCTGGC	69	+	chr2L	13955400	13955469	13955400..13955469	CG17988-RB,	FBgn0032536,	Ance-3,	1	.
CG4989-RA	TCCTCTGTACGATCCCAGCCAGATATCTGCCTTTCAGTGTGATATCACAACGCAACAGGTGCATGACCA	69	+	chr2R	13621436	13621505	13621436..13621505	CG34195-RA,	FBgn0085224,	CG34195,	1	.
CG4596-RA	GGAACGCTCACCTGGTACAATATGTTCAACTATTACTGCGAGGAGAGGACGTACCTGCACAAGATCCTG	69	+	chr3R	6700031	6700100	6700031..6700100	CG4596-RA,	FBgn0037849,	CG4596,	1	.
CG12201-RA	GCGGTCTTCTACTGGTCTCTGATAGCTGGACTCTTGTCTGGCATGACTTCTGCCTTTATGGTCACCCCT	69	+	chr3R	7798296	7798365	7798296..7798365	CG12201-RB,CG12201-RC,	FBgn0037970,	CG12201,	1	.
CG2835-RB	GGACCGAGTGAGCACAATCAAGAATCCAAACTACACCCCTAATGAGCAGGATATTCTTCGGTGCCGTGT	69	+	chr2R	19833224	19833293	19833224..19833293	CG2835-RC,CG2835-RB,CG2835-RA,CG2835-RD,	FBgn0001123,	G-salpha60A,	1	.
CG17063-RA	TCCTCAACTTCTGGCTAATGGACGTGGTGTTCAATGGGTTCTGGTACAAGTACATCCACGCCCTG	65	-	chrX	20139705	20139770	20139705..20139770	CG17063-RA,	FBgn0027107,	inx6,	1	.
CG10561-RA	GCAGGATTCGATGTATGAACTGCTACGCAACACGGAAGGCTTGGGGAAGCAGATAAAGCAGCCGG	65	+	chr2L	19115196	19115261	19115196..19115261	CG10561-RA,	FBgn0002036,	CG10561,	1	.
CG18672-RA	TGAAGGGTCGTTACTATGCCGATGGACTTCACTTCCATTGGGGGTCCTACAAATCCCGCGGATCC	65	+	chr3R	27086763	27086828	27086763..27086828	CG18672-RB,	FBgn0040628,	CG18672,	1	.
CG13373-RA	GCACGTCCCATCGAAGCTGAGTGTCTAACCCTCCTTTAAGTGTCTAACTCAACTGGAACTCTCCGATTT	69	+	chrX	371554	371623	371554..371623	CG13373-RA,	FBgn0029522,	CG13373,	1	.
CG13359-RA	AGTGGCTGTAAGTCCGACGGCTCTTCAACACCCATTTGGAGAAGTGCTAGAACTGGTGCGGATCAGAAT	69	-	chrX	696160	696229	696160..696229	CG13359-RA,	FBgn0025616,	CG13359,	1	.
CG3301-RA	CGTCGGGAACATTTTTAATGATGAATAATCCGGTATAAATCTTTATCTACCCATTTTTAATAAGAATAT	69	-	chr3R	17100842	17100911	17100842..17100911	CG3301-RA,	FBgn0038878,	CG3301,	1	.
CG15122-RA	TGGTGCACTTCGAATCGATGGAGGGTGTCAACCAACTCTTTGGGGTCTCCAAGTTTCCCGTCATGAGTT	69	+	chr2R	15397657	15397726	15397657..15397726	CG15122-RA,	FBgn0034457,	Ir56c,	1	.
CG4408-RA	AAAGGATTGGGCCCATGGTCAGCTCAAGATACCGATTACCTTCTCCTACGAACTGCGTGGACCCG	65	-	chr3R	19187975	19188040	19187975..19188040	CG4408-RA,	FBgn0039073,	CG4408,	1	.
CG14077-RA	TGGTTTTTAGCACTCGATCGGAAGAGGAGCGTCTTGAGTTTAAGAACTATGAGCATATGTACCGGCGGA	69	-	chr3L	18906398	18906467	18906398..18906467	CG14077-RB,	FBgn0036830,	CG14077,	1	.
CG13316-RB	CCGGCAGCCACAAGAAAAGTGGACATAAGCAACTCACGGACACGCTCTTACTCACTGTCCAATGTTTCA	69	+	chrX	3592704	3592773	3592704..3592773	CG13316-RI,CG13316-RD,CG13316-RF,CG13316-RH,	FBgn0023215,	Mnt,	1	.
CG6770-RA	GAGGCCCACTTCGATGAGTACGAGCACTACAACTTCGACCATGACAAGCACATCTTCTCTGGACACAGC	69	-	chr2L	12045900	12045969	12045900..12045969	CG6770-RA,	FBgn0032400,	CG6770,	1	.
CG12352-RA	ATCGAGTTCTATAAGAAGTTTGGTTTCGAGATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAG	69	+	chr2R	7249047	7249116	7249047..7249116	CG12352-RA,	FBgn0024188,	san,	1	.
CG3127-RA	CCAGAAAATCCAGAAAAATCCAAAGATGGCCTTCAATAAGCTGAGCATCGAAAACCTGGACTTGGCGGG	69	-	chr2L	2748337	2748406	2748337..2748406	CG3127-RA,	FBgn0250906,	Pgk,	1	.
CG12970-RA	CCCGCTCACACGATCTTTGTGAAGGGATCTTGCAAGTACTCCGTGGACTTTGTTCCGGCCATTAGGC	67	+	chr2R	11744355	11744422	11744355..11744422	CG12970-RA,CG12970-RB,	FBgn0034047,	CG12970,	1	.
CG17212-RA	AGCTAGTGAGTGTATGCAAAAAGTACTGATCTTCAAACCGGAATGGAACGTCGAGTACTGGCGCCTACT	69	-	chr2L	12131349	12131418	12131349..12131418	CG17212-RB,	FBgn0032415,	rho-6,	1	.
CG10152-RA	TACCTGCACAAATACAACGACATCGTGCACAAACACGGGCTAATCACCTCGACATTGGGCCTGCA	65	+	chr3R	19404306	19404371	19404306..19404371	CG10152-RA,	FBgn0039089,	beat-IV,	1	.
CG12845-RA	TGGTGGTGCTACGTTGCACGCTGTTAGATTGAGGAAATTCGACATAGTTGCGACGATCTTCCAGAAAGT	69	+	chr2R	2912626	2912695	2912626..2912695	CG12845-RA,	FBgn0033127,	Tsp42Ef,	1	.
CG13322-RB	ATCCGGGTCTTGTGTCATAGTAGCCAGTCTCCAGTCTCTTCAGGGCCAAGCAACATTCAACTCGCCAAT	69	-	chr2R	8822207	8822276	8822207..8822276	CG13322-RA,CG13322-RC,CG13322-RB,	FBgn0033784,	CG13322,	1	.
CG8336-RB	ACGGGCAAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCGGTTGGCAGCAGCT	69	+	chr3L	9624372	9624441	9624372..9624441	CG8336-RB,CG8336-RA,CG8336-RC,	FBgn0036020,	CG8336,	1	.
CG2191-RA	GGGGAGAAGGAATTCAGCATCCTGGACCTCTCCTTTAACTGGTACACGGTCACAGGCTTCGTCATCACC	69	-	chr3R	27585399	27585468	27585399..27585468	CG2191-RA,	FBgn0039873,	Smvt,	1	.
CG3724-RA	CGGCCGAACTGGACTCCTTCCTCATTGAAATCACGCGTGATATTCTTAAGTACAAGGACGGCAAAGGTT	69	+	chrX	2041645	2041714	2041645..2041714	CG3724-RA,	FBgn0004654,	Pgd,	1	.
CG11769-RA	CCAGCGGAGAGGGAGGATCCGGAGGTGGGCAGTGCCAGTGTCAGCCAGGTAATATAATATATTCTTGA	68	+	chr3R	12339850	12339918	12339850..12339918				0	no match
CG11010-RA	TGCCGGGAACACTCAAGGAGGTCACTGGCAATATAATGACCCTGTCGTATAATGTTGGTCTGACGGTGG	69	+	chr3L	12849051	12849120	12849051..12849120	CG11010-RA,	FBgn0036319,	Ent3,	1	.
CG13788-RC	TGCCTTTGTCCCAAACCATCGATTGGAGCGTTGCCTTCAGAAGTTTCACACCATGGACGTGCAACTC	67	-	chr2L	7458280	7458347	7458280..7458347	CG13788-RC,	FBgn0045495,	Gr28b,	1	.
CG14910-RA	TCCCTGGATGGTTCCATAGGTGAGTACCGATGGTTCCTTCTCTGCCTACTCCTCGCAAAGGGTCC	65	+	chr3L	6455131	6455196	6455131..6455196				0	no match
CG6859-RA	GCACCTCGAAGAGCCAAAACGGTCTGGAGAACAATAACTTGCTGAACATCAACCGAGTGCTGTTGGCGT	69	+	chr3L	15138809	15138878	15138809..15138878	CG6859-RA,	FBgn0036484,	CG6859,	1	.
CG10242-RA	GCAAAACCCGAATGCAGAGTTTGTGACAATCGGAAAAAGGGCGATCATAGAACGTCGTTATGGAGGACT	69	+	chr2R	10763958	10764027	10763958..10764027	CG10242-RA,	FBgn0033978,	Cyp6a23,	1	.
CG2175-RC	TGGATCGAATGCCTATGGTGTTCCTCGTCCAGTCAATTCGTATCAAAGTCAAGGCTACAGGGCTGCCGT	69	-	chrX	7764270	7764339	7764270..7764339	CG2175-RC,CG2175-RA,CG2175-RB,	FBgn0000427,	dec-1,	1	.
CG15735-RA	TGAGGAAAACAGTTGAGCGAAGACAGGACTACTTGAAGTCTAAGAATGCTGATGTCAGTCCAGAGGCGC	69	+	chrX	11913870	11913939	11913870..11913939	CG15735-RA,	FBgn0030364,	CG15735,	1	.
CG17180-RA	ATGTTGGACAGCACCATGTAAAATAGGGCTACGCTATCCTGTGATCAACCAATCAAAGAGATCTTGTCT	69	+	chr3L	542041	542110	542041..542110	CG17180-RA,	FBgn0035140,	CG17180,	1	.
CG15605-RA	GGGAACGCAAGGCAGGAGTTGTAAAGAGGGACAAGGCAGATAAGTGGAACCATGTAGAGACGGCTCGAT	69	-	chr2R	13014385	13014454	13014385..13014454	CG15605-RA,	FBgn0034196,	CG15605,	1	.
CG8329-RA	GGAGCACTGGTCACTCACGACAATCCCATTCAAGTGGGCGTTATCACCTTTGCATCCATCGGCTG	65	+	chr3L	9631859	9631924	9631859..9631924	CG8329-RA,	FBgn0036022,	CG8329,	1	.
CG31736-RA	TCTTCTTCGGTCCCCCCATTTCCTCGAACTCCCGGTTTCACTCCTATTCCCCATCGCATATAGGCAAAA	69	+	chr2L	15968815	15968884	15968815..15968884				0	no match
CG12996-RA	ACGGAGAGCGAGCCCTATCACTTCTGTTCCGACGAGGATCATAGCAGTCACACGCAAACCATCAAGTTG	69	+	chrX	17144329	17144398	17144329..17144398	CG42864-RH,	FBgn0262111,	f,	1	.
CG8261-RB	ACCTTTTCAACCATAGGCCTATCCGAGACAGCCATCATGGACGTAATGTCATCATCCCTGCAGCAG	66	+	chr2R	4789816	4789882	4789816..4789882	CG8261-RB,	FBgn0004921,	Ggamma1,	1	.
CG3879-RA	GGCGTCGATCGAGGAGGCTTCTCAAGTGGCAGTCGAAGCTATTACCAATATCCGAACGGTCAATGGTCT	69	-	chr2R	8829109	8829178	8829109..8829178	CG3879-RA,CG3879-RB,	FBgn0004512,	Mdr49,	1	.
CG5021-RA	AATGCCGCCAATCTGTATGGCTACGTCAAGTGTAACTATGGTGCCAATAAGGATCTGAATTCCGCCGCC	69	+	chr3L	8960821	8960890	8960821..8960890	CG5021-RA,CG5021-RB,CG5021-RC,CG5021-RD,	FBgn0035944,	CG5021,	1	.
CG17191-RA	TTTCGTAATCCACGGGTGGAATGGTCGCTACACTGATGGCATGAACGTCAAGATCACCCGAGCCT	65	-	chr3R	22845037	22845102	22845037..22845102	CG17191-RA,	FBgn0039473,	CG17191,	1	.
CG2252-RA	TCGATTCGCACGTGAACCACATCAGAGTTGGGTGATGATCGGTCAGTATCACAGTATCAGACGGTTGGA	69	-	chrX	7942805	7942874	7942805..7942874	CG2252-RA,CG2252-RC,CG2252-RD,CG2252-RE,	FBgn0004656,	fs(1)h,fs(1)h,fs(1)h,fs(1)h,	1	.
CG3239-RA	CGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGCGGATACCACCCTTTTGGATGATGCCCT	65	-	chrX	5389350	5389415	5389350..5389415	CG3239-RB,CG3239-RA,	FBgn0029769,	CG3239,	1	.
CG7737-RA	ACGACTGGCCCAGTTTTACGGAATAAGCGTGTCCCGTTCTGGAACCAAATCGCAACTCTAGCTGTAGGC	69	+	chr2R	7113560	7113629	7113560..7113629	CG7737-RA,	FBgn0033584,	CG7737,	1	.
CG6203-RA	CGTGCCGAGTCGGGAGAGGAGCATTGAACACAATCATCGAGTGACGCGAATCATTTCAATTGAATCATA	69	-	chr3R	5927568	5927637	5927568..5927637	CG6203-RE,CG6203-RC,CG6203-RF,CG6203-RG,	FBgn0028734,	Fmr1,	1	.
CG6910-RA	CGCGGACAAGAATCCCTCCAAATTCCGGGACTACAGTATGGACACCACCGATCCTCTAAAGGAACGTGT	69	+	chr3L	12179275	12179344	12179275..12179344	CG6910-RB,	FBgn0036262,	CG6910,	1	.
CG6818-RA	CGCCTGCTTAAGGAGGTTTTTGGCGAAAGACTGCACGACAAAGCCATCCTGCACTATATGGACGATCCT	69	+	chr3L	19087574	19087643	19087574..19087643	CG6818-RA,	FBgn0036846,	MESR6,	1	.
CG32532-RA	TGCTGCAGTACCAGACATAATCAAAGACCTTTGACGACTTCTTTTAAAAGATCGCGCCCTAATGGCCCT	69	-	chrX	19427147	19427216	19427147..19427216	CG32532-RA,	FBgn0052532,	CG32532,	1	.
CG13421-RA	TCAGAACCGCCTTTCTGCGAGTAACAGTTTATCGTGAGGTGCTACTGTGCTAGGAAAACCCATGTCCAT	69	+	chr2R	16391066	16391135	16391066..16391135	CG13421-RA,	FBgn0034509,	Obp57c,	1	.
CG2239-RC	TGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAGTGGATAAAGAGGTATGCGATATGGGCCAGGA	69	-	chr3R	26345309	26345378	26345309..26345378	CG2239-RC,	FBgn0027654,	jdp,	1	.
CG2902-RA	CGATAGCCAGCTAAAGAGAATTTAACTGTAGCAAATTGATTGTTATCGCTGAATGGAATGGCCAGGACC	69	-	chr3R	1335368	1335437	1335368..1335437	CG2902-RA,	FBgn0010399,	Nmdar1,	1	.
CG31201-RA	GCGTCGACGATCTGGCCGATAACAAGGATGGTGTAGTTTACGGTGCAAAGAAAACTGGATCCACCAGGA	69	-	chr3R	16471325	16471394	16471325..16471394	CG31201-RB,	FBgn0051201,	GluRIIE,	1	.
CG1906-RA	GCGGGTGGCAGTGTTATGATAAAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGA	65	+	chr3R	25419585	25419650	25419585..25419650	CG1906-RA,CG1906-RB,CG1906-RE,CG1906-RD,CG1906-RC,	FBgn0086361,	alph,	1	.
CG17600-RA	TGTGGGGCTTTGTCTGATAAATTACCCCTTTTATATCCATTACTCTATCAATGTACTTACATATGCGTA	69	+	chrX	21943739	21943808	21943739..21943808	CG17600-RA,CG17600-RB,	FBgn0031195,	CG17600,	1	.
CG15553-RA	TCATGGCACCTGTACCTATCTGTTGTCCTCGGAATCTTTCGTTCCATTCAGGGTCCCATGTTTCGAACA	69	-	chr3R	26925136	26925205	26925136..26925205	CG15553-RC,	FBgn0039817,	CG15553,	1	.
CG13534-RA	GCATCATCAAATGACCAACTTGAGCTACCAATCCGACCGGGCACGCAGGGAAAAAACTTCTGGCCTG	67	+	chr2R	18834957	18835112	18834957..18834981,18835069..18835112				0	no match
CG8886-RB	AGAAGGTGAAGCGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAAATATCCGGAGCTCTCC	65	-	chr2L	4971200	4971265	4971200..4971265	CG8886-RB,CG8886-RA,	FBgn0010607,	l(2)05714,l(2)05714,	1	.
CG8012-RA	CAGCAATGTTCCACTTACTAGAAGCAGTGTGATTGGATTTACAAACGTAAGCTGAGTATAAGAAATTAA	69	+	chr3L	8208986	8209055	8208986..8209055	CG8012-RA,CG8012-RB,	FBgn0040832,	CG8012,	1	.
CG13008-RA	CCCTGTGACATGGATATGCAATCCCTTGGACCCGACGATATGCAAACCCAGATTCAGATGACCGCCGAT	69	+	chrX	16607925	16607994	16607925..16607994	CG13008-RA,	FBgn0030780,	CG13008,	1	.
CG15544-RA	AGATAAACCTAGATAGATGTACCCTAGAACTTAGCCACTAGTTGAGTTCCCACGAGATCAGTGTGTGTG	69	+	chr3R	26667435	26667504	26667435..26667504	CG15544-RA,	FBgn0039804,	CG15544,	1	.
CG8671-RB	CGTCGGTTTCTCCTGGAGGGCTATGACTCAAGACACCGCCTAGACAACTCGATGTTGCGTGTGAG	65	+	chr2L	21274032	21274097	21274032..21274097	CG8671-RA,CG8671-RB,CG8671-RC,	FBgn0032938,	CG8671,	1	.
CG7788-RA	CGGCCCACCCTTATCTATATCTACCTTAGACCATTTACAGACAAGACCTTTTTACAATTTTATACACAT	69	+	chr3R	25627054	25627123	25627054..25627123	CG7788-RA,	FBgn0019972,	Ice,	1	.
CG14618-RA	AGTCATTCAAGAAGAACGAAGGCTGGGAGAACTGGCACGTGCAGTACTACTTCGATCGCGGGCAC	65	+	chrX	21876087	21876152	21876087..21876152	CG14618-RA,	FBgn0031189,	CG14618,	1	.
CG13285-RA	GCTACGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATTATCAGGGTCAGCGGA	69	-	chr3L	5528022	5528091	5528022..5528091	CG13285-RA,	FBgn0035611,	CG13285,	1	.
CG14039-RA	CTTAGATTGCACGCCAAAATGAGCAAAACGATGTCTACGATTTTGGTTCGCGCTAAATTGCATTGTTTT	69	+	chr2L	5070347	5070416	5070347..5070416	CG14039-RC,CG14039-RB,CG14039-RD,CG14039-RA,CG14039-RF,CG14039-RG,CG14039-RE,	FBgn0028572,	qtc,	1	.
CG31809-RA	GGAAAAGCTGATTGCAGTCACCAACGAGATTGTCAACAATGTGGGCACGATTCACGACCCGGAAAGCCT	69	.	.	.	.	.				0	no match
CG8729-RA	TAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAGAAGCCACAGGACTCAAGCAAGTGG	65	-	chr2R	3819242	3819307	3819242..3819307	CG8729-RA,CG8729-RB,	FBgn0023171,	rnh1,	1	.
CG6347-RA	TCGCCGGTCTTCGAGTCTTCAGCATCTTCGAATAGTTTTGTGATTTGTGAACGCGGAAGGTGTTTTGAA	69	+	chr2R	9723935	9724004	9723935..9724004	CG6347-RA,	FBgn0033874,	CG6347,	1	.
CG9046-RA	GCGAACTTTAAGGATCGAAACGAATCTGACTTGACATCTGAACCTAAGAATAAAGTAATGCTTTCAT	67	+	chr2L	5957561	5957628	5957561..5957628	CG9046-RA,	FBgn0003980,	Vm26Ab,	1	.
CG17224-RA	ACCACCTGGACATCAATGTGGCCAATACCCGAGACACCAGTGAGTTACAGAATAGGTTCGGCGATGTTA	69	-	chr2L	3017781	3017850	3017781..3017850	CG17224-RA,CG17224-RB,CG17224-RC,	FBgn0031489,	CG17224,	1	.
CG15212-RA	CAGCCAATTGGGAACCTTGCCTCCCCCACTACATTCGATTTTCAAACCGTTTTGTTTAGACAATACCCA	69	+	chr3L	5125069	5125138	5125069..5125138	CG15212-RA,	FBgn0040842,	CG15212,	1	.
CG15274-RA	TGGAGTGTGGCTTTGGCTTTCAACAAGACCATGGAACGATTGACAACCGGGAAGAAATCTCTGAGGGAT	69	+	chr2L	15026484	15026553	15026484..15026553	CG15274-RB,CG15274-RC,	FBgn0260446,	GABA-B-R1,	1	.
CG14030-RA	ACTCCGCGTTCTAATTTTAAACTATTTTTCTGCGAACAAACTCCCTTTTATTTATTGTTTTGATGCCAA	69	+	chr2L	5282935	5283004	5282935..5283004	CG14030-RA,	FBgn0031696,	Bub1,	1	.
CG33113-RG	GCGGTTGCATTATTCGCATTTCCTCGATCCGTGAACCGCGCGAAAAAGTCGTCCGAACTTTCGCTACAT	69	-	chr2L	4999410	4999479	4999410..4999479	CG33113-RG,	FBgn0053113,	Rtnl1,	1	.
CG4669-RA	ACCCTGTATGGATCCCAGTAAACCGATGGATCTCGATGATTTTCCACGACAGATTCGCTTGGGTCAGTT	69	+	chr3L	5228910	5228979	5228910..5228979	CG4669-RA,	FBgn0035598,	CG4669,	1	.
CG2701-RA	AGCATTGCCAATTTCTATGACATGACTGTGCCCATGTTGTACAAGAACATCTACTTGGTGAACCCGGGT	69	-	chrX	2613057	2613126	2613057..2613126	CG2701-RA,	FBgn0024973,	CG2701,	1	.
CG17019-RA	GATTTTTTAGAGCGTAATGATACGGCTAATCTTACGGTAACTGGACATAGTGTAATGATGGAAGCCGAT	69	-	chr2R	8818819	8818888	8818819..8818888	CG17019-RA,	FBgn0033783,	CG17019,	1	.
CG8403-RA	ACACCATGAGCCAGGTGATCAGCTACAGCATCGATCTCAATCTGCGCATCAAGACGCACTCGGAG	65	+	chr2R	11932373	11932438	11932373..11932438	CG8403-RA,	FBgn0034070,	SP2353,	1	.
CG14566-RA	CACTTTCCGCCGCAGCTCGTCCGGCCAAATTGAGTGCTGCCCGCTCCACCGTGCGACGCTTCTAA	65	-	chr3L	21732865	21732930	21732865..21732930	CG14566-RA,	FBgn0037127,	CG14566,	1	.
CG6896-RA	GCTAGCAATGCCCATCCAATTGCAGCAGCTAATGCCACAACAACTAATGGTTCTGTTTTAGGAGCCGGC	69	+	chr3L	18659054	18659123	18659054..18659123	CG6896-RA,	FBgn0036801,	MYPT-75D,	1	.
CG6806-RA	CCACTACTGGCATCTGATGGAGACCTATCCGGAGTACCACAAGAAGGATTACGCCTTCGAGGGTGTCCA	69	+	chr3L	12123762	12123831	12123762..12123831	CG6806-RA,	FBgn0002565,	Lsp2,	1	.
CG32491-RM	GGCCTGCGGAGTTCAGTCTTGCTGCTCATAGACGTCCGAGGCTAATCATTGCCAACAAGCACTTTATCG	69	-	chr3R	17188482	17188551	17188482..17188551	CG32491-RM,	FBgn0002781,	mod(mdg4),	1	.
CG10960-RA	ACTTGCTGTTAATATACGTTCGATTTAAGTTCGCGTTTAGTGCAAGTCTTTTGGCGTTTTCGATGGATG	69	-	chr3L	12818684	12818753	12818684..12818753	CG10960-RC,CG10960-RB,CG10960-RA,	FBgn0036316,	CG10960,	1	.
CG32425-RB	AACACGTGAGAGAGCGGGAGAAGTATGGGGCAAAGCATAGAACGCGATTACGATTACTGGGGGCC	65	+	chr3L	20502870	20502935	20502870..20502935	CG32425-RB,	FBgn0052425,	CG32425,	1	.
CG7946-RA	GCATCCGCTTATTACCAGACTAAAAAAAAGGTTTTTGCTTCGAAACCCCTAAATATTTTCTAAGTTTGT	69	+	chr3R	25880307	25880376	25880307..25880376	CG7946-RA,	FBgn0039743,	CG7946,	1	.
CG17264-RA	TGCCTGTCTGCGATATTCCCAAGTGCAATGCATGTAATGACTTGCGGGGATATTAACTTTCATTTCGCT	69	+	chr2L	3021190	3021259	3021190..3021259	CG17264-RA,	FBgn0031490,	CG17264,	1	.
CG1819-RA	GATGGACGAACCAACGAGCGACATGGATCCCGTGACCAGGGACATGGTGTATGCCACTATCGAAC	65	+	chrX	21010532	21010597	21010532..21010597	CG34120-RC,CG34120-RD,	FBgn0083956,	CG34120,	1	.
CG7264-RA	ACGCCCGAAGAACTTCGCGTGTTTCGTCTTGGACAAGATCAGCAGCTTCGTTTGTCTATTCAGCGCAAG	69	+	chr3L	11823430	11823499	11823430..11823499	CG7264-RA,	FBgn0036214,	CG7264,	1	.
CG8397-RA	GCCAGCCCTGTCATTGGATTTTACACAACCTCACAAACGGTCACATCATCGGCTGACAATTGGAAAATT	69	-	chr2R	11904601	11904670	11904601..11904670	CG8397-RA,	FBgn0034066,	CG8397,	1	.
CG2911-RA	AGCTACAAACAATTGATACTACAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGA	69	-	chr3R	1448278	1448347	1448278..1448347	CG2911-RA,CG2911-RB,	FBgn0037350,	CG2911,	1	.
CG17759-RF	GGAAAAGTGGCAATGCAAATGAATTATTTATTTATAATGTATATGATTTGTTTTTCAAAGTCCCTCAAT	69	+	chr2R	8506388	8506457	8506388..8506457	CG17759-RD,	FBgn0004435,	Galpha49B,	1	.
CG12837-RA	TGTAATAGCAATCGATCAAATAGCTCCAAAGGACCAACTCATCCTGGGACTGTACATTGCCGTTGGGTC	69	+	chr2R	2952665	2952734	2952665..2952734	CG12837-RA,	FBgn0033139,	Tsp42Er,	1	.
CG31834-RA	GCCGTTCAGTGCGATGATAGTGCATTAAATGTGCTGCGATGGGAGATTGTTGTCTGTCGATGGAATGGT	69	+	chr2L	14999995	15000064	14999995..15000064				0	no match
CG6230-RA	GCACGCTGGTCACCACACTCCAAATGTTCAAGATCCTTGCTCTGAACGCCCTCATTCAAGCCTACTGTC	69	-	chr2L	11117010	11117079	11117010..11117079	CG6230-RA,	FBgn0027582,	CG6230,	1	.
CG18729-RA	ATCAGCTGCGCATTCTGGTCTACATACGCGAGGACATCGTCTCCTACCACACGGATGTCAAGCAG	65	-	chr3R	27038189	27038254	27038189..27038254	CG18729-RA,	FBgn0061476,	zwilch,	1	.
CG32591-RA	TTCTGCAGGAGAACAAGCAAAATGTGTCTAGAATGGAGACCAATGGCAGATGTATAGCGGCGGCC	65	-	chrX	14822703	14822768	14822703..14822768	CG32591-RA,	FBgn0052591,	CG32591,	1	.
CG4947-RA	CCGGAGCACTCCATCGAAATCCAGAACGCCATTGGTGGGGATATTATGATGCAGCTGGATGATGTGGTC	69	+	chr2L	1184632	1184701	1184632..1184701	CG4947-RA,	FBgn0031321,	Tgt,	1	.
CG7203-RA	AGGTCTGTCCTCTGCTGAGATCCCGTTGGGTTCTCATTTCTTCAGCAATCTAAGTCAATCCTATCCAGT	69	-	chr2L	7752267	7752336	7752267..7752336	CG7203-RB,	FBgn0031942,	CG7203,	1	.
CG8389-RA	TGGGATGGGTGCGAGACTACGCCGACTCCTACCTAATCTGCCTTTATGCTCAAGGAGTCATTCTGCT	67	+	chr2R	11900850	11900917	11900850..11900917	CG8389-RB,CG8389-RA,	FBgn0034063,	CG8389,	1	.
CG7221-RA	GCCGGAGAAATACTGGAGCATGATGGCCTACAACAATGCCAAGCTATGCAATGTCTTGTTCGCCCAGGA	69	-	chr2L	8000313	8000382	8000313..8000382	CG7221-RA,	FBgn0031972,	Wwox,	1	.
CG32255-RA	GTGTGCCCAAGGAGTCCTGGTGTCCGGAGGTGAAACGATTTACGGAGGAGGTAATCAGCGATGAG	65	+	chr3L	4037268	4037333	4037268..4037333	CG32255-RA,	FBgn0052255,	Gr64f,	1	.
CG3767-RA	GACATTGCGAGTCTCCTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCGTGTCCATTTTTGCCGAGGT	69	+	chr2R	12178088	12178157	12178088..12178157	CG3767-RA,	FBgn0028424,	JhI-26,	1	.
CG4696-RA	GTGCCCGACATCGATGTCTTCCAGACCGTCGATCTGTACGAGAAGAAGGATATTGCCAACGTTACCAAC	69	+	chr2R	9134661	9134730	9134661..9134730	CG4696-RA,CG4696-RB,	FBgn0002789,	Mp20,	1	.
CG11061-RA	CCACAACCATGCAGGAGACCATCTCAACTGTTGTATGGGCAAGTTCGAGGTAGTCTAAAAGAAGTGCAA	69	-	chr2R	18012253	18012322	18012253..18012322	CG11061-RB,CG11061-RA,	FBgn0034697,	GM130,	1	.
CG12241-RA	AGGCTATCCTTAAAGTGGGTCGTCATTTCATCACCATTGAACCCAAGCTTGCCGGTCACATCCAGCTGA	69	+	chr3R	11046736	11046805	11046736..11046805	CG12241-RA,	FBgn0038304,	CG12241,	1	.
CG12311-RA	TGCCCAAATGGATTCACCACGTTATCCTCGGACTGGTTCTCTCGATCCTGGTGTATAGTTTTGCCGCCT	69	+	chrX	681701	681770	681701..681770	CG12311-RA,	FBgn0086368,	tw,	1	.
CG31729-RA	GCTCGGTTGCTTTGTATCAGGGCTTTCTCATGGTCGGTTACTCGACGCTGTACACTATGTTCCCGGTGT	69	+	chr2L	13300405	13300474	13300405..13300474	CG31729-RB,CG31729-RA,	FBgn0051729,	CG31729,	1	.
CG8245-RA	TGGGGAGCGTAGGATAATAAGCCTGTATCGCGCCATTACAGCCATCTATGGTAGGGAAAAACGCTGCAA	69	+	chr2R	1556800	1556869	1556800..1556869	CG8245-RA,	FBgn0033031,	CG8245,	1	.
CG2522-RA	CGTCGATCCGGCTATCCTTCCAATGCTCCTTGTTTGCATCCACTCTTTTCACCGAATCAAATATATGGC	69	-	chrX	11020932	11021001	11020932..11021001	CG2522-RA,	FBgn0010391,	Gtp-bp,	1	.
CG16996-RA	TAGTCGAGTTTTTCCCTATTTTTTCAATAAAAGCAATCAAATGTGTGTCCCTAGTGGCGGTCACT	65	+	chr2L	12110456	12110521	12110456..12110521	CG16996-RA,	FBgn0263234,	Phae1,	1	.
CG14358-RA	TGCTAAACAGCATCCCTTGCCAAATTCATATGGCTTGGATAGCGTGGTGGAGCAACTGTACAACAAC	67	-	chr3R	9918702	9918868	9918702..9918759,9918858..9918868	CG14358-RB,	FBgn0038199,	CCHa1,	1	.
CG32410-RA	CGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGTGCACAACACTGATGTGGATGGCAAGCC	69	+	chr3L	5918096	5918165	5918096..5918165	CG33523-RD,CG33523-RE,	FBgn0053523,	CG33523,	1	.
CG5909-RA	GCATTCCGCCCTACGAGGAGTACGGCATAGAGCAGATACGAGTACATCCCAACTACGTGCATGGCAAGA	69	+	chr3R	22987977	22988046	22987977..22988046	CG5909-RA,	FBgn0039495,	CG5909,	1	.
CG5887-RC	AGGATGCTGTCATTACACACAAAAAAAGCGAATAGGCAGGTTGAGCGTAGGGCCAATCATGGGAGGGTT	69	+	chr3R	8272628	8272697	8272628..8272697	CG5887-RA,CG5887-RC,CG5887-RE,CG5887-RB,CG5887-RD,	FBgn0086687,	desat1,	1	.
CG7778-RA	AGCGCGAAAAACCAAACGCAAACGGTCCAATTAAACTAGCATAAATACTATACACTAAACAATTATCTA	69	+	chr2L	8346692	8346761	8346692..8346761	CG7778-RA,	FBgn0032025,	CG7778,	1	.
CG8838-RA	AAGAAGACCAGTGCCAATTCCTCCAAGACGGTCGTCATTCAGCCTCGCAAAAGGAAAGTAGCCGG	65	+	chr2L	3358121	3358186	3358121..3358186	CG8838-RA,	FBgn0031526,	CG8838,	1	.
CG15676-RA	ATTGCAACATGAGCACGATATCGACTATCTGCAGGATCAGGTGAACACGATTGAGATGAACCTAGCCGT	69	+	chr2R	17559685	17559754	17559685..17559754	CG15676-RA,	FBgn0034651,	CG15676,	1	.
CG17593-RA	CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTGTATTTGCAGTTGGTACCAA	69	+	chr2L	3516159	3516228	3516159..3516228	CG17593-RA,	FBgn0031544,	CG17593,	1	.
CG6868-RA	GGTCATGAACTACCTCCAGTGGTGAATTCCGAGCAGAGTATCCTCAGGCTGGAGTTCTACTCGGATCGC	69	+	chr3R	20578030	20578099	20578030..20578099	CG6868-RA,	FBgn0003719,	tld,	1	.
CG13908-RA	CGAGGATCACACAGATCAGACACGAGCACTACGGAAAGGGTGGATTTACGAGGGTGGTAAAATTCGGGT	69	+	chr3L	991314	991383	991314..991383	CG13908-RA,CG13908-RB,	FBgn0035178,	CG13908,	1	.
CG4583-RA	GGAATGTCCATCTGGACCCCATGATCACGGATGATTTGAGGAAGTACCGCGGATATATGGGCGCCAGTG	69	-	chr3R	15680757	15680826	15680757..15680826	CG4583-RC,CG4583-RB,	FBgn0261984,	Ire1,	1	.
CG1650-RA	AGTTAGTTTCGATCGCCCTGAAAGTGTGCTTTTGAGTGGGCAATATGGAACGACCGGCCTTGCTG	65	+	chr2R	5082794	5082859	5082794..5082859	CG1650-RA,	FBgn0015561,	unpg,	1	.
CG31243-RA	CGCCACTTTTGGTTGAGACTTTTCTGCGTTTCCCCTACAAAGACTTGAACTTTTACTAGAGGCCCCCAA	69	+	chr3R	13840553	13840622	13840553..13840622	CG31243-RB,CG31243-RK,CG31243-RI,CG31243-RJ,CG31243-RM,CG42457-RC,CG42457-RA,CG42457-RB,	FBgn0000363,FBgn0259934,	cpo,CG42457,	2	.
CG6304-RA	GGCGTGTGAAGGTACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAGGGAACA	69	-	chr2L	17012795	17012864	17012795..17012864	CG6304-RA,	FBgn0032624,	CG6304,	1	.
CG13980-RA	CGACTCAGGCGCTACAACTTCAGCGAGTACACGTTTAAGAACTTCGAGCTCTTCCTCTACGAGACGCTT	69	+	chr3R	23195010	23195079	23195010..23195079	CG42534-RC,	FBgn0260487,	CG42534,	1	.
CG8577-RA	CACTCACATCTGGAACGAGATCCGCGGCTGGTCCCACTGGTCTGGTTAGAGTGGTTCCTGAAAAG	65	+	chr2R	4601489	4601554	4601489..4601554	CG8577-RA,	FBgn0033327,	PGRP-SC1b,	1	.
CG8781-RA	GCTTCGTTAAGGGACCGAAGCGCGTTAAAAAGTCCGAAAAGCGTCGCAGATAAACGACTCCCAGCC	66	+	chr2R	4998934	4999000	4998934..4999000	CG8781-RA,	FBgn0033378,	tsu,	1	.
CG17134-RA	CGCCATCGAATACGGAACTGGTAGTCTGTCGGGTTTCCTGTCCAACGACATTGTGACCATAGCGGGAAT	69	+	chr2L	10821136	10821205	10821136..10821205	CG17134-RA,	FBgn0032304,	CG17134,	1	.
CG7172-RA	GGCCCAGAGCAATGTGAATCCCAAGATTTGCTTCGATTCCCACGGAGAGAAAGACAGCAGGCAGGTTAT	69	-	chr3L	21561601	21561670	21561601..21561670	CG7172-RA,	FBgn0037102,	CG7172,	1	.
CG10335-RA	GGTGCCGATTGCATCATCACCTACTACACACCCTTTCTGCTGGACATTATCGGAAAGGTCAAGTAATGG	69	-	chr3L	12263388	12263457	12263388..12263457	CG10335-RA,	FBgn0036271,	Pbgs,	1	.
CG11205-RB	GGCATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGGACTGGTCAGCTGCTTATGCTTCGCTG	68	+	chr2R	3713903	3713971	3713903..3713971	CG11205-RA,CG11205-RB,	FBgn0003082,	phr,	1	.
CG3710-RA	CACACCACACATCCTTCATATTCTTAAATGAAACATTGTAAAGACACGACACGCGAGAAAACATTTTGT	69	-	chr2L	15059378	15059447	15059378..15059447	CG3710-RA,	FBgn0010422,	TfIIS,	1	.
CG4582-RA	ATGGCAACTACAACATCTTCACTGTGGACTGGGGACGTGGAGCCATAGCGGACTACATAACGGCC	65	-	chr3R	21407845	21407910	21407845..21407910	CG4582-RA,	FBgn0039344,	CG4582,	1	.
CG32521-RC	CAGCGATTTTGACGCAAATTATAAACGTACCAACTTTTGATCCAAGGGCGTGACATCGATAGCGA	65	-	chrX	21082791	21152098	21082791..21082826,21152068..21152098				0	no match
CG11164-RA	ACCTGCACATTCCTAGCGAGATTCAGGCGATTGTTGAGGAGAAAGCAGCTTCTCAGAAGCGCAAGTCG	68	+	chrX	13562912	13562980	13562912..13562980	CG11164-RA,	FBgn0030507,	CG11164,	1	.
CG7825-RA	ATTTGTCTGTGATGGGCTTAAACGTTGCCATACGAGGAGTTATGATGTCCAATACGTGCCCTGTCAGCG	69	-	chr3R	10487267	10487336	10487267..10487336	CG7825-RA,	FBgn0025808,	Rad17,	1	.
CG4702-RA	TCACCTGGTCTAACATGCTATCCACCGTGATGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCA	69	-	chr3R	7949250	7949319	7949250..7949319	CG4702-RA,CG4702-RB,CG4702-RC,CG4702-RD,	FBgn0037992,	CG4702,	1	.
CG4898-RC	CACGACGATTACGAATGATGCTTGAGGGCAGTTAGAGCTTAGATCTAGACCTAGATCATGCACAGCCCG	69	+	chr3R	11122789	11122858	11122789..11122858	CG4898-RI,CG4898-RC,CG4898-RH,	FBgn0003721,	Tm1,	1	.
CG32491-RX	GCCCTTCTTCCGCAAGATGTTCACTCAGATGCCGTCGAACACCCACGCTATCGTATTCCTGAACAACGT	69	-	chr3R	17202447	17202593	17202447..17202463,17202540..17202593	CG32491-RG,CG32491-RH,CG32491-RI,CG32491-RJ,CG32491-RK,CG32491-RL,CG32491-RM,CG32491-RN,CG32491-RO,CG32491-RP,CG32491-RQ,CG32491-RR,CG32491-RS,CG32491-RT,CG32491-RU,CG32491-RV,CG32491-RW,CG32491-RX,CG32491-RY,CG32491-RZ,CG32491-RA,CG32491-RB,CG32491-RC,CG32491-RD,CG32491-RE,CG32491-RF,CG32491-RAA,CG32491-RAB,CG32491-RAC,CG32491-RAD,CG32491-RAE,	FBgn0002781,	mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),	1	.
CG9449-RA	ATGGACGCACGCATACTTCCCGGAGAAGCTTCAGTTCCTCGCCGAACAGAGCTACATCTACAACGTG	67	-	chr3L	19485947	19486014	19485947..19486014	CG9449-RF,CG9449-RD,	FBgn0036875,	CG9449,	1	.
CG9099-RA	TTTGCAGTAGCCGACTTCTTAAAACTGTCATTATTTTAATATTTCAATAACCCGGAGCAAATCCCAG	67	-	chrX	16780489	16780556	16780489..16780556	CG9099-RA,	FBgn0030802,	CG9099,	1	.
CG15160-RA	CGTCAGCAGCCTTCATCAAGGGGAATCTAGGACAACACGTGCAAAGACTTTACACTTACACCCTCGACT	69	+	chr2L	18594596	18594665	18594596..18594665	CG15160-RA,	FBgn0032688,	CG15160,	1	.
CG17764-RA	CCCGACCTCCAGTCCCAATCTCAGTTCAATCTGGAATCTGAACAGCAACCTCAACCGGAAACCAACAGC	69	-	chrX	5200702	5200771	5200702..5200771	CG17764-RA,	FBgn0029751,	CG17764,	1	.
CG8200-RB	CCAGCGCGACTTTGAGCTGAAGAAGGCAGCATACGATGTGGAAGTGCAGACCAAAAAGGCCGAGG	65	-	chr2R	11454992	11455057	11454992..11455057	CG8200-RA,CG8200-RB,	FBgn0024754,	Flo,	1	.
CG2662-RA	TCCTTACGCCTAACGCCAATCACAGCTGTAGAGAGAAGAAGCCATCCAGTATCAACCTGGTCCGTGGAA	69	+	chrX	2594449	2594518	2594449..2594518	CG2662-RA,	FBgn0024993,	CG2662,	1	.
CG15654-RA	TGGTAGACAATACGGATCCGTGGTCCTTCTGGGATGCCATGGTCTATTCCGCTACGATTTACACGACCA	69	+	chr2R	16981345	16981414	16981345..16981414	CG34396-RC,	FBgn0085425,	CG34396,	1	.
CG4620-RA	TTATGAATCTCCACGAGATGTACATGGGATGTCTATCGAACTACGCGTTTTTTCAACCCCATTCCAAAA	69	-	chr3R	18977513	18977582	18977513..18977582	CG4620-RA,CG4620-RE,	FBgn0004395,	unk,	1	.
CG9160-RA	AAACGTTAAATTAACTTGTAGTCAGCAATTGTACACGAGGGCTATAATTAACTGCGGAATAGCAG	65	+	chr3L	1331548	1331613	1331548..1331613	CG9160-RA,CG9160-RB,	FBgn0011361,	mtacp1,	1	.
CG9012-RD	AACAAGGCAATCAACGAAGCCCTGAACGGACTCTTAATCGACGAGGAGGACTACCAGGGTCTGCG	65	-	chrX	15723091	15723156	15723091..15723156	CG9012-RA,CG9012-RB,CG9012-RC,CG9012-RD,CG9012-RE,CG9012-RF,	FBgn0000319,	Chc,	1	.
CG4940-RA	ATTCCATCACCGATCTTCGGGATAATGCCTCCATGCAGAGTTTCGTCTCAACAGCGTCAACTCAGCCGG	69	+	chr3R	8228465	8228534	8228465..8228534	CG34402-RC,CG34402-RD,	FBgn0085431,	CG34402,	1	.
CG10108-RA	AGAGCCACCACAAACAAGGAAACAGCCACCAAAATTCCCACCAAGCTTCAATCCAACTCGCTGGC	65	-	chr2R	10315271	10315336	10315271..10315336	CG10108-RA,	FBgn0013725,	phyl,	1	.
CG8430-RA	ACTTTGGCCTCTACTGCGAACGTACCGGCAATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAG	65	+	chr2R	12028601	12028666	12028601..12028666	CG8430-RB,CG8430-RA,	FBgn0001124,	Got1,	1	.
CG4462-RA	GTGTGTCCCCGGTAGTGCCACACTTGGAGCAGAGAAACACGAAGGAGCAGTCTCCATTGAACGCC	65	-	chr3R	15747684	15747749	15747684..15747749	CG4462-RA,CG4462-RB,	FBgn0038752,	CG4462,	1	.
CG33121-RA	ACCGCCGAGGAACTAAGAAGCGTTCTTGACCTACCAGTGGATGTGACAGAAATGGCCAAGAAATACGAA	69	-	chr2L	7890374	7890443	7890374..7890443	CG33121-RA,	FBgn0053121,	Spn28Db,	1	.
CG9104-RA	GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCACAAGCCGGACCCGCC	65	-	chrX	16777612	16777677	16777612..16777677	CG9104-RA,	FBgn0030800,	CG9104,	1	.
CG10970-RA	TGGATACACGATAATTGGAGGCAATTACGATCGGATCTGGAGGTTCAAAGTCAGGGTCACAGAGCGCCG	69	-	chrX	8964207	8964276	8964207..8964276	CG10970-RA,	FBgn0030078,	CG10970,	1	.
CG31151-RA	CGAAGCAATATCAATCCATATACGATAACAATGATACATATTATTTAGCCGGGCACTATAACCCAAGGT	69	-	chr3R	18537535	18537604	18537535..18537604	CG31151-RA,CG31151-RB,CG31151-RC,	FBgn0051151,	wge,	1	.
CG8353-RA	GCCGAGCAGTTTTCACACCTATCGAAAGTAACGACCACTGCAGGCAAGAACCGAAAATAGGCAGAAGGT	69	+	chr2L	8215083	8215152	8215083..8215152	CG8353-RA,	FBgn0032002,	CG8353,	1	.
CG4977-RA	CGCAAAGAAATCCCAGGCCTAGAAGACTACTAGACATGTGGGGGGGTTCCTATGTGGGCTATGTGTGCT	69	+	chr2L	11625349	11625418	11625349..11625418	CG4977-RA,	FBgn0015400,	kek2,	1	.
CG5803-RA	AATCAGGAGTCGTTGAATATTGTGGAGGGAAGCGTACAGGAGATTCCAGCGACCAATAATGCCATCGAT	69	+	chr2L	18391274	18391343	18391274..18391343	CG5803-RA,	FBgn0000636,	Fas3,	1	.
CG15115-RA	AGCAAGGAATCAGGAGGAGAAGTCGCACTTGGAACAGAGAAAGCTAGAAAGCGATCGTGAAATGGAGGA	69	-	chr2R	14923186	14923255	14923186..14923255	CG15115-RA,	FBgn0034413,	CG15115,	1	.
CG32225-RA	AGGATTGGGCAACTGCCTCAACGTGGCACTGATTTACTCAGCGCTCCTAGCACTTTTCATGACCG	65	-	chr3L	20298998	20299225	20298998..20299004,20299166..20299225	CG32225-RA,	FBgn0052225,	CG32225,	1	.
CG11070-RA	GGCTGAAGCATTGGAATTTCTCTTGCCCTCACGGATTATGGGAAGCCATCGCAAGACTTTTGTCAGCCA	69	+	chr2L	6660552	6660621	6660552..6660621	CG11070-RA,	FBgn0028467,	CG11070,	1	.
CG17662-RA	GCGACGAGGAGATCGATCTGAGGACTTCCGATGCCAAGATACGAATGATCGGAGAGGTTATAGTGCAAT	69	-	chr2R	19493282	19493351	19493282..19493351	CG17662-RB,	FBgn0034884,	CG17662,	1	.
CG17273-RA	TTGATGAGGACGTACTTAGTTTTTAAGATCATCAGGTGCAGTTTCAGATTTTTTGTATGCAAAGGGAAG	69	-	chr3R	16650497	16650566	16650497..16650566	CG17273-RA,	FBgn0027493,	CG17273,	1	.
CG4141-RA	GCCGAGAACTACCCAATCGACAACCCCTCGATCCATAGCTGATAGTGTCGCTCCCACAAGTGCTC	65	-	chr3R	16455208	16455273	16455208..16455273	CG4141-RA,CG4141-RB,	FBgn0015279,	Pi3K92E,	1	.
CG33093-RA	TGCCAGGAGCACTCTTCATAAACTGCGGTGAAACCATGGCTATCTGGACAGATCAGTTCTACCACGCTT	69	-	chr3R	18356794	18356863	18356794..18356863	CG33093-RA,	FBgn0053093,	CG33093,	1	.
CG8295-RA	ATGCAGATGCGCTCGATGAATCGCCTGATGAACAGCTTTATGCCCGATCCCTTCATGCAGGTCTC	65	-	chr2R	11826663	11826728	11826663..11826728	CG8295-RA,CG8295-RB,CG8295-RC,CG8295-RD,CG8295-RE,CG8295-RF,CG8295-RG,CG8295-RH,	FBgn0034051,	Mlf,	1	.
CG17068-RA	TGCATGCTTGATTTTAGCTGCCTAATGATAATGATTATCCAAACGTCCCTCTCAACGAACACCACTTAA	69	-	chrX	20119509	20119578	20119509..20119578	CG17068-RA,	FBgn0031098,	CG17068,	1	.
CG6238-RA	GGCCATGCTCTGCTTAACAACATGCTAACTGCAAACTGCAACATTCACATACCACTTGCAACTTGCAAT	69	-	chr3R	20765080	20765149	20765080..20765149	CG6238-RA,CG6238-RB,CG6238-RC,CG6238-RD,	FBgn0029157,	ssh,	1	.
CG7878-RA	ACCAGGAGTACGTCGTTTAGCGCAGAGCTATATGAAGAATCCCATCCAGGTGTGTGTCGGATCGCTCGA	69	+	chr3R	3950106	3950175	3950106..3950175	CG7878-RA,	FBgn0037549,	CG7878,	1	.
CG12347-RA	AGGCTTTGCCATGGACGAGTTACTAAATCTGGGTCTCAACGGCATACAGTTTGAACTGGAGGAATCTGC	69	+	chr3R	13732240	13732309	13732240..13732309	CG12347-RA,CG12347-RB,	FBgn0038558,	CG12347,	1	.
CG12863-RA	GATGCCTGTGTGAAACCCAACTATGTGCATTGCTCCGACTGTAGAAGGTGCACGCAGAAGGAGGGAC	67	-	chr2R	10507558	10507625	10507558..10507625	CG12863-RA,	FBgn0033948,	CG12863,	1	.
CG8412-RA	GCAAGGACGAGACAATGAACTATACCCAGGCGGATTTGGTTGCATACACACATCTTTTGGTCGAGGCGA	69	+	chr3R	5584106	5584175	5584106..5584175	CG8412-RA,	FBgn0037743,	CG8412,	1	.
CG32467-RA	AACCGTCGGACATGAGGAGCAGAAACCCATCATCGAAGAGAACCCAACGCCGAATGTTAGTATGGGAAT	69	-	chr3R	3127466	3127535	3127466..3127535				0	no match
CG31848-RA	CCCCAAAGCCGGGTCTTAGTTGTGCTGTTACTTCGGATCTGCAGATTGTCCACCATCTGCCCATTATCC	69	-	chr2L	13265406	13265475	13265406..13265475	CG31848-RB,	FBgn0051848,	CG31848,	1	.
CG10426-RA	GATCGCATTCTCTACAAGTACCGCCAAATGCAGGGACTAGTCATCCGTCGGCAGACCCTAGTGCC	65	+	chr3L	12273769	12273834	12273769..12273834	CG10426-RA,	FBgn0036273,	CG10426,	1	.
CG4660-RA	CCCGAATAATGAACTAGAAATACAAACAAAACTCCTTGGTAGTCCACAGTGTGTAAGCTATGATGTACA	69	-	chrX	5972776	5972845	5972776..5972845	CG4660-RA,	FBgn0029839,	CG4660,	1	.
CG11498-RA	GGATATTCAGCAGCGACTGATCGACAACAAGACCCTGCTCACAATGCTAGACAAGCCGGCTCTCAAGC	68	-	chr3R	25981078	25981146	25981078..25981146	CG11498-RB,	FBgn0039749,	CG11498,	1	.
CG12301-RA	TGCCCACGTTGAAGGTAACACAGAAAGCACGGAAATTCCAGCTGTGGATACCATAGATCCCAACAAGGT	69	+	chr3L	15575658	15575727	15575658..15575727	CG12301-RA,	FBgn0036514,	CG12301,	1	.
CG7911-RA	CGGCGAGACCCGTAGCTTAAGACCAAATGTCGAGTTCCCCAATGGATCAGTGACCTTCAAACTGGTGCA	69	-	chr3R	25829742	25829811	25829742..25829811	CG7911-RA,	FBgn0039735,	CG7911,	1	.
CG2321-RA	CCAAGCGCTTGGTGCAACAGAACTTCCATGTGCACAAGGAAACCTTTTCGCATTTTTGCAAGAGCTTCA	69	-	chr3R	25313325	25313394	25313325..25313394	CG2321-RA,	FBgn0039663,	CG2321,	1	.
CG8938-RB	TCACCGAGGTCTAAGTTCACCGAACAGGACTTGGGAGGATGGGAAAGCATTGCACAACCACTCAGA	66	-	chr2R	12981513	12981579	12981513..12981579	CG8938-RA,CG8938-RB,CG8938-RC,	FBgn0010226,	GstS1,	1	.
CG12259-RA	AGCCGATGGGAGCCCTACGATCCCACCAAGTCCTACGACAAGTACACCATCAAGGACAAGGATAAGAGT	69	-	chr3R	23745645	23745714	23745645..23745714	CG12259-RA,	FBgn0039557,	CG12259,	1	.
CG15598-RA	CGTGAACGAGCAACTTTGAAGTCAAAATTTCCTTGTTAAAAACCGAACTGTAAATAAGATAAAACACGT	69	+	chr3R	2152570	2152639	2152570..2152639	CG15598-RA,	FBgn0037427,	Osi17,	1	.
CG7867-RA	TGGCAGCTAAGAAGGTTTTTGCTAGGACAAGTGCTCCATTTTTCAAATCTTTCCATCACATGCATACTT	69	+	chr3L	14225684	14225753	14225684..14225753	CG33991-RM,CG33991-RC,CG33991-RD,CG33991-RB,CG33991-RE,CG33991-RF,CG33991-RG,CG33991-RH,CG33991-RJ,CG33991-RK,	FBgn0013718,	nuf,	1	.
CG18476-RA	AAAGAAATCCCTCACCGTTCACCTGCTTAGCGTACATGCGGAGGAATCCAAGCTGATTCCCTGCC	65	-	chr3R	7501997	7502062	7501997..7502062	CG18476-RA,	FBgn0037931,	CG18476,	1	.
CG17170-RB	ACGGCGTGCTAAACCGAAATGCGTTGCTATATTTTGCCTATGCGGACTTTGAAGAAGGACGGCTCAAGT	69	+	chrXHet	78096	78165	78096..78165	CG17170-RB,CG17170-RE,CG17170-RF,CG17170-RG,	FBgn0003559,	su(f),su(f),su(f),su(f),	1	.
CG31761-RA	TCTCGAGTGCACAAAAACGAAACGCAAAAATCAACCCTACCAAAGAAGTAGCTTAAAAGTTGCATCCCT	69	+	chr2L	12396770	12396839	12396770..12396839	CG43065-RE,CG43065-RC,CG43065-RA,CG43065-RD,CG43065-RF,CG43065-RH,CG43065-RG,CG43065-RI,CG43065-RJ,	FBgn0262475,	bru-2,	1	.
CG3815-RA	AGGGTTAGGGTTAGCAGATACCAGTTCAACTTCATCGCATCAATCATCGCAATGCAAAGCCTCGGCAGT	69	+	chrX	6192663	6192732	6192663..6192732	CG3815-RA,	FBgn0029861,	CG3815,	1	.
CG3758-RA	AGTGCAGACACACAACTTCAAGCAGAATTTCACTTGTTTTTTAATTTCTAGTCAGCATTTTCTCCCAGA	69	+	chr2L	15335609	15335678	15335609..15335678	CG3758-RA,	FBgn0001981,	esg,	1	.
CG13935-RA	AAAACCCAAATACAAAATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGTTGGCTCTCTTCGCCAGTGT	69	-	chr3L	1834905	1834974	1834905..1834974	CG13935-RA,CG13935-RB,	FBgn0035280,	Cpr62Bb,	1	.
CG14811-RA	TATGCCGAAATCAAGAGCCTCTGGTTGAAGGGTCATTTCTCCCAAGCTTGTAACCCCACCTCGCG	65	-	chrX	1715806	1715871	1715806..1715871	CG14811-RA,	FBgn0029590,	CG14811,	1	.
CG2713-RA	CAGCACACTGGCCATATTTTTCGTCGACTTTTGGAGTAGTTAGTGGGAAGCAGTAGCAGACAGCAGACA	69	-	chrX	2624397	2624466	2624397..2624466	CG2713-RA,	FBgn0250874,	ttm50,	1	.
CG8985-RA	ACCTGGCAGTTATGCTGGAGTATATACCCTACACCATACACGACTACATCCTGACGGACAGTTTG	65	+	chr3L	2342787	2342852	2342787..2342852	CG8985-RA,	FBgn0035331,	DmsR-1,	1	.
CG1828-RA	AATCGGATGAGGAGTCGGACGAAGATTCCGAGTACTCAGAGGCATCAGAAGACAGCGAGGAAAGC	65	-	chr3L	1872803	1872868	1872803..1872868	CG1828-RB,CG1828-RA,	FBgn0002183,	dre4,	1	.
CG10346-RA	GTACCCCGCACCATGCTAACATCACACCACAATCCTCAAATCCTCTCTTGAAGCCTCAGCAGTTGCTGG	69	+	chr2L	18710650	18710719	18710650..18710719	CG10346-RA,	FBgn0032705,	Grip71,	1	.
CG15177-RA	GCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCTGCAACCTCGAAGATGTCCACCTTGG	69	.	.	.	.	.	CG15177-RA,	FBgn0037461,	CG15177,	1	.
CG13410-RA	AGCCGCAACGAGTACTACGCCACACAGTCAAAGACCTTTAAGGTGTGACCTGGCTAATCAAAGATACTA	69	+	chr3R	17849882	17849951	17849882..17849951	CG13410-RA,	FBgn0038923,	mRpL35,	1	.
CG7748-RA	TCGCCGCCTCAAATTCAACTTTCACATACTTCCCGACTCGTGCGACACAATTTTATCGAGTTGCTGCTT	69	-	chr3R	20892536	20892605	20892536..20892605	CG7748-RA,	FBgn0011336,	OstStt3,	1	.
CG1693-RB	CACCAAAACTACTCCAAGTAGGTGTTGCTATTATACCATGGTGCACAAAAAAAAGAATCATAGCTGCAT	69	-	chrX	21203995	21204064	21203995..21204064				0	no match
CG4274-RA	CAATGGTGAAGCAAGCCGATTTGACTGGACACACGTCACGAGTTCTCCAGATGGCCATGTCTCCG	65	+	chr2L	16312621	16312686	16312621..16312686	CG4274-RA,	FBgn0001086,	fzy,	1	.
CG15259-RA	GGGTCACGATGATGTTCCTCAACGATCTCGAGATTGCCGACTATGGATCATCGGATGACGAGACCGGCT	69	-	chr2L	15318410	15318479	15318410..15318479	CG15259-RB,	FBgn0041103,	nht,	1	.
CG17027-RA	AGCGGGCGAGATCCTCATGGAGGGCTACGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTA	69	+	chr3L	15973534	15973603	15973534..15973603	CG17027-RA,	FBgn0036553,	CG17027,	1	.
CG8527-RA	TCTGGGAGAAGTTCCAGACCAATCCGACAATCACTGGCCTCGACACCGACTTCCACAACCAGAAC	65	-	chrX	17462874	17462939	17462874..17462939	CG8527-RA,CG8527-RB,CG8527-RC,	FBgn0030844,	ppk23,	1	.
CG4300-RA	ACCACCAAGGCGTTTGTGCCGTCGTTCATGGAAGAGTGGCTCTTCTACCAAGTGACTTTCGCCTG	65	-	chr3L	12265558	12265623	12265558..12265623	CG4300-RA,CG4300-RB,	FBgn0036272,	CG4300,	1	.
CG3830-RA	CGACTTTGGGTCGGGATTTTGAGAGCGCTTCTTAAGCAAAACTGCAGTGTCTGTGTTTCTGTGTGAGCA	69	+	chr2R	8786340	8786409	8786340..8786409	CG3830-RA,	FBgn0003975,	vg,	1	.
CG31287-RA	ACTTCCCATCGATGATACCCTGAGATCAGTAAAGTGCACCATGCTTAGGGTAGAAATGGAGCTGCATGA	69	+	chr3R	12029371	12029440	12029371..12029440	CG31287-RA,	FBgn0051287,	CG31287,	1	.
CG12948-RA	TGGGCTAGGCCGACTAAAAAGACTTTGTTCGCACTCTGTAGCCCTTAGCCACGTTCATTTCATCGCCTA	69	-	chr3R	5571953	5572022	5571953..5572022	CG12948-RA,	FBgn0037739,	CG12948,	1	.
CG5857-RA	TCGCTGCTGCCTACGATCAGTTACACCGCCGTATTTTGTCTTTTCGGACCCATGGTATGCCACAGACTT	69	+	chr3R	19750931	19751000	19750931..19751000	CG5857-RA,	FBgn0039125,	CG5857,	1	.
CG2813-RA	CCTGCTCACCGCACTATTAGGACTTGGATCTTGGCTCATTCCACGCTCTTAGCCTCAAGAGCCTTTGCT	69	+	chr2L	575184	575253	575184..575253	CG2813-RA,	FBgn0031268,	cold,	1	.
CG10200-RA	AAGTGACGAAGTGTGTGTTCTTACAGATCCATACCGCTTCACAATGAAGTACGCTGTGATTGCCATCGC	69	+	chr2R	10696044	10696113	10696044..10696113	CG10200-RA,	FBgn0033968,	CG10200,	1	.
CG18545-RA	CCGACGAGAAGTCTTACAAAAGATCTCCCAAAATGAAGGTCATATCAATGAAGCAGTCACCTCTG	65	+	chr3R	6167125	6167190	6167125..6167190	CG18545-RA,	FBgn0037812,	CG18545,	1	.
CG3307-RB	GGTGCTATATGTACTACTTCAAGCACAAGTCCCAGCAGTACTGCATCGATGCAACCGTTGACACCGGCA	69	+	chr3R	10144226	10144295	10144226..10144295	CG3307-RC,CG3307-RA,CG3307-RB,	FBgn0011474,	pr-set7,	1	.
CG2647-RA	ACGCTTCCGTGGGATGTCACCATTCAGTATCCGAACAAGTAACGAAAGCATCAGACGAACTGACGTGGA	69	+	chrX	2586527	2586596	2586527..2586596	CG2647-RA,	FBgn0003068,	per,	1	.
CG13920-RA	TCGTCTAAAATTAGCGACCGGTGTGTTTTGGTAGGGTGTTGTATTGGCTAGGGGCTCCCAGTGAACT	67	+	chr3L	1649281	1649348	1649281..1649348	CG13920-RA,	FBgn0025712,	CG13920,	1	.
CG32457-RA	AGCGAATCGAAACAAGGATCATAGTCCCCATGATCCCCACAAAAACCTGAAAAGAAAGGCAGAGGCACT	69	+	chr3L	22981112	22981181	22981112..22981181	CG32457-RB,CG32457-RC,	FBgn0052457,	CG32457,	1	.
CG12934-RA	ACAACATTCTTCGCAAAATCATCAGGTGGAACTGGAAATCAAGCAGGTGGAACAGAAGCCTCCACAGCA	69	+	chr2R	6536874	6536943	6536874..6536943	CG12934-RA,	FBgn0033541,	CG12934,	1	.
CG6362-RA	TCCCAAAACTCCTCCATTGCAATTGCAAAAGGTCGAAGGCAGATGGGGGAATTGCTTTGATGCCGACTT	69	-	chr2R	13659746	13659974	13659746..13659761,13659920..13659974	CG6362-RA,	FBgn0028740,	CG6362,	1	.
CG6759-RA	GGCAGCCTATTTTAAGGCCACACAACTGATGCGAGGTTGTCATCTCCCGTTGCTTTACATAGGTGTGGA	69	+	chr3R	19108696	19108765	19108696..19108765	CG6759-RA,	FBgn0025781,	cdc16,	1	.
CG16971-RB	GCAACGATGATGAGGAACGGAACACAAACAAGAAACTACGTCGCAGTGGGTCACTGAATGAATCCGCGT	69	+	chr3L	225749	225818	225749..225818	CR42862-RA,	FBgn0262109,	CR42862,	1	.
CG41131-RA	CTCGGAGGGGAAGACAAGTACCTGGCGTGTTCGAAAGGGACAGTGGAGTCAGTGGTCAAAGCTGG	65	.	.	.	.	.				0	no match
CG32496-RA	GATGGTTTCGGACGCGTGAGAGGTGAGTTTTTCATCGGCCTGGAGAAAGTGCACCTTATGACGCG	65	.	.	.	.	.	CR32496-RA,CG6788-RA,	FBgn0052496,FBgn0030880,	CR32496,CG6788,	2	.
CG14063-RA	GCCATAATAAGCGTGACCAGGACGAAGAGCAGCAACCAGCAGCAAAAGCAGGAGCATAAGCACGAACAG	69	+	chr3R	24380614	24380683	24380614..24380683				0	no match
CG13400-RA	GGCCAATGCTCCGTTGTGTCTCCAACCTCAGGACATAGGCCGTGTCATCAGTCTGTGTTCCGAATTG	67	-	chr2L	8434262	8434329	8434262..8434329	CG13400-RA,	FBgn0027490,	D12,	1	.
CG12210-RB	ACGCGAATGACAACTACAATCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCAGAAGAAGC	69	-	chr2R	6138623	6138692	6138623..6138692	CG12210-RB,CG12210-RC,	FBgn0003660,	Syb,	1	.
CG2488-RB	GGAGCCTAGCACTACCGTACTAAGCCCTTACCTCAAATTTGGATGCCTTAGTGCCCGACTGTTCAATCA	69	-	chr2L	20644437	20644506	20644437..20644506	CG2488-RA,CG2488-RB,	FBgn0016054,	phr6-4,	1	.
CG8229-RA	AACACGGGAATGAACGGCTTGTTTCTAGACGCCATTAAACGCCATTCCACAGAAGCCAAACCCGC	65	-	chr2R	4837226	4837291	4837226..4837291	CG8229-RD,	FBgn0033356,	CG8229,	1	.
CG12181-RB	AAAGGCGTGTGATTCAGGCAAGAAGAACACCACCAAGAAACCGCGGAAGACTCAGCCACAAAAAGGTG	68	+	chrX	3144934	3145002	3144934..3145002	CG12181-RB,	FBgn0003374,	Sgs4,	1	.
CG10592-RA	GCCGTACCCATTATGAAGATGCAGAGCCATCCCTTTCCGACATGACAGAAGCGGCCATCAAGATGCTC	68	-	chr3L	5586573	5586641	5586573..5586641	CG10592-RA,	FBgn0035619,	CG10592,	1	.
CG7676-RA	GCCGAGAAGTACACCACTTTGAACGACTTAACCCATGTCACCAATTCCCAGAATCTTGTGGACGACATC	69	+	chr3R	14211874	14211943	14211874..14211943	CG7676-RA,	FBgn0038612,	cona,	1	.
CG10249-RB	GCCAAGGCGACCATTCAGGATCATTGGTTCACTAACTCCAGTACTGGCAAATCCGATCCCCATCAGGTT	69	-	chr2R	10790364	10790433	10790364..10790433	CG10249-RC,CG10249-RA,CG10249-RB,CG10249-RD,CG10249-RE,CG10249-RF,CG10249-RG,CG10249-RJ,	FBgn0027596,	CG10249,	1	.
CG13278-RA	GGGTCGCTGCTACACCCTTAGACCCAAGGAATCCGCGAAGAGAGTATCAAAGGCTGTTGGTTACTCCAT	69	-	chr2L	16759443	16759512	16759443..16759512	CG13278-RA,	FBgn0032602,	CG13278,	1	.
CG8293-RA	TGCACGCTGAAATGACCTTATATAGATGAGCAGCTCTAATTCGCGCTGAAAAGGGTATCAATGCACCGG	69	-	chr2R	11819818	11819887	11819818..11819887	CG8293-RA,CG8293-RB,	FBgn0015247,	Iap2,	1	.
CG7276-RA	AGCCGGCATCTGATGTCACCATCTATAACTACTACAACATGGGACCAGCATTCGGCAAGAAGTTCCCAT	69	+	chr3L	15491481	15491550	15491481..15491550	CG7276-RB,	FBgn0036499,	CG7276,	1	.
CG32428-RA	TAACCCAAAACATGTACTGTAGCTGAGAAAAGCGCACAAGAAACACATGCAACAGTTCACCGAGCGACG	69	-	chr3L	20463888	20463957	20463888..20463957	CG32428-RA,CG32428-RB,	FBgn0052428,	CG32428,	1	.
CG14671-RA	TACTGCCACCGATGAGCTTGCGCAATGCTGTTAACAAGTTCAAGGACTGCATAGAGCTGGTCGCC	65	-	chr3R	1389995	1390060	1389995..1390060	CG14671-RA,	FBgn0037340,	CG14671,	1	.
CG9981-RA	ACCTTTGGCACCATGCTCATCACCATTATCGTGATTGTGGGCAACCTGAAATTGCTGCTAGTGGCCC	67	-	chrX	16294179	16294246	16294179..16294246	CG9981-RA,	FBgn0030746,	CG9981,	1	.
CG12891-RB	CGCTTCTCGTTGACATATGAGGCTTCAATGACCCGTCTGTTCCGCGAAGGAAGAACTGAGACAGTGCGT	69	-	chr2R	6357929	6357998	6357929..6357998	CG12891-RB,CG12891-RD,CG12891-RA,CG12891-RC,	FBgn0261862,	whd,	1	.
CG12878-RA	ACAGCCCAGCTCCTAACTCAACTCATACGATTTTTTTTCCCCCATTCTGTCCTTGGGTCTGCGACTCAA	69	+	chr3R	23528795	23528864	23528795..23528864	CG12878-RB,CG12878-RA,	FBgn0045862,	btz,	1	.
CG2346-RA	ATATAACCCACTCCTCACACGAACTCCTGACTTATGCCTGAACTATGAATTTTTAATGAATGGGCTGGA	69	+	chr2R	5797759	5797828	5797759..5797828	CG2346-RA,	FBgn0000715,	Fmrf,	1	.
CG8308-RA	ACGGTCATCGATGATGTTCGGAATGGCTGCATGAGGGAGCTCTATCATCCGGAGCAACTGATTTCTGGA	69	+	chr3L	9675248	9675317	9675248..9675317	CG8308-RA,	FBgn0087040,	alphaTub67C,	1	.
CG13998-RA	TGGTCTCACCTACTGCCCACAAACTTCTACTCCGAGATGAACCAGCAGTACTACAGGAGATTCCGGCGA	69	-	chr2L	5956586	5956655	5956586..5956655	CG13998-RA,	FBgn0040949,	CG13998,	1	.
CG5030-RA	GGGTGCAGCCTGTATTAATTACCTAATGACCTCGCCTACAATGGTCCGTGGTCTCTTCCACCGGGCTAT	69	+	chr3R	16038606	16038675	16038606..16038675	CG34139-RB,CG34139-RC,CG34139-RD,	FBgn0083975,	CG34139,	1	.
CG4626-RB	CCCACTTGCAGCAGTATGGCAATGAGACGCTACTCTAGACGGAATTGGATTAGGTACCATTTCAGGGCA	69	-	chrX	7001382	7001451	7001382..7001451	CG4626-RB,CG4626-RA,	FBgn0027342,	fz4,	1	.
CG10263-RC	GTGAACAAGTGTATGTTAAGCTGAACTGAACACTATTAAAGATATTTTACGGGGTTAGGCCAACC	65	-	chr2L	19580642	19580707	19580642..19580707	CG10263-RA,CG10263-RD,CG10263-RC,	FBgn0032812,	Hakai,	1	.
CG5848-RC	ACGCCTCCGGACAGTGATTACGACAGTAGCGATATCGAAGATCTAGACGATACGAAGGTGAGCGTCACT	69	-	chr2L	16314438	16314507	16314438..16314507	CG5848-RC,	FBgn0000250,	cact,	1	.
CG5811-RA	GCGACATCCTGATGTCCTTCTTCTGCGTTCCGTCGTCCTTCATCTCGCTGTTCATCCTGAACTACTGGC	69	+	chr3R	22854191	22854260	22854191..22854260	CG5811-RA,	FBgn0004842,	NepYr,	1	.
CG15224-RA	GCGGCATCGCTCAAATGATCGAGAAATATCAAACTGGCGATTTCGGACATTGTCCACGTGTCTACTGTG	69	+	chrX	11688105	11688174	11688105..11688174	CG15224-RB,CG15224-RE,CG15224-RF,CG15224-RC,CG15224-RD,CG15224-RG,CG15224-RH,CG15224-RI,CG15224-RJ,	FBgn0000259,	CkIIbeta,	1	.
CG14795-RB	GTACAAGCTGAATCCTGAAGAGAAGTACGAGGCAGACCTGGTGCCCGTCTCCTCCACCGTGATTC	65	-	chrX	1406598	1406728	1406598..1406628,1406693..1406728	CG14795-RB,	FBgn0025393,	CG14795,	1	.
CG6294-RA	CCACGATAGCTTCTATTTTGCACGCAACTGTGCCGTAATCCTGGCCCATCATCGCTGGCTGAATTTGGA	69	+	chrX	15358095	15358164	15358095..15358164	CG6294-RA,CG6299-RB,	FBgn0030640,FBgn0030641,	CG6294,CG6299,	2	.
CG11027-RA	AATCGAATGACTAGTTTACACGTCAATTTACTGAAGTTACTGAAGACAAGCTTTTTCCTATACGAAATA	69	+	chr4	1144802	1144871	1144802..1144871	CG11027-RA,	FBgn0013749,	Arf102F,	1	.
CG7920-RB	CGACGTGCGTGCCTACAACAGAGTACTCAGTACACACTACTACACTACACAGTCCACCATGAGCAAACA	69	-	chr3R	25840706	25840775	25840706..25840775	CG7920-RA,	FBgn0039737,	CG7920,	1	.
CG15728-RA	CACCCAGGTGAAAAGAACTCTTTTCCTGCAAAAGTGCTTCAATTATATGGCATGCTCCGAGGAAAGCCA	69	+	chrX	12521575	12521644	12521575..12521644	CG15728-RA,CG15728-RB,	FBgn0030409,	CG15728,	1	.
CG7162-RA	GCCGCAAGCATGGAAGGCTTCATCAAGGGGCTCCACAACAAATTCCAGATCCCAAAGTTATCGCAGAGA	69	-	chr3L	21622059	21622128	21622059..21622128	CG7162-RA,	FBgn0037109,	MED1,	1	.
CG10287-RA	TGGCTTTCGATGCCACAGACTCCAAGTACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGCG	69	-	chr3R	1920550	1920619	1920550..1920619	CG10287-RA,CG10287-RB,	FBgn0026077,	Gasp,	1	.
CG17058-RB	GCGTAACCGTTAAAACGTACAATCTTGGAGCGGAAGTTTCAAGTTTCTCCATTCCACTTTTTGCGCGCA	69	+	chrX	20115741	20115810	20115741..20115810	CG17058-RA,CG17058-RB,	FBgn0022770,	Peritrophin-A,	1	.
CG31801-RA	TGCCGGAGCAAGAAGATCCATCAATGTGCCGAGATGAGTTTCTCAAGGATCTGATAAGGGAGCACGAGT	69	-	chr2L	18676766	18676835	18676766..18676835	CG31801-RC,	FBgn0086681,	Mst36Fa,	1	.
CG5949-RA	CGAAAGGGATCCCGATGGTGCAGTTGCCTATGTGAAACAGGTGATAGCCGATCTCCTCTGCAATCGCAT	69	-	chr3L	15978173	15978242	15978173..15978242	CG5949-RA,	FBgn0012066,	DNApol-delta,	1	.
CG15930-RA	TTTGTGCCCACCATCAACGATCTAATCGAGTCGCGGATCAAGTTGGAGTCCTGTTGCTATGCGCC	65	-	chrX	5209590	5209655	5209590..5209655	CG15930-RB,	FBgn0029754,	CG15930,	1	.
CG16928-RA	CGCTCATTCGGTTGCGTCTCCTCTACACAGATGAGTCCTGCATGTTTAATGCGATTCGGTTTGGAGAGA	69	+	chr2L	11283351	11283420	11283351..11283420	CG16928-RA,	FBgn0020270,	mre11,	1	.
CG4903-RA	GCCGCCCACTCCTATACTGTCGCATCCAGAATCTTCTCTGTTTCCTGTAACGCCACTTACTCATCGCCA	69	+	chr2R	13442156	13442225	13442156..13442225	CG4903-RA,CG4903-RB,	FBgn0034240,	MESR4,	1	.
CG3862-RA	TCCGGCCAACCTTGACGTGATCATTTATCCTACAGCCATTAAACTGCCGAGAGTTCAGGGAGAAACAGA	69	-	chr2L	825336	825405	825336..825405	CG3862-RA,	FBgn0031286,	CG3862,	1	.
CG33142-RB	TCCTTTGGTTCTGGCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTTGCCCTACTGCTGCA	69	-	chr2R	12885376	12885445	12885376..12885445	CG30461-RE,CG9002-RA,CG9002-RB,	FBgn0050461,FBgn0050462,	CG30461,ste24c,	2	.
CG11949-RA	ACGCGATGGCATTGTGGAGACCCGAGTGGAACAGAAGATAACCATTCAGTCCGATGGAGATCCGATCGA	69	+	chr2R	15130584	15130653	15130584..15130653	CG11949-RB,CG11949-RA,CG11949-RC,CG11949-RE,	FBgn0010434,	cora,	1	.
CG11778-RA	TGCTCGGAATCGTCTCGAATATCATCGCCTTCCTAGCCATTGTGTTCTTCCTAGACGCTGTAACGGAGT	69	+	chr2R	4971596	4971665	4971596..4971665	CG11778-RB,	FBgn0033371,	CG11778,	1	.
CG15332-RB	GCCGGGTGTACTTCCACGTGATTGCTATCCCGTTGATCTGATTAGGACGGAACATGAGGGCCCAATG	67	-	chrX	7849269	7849336	7849269..7849336	CG15332-RA,CG15332-RB,	FBgn0029986,	CG15332,	1	.
CG11575-RA	CTTTTCGCTGTTCACATGGACGTGTGGTTATGCTTTCTGCTAGTGGGTCTGCTAGGAGCCCTAGTCTGG	69	+	chr3R	27627575	27627644	27627575..27627644	CG11575-RA,	FBgn0039879,	Ir100a,	1	.
CG7227-RA	GAGCTTGGTCCGTATCGCTTCACCGAACGGATGCAGAAGGTCAATGTGGAGTGGCACGATGAGAAC	66	-	chr2L	7996434	7996500	7996434..7996500	CG7227-RA,CG7227-RB,	FBgn0031970,	CG7227,	1	.
CG11901-RA	CGCCTCCTGCATTTTGTACTGGAGAATTTGTTTGTAACCGCCTAAGCATAACACAGCATGATATTGTCA	69	+	chr3R	25047703	25047772	25047703..25047772	CG11901-RB,CG11901-RA,CG11901-RC,	FBgn0029176,	Ef1gamma,	1	.
CG3884-RB	AATGGAGAGCTGCTGTACTATGGGCGAGGACACTACCAGGGCAGTTTGACACCGGGTCTGATCTC	65	-	chr2R	8838079	8838144	8838079..8838144	CG3884-RB,CG3884-RC,	FBgn0033786,	CG3884,	1	.
CG2128-RA	CGACGTGCGAATATCCGTAGCCGATGAGGACAAGCTGGTTGATGCTAAGAACGAGTTCTACGACGGCGA	69	-	chr3R	1298634	1298703	1298634..1298703	CG2128-RA,	FBgn0025825,	Hdac3,	1	.
CG14895-RB	TCAAGAGCTGGGATAAGCTGAGTCCCAACCTTCAAGACTTTCTCGATCGCTGTCTCCAGGTGGAGGT	67	-	chr3R	12277043	12277110	12277043..12277110	CG14895-RA,CG14895-RC,	FBgn0044826,	Pak3,	1	.
CG15800-RA	CGGTTACGTGGAGAAGATCCCAAGATTCCAGGATCATTTCATTGAGCAAATTCAAAAGGAATAGG	65	-	chr2R	19678240	19678305	19678240..19678305	CG15800-RA,	FBgn0034904,	CG15800,	1	.
CG11750-RA	GTAGATCAGTCAACTTCCGTACATACAACTAATACGAAATGAATCAGCACAGTTGCCCTACTAAACAAT	69	+	chrX	11254686	11254755	11254686..11254755	CG11750-RA,	FBgn0030294,	CG11750,	1	.
CG11886-RA	TAATTTTTATTTCAAGTACAAAGTTAAAACTATGAATCAAACACGCATCTTCGAGTCACAAGGCC	65	-	chr3R	24977847	24977912	24977847..24977912	CG11886-RA,	FBgn0041186,	Slbp,	1	.
CG31622-RB	ACCCACGATGAAATCCTACTGTTGGGTCAAAGAGAACTGATTGCCGTTTATGGTGGAGTTATACTATTT	69	+	chr2L	21291384	21291453	21291384..21291453	CG31622-RB,	FBgn0041244,	Gr39a,	1	.
CG30156-RA	CTGTGCCTGGGACACTACGAGCACGCTCTGAGGCAGATCAACGAGGATCTGGAAGGCTTACAGAA	65	-	chr2R	2870094	2870159	2870094..2870159	CG30156-RA,	FBgn0050156,	CG30156,	1	.
CG17325-RA	GCGTGCCCTGAATCCCCCTGTGGTCCAAGCTCACCCAAGCTCCTGTTGAAACTTGAAAGAAATCATTGA	69	+	chr2L	18813389	18813458	18813389..18813458	CG42305-RA,CG42305-RB,CG17325-RA,CG17325-RB,	FBgn0259201,FBgn0040993,	CG42305,CG17325,	2	.
CG6497-RA	ATAGCCCGTCTCGATCGCATACAGTCGAAGATCTCAGCGAAGCGTAAGAGCCTCACCTTCCAGCAC	66	-	chr3L	17246512	17246578	17246512..17246578	CG6497-RA,	FBgn0036704,	CG6497,	1	.
CG17304-RA	ACGAGCGCAAAATGATCATCGAGGTGCTCAACAGAGACGAGTCGGTGAGGCAGAGAGATGCCACTAGAA	69	-	chr3R	10685034	10685103	10685034..10685103	CG17304-RA,	FBgn0038267,	CG17304,	1	.
CG1530-RA	CGCGTCAGGTGATGAAGGACCACTGCTACTGGCCACTAGTCTCGGACTTTAACAACGTCCTTTCACACG	69	+	chrX	7834851	7834920	7834851..7834920	CG42593-RA,	FBgn0260970,	CG42593,	1	.
CG10449-RA	TGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTCCTTGGAGGAATCATTGCCTTCCTTTCAGTGGA	69	+	chr2L	19042647	19042716	19042647..19042716	CG10449-RA,	FBgn0002022,	Catsup,	1	.
CG9076-RA	TGCCGGTGCCAATCCTCAAATCGGTGACCGAACAACTTAGCTCGGGTTCCTACCTATTTTCGTTCGAGT	69	-	chr2R	7149056	7149125	7149056..7149125	CG9076-RA,	FBgn0033601,	Cpr47Ed,	1	.
CG3160-RA	CCTTTCCCAGGCAACCTCCAATGTGATGATCTCGATCATGACCCACTTGCCCATTACGTACGGTATACT	69	-	chrX	5580706	5580775	5580706..5580775	CG3160-RA,	FBgn0029789,	CG3160,	1	.
CG15778-RA	TGGCCAGATATCAGAGTAGCCTTAGCCTCGGAATCCTTGTGGTCCTGCTAATCGATCAGCTGGCCAA	67	+	chrX	5577294	5577361	5577294..5577361	CG42449-RA,CG42449-RB,	FBgn0259926,	CG42449,	1	.
CG11893-RA	TGCATGGCTGAATGCCCAGTTTATTACTGACGTTCTTAGAACCTACGAAAAGTGTCCGGAACTGGAGGT	69	+	chr3R	21115701	21115770	21115701..21115770	CG11893-RA,	FBgn0039316,	CG11893,	1	.
CG31501-RA	TGCTACACCTAGAAATAACTCCAGTGAAGGTCCTTTGTGCCACTCCACACCAAGATCCGTGAAAGGCGA	69	+	chr3R	3172559	3172628	3172559..3172628	CG31501-RA,	FBgn0051501,	nxf4,	1	.
CG32195-RA	TCGAGAGAGCTTTGGCGAGAGCTTATGGTTGTGAAATGCTTCGCGTTGAGAACTTTCACATCAAGGCGG	69	+	chr3L	18107556	18107625	18107556..18107625	CG32195-RA,	FBgn0052195,	CG32195,	1	.
CG7397-RA	CGCCACAGAGCTATACCCAGCAGCTAAGAGATTACCGCAAGAGCATCTCACCCAGTTTCCAAAGTGCCT	69	-	chr3R	13597411	13597480	13597411..13597480	CG43102-RA,CG43102-RB,CG43102-RC,CG43102-RD,CG43102-RE,	FBgn0262562,	CG43102,	1	.
CG10497-RA	GGCCAACAATTCGTATGCGAAAAATGCGAATAACCGCGAGTTCTACGCCTGAGATAATGGCACGTCGCG	69	-	chr2R	17282050	17282119	17282050..17282119	CG10497-RA,CG10497-RB,CG10497-RC,CG10497-RD,CG10497-RE,CG10497-RF,CG10497-RG,	FBgn0010415,	Sdc,	1	.
CG6000-RA	AGCCAGGCTCCTCAAATTGGAATCGTGGACTACGACGTGGTCAAGAAACTACCCAGCGAACCACAGAAA	69	+	chr3R	19880318	19880387	19880318..19880387	CG6000-RA,	FBgn0039145,	CG6000,	1	.
CG15376-RA	CACTTCGACTCGTATATTTCCAAACTGCAGTCGCTATGCGTGCCCCCCGATGTTTATGCCCTGCC	65	+	chrX	3984609	3984674	3984609..3984674	CG15376-RA,	FBgn0029692,	CG15376,	1	.
CG7321-RA	TGGCGCAGATAATGCTCGACGATCTGAATCTGTCGAATATCGTGATCGGCTGGTACAAGCTCTTTGGCA	69	-	chr3R	13702799	13702868	13702799..13702868	CG33547-RB,CG33547-RP,CG33547-RC,CG33547-RD,CG33547-RF,CG33547-RG,CG33547-RH,CG33547-RJ,CG33547-RK,CG33547-RL,CG33547-RM,CG33547-RN,CG33547-RO,	FBgn0053547,	Rim,	1	.
CG4094-RA	GTGAAAGATCACTTGCTTGCAAACTTATTTATTAATTACCGACTAAGGAATAAGCATAGAGATGGTGCT	69	+	chrX	6572501	6572570	6572501..6572570	CG4094-RA,	FBgn0028336,	l(1)G0255,	1	.
CG7118-RA	CGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCCGAGTGCGCCAGCTACTACGGAAC	66	+	chr3L	8385148	8385214	8385148..8385214	CG7118-RA,	FBgn0035886,	Jon66Ci,	1	.
CG15725-RA	CAGTTGCGATGGACCGGTTCGTTTTCGAAGGATTCTCAACACAGCCTACGGTCACAAGCCAGAGG	65	+	chrX	12601654	12601719	12601654..12601719	CG15725-RA,	FBgn0030417,	CG15725,	1	.
CG14704-RA	GGCAGGGGATTCAATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTGTG	66	-	chr3R	7279192	7279258	7279192..7279258	CG14704-RC,CG14704-RB,CG14704-RA,CG14704-RD,CG14704-RE,CG14704-RF,	FBgn0037906,	PGRP-LB,	1	.
CG12153-RA	TGTACCACGGAATTAGGGGGACACTGCCTAGGGACATGGACCAAATGCAACAGAAGTTTCCGCTC	65	+	chrX	7618687	7618752	7618687..7618752	CG12153-RA,	FBgn0022786,	Hira,	1	.
CG2144-RA	GCCTGTCCACCATTGACCTAACGCCTGGTTATATCGGACAGACAAACTACAACCCGTCGATCGTTGCCA	69	+	chr2R	3409611	3409680	3409611..3409680	CG2144-RA,	FBgn0033187,	CG2144,	1	.
CG15888-RA	CCGGATGGGTCGTTCCCGAAGACGTGAGACCGAAGAAATGGACCTGCCCCTTATTAATATTCCGTCCAT	69	-	chr3R	9111136	9111205	9111136..9111205	CG15888-RB,	FBgn0038131,	CG15888,	1	.
CG14016-RA	GCTGGCAAACCACCGATGGCTAGTAGTCACATTAACCCCATACCCATCTCACGACCCATAGCGACT	66	-	chr2L	5536208	5536274	5536208..5536274	CG14016-RA,CG31989-RA	FBgn0031715,FBgn0051989	tomb,Cap-D3	2	.
CG9273-RA	AAGGCGGTTCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGATCCCAACGAGGTGTGC	65	-	chr2L	20925526	20925591	20925526..20925591	CG9273-RA,	FBgn0032906,	RPA2,	1	.
CG5284-RA	GGCACCGATCACAGTTACAGATCAAACGCCAATGGAGACGGTAGTGGACATGTTCCGAAAGCTGGGAC	68	+	chr3L	16088046	16088114	16088046..16088114	CG5284-RB,CG5284-RC,	FBgn0036566,	ClC-c,	1	.
CG31651-RA	CATAACCTGACTACGAGCGAAATTCCACAGATGATCATTGAAAGCAGCAAACCGATAAGACGCAGGCCA	69	-	chr2L	5072670	5072739	5072670..5072739	CG31651-RB,CG31651-RA,	FBgn0031681,	pgant5,	1	.
CG10540-RA	AGGAGCACTCATTCAAGTTTTTCGCTTTCCCGATTGTTCACAAACCAACCACCTAGTATGAGCATGAAT	69	+	chr2R	16947148	16947217	16947148..16947217	CG10540-RA,	FBgn0034577,	cpa,	1	.
CG8730-RA	GCGCCCTGTACGTGGACAAGGGTCTCCTGTATTGTGAACAGTTTTGCCATGTATGTTTGTTCCCGCGAC	69	+	chr2R	3823349	3823418	3823349..3823418	CG8730-RA,	FBgn0026722,	drosha,	1	.
CG1317-RB	GGAGAAGGACACCAGAATGTTGAAGCCGTTGAAGTATTCGTCGTGCTTTTTCGTCGTGGAGATGCTTCT	69	-	chr3L	2368335	2368404	2368335..2368404	CG1317-RB,CG1317-RC,	FBgn0035333,	CG1317,	1	.
CG13160-RA	TGACTGGTCGCTTTGGCGTCTCCACCAATCCGGATATACTAATCGGCGCTCTATGTGGTTTTGGCACAA	69	+	chr2R	8261485	8261554	8261485..8261554	CG13160-RA,	FBgn0033720,	CG13160,	1	.
CG8793-RA	GCCCGCCATGAATGTAAGCTTTACTCCCGTTCCCAATCGACTGTTGGCTGGTGAAATTGTTCCCGTTCA	69	-	chr3L	19608228	19608297	19608228..19608297	CG8793-RA,	FBgn0260655,	l(3)76BDm,	1	.
CG1155-RA	ACACCACGCACACATCACCCGCAAGTCAAGTCGAATGTATGAATAAAACCAAGAGTATTGCACCCGAAA	69	+	chr3R	2126394	2126463	2126394..2126463	CG1155-RA,	FBgn0040279,	Osi14,	1	.
CG2110-RA	TTATTAGGGAGACCCTGCGCTTGTACCCTTCTGTCCCACTGATTGCTCGAACAAACCGCAATCCC	65	-	chr2R	4327506	4327571	4327506..4327571	CG2110-RA,	FBgn0033292,	Cyp4ad1,	1	.
CG9676-RA	GCTTTTCAGTTAGCTAAGCCCAACCAGTCATGTTACCATTCTGGACATCTCTACTCGTCCTTTGCGCAG	69	-	chrX	16594131	16594200	16594131..16594200	CG9676-RA,	FBgn0030773,	CG9676,	1	.
CG31110-RA	GCTGCATGCGAAAATTTCCCCTCCGTTTATTGTAAGACGCGCAGAAGAGCCCTAGTTCATACCATTGAA	69	-	chr3R	20869604	20869673	20869604..20869673	CG42283-RB,CG42283-RC,CG42283-RF,	FBgn0259178,	5PtaseI,	1	.
CG13098-RA	TGGCGGGAAATGGAGAAACGCATCCTCTACTTGTACAAGTTCCTCAACCGCAAGACGAAGACGGGCTAT	69	-	chr2L	8516779	8516848	8516779..8516848	CG13098-RA,	FBgn0032053,	mRpL51,	1	.
CG3345-RA	GTCAAGCAGACAGGGCAAGGAAAATTGATCTTAAAGCAGGATGCCTTAGCTCTGGCGGGAAGTAGCCCT	69	+	chr2L	271320	271389	271320..271389	CG3345-RA,	FBgn0031240,	CG3345,	1	.
CG9704-RA	CAGCCGGAAGAGGACTACTTGCCCTGCAACTACTGGATCAGCAAGGATATTGTGCCGCGGTATGC	65	+	chr3L	16769382	16769447	16769382..16769447	CG9704-RB,CG9704-RA,CG9704-RC,	FBgn0004108,	Nrt,	1	.
CG9738-RA	GCCATTCCTGCCCAAAAATATTCACAGCCAAACAATTGCACCGTCTATGTCCCCGTCTCAAAAAAGAAA	69	-	chr3R	4473295	4473364	4473295..4473364				0	no match
CG17168-RA	CCCACGCTCCATATTCATCGGCAGAGTTGCTTTCTGGTTGGACGCGATCGAAAAGTGGTCGATCTGG	67	+	chrXHet	62860	62927	62860..62927	CG17168-RA,	FBgn0039943,	CG17168,	1	.
CG32092-RB	GGAGAATCCCTCCTACGAAGGACGCAACAGCTCATTGTGCACTTGGAAAATATCCGTACCAGCTGGCG	68	-	chr3L	11795477	11795545	11795477..11795545	CG32092-RB,	FBgn0259140,	CG42255,	1	.
CG40265-RA	ATTGCAACAGCGCGTTCTTAAGGGCGGAAGAGCTGGGGACTGTCATCGTTGGAATCGAACTGAAC	65	+	chrU	402021	402086	402021..402086				0	no match
CG10390-RA	TGGGCATACATCAACCCCCTGATCTGCCGGAAGAGTTTATGGAGAGATATGGATCTTTGGGCACGCTGA	69	-	chr3R	1374602	1374671	1374602..1374671	CG10390-RA,CG10390-RB,	FBgn0014342,	mia,	1	.
CG14120-RA	TGGCGGAAACTGGGAACGAATCGAGGACAGTGTGAGAAAGTTTGTGGCGGATGAAAACATCACAGTGGA	69	+	chr3L	12881822	12881891	12881822..12881891	CG14120-RA,	FBgn0036321,	CG14120,	1	.
CG13110-RA	CAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGGGTAGACGGGACTGCGATCACATT	69	+	chr2L	9350835	9350904	9350835..9350904	CG13110-RA,	FBgn0032111,	CG13110,	1	.
CG15554-RA	CCGGGGTCCGTGACTAAGACTTCCGACCTTATCGCATCCAATAAATCCAAAACTAAGACTCAGCCA	66	+	chr3R	26952992	26953058	26952992..26953058	CG15554-RA,	FBgn0039820,	CG15554,	1	.
CG3318-RA	TGGTCCCAAATCGCGAGAAGAATTCCACCTCCCTAGCATTCGAGTACATATAAGATTCTCAAGCCTGCA	69	+	chr2R	20027149	20027218	20027149..20027218	CG3318-RA,	FBgn0019643,	Dat,	1	.
CG9784-RA	GCAGCTATCCATTGAGCAATGCTCGTATAAGTCCCATCCCCTGTACACCATCAGTGATCACAAGCCGGT	69	-	chrX	16491271	16491340	16491271..16491340	CG9784-RA,	FBgn0030761,	CG9784,	1	.
CG6117-RA	CCTTTGGACGAGTTTGCTTATGTCGCGATCGCATTTCGGAGAAGTACTGTGCCATGAAGATTCTGGCCA	69	-	chr3L	15921950	15922019	15921950..15922019	CG6117-RB,CG6117-RA,	FBgn0000489,	Pka-C3,	1	.
CG2040-RC	CCCGCTCACAGATCAACCCAATTAATGACTCTTGTGTTGTATTTCCGCCGAACAAACGACCGATTTCGA	69	-	chr2R	5116400	5116469	5116400..5116469	CG2040-RC,CG2040-RD,	FBgn0010114,	hig,	1	.
CG33265-RA	AGGAGAAGGTTTGCGGACCTGGAGTGGATTTCCTTGCACATCCAACGGACTGCACCATGTATTTGCAG	68	-	chr3L	11960958	11961026	11960958..11961026	CG33265-RA,	FBgn0053265,	Muc68E,	1	.
CG4120-RA	GCGGCTGTACAAAAAGCAGTTCGGCGACATATGCTTGATACCCGGATTATTCGGCATGCCATCCACTGT	69	-	chr3L	18679112	18679181	18679112..18679181	CG4120-RA,	FBgn0036806,	Cyp12c1,	1	.
CG10560-RA	ACTGCCGAAGTGGGGATCAGTTGCGCAGGATTTGTATTATTTCTTGCTTTCATCGACCAGCCTGGACAT	69	-	chr3R	21144733	21144802	21144733..21144802	CG10560-RA,	FBgn0039325,	CG10560,	1	.
CG3367-RA	TGGTGCGATTCTGTTTCACAAATTGCAGAACTGGAGTGTCCTGGAATCGCTCTACTTTTGCTTCACCTC	69	-	chrX	6362000	6362069	6362000..6362069	CG42340-RC,	FBgn0259242,	CG42340,	1	.
CG12012-RA	CCACCGAGATCATCGTGATTGGAGGATGCCCTGCATGTCGGATTGGATACCTGGAGGACACCTTC	65	+	chr3L	3377130	3377195	3377130..3377195	CG12012-RA,CG12012-RB,	FBgn0035444,	CG12012,	1	.
CG7454-RA	CCGGGGTCTACACCATAGCCATTCTATCCCAGACCTTTCCATTTTGCTATGTCTGTGAGCAGCTGAGCA	69	+	chr3R	4148417	4148486	4148417..4148486	CG7454-RA,	FBgn0037576,	Or85a,	1	.
CG33181-RA	GTGCAGGCCAGCAAGATATCCACAATGCTGCACCAGAGCTCAATTATCGGGATTATACCACCGCACACG	69	+	chrX	8409318	8409387	8409318..8409387	CG32714-RC,CG33181-RA,CG32714-RE,CG32714-RF,CG32714-RG,	FBgn0053181,	CG33181,	1	.
CG11509-RA	ACGTGGATTCTGGTGTTCCAAGATGTTCCATTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAA	69	+	chrX	1546569	1546638	1546569..1546638	CG11509-RA,	FBgn0029584,	CG11509,	1	.
CG40120-RA	TAGGAGCGATGGATCGTATATTTCCACACGTCGTCAACCACGCACAGATTTACGTAGCGCGGCTG	65	+	chr3LHet	1891102	1891167	1891102..1891167				0	no match
CG11409-RB	TCCCCCACCAAGATTAGTCTGAGTCTGGGCTTAGACGACATCGATGGAGACACCAAAGGAGCAGTTGGA	69	-	chrX	1224084	1224153	1224084..1224153	CG11409-RB,	FBgn0024366,	CG11409,	1	.
CG6264-RA	TCCATGAGAGCCAATGATCCACGTCCCAATGTCATGGACATATTCGCACAAACCTCGTCGGGAGC	65	-	chr3R	5989186	5989251	5989186..5989251	CG6264-RA,CG6264-RB,CG6264-RC,	FBgn0040238,	Best1,	1	.
CG15818-RA	AGCCCAGCAAGCATTCCTTGTGAACAACATTTCGAAGGCAATCAAAACCGAGGACCTTGAGCAAAAACT	69	+	chr2L	7411229	7411298	7411229..7411298	CG15818-RA,	FBgn0031910,	CG15818,	1	.
CG1428-RA	GCACTGCCTACGGTGAGGATAACGCCAAAGGTATCCTCTCCAATAGGAACGGGGATAAAGAGCTTCCCA	69	+	chr2L	21907136	21907205	21907136..21907205	CG1428-RA,	FBgn0032967,	CG1428,	1	.
CG11793-RA	TTTCGTTTTGATAAATTGATTAATTCATTCGAAATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCGAT	69	-	chr3L	11106703	11106772	11106703..11106772	CG11793-RA,	FBgn0003462,	Sod,	1	.
CG9952-RA	AACGACATTTACTTAACATGACTCTTCATAGCCAGAACTAGCTATTTTCCCGCTAAGACCGGTCAGCTC	69	-	chr2R	18573897	18573966	18573897..18573966	CG9952-RA,	FBgn0020257,	ppa,	1	.
CG14326-RA	GGGAACTGGAGCTCAGCCTACTGGTGGGCAAGTAGACAATCGTATCCTTGGAAATCTCCTCGGTGG	66	+	chr3R	13445011	13445077	13445011..13445077	CG14326-RA,	FBgn0038528,	CG14326,	1	.
CG31680-RA	AATCAGGAAGCTGAACTTGAAAGTGCCTACAAGTCCTCCAATGAAAGAAAACAACAGGTTCTCTACCAA	69	+	chr2L	20640523	20640592	20640523..20640592	CG31680-RA,	FBgn0051680,	CG31680,	1	.
CG3321-RB	AGCCACCATCTATCGATCACTGACTATCGTTTTTGTGTTTTCCTCTGATGCTTGTGCAAAAAACAGAAT	69	+	chr3R	10153365	10153434	10153365..10153434	CG3321-RA,CG3321-RB,CG3321-RC,	FBgn0038224,	CG3321,	1	.
CG32105-RB	ACATGCTGGCCAACCTGAACAACAGCCTGATAAACCCCATCGACAAGCTGTATCTCATGCAGAACTCGT	69	+	chr3L	12328430	12328499	12328430..12328499	CG32105-RB,	FBgn0052105,	CG32105,	1	.
CG30273-RA	GTCAGGTGTCCACAGACCGACAGCTGTACGATGAAATTTCCCCAATGGGGTAAACAATCGGGCCG	65	+	chr2R	18555308	18555373	18555308..18555373	CG30273-RA,	FBgn0050273,	CG30273,	1	.
CG15325-RA	ACTTTCCCTCCAAGTTGCATAACCTCAACGGGTGCCCTTTGATTGTTTTGGCTAGGAAAGTGTCGCCCT	69	+	chrX	7779729	7779798	7779729..7779798	CG15325-RA,	FBgn0029968,	Ir7g,	1	.
CG3445-RA	GCTGCTGGATGGCACGTCCCTAACATCCTAACTAGTAGTGCGCTTTAATGTGTGGCAGGTATTGGCATG	69	-	chr3L	9446591	9446660	9446591..9446660	CG3445-RA,	FBgn0035997,	phol,	1	.
CG33489-RA	GCCCATCCGTCGGAGGAAATTCGTCATCAGTTAGAATTGGAGTGCAGAAGAAACAAGCCTCAACCCTTC	69	-	chr3L	11569775	11569844	11569775..11569844	CG33489-RA,	FBgn0053489,	CG33489,	1	.
CG31475-RA	GCCAACCCCATCCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGAAACAGTTA	69	+	chr3R	15016174	15016243	15016174..15016243	CG31475-RA,	FBgn0051475,	CG31475,	1	.
CG13221-RA	GGAGCACACTCCTAGTTGTTAGTTAAGAGGGCGGGTAATCATCTTAGGGACTGAGAGACAGGCTTGATT	69	+	chr2R	7167918	7167987	7167918..7167987	CG13221-RA,	FBgn0041174,	Vhl,	1	.
CG33208-RF	ACGCTAACGAGACACGAGAGCATAAGAAGCAACGTGCCATATCGAAGGCTTCACGACAAGCTGAGCTCA	69	-	chr3R	5828895	5828964	5828895..5828964	CG33208-RC,CG33208-RH,CG33208-RG,CG33208-RD,CG33208-RB,CG33208-RE,CG33208-RF,CG33208-RJ,CG33208-RK,CG33208-RL,CG33208-RM,	FBgn0053208,	Mical,	1	.
CG5656-RA	TAGGGTGGTGTTTAGTCGTACGGATCTCCTGAACAATGATGCGCAGAACACTGACTTCCTGCTGGGGC	68	-	chr3L	21436274	21436342	21436274..21436342	CG5656-RA,	FBgn0037083,	CG5656,	1	.
CG15478-RA	GGATGGCGAGAGCAGTCGATGTTCCAGCAATGACGAGGCTTCCATCACGCAAATCGATTGAGGCTAC	67	-	chrX	7606851	7606918	7606851..7606918	CG15478-RA,CG15478-RB,	FBgn0029955,	CG15478,	1	.
CG8779-RA	CACCCCCGTTCTTCATCAAGAACTTGCCACCGTACACGGGCATTTTGCATTCTTCACCAAATGCAACTT	69	+	chr3L	23008438	23008507	23008438..23008507	CG43079-RA,CG43079-RB,CG43079-RD,CG43079-RE,CG43079-RF,CG43079-RG,CG43079-RH,	FBgn0262509,	nrm,	1	.
CG6136-RA	GACGTGGACCCCTACTACGGAACCAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCG	66	-	chr3R	11196758	11196824	11196758..11196824	CG6136-RB,CG6136-RC,	FBgn0038332,	CG6136,	1	.
CG11367-RA	AGCCCAAACCATCAATGTTTACTTGGGTTCCACGCTAAGGTCCATGCATGAAGTGCTCAGTGATAACGA	69	+	chr3L	22725736	22725805	22725736..22725805	CG11367-RA,	FBgn0037185,	CG11367,	1	.
CG32579-RA	CGCGACACTGGCTTGCTTTTACGGCACCATTGTGTTCTTTGTGGACTCGCCAATGATCGCAAAATCCC	68	+	chrX	16218773	16218841	16218773..16218841	CG32579-RA,	FBgn0052579,	CG32579,	1	.
CG40268-RA	AGCGGTGAAAATGTGTTTGCTATAATTTCGGTATATGAATTCGTTCTTCATGGTGTGGATCAACAAGTC	69	.	.	.	.	.				0	no match
CG1429-RF	ACGCACTGTACAGTTGACTGTCTAAAGGACGTCCTACGGTCACAGGGACCACTCACAGCACGGAAGTAA	69	-	chr2R	5801632	5801701	5801632..5801701	CG1429-RF,CG1429-RC,	FBgn0011656,	Mef2,	1	.
CG11352-RC	GTCCACACTTTTGCACACACAAGGCAGACAAAAGAAATCAGCTGGAACATCTTGTTTATCAAGCAGGCA	69	-	chr3L	22789585	22789654	22789585..22789654	CG11352-RC,CG11352-RD,CG11352-RE,	FBgn0027339,	jim,	1	.
CG4017-RA	GCCCAAACGAGTCTATCGCTGGACATAGAGCCCATTGCGGATGCTAATCGGCGAAGTGATGACTACTCA	69	+	chr2L	9767347	9767416	9767347..9767416	CG4017-RA,	FBgn0032143,	CG4017,	1	.
CG30431-RA	TTCCCTCGTACTGGGAATCGTCGGTAGATTCGGGAAGCCTAAACACTCCGCATCATCAGCCGGAG	65	+	chr2R	2091565	2091630	2091565..2091630	CG30431-RA,	FBgn0050431,	CG30431,	1	.
CG40500-RA	ATCCTTGACAAAATATCAGCAGGTTATCGGGCAAATTTAATTAACATATTGCGAGAAAAGTCACCGCGT	69	+	chrX	22294265	22294334	22294265..22294334				0	no match
CG13067-RA	CCGCCTACCCCTATGCCGCCTACTACCGTTAAGACTGGATGAATGGATCGTGATCTTAACCTGACTGCT	69	+	chr3L	16264720	16264789	16264720..16264789	CG13067-RA,	FBgn0036589,	CG13067,	1	.
CG31082-RA	GGAGGCCATCTACAGCAACACCTCCTTCTTTGATTCGCGTCGAAGTAGTGACACTTCGGTATCCTGTCG	69	+	chr3R	22412222	22412291	22412222..22412291	CG43398-RN,	FBgn0263289,	scrib,	1	.
CG1600-RC	ACACGAAATTGTTACGCATGCGATGCAAATGTTTGATTCAATTGCTTGATGTTTGTACTCATTACGTAC	69	-	chr2R	3413670	3413739	3413670..3413739	CG1600-RA,CG1600-RC,CG1600-RB,	FBgn0033188,	CG1600,	1	.
CG40196-RB	AGAGCCGTCATTGCAGTGGGTTATGAACTCAATCCATGCAAATTTATCGGCATTAGCGGGAGATCAGTA	69	+	chrU	3449499	3449568	3449499..3449568	CR41604-RB,CR41604-RA,CR41604-RD,CR41604-RC,	FBgn0085814,	CR41604,	1	.
CG15483-RA	CCAACCTGGAGGAGTGGATAAATGCGAGCGTTGTCTCCAAGGAACTGAATGTCTTCAATGTTGGCCACC	69	-	chr2L	12760760	12760829	12760760..12760829	CG15483-RA,	FBgn0032457,	CG15483,	1	.
CG7347-RA	TGCACCTTCTGTCCCTTGTCTTTCACGAGTATTACCTCACCTGTCTGTTTCGCGACTCCGAGGAGACGA	69	+	chr3L	18105339	18105408	18105339..18105408	CG7347-RA,	FBgn0002901,	mus304,	1	.
CG40336-RA	ACGGAGTCAACAGATAAGGCTACTGAGGAAGTTCGAAAACAAGTGGAGAGAGAAGAGCCCCAGAC	65	-	chr3LHet	2536477	2536542	2536477..2536542				0	no match
CG2723-RA	CTCGCTGGTTGCTGGGAAGAGTCGCTTCAGTTGAGTGCCTCCATTCCCCCAGAGTAAACCGTTCC	65	-	chr3R	3855231	3855296	3855231..3855296	CG2723-RA,	FBgn0001255,	ImpE3,	1	.
CG31068-RA	GCGGTGGGAAAGCAGGTCACATCCCTCAAACTTCTTTCCGATGATTCGTCTCCTAGCCGAGTTCCCTAC	69	+	chr3R	23061355	23061424	23061355..23061424	CG31068-RB,CG31068-RC,	FBgn0051068,	CG31068,	1	.
CG11665-RA	CCAGAGGGGCGATCAAGCTCCAACAAACTGACTCTGCGAAATTCGTCAAAGTCACGGTTATCCAAGCGC	69	-	chr2R	1530364	1530433	1530364..1530433	CG11665-RA,	FBgn0033028,	CG11665,	1	.
CG4542-RA	CGCTGCTCTTCGATGCGGATCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCATGATG	68	+	chrX	6716481	6716549	6716481..6716549	CG4542-RA,	FBgn0029906,	CG4542,	1	.
CG9114-RA	TCTCATTACCTTCGATGTGAAGAAACTGCTCGATAAAACAGAATCGTTGGCACCCACATTTTCGCCCGC	69	-	chrX	15225740	15225809	15225740..15225809	CG9114-RA,	FBgn0030628,	CG9114,	1	.
CG6358-RA	GCCCCCATCTTAAGTTCCTTACTCTGTAAACTCATGTTACATTAAAAACATAGTTTAGTGAATTC	65	-	chrX	3997046	3997111	3997046..3997111	CG6358-RA,	FBgn0004832,	Xpac,	1	.
CG40477-RA	ACAGGGCGACTGGACAGTCCCACAAACCAACTCCACCAATAACCCAAGATAAGAACTCAGCTATGTCGA	69	+	chr4	1249841	1249910	1249841..1249910	CG33653-RD,CG33653-RE,CG33653-RA,CG33653-RB,CG33653-RC,	FBgn0053653,	Caps,	1	.
CG3423-RA	CAGGAGCAGAGTGAGGATGGCATAGTTTCAAAGAGTTCGCAAGAGTTTGTGGACCTCAAGGAGTTGGCC	69	+	chr2L	6953903	6953972	6953903..6953972	CG3423-RA,	FBgn0020616,	SA,	1	.
CG33481-RA	ACGCGAGCTTCATTAAGGGATTCTGGAAACTATACATGCGTTCCAAATGGAGCCATTCCAGCTTCTGTT	69	-	chr4	270434	270503	270434..270503	CG33481-RC,CG33481-RD,CG33481-RE,	FBgn0053481,	dpr7,	1	.
CG31414-RA	TGGCCTAGCTGTTCACTGGTACTGGGATGAACTGATAGGACCACAACTCATCGACCAGGCACATACGGA	69	+	chr3R	19532300	19532369	19532300..19532369	CG31414-RB,	FBgn0051414,	CG31414,	1	.
CG1977-RA	ACCCAACCCGTACACGTGGTTCACCATGGAAGCTCTTGAGGAGACCTGGCGTAATCTGCAAAAGATCAT	69	-	chr3L	1781211	1781280	1781211..1781280	CG1977-RA,	FBgn0250789,	alpha-Spec,	1	.
CG32111-RA	GGCTGCGAATATATTTATTGTTTTCCGCTTACTACCTGAATACGAATTAGCATTGGGACCCACCCCTCC	69	+	chr3L	12640095	12640164	12640095..12640164	CG32111-RA,	FBgn0052111,	CG32111,	1	.
CG15684-RA	GTCAGTCGACAGGTGAGTGGAACCCCCTTTTACCCGCCCCACTCTCTGTTGTCGTGTTCTTTTCC	65	+	chr3R	16136348	16136413	16136348..16136413				0	no match
CG4052-RA	CAATCAATGGATTCAATGCCGTGGTCAATCGCGAACCGCTGGTGAAGACCGTGGTCAAGACCGTG	65	+	chrX	5699160	5699225	5699160..5699225	CG4052-RA,	FBgn0029811,	Cpr5C,	1	.
CG8632-RB	TGCGTGACTACCGCAGGGAAATGGGATCTCGAACCAAAGTAATGCTCGACAACAGAAAGGAGTCGGAGA	69	+	chr2R	8541654	8541723	8541654..8541723	CG8632-RB,CG8632-RA,	FBgn0033762,	CG8632,	1	.
CG17515-RA	GGTACGTTTAGCAGCTAAACAAACCTAATTAGTTCCTGAAAGCTTTAACCCCTTAATTGTAGGTTGTGT	69	-	chrX	22414810	22414879	22414810..22414879	CG17515-RA,	FBgn0039966,	Rab21,	1	.
CG17195-RA	CATGCTGGCCTGCTATATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA	66	-	chr3R	21602619	21602685	21602619..21602685	CG17195-RA,	FBgn0039369,	CG17195,	1	.
CG7760-RA	GGCGGAGTAACAGCTTCACAGGATCGGACGGTAGGAAGAGCAGTCCAGAGCAGACCAATCTCAGTC	66	-	chr2R	12165571	12165637	12165571..12165637	CG7760-RA,	FBgn0024249,	cato,	1	.
CG14116-RA	ACCAGGACCAACAAAGTCTTGAGTAGCTATCGATGGACTGTCTACAAGGGACTAGAGGGATTGGCCGAT	69	+	chr3L	13055378	13055447	13055378..13055447	CG34428-RA,	FBgn0085457,	CG34428,	1	.
CG1638-RA	CGGAGCCGAAGTCCAGGGAGGATCTACTCAAGTACCAACCCAAGTTTGAGGACTTACCTGCGCGATCTA	69	+	chr3R	27416668	27416737	27416668..27416737	CG1638-RB,	FBgn0039855,	CG1638,	1	.
CG15378-RA	GCAGCAGTGGTGTGAGTAGTGGTGGATCGTCGACTCCCGCAAAGAAGAGAAAGTACTACTGCAAGGAGG	69	-	chr2L	2032792	2032861	2032792..2032861	CG42296-RA,	FBgn0259192,	CG42296,	1	.
CG8739-RB	TGCTGTTCATCATGAACACCGTGCCAGACCTGTCCAAGAAGAGCAAGGGAGATCAAATGCTGCAGAACA	69	-	chr2R	4618668	4618737	4618668..4618737	CG8739-RA,CG8739-RB,CG8739-RC,	FBgn0086784,	stmA,	1	.
CG32187-RA	CGACAGGACGCAAAAAATCATAAAACGAGGCAAAACTTCGGAGATTGCAAACGTCATGGAGGAACGCGC	69	-	chr3L	17799379	17799448	17799379..17799448	CG32187-RA,	FBgn0052187,	CG32187,	1	.
CG13428-RA	ACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTGGCCAATGATGATCCTCC	66	-	chr2R	16427268	16427485	16427268..16427318,16427469..16427485	CG13428-RA,	FBgn0034515,	CG13428,	1	.
CG17461-RA	GGATCGGATGCCTTTGGAGGAATATGTAGAGGAAAACTAAGCTTAGTAGACCTAGCAGGCTCCGAGAGG	69	+	chr4	1185891	1185960	1185891..1185960	CG17461-RA,	FBgn0039925,	Kif3C,	1	.
CG7306-RA	CCACAGCCAACAGTGAAGGTGCAGTAACCGTTTGCTATATCGTCGGATCGAGTGAGTACACCACCCTGC	69	-	chr3L	20193843	20193912	20193843..20193912	CG7306-RA,	FBgn0036947,	obst-F,	1	.
CG17478-RA	GGCGCTGGGTTCCGACGAAGCTAAACGTAGCAGACTTGGCAACAAAGTTCATTTCTAAACCCTAAGCGT	69	-	chr2R	509717	509786	509717..509786				0	no match
CG4128-RE	TCGATGGCACGTATCACACCAACATTGTGGTCAAACATAACGGCAGTTGTCTGTACGTGCCCCCTGGTA	69	-	chr2L	9809319	9809388	9809319..9809388	CG4128-RA,CG4128-RC,CG4128-RD,CG4128-RB,CG4128-RE,CG4128-RG,	FBgn0032151,	nAcRalpha-30D,	1	.
CG3206-RA	GATTGTGCGAGAACCTGACCATAACTATTACCGATATTGTGGCCAATTTGAAGTTTGCGAATGTGTACA	69	+	chrX	2140468	2140537	2140468..2140537	CG3206-RA,	FBgn0023523,	Or2a,	1	.
CG9843-RA	GACGTGGAACAAGGAGTGGAAGACGGTGGTTTTCTCCGATGAAAAGAAGTTCAACCTCGATGGACCGGA	69	+	chr3R	183370	183439	183370..183439				0	no match
CG2082-RA	TTAGTCTGAGCAAAACGTATATGTGTGAACCCAGAGCCAAACAATCATCCCAAGTGTAACCGCTTTTCC	69	-	chr3R	1585709	1585778	1585709..1585778	CG2082-RA,CG2082-RB,CG2082-RC,CG2082-RG,CG2082-RH,CG2082-RJ,CG2082-RK,CG2082-RL,	FBgn0027608,	CG2082,	1	.
CG9390-RA	AACCATGAACGCTTCGAGGACACTTATTTCTCCAAGTTCCCAGGCTACTACTGCACTGGCGATGG	65	-	chr3L	21265346	21265411	21265346..21265411	CG9390-RA,CG9390-RB,	FBgn0012034,	AcCoAS,	1	.
CG9589-RA	GCGATCATGCCGTGAATGCAAACAATCTGTGCGATCTGATCGTGGAGACGTTTGGACCCAAGAGG	65	+	chr3R	11614659	11614724	11614659..11614724	CG9589-RA,	FBgn0038361,	CG9589,	1	.
CG1578-RA	TGCCGAACATCTGGACGAAATCTTCACGTACGTGGTTAATCGTCTGCTAAAGGATTATCCGCTGGCCAA	69	-	chrX	11704243	11704312	11704243..11704312	CG1578-RA,	FBgn0030336,	CG1578,	1	.
CG14670-RA	AGCGGATCCGACAACGTGATAGCAACGCCGAACCTGACGATGAAGTTCTGTGGCAAGGACGATAAG	66	+	chr3R	1305147	1305213	1305147..1305213	CG14670-RA,	FBgn0037332,	Hcs,	1	.
CG33323-RA	ACGCGTCGCCAATCAGCGGATCGGAAGTGTTAGCTTTACCGTTATGCACTTAACTGGCAATTAGGCACA	69	+	chr3R	2962793	2962862	2962793..2962862	CG33323-RA,	FBgn0037475,	Fer1,	1	.
CG31645-RA	TCCGCATGCTGATAATATTCGTGCTGACATTCGCCCTCTGCAATCTGCCGTATCATGCCCGCAAAATGT	69	+	chr2L	5853179	5853248	5853179..5853248	CG34381-RA,CG34381-RB,	FBgn0085410,	CG34381,	1	.
CG3642-RA	GCCCGAGTGCTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGTGTCCCTTTTTGCACATCG	68	+	chr2L	820362	820430	820362..820430	CG3642-RA,	FBgn0015621,	Clp,	1	.
CG31319-RA	CCCAAGGACCACAAACATGAGCTTGCGTTTCATCCTGCAAAATGAGATGAGAAGCTAGATCGGAGAGAA	69	-	chr3R	10218263	10218332	10218263..10218332	CG34389-RC,CG34389-RA,CG34389-RD,	FBgn0086901,	cv-c,	1	.
CG15309-RA	TGGTGAAGACGTTTCAGGCCTATCTACCGTCCACGAATCGGACATACTCATGTGTTCACTGCCGC	65	-	chrX	10101542	10101607	10101542..10101607	CG15309-RA,CG15309-RB,	FBgn0030183,	CG15309,	1	.
CG15260-RA	TCCCGTTTCAGAACTGACACCCAGTGAGGTACTGACCAGACTTGAGGCACGCCTGGATTTCTTGG	65	-	chr2L	15291896	15291961	15291896..15291961	CG15260-RB,	FBgn0028850,	CG15260,	1	.
CG30414-RA	TCACCTGCTAGACTCCAGTTGTGGCACGACAAAACCAGAATTTATCCCAATGATCACCGGGGGCG	65	-	chr2R	19272716	19272781	19272716..19272781	CG30414-RA,CG30414-RB,	FBgn0050414,	CG30414,	1	.
CG40249-RA	TGCCTTGGATACCTTTAACTGTGAAAACTGTATTCCTATTTGTGTTTTGGGTAACTTCGCGGCAATATT	69	.	.	.	.	.	CG40249-RB,	FBgn0058249,	CG40249,	1	.
CG11459-RA	GGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAGGAGAATGCCTGTGGAAAAGCGACAGA	69	-	chr3R	1852264	1852333	1852264..1852333	CG11459-RA,	FBgn0037396,	CG11459,	1	.
CG5966-RA	CCGACTGCACTATAGGATAACAGTGCGAGTTTCCGGACACGATGAGAGTACGCTACATGGCGGCGA	66	+	chrX	5885687	5885753	5885687..5885753	CG5966-RA,	FBgn0029831,	CG5966,	1	.
CG3385-RA	CCAGCAATTCTCAACCTGTGACTTAATGTATGAAATCGCATTTTTACCATCAGCACTTTCACACTCGAA	69	+	chr2R	20178170	20178239	20178170..20178239	CG3385-RA,	FBgn0005636,	nvy,	1	.
CG31000-RE	ATCCGTAGTACAAGAAAAATGCACGCAAACTTCTACTGAAATGGCAGACTCCAGAAGCACTACCCACCC	69	-	chr3R	27677387	27677456	27677387..27677456	CG31000-RG,CG31000-RF,CG31000-RA,CG31000-RC,CG31000-RH,CG31000-RD,CG31000-RE,CG31000-RI,CG31000-RJ,CG31000-RK,CG31000-RB,CG31000-RL,CG31000-RM,CG31000-RN,CG31000-RO,CG31000-RP,CG31000-RR,CG31000-RS,CG31000-RT,CG31000-RU,CG31000-RV,CG31000-RW,CG31000-RY,	FBgn0011224,	heph,	1	.
CG31538-RA	CTCTGTCGATCCCATGCAGGGTTGGAAGCATCCAAAGAACCTTAAGTATCTCTCCGATATCCCGGCCGA	69	-	chr3R	1102644	1102713	1102644..1102713	CG31538-RA,	FBgn0051538,	CG31538,	1	.
CG1622-RA	ACGCCTACCCACAACCGAATAACTACCGCAACGATTATGACGAGCGTGACTACTATGCTGCCGCGTC	67	+	chrX	13193220	13193287	13193220..13193287	CG1622-RA,	FBgn0030468,	CG1622,	1	.
CG15450-RA	TTTGCAATACCGTACGCTGTTGGTATATTGATTGTATGACCCTTTTGATACTAGTAAATCGATCGATAT	69	+	chrX	20696587	20696656	20696587..20696656	CG15450-RA,	FBgn0031132,	CG15450,	1	.
CG31032-RA	CACCCGTTGCTTGACTCCTCATTTGTTATTCGAGGACACCGGATGATCAGGTGCTAGGACGGCTTCTCT	69	-	chr3R	25684955	25685024	25684955..25685024	CR31032-RA,	FBgn0051032,	CR31032,	1	.
CG11843-RA	GGACCTTTGCTAATGTACCATCGGGAATATCCCTGTATGTACGTAGTTGTGGGAATCACGTCGGCCGGT	69	+	chr3R	24881329	24881398	24881329..24881398	CG11843-RA,	FBgn0039630,	CG11843,	1	.
CG3910-RA	ACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGATGATCCTCGCCATGCCG	65	+	chr3R	5871978	5872043	5871978..5872043	CG3910-RA,	FBgn0037778,	mtTFB2,	1	.
CG17380-RA	GCCAGGACTAAGGAGAACCAAGGCGACTAACAGTAGGTGCAACTGACCCATTTTGAATGTGGGAATAGT	69	-	chr3R	19228511	19228580	19228511..19228580	CG17380-RB,	FBgn0039077,	CG17380,	1	.
CG12240-RA	AACGACAAACCAAGAAAACCCGAAACACACTATGAAGTTTTGAATATTCGCAATGATTGCAGCAC	65	-	chr2R	20046536	20046601	20046536..20046601	CG42568-RA,CG42568-RB,CG42567-RA,CG42567-RC,	FBgn0260770,FBgn0260775,	CG42568,DnaJ-60,	2	.
CG6056-RA	GGCCAAGTGGTATATGAACTTCGATGACGACGAGAAGCAGAAACTGATTGAGGAGGTGCATGCCGTGGT	69	-	chr3R	17095503	17095572	17095503..17095572	CG6056-RA,	FBgn0043012,	AP-2sigma,	1	.
CG9772-RC	AGCCCTCGACAACAAATATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGG	69	-	chr3R	162444	162513	162444..162513	CG9772-RB,CG9772-RA,CG9772-RC,CG9772-RD,	FBgn0037236,	CG9772,	1	.
CG9722-RA	GCGAGGATTCATCCGGAAGGTGTACCTCATCCTGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGT	69	-	chr3R	9979260	9979329	9979260..9979329	CG9722-RA,	FBgn0038209,	CG9722,	1	.
CG32159-RB	ATCGCGTGCTCGAATTCCAGCAGAGCATCATTTGGGACTAAGTTCCGGAAATACCAAGCAACCAATCCT	69	-	chr3L	16416458	16416527	16416458..16416527	CG32159-RB,	FBgn0261799,	dsx-c73A,	1	.
CG6045-RA	TGAGTCCCATAATGCCAAGAATCGTTGGACGAAACGAGGTCTCGGATTGGCGGTAATGGACTACCCCAT	69	-	chr3R	11369542	11369611	11369542..11369611	CG6045-RA,	FBgn0038349,	CG6045,	1	.
CG3091-RA	GCGGCCCCTGAGAGACGCATTGGGCTACAACAATGGATAAAGATACAGGGGATAAGGACTCCGCC	65	-	chrX	2148087	2148152	2148087..2148152	CG3091-RA,CG3091-RB,	FBgn0029608,	CG3091,	1	.
CG1250-RB	TCAAGCAGACATTCCAACGCGTCTTCGCACGTGATGGTCGCAACGACTTGAAGATGGCCTTCAATG	66	+	chr3R	1476330	1476396	1476330..1476396	CG1250-RC,CG1250-RD,CG1250-RB,CG1250-RA,	FBgn0262125,	sec23,	1	.
CG31427-RA	CTGCGTGTCCTCCACAGAGGTAAATCCCGAACACGACTTCTATATCCTTCGCACCTGCAGACAACTTTT	69	-	chr3R	25065333	25065402	25065333..25065402	CG31427-RC,CG31427-RD,	FBgn0051427,	CG31427,	1	.
CG7385-RA	ACCAACGACACCTACAATCTGCAGAACTACGTGGAAAAGAATGGCTATGTTTTTGTGAGGGATCGGCCG	69	-	chr3L	20102716	20102785	20102716..20102785	CG7385-RA,	FBgn0036937,	Ir76b,	1	.
CG7358-RA	GCGAGAGCTGCGTTACCGAAAGCCACGTCACTATCGACTGGATATACAGATCTTTATGGGCGTGGAGAA	69	-	chrX	18783236	18783305	18783236..18783305	CG7358-RA,	FBgn0030974,	CG7358,	1	.
CG2239-RA	ACATATTGCGGATAGAGCAGACCAGATCCAGATCAAATCGGAACAGAAAGGGAGGAACAGCTGCA	65	-	chr3R	26342977	26343042	26342977..26343042	CG2239-RA,CG2239-RB,	FBgn0027654,	jdp,	1	.
CG6070-RA	ATGTGGATTCCCGCCCTATTCGTCATCGTGTGCGCATTCTTAGTTGTCGTGCCCATCTATGTGGC	65	-	chr3R	22934955	22935020	22934955..22935020	CG6070-RA,	FBgn0039487,	gb,	1	.
CG41118-RA	CCGTTATTTGGGGCGCAGAAAGAGAGAAAAGAACCGAAACAGGACGTCTACCGCGCTACCGAGAGACC	68	.	.	.	.	.				0	no match
CG11444-RA	AGCCAGAGTAAAAGCTCTAGATACAAGCACATCGGACATACAGGAGGAGAGACCTGCGAATACCCGGGA	69	-	chrX	4448043	4448112	4448043..4448112	CG11444-RA,	FBgn0029715,	CG11444,	1	.
CG40413-RA	GAGAGAAGACGAAGACAGTTAATATTGATGAGCCAAATTTAATTGAATATTACATAAAGGGTATTCCAG	69	+	chr3LHet	1008780	1008849	1008780..1008849				0	no match
CG40343-RA	AGCCAACGGTGAAATTCTGTGGGAAAGGTTTTGTACAGCACTACGACTGCAATTTCGACAGAGTCGCGA	69	+	chrU	572796	572865	572796..572865				0	no match
CG13298-RA	ACAACATTAAGGCCAAGTACAATCTGAAGACGCCTGAAGCTCCTTAGAACCCACACTTGGTGCGGC	66	-	chr3L	6185561	6185627	6185561..6185627	CG13298-RA,	FBgn0035692,	CG13298,	1	.
CG10377-RC	AGACAAGAGAACATTATTTCTTTCATGCGCCTCATAAACACCACACTCAACAAGCATTCTCCTGTACCC	69	+	chr2L	6925774	6925843	6925774..6925843	CG10377-RA,CG10377-RC,CG10377-RB,CG10377-RF,CG10377-RG,CG10377-RH,CG10377-RD,CG10377-RE,	FBgn0004838,	Hrb27C,	1	.
CG6380-RA	GCAATTTAGCCTGAAGGCAGCCAAATTTGATGAGGTCAACATACTGGCCACGTTCCACCCGGCTG	65	-	chr2L	17291993	17292058	17291993..17292058	CG6380-RA,	FBgn0032632,	CG6380,	1	.
CG9695-RA	ACTTGCAATATCGTAACACTCCAACGAGGACTGTAGAGTTCCCTCTTACTCCCAGTTCTGCCCAAGCCA	69	+	chr3L	16716959	16717028	16716959..16717028	CG9695-RA,CG9695-RC,CG9695-RD,CG9695-RE,	FBgn0000414,	Dab,	1	.
CG11678-RA	GCGACCAGCCCCAACTTTGAAGAGTTTGTTTACACGCAAGACGACTACGAGGAGTACGGTTTCCAGGGT	69	-	chrX	15629884	15629953	15629884..15629953	CG11678-RA,	FBgn0011741,	Actr13E,	1	.
CG40400-RA	ACGAGCGCGTTTAAATGCACGATCATTTTCGAAACGAGCCGAATTCACTCCGTTCATTTCAGCACGACT	69	.	.	.	.	.				0	no match
CG1984-RA	TGCCAGAAGCTTGTCAAAGAAATCACCATGCAGGCTAATGATGGCGATGTTACGAAGATCTGCAAGGAA	69	+	chr3R	2886982	2887051	2886982..2887051	CG1984-RA,	FBgn0037463,	djl,	1	.
CG14720-RA	CATTGGCATTCCCGTAGAGAACCTGCACTTTGAGTCTGTTACCTCGGGCTATGTGCTCAAGGCGGAG	67	+	chr3R	7537595	7537662	7537595..7537662	CG14720-RA,	FBgn0037940,	CG14720,	1	.
CG15709-RA	CCAGTTATGTGGAAAATGGCAGGAAGCTGATACAGTGGCGCTACTGCAAATCAATTTGCCTGCGCG	66	-	chr2R	12141733	12141961	12141733..12141764,12141926..12141961				0	no match
CG13879-RA	TACTTGCGCGACTTCTATTGTGCCAAGAAGAGGGAATGCATAGAAAACCGGCAGACCACAGTGCAG	66	+	chr3L	258626	258692	258626..258692	CG13879-RB,CG13879-RC,	FBgn0035120,	wac,	1	.
CG15048-RA	AAGTGAAATGCAGTCTACAAGTCTTAAAATCTAATGAATGTCAACTATCTTGCAGATTTGCGACG	65	+	chrX	18414695	18414760	18414695..18414760				0	no match
CG2059-RA	GATGACGGAAATTTTCGACGCGATGGTCTCCCTGGACCTTTCGCCAAGCATGTCCATGTCTGAGG	65	+	chrX	7181511	7181576	7181511..7181576	CG2059-RA,CG2059-RB,	FBgn0029942,	CG2059,	1	.
CG32058-RA	GCCCATTTTCAAGATTCTAAAAGAGGTGTACGACCAAAGACCTGTATTTGTGGCACTTCGACATGGATT	69	-	chr3L	10425757	10425826	10425757..10425826	CG32058-RA,	FBgn0052058,	Ir67c,	1	.
CG2093-RA	ACTCGTTGGAGGAGCAGAAGAGCTTTTACGATAACCTGCATTTGGGTCCGCTCAAGATCCATGTCAGCT	69	+	chr2R	3466384	3466453	3466384..3466453	CG2093-RA,	FBgn0033194,	Vps13,	1	.
CG6661-RA	CCAAGTATTCACAGGAACCAGAGAGTATTAGTTAATCATGCCATTCAGGAGATTCAGCACAGGCCG	66	+	chr3L	14028204	14028270	14028204..14028270	CG6661-RA,CR42871-RB	FBgn0036403,FBgn0262145	CG6661,CR42871	2	.
CG9603-RA	ATGGGCAAGCTTTTCTACGAGCTGAGTGTTCCCAAGAAGGAGTGAAGTCGCAGTACCGAACCCTAAGCT	69	-	chr3R	4166217	4166286	4166217..4166286	CG9603-RA,CG9603-RB,	FBgn0040529,	CG9603,	1	.
CG11630-RA	ACGTCGGCAGTTTGTCAGTGTTGATCGTGGGCCTAGATTCTATTTCCCAAATGCATTTCCACAGGAGCA	69	-	chr2L	21783373	21783442	21783373..21783442	CG11630-RA,	FBgn0032964,	CG11630,	1	.
CG6205-RA	ACGCTGTGACGCGCTTCAATTTGGGTTCCTCTCAACTTCCAGCTGAATGGATAGCACTCCTGGGG	65	-	chrX	18271970	18272035	18271970..18272035	CG6205-RA,	FBgn0004957,	por,	1	.
CG9169-RA	ACCAGCCGGAGTCACAATGACAAAGCTTTCGATGCAGTGGTCATCAGTGCCGATCATCCCTACTCCTTT	69	+	chr3L	1416914	1416983	1416914..1416983	CG9169-RA,	FBgn0035217,	FucTD,	1	.
CG15390-RA	CCGGTAACCCCGCGATTTTGAAAAGAACGCCGGACAAAATAATAAGCTGCCTGGAAATCTGGAGGGCCT	69	+	chr2L	2375043	2375112	2375043..2375112	CG15390-RA,	FBgn0031419,	CG15390,	1	.
CG15482-RA	TCGTTTTGGCAAGCCTGATTACCTACCACAATGACTGCGCCATTTACCTCGCGTACCAACCAGGC	65	-	chr2L	13211746	13211811	13211746..13211811	CG15482-RA,	FBgn0032483,	CG15482,	1	.
CG9680-RA	AGAAGCTGCAGGATCTACGACTCTTTCAGCCTCGTCTGTTCGCCACCGTACTTACCATGCCCGTG	65	-	chr3L	16722553	16722618	16722553..16722618	CG9680-RA,	FBgn0004556,	Dbp73D,	1	.
CG3195-RC	AAATTGTACGCGATACAGTCTGTAATAATTGACCCAATCGGACAGAATTTTACTTTCGAGCTCAATGC	68	+	chr2R	19948901	19948969	19948901..19948969	CG3195-RC,	FBgn0034968,	RpL12,	1	.
CG31370-RA	ATCTTGGCGAGATGGATTATGCTATGGTGCGAGATCGTGTGCTCACACATGGAGAGATATGTGGTGCCT	69	+	chr3R	21128682	21128751	21128682..21128751	CG31370-RB,	FBgn0051370,	CG31370,	1	.
CG1646-RC	GGCATCAAGCGGCCTTATTTCCATGTGAAGCCACTCGAGAGGGCACAGCTCAAGAATTGGAAGGACTAC	69	+	chr3R	24641690	24641759	24641690..24641759	CG1646-RB,CG1646-RA,CG1646-RD,CG1646-RC,CG1646-RE,CG1646-RH,	FBgn0039600,	CG1646,	1	.
CG10510-RA	ATGAGGTGATTCTGGACTTTTGAAAATATGTGGCATTCAAAGTTATGTTTAAATATAAAAATGAGCTCA	69	-	chr3L	21201271	21201340	21201271..21201340	CG10510-RA,	FBgn0037059,	CG10510,	1	.
CG6103-RD	GGCGAACAGCTCCCTGATGCAATTGGATCCCACGTACTACCTGTCCAATCGGATGTCCTACAACACCAA	69	.	.	.	.	.	CG6103-RE,CG6103-RG,CG6103-RD,CG6103-RI,	FBgn0014467,	CrebB-17A,	1	.
CG9555-RA	GAATCGTGCAGTAAGAAACCTGATGAAATTCCAGCTACTACTGCTTCACCGAAAGAACCAGCACA	65	+	chr2L	8993235	8993300	8993235..8993300	CG9555-RA,CG9555-RB,	FBgn0032085,	CG9555,	1	.
CG15572-RA	AGCGATCGGTGAGCTATCCGGAGATCATAAGCTGCCTATCCAAGAGACTCCATCGAGCGGAGGTG	65	+	chrX	4164270	4164335	4164270..4164335	CG15572-RA,	FBgn0029702,	CG15572,	1	.
CG33260-RA	ATTGAAAACGGAGAAACTACGGGAAACTGAACGATACATGGATAAGATTCTGACGGGAAAACGCAAGAA	69	-	chr3L	14754420	14754489	14754420..14754489	CG33260-RC,	FBgn0053260,	CG33260,	1	.
CG11856-RA	TCCAACGCCTTTGGAATACCCAAAATTGAAACCCAGTCACCTGCTAAAGACTTTGTGTTTGGCAGTGCA	69	+	chr3R	21083238	21083307	21083238..21083307	CG11856-RA,CG11856-RB,	FBgn0039302,	Nup358,	1	.
CG9448-RA	CAACGAGGAGTCAATGATGCGTCAATGGCTGGACGTGTGCGTAACTGATGGAGGCCTACTGGTGG	65	-	chr3R	5532692	5532757	5532692..5532757	CG9448-RA,	FBgn0037734,	trbd,	1	.
CG11395-RA	TGAGGAAGCAAGTCCAGAGTCGGTAAATCAGCGCAGTCTCTTCAACCTGGATCCCAAGTGTGCAGAAGG	69	+	chr2R	13026135	13026204	13026135..13026204	CG11395-RA,	FBgn0034200,	CG11395,	1	.
CG15456-RA	GATCCTTCGAGGTGTCCATCGACGGTCAGCTAGTGCACTCGAAGCTTTCCTGCCTGGCATTTCCC	65	-	chrX	20297771	20297836	20297771..20297836	CG15456-RA,	FBgn0040650,	CG15456,	1	.
CG8678-RA	GGCAATTACCGCTAAGGATTGACTACGTAACCGTAACATCAAGGATATGGTTCGAGATAATAGACAGCA	69	-	chr2L	21213018	21213087	21213018..21213087	CG8678-RA,	FBgn0032935,	CG8678,	1	.
CG4003-RA	TTAGCATCAGGCAGGACACGGATTTAGAGGCGCCATGAAGATCGAGGAAGTCAAGAGCACCGTGC	65	+	chr3R	6088030	6088095	6088030..6088095	CG4003-RA,	FBgn0040078,	pont,	1	.
CG15873-RA	CGGCAAGGCCATGAAGTTCCTCAGCTTTCTGTACTACAAGGACTGGATTCTTCTCACCATCCAATCCCT	69	-	chr2R	20317200	20317269	20317200..20317269	CG15873-RA,	FBgn0035003,	CG15873,	1	.
CG9884-RA	GCCTTTGACTTGTAACCTTTTCCACTTTGTATTCGAAACAAATGAAATACCTTAACGATGGCAAAACCT	69	+	chr2L	2498343	2498412	2498343..2498412	CG9884-RA,CG9884-RD,	FBgn0011818,	oaf,	1	.
CG9829-RA	TGCCAGCTTTTTGATCAGCTGCGTTTTGGGTCAGAGATTGCGCATCTCAAATGCTGGAACTCTGCTCGT	69	-	chr3R	9188415	9188484	9188415..9188484	CG9829-RA,CG9829-RB,	FBgn0086371,	poly,	1	.
CG31009-RA	GACTTGTTAATATACTTAGCTGCCAATTTGTAATTTTAATAGTGCATTTTAACAACGAGAGCGGTTGCC	69	+	chr3R	25680070	25680139	25680070..25680139	CG31009-RA,CG31009-RB,	FBgn0039709,	Cad99C,	1	.
CG41105-RB	AGAACGAATTCCATATCAAGCCATCGAATATCAGATACCCCGTACATAATAGTTTACCTTCTTCCCTTT	69	+	chrX	22268857	22268926	22268857..22268926				0	no match
CG4705-RA	GCTTTGATCCTCAAGCACACGCAGAATACACCACCTCCAGTCCAGGGTGTGGAATTCGTTACCGAGTG	68	+	chr2L	11094407	11094475	11094407..11094475	CG4705-RB,	FBgn0032339,	CG4705,	1	.
CG40334-RA	TCCCATTAGCTTTGAGCCTAATCCTGAGGCATCTCCTGAACCAGAGGAATTGGCCCTTCTTCCCCCAAA	69	+	chr2RHet	494252	494321	494252..494321	CG41265-RA,CG41265-RB,	FBgn0262123,	l(2)41Ab,l(2)41Ab,	1	.
CG8644-RA	TGAGCAACGATATAGTGCATGTGAAACTGGATGGCGAGAATCTCAAGGAGATCATTGGAGCTCGCTGGT	69	+	chr3R	9117017	9117086	9117017..9117086	CG8644-RA,	FBgn0038133,	Osi22,	1	.
CG2275-RB	GAATCCTGAAGATCCCGAGCAACCCATGCCTCTGGAATTCTTTTCAAGTGCTAGCACCGGTGCCT	65	+	chr2R	5985706	5985771	5985706..5985771	CG2275-RB,CG2275-RA,	FBgn0001291,	Jra,	1	.
CG1320-RA	CCACCCAATGTGGTCACTTTTTCGGTGTCCATGGAAATGACCAAGTACGATGTGCGTAACTATCTGGAG	69	-	chr3L	2373251	2373320	2373251..2373320	CG1320-RA,CG1320-RB,	FBgn0035335,	mRpL23,	1	.
CG30340-RA	TCTTCCTCATCACAGCCGTGCTCAATCTCTCGGTAGTCAGCTACGATCGTCTCACGGCCATCGTG	65	-	chr2R	5488261	5488326	5488261..5488326	CG30340-RA,	FBgn0050340,	CG30340,	1	.
CG9029-RA	CTTCTGTATTCAATGTATGCATTTATGTATTCCAACTTCTAGCATGGGCATTAATAAAATTGCAAAAAA	69	+	chr2L	5886537	5886606	5886537..5886606	CG9029-RA,	FBgn0031746,	CG9029,	1	.
CG9630-RA	CGTGCGGGGTTGAGAAATCCTGTTCTCGTATCAGTCAAAGAGAAGGCATCCGTAAACACTCCAGCCCGC	69	-	chr3R	4094850	4094919	4094850..4094919	CG9630-RA,	FBgn0037561,	CG9630,	1	.
CG2968-RA	CAAAAACAGCGGCTGATCACTGAAGTTTTCTCGTGTTTTTCGCTATCAAACCGAAATAAAAACAG	65	+	chrX	10107042	10107107	10107042..10107107	CG2968-RA,	FBgn0028342,	l(1)G0230,	1	.
CG9123-RA	GCCTGGATTTCCCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGGTAAGGGTC	69	-	chrX	15235162	15235290	15235162..15235195,15235254..15235290	CG9123-RA,	FBgn0030629,	CG9123,	1	.
CG31692-RB	TCCCTTGGATGGATCCTCCAACATAGACTGCCTGGTGTCGATCGGTTCAATCTTCGCCATTTACCGCAA	69	-	chr2L	19762213	19762282	19762213..19762282	CG31692-RA,CG31692-RB,	FBgn0032820,	fbp,	1	.
CG6467-RA	CCAGTGGTGTGGCTACCAATCTTCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGCC	65	+	chr3L	6032892	6032957	6032892..6032957	CG6467-RA,	FBgn0250815,	Jon65Aiv,	1	.
CG9642-RA	TGGCAGTGCCTTCTTAATCCGGAGCACACACTGAAACAGGAGTTTGTCTCGAATATGCTGGAACGTGCT	69	+	chr2R	12935373	12935442	12935373..12935442	CG9642-RA,	FBgn0034183,	CG9642,	1	.
CG9893-RA	ACGACCCCGTTTCCAAATCCGTTCACCTGAAAATCTGGTTCCACTTAAGCTGAAGGCATCAGTTGCTCA	69	-	chr2R	18949348	18949417	18949348..18949417	CG9893-RA,	FBgn0010622,	l(2)06496,	1	.
CG14238-RA	TCGGCGTGAAAGTCGAATGGCCAAGTCACGTCAGTTTCAATCTCGTCGAAAAGTGCAGGATGCTGATCA	69	+	chr3R	22285686	22285755	22285686..22285755	CG14238-RA,	FBgn0039429,	CG14238,	1	.
CG15173-RA	TTACGCAAGTTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTTGCGCCG	65	-	chr2L	19044813	19044878	19044813..19044878	CG15173-RA,	FBgn0032744,	CG15173,	1	.
CG5156-RA	ACCCCTCCACTGAACCAACTGAAGTAATTCCAGCGACTAGCATTTCCCGCCAGAACTTAGTCGACCCC	68	+	chr2L	1229400	1229468	1229400..1229468	CG5156-RA,	FBgn0259229,	CG42329,	1	.
CG11870-RB	CCAAGAGGTGAATATCACAGAATAAAGAGTAAATACCTAGATCAGTAGTGAGACACGCCATTCAG	65	+	chr3R	6125467	6125532	6125467..6125532	CG43143-RD,CG43143-RA,CG43143-RC,CG43143-RB,CG43143-RG,	FBgn0262617,	CG43143,	1	.
CG8694-RA	GCTGCCTCTAAGTCCCGAATATCAACGGTACAATGTGCAGACTGAACGCGGTGTTTCCAGATCTTCCCT	69	+	chr2R	4342472	4342541	4342472..4342541	CG8694-RA,	FBgn0002569,	Mal-A2,	1	.
CG1161-RA	GGCGACTTAAGACACGTATTCCAAGCAGTTATCCTTTGCGAAATTCCCCTTTGGATCAAATTGATTATC	69	+	chr3R	1182345	1182414	1182345..1182414	CG1161-RA,CG1161-RB,	FBgn0037313,	CG1161,	1	.
CG11971-RA	TCGCCGAAGTCACCACGGCTTCTGAGGGCTCAAATATTCCTGGGGAATCCACTGTTCCTGAAGATTCTA	69	-	chr3R	4817181	4817250	4817181..4817250	CG11971-RA,	FBgn0260243,	E(var)3-9,	1	.
CG4015-RA	GGCTTGCCGACAAAGCCACTTATCCACCAGGAATTGGATCATATGTTTCCCTGCAATGCCATCGGTCG	68	-	chrX	3067731	3067799	3067731..3067799	CG4015-RA,	FBgn0000644,	Fcp3C,	1	.
CG33456-RA	GGCGGCCCCCAACAGTTCCCCTCAAGTCGACAAACGAAAGTCACCTACTAAGAAGATCCGATCTCCTC	68	-	chr2R	12836900	12836968	12836900..12836968	CG34415-RC,CG34415-RD,	FBgn0085444,	mute,	1	.
CG31364-RA	CGACCGATCGAGTTTTAGTGCTAAAGCGATTCGAAAGATTGTCTTGCTTAAACCAAAAGGGCCCCTCGA	69	-	chr3R	7603448	7603517	7603448..7603517	CG6930-RB,CG6930-RC,CG6930-RD,	FBgn0086910,	l(3)neo38,l(3)neo38,l(3)neo38,	1	.
CG14226-RA	TCGCATCGATAATTCATCAACTCATCTTCAGCCGCATATCCTTCCAACGCCATGATCTGGTCACCGGAT	69	-	chrX	19570443	19570512	19570443..19570512	CG14226-RA,	FBgn0043903,	dome,	1	.
CG15503-RA	TGACAAAGCCGGAGTTAAGCGTGATAGGGACATTTGCATGGAAATCGTCGGTGACATTGTAAATGCCTA	69	+	chr3R	17233835	17233904	17233835..17233904	CG15503-RA,	FBgn0038888,	CheB93a,	1	.
CG3344-RA	CGCGCGTGGGAATCACCGTAGATCGAGTTCTCGAGGGTTACGAGAAGACCTATGGCAACTTCAGCATGT	69	-	chr3L	686079	686148	686079..686148	CG3344-RA,	FBgn0035154,	CG3344,	1	.
CG9062-RB	GTGGGGGCAATGCTAACAATTCACTGCAGAATAGCCAGAGCGATGCTAATTCGGAGGGATCCCAACTGC	69	-	chr2R	7168980	7169049	7168980..7169049	CG9062-RB,	FBgn0033607,	CG9062,	1	.
CG9590-RA	TGCCCGTGCAGAGTTGCAGGAAACGATAAACGAGGTGAAGGAACTGATCGAACTGGAGGATCTGGATGT	69	+	chr3R	11613312	11613381	11613312..11613381	CG9590-RA,	FBgn0038360,	CG9590,	1	.
CG32148-RA	TAAAATTTCTGCCCAAAAACGAGTTGCTTCATCAATCACTATACTTTTGCAGAGGAATGGCCAAAAAGA	69	+	chr3L	15016681	15016750	15016681..15016750	CG32148-RA,	FBgn0047338,	CG32148,	1	.
CG31103-RA	ACAAGTTTTGAGCTGCGATGAATTTACACTGAAGTCCGAGGATCCAGTGGGCGAAAACTTGTTGGGCGA	69	+	chr3R	21046078	21046147	21046078..21046147	CG31103-RB,	FBgn0051103,	CG31103,	1	.
CG32393-RA	GCTGCGATGCGCTACAGACGGTAGCCAAGGAAATCACACACAGCAACTATCAGATGTTCTTGCGTCGC	68	-	chr3L	6734583	6734651	6734583..6734651	CG42799-RB,CG42799-RC,CG42799-RD,CG42799-RE,	FBgn0261934,	dikar,	1	.
CG9299-RA	TCTGGCATCAGGCGCATCCTCTCTGGCCCATTTGGACTCCTCCCTGAGTGGATACTCACACGGAG	65	+	chr3L	19529976	19530041	19529976..19530041	CG9299-RB,	FBgn0036881,	Cpr76Bd,	1	.
CG3330-RA	CCAAGTGCCGCTATTGTGAGAACATGGCCAAGAACTTTCTGTACCTGGAGAGCCTGATCCGGAACAACA	69	-	chr3R	23156210	23156279	23156210..23156279	CG3330-RA,	FBgn0039511,	CG3330,	1	.
CG6112-RA	ACAGGTCGAGTTGACATTTACCCGTGATCGTGCGTATTATTTTACAACCGTTTTCATACCTGGCA	65	-	chr3L	15856255	15856320	15856255..15856320	CG33989-RD,CG33989-RH,	FBgn0036542,	pHCl,	1	.
CG6148-RB	TCGGTGGCTAATATTAGAGTCTTGCGACATGTTTAGCTTTCTGAAGCGCGAGAAGAACACCCAGGAGGT	69	+	chr3R	8523804	8523873	8523804..8523873	CG6148-RB,	FBgn0016693,	Past1,	1	.
CG6017-RA	TGCATCGGGCTGAAGAACCACAGTTACTTTATGGGATTCCTCTGGATGTTGCTGATTATGTGCGCCTGG	69	+	chr3L	15983384	15983453	15983384..15983453	CG6017-RA,	FBgn0259824,	Hip14,	1	.
CG30109-RA	CCGGCTCGGAGTACGACAATGCGAGTAGTTCCGGCGGAAAGACGCAACCCAAGACAAAAAGTTGA	65	+	chr2R	13557946	13558011	13557946..13558011	CG30109-RA,	FBgn0050109,	CG30109,	1	.
CG12048-RA	AAGAACACGATGCTCCCGATATTCCGCATACCATTCCCCTCGATTGGTCTCTGTCCGAGGAACCG	65	+	chr3R	25490881	25490946	25490881..25490946	CG12048-RA,	FBgn0039675,	ppk21,	1	.
CG13049-RA	CTCCCGCCCCATACTTCTTCTAAGGACTTAGCTGTAGGATCACCCAGCTCATACACTCCCATCCGTCCT	69	-	chr3L	16274311	16274380	16274311..16274380	CG13049-RB,CG13049-RA,	FBgn0036592,	CG13049,	1	.
CG1494-RA	GCTACTGTCCGCAAAAAGACAGCCTTCCGTCGGAGTTTACCCCGCGTGAATTGCTGTACATTCACG	66	+	chrX	21162310	21162376	21162310..21162376	CG1494-RA,	FBgn0031169,	CG1494,	1	.
CG6159-RA	TGCCAGCAAGAAACACCAAAAGACTGCAACTACTAAGGGCTTTCGGAGAAACATGGAGGTGCTGATAGC	69	+	chr3R	19961867	19961936	19961867..19961936	CG6159-RA,	FBgn0027103,	sec10,	1	.
CG17527-RA	TGGTGGCGTTCGTGGAGATCGATAGGTTGAAATATCCCAGGATCATCGAATGGGTCAGGCGTTTGGAGA	69	+	chr2R	14292649	14292718	14292649..14292718	CG17527-RA,	FBgn0063495,	GstE5,	1	.
CG31332-RA	TGCATGTCCCCGGCATGTAGGCTTTTTATACGCAGTGCTATGGCAATTTAAACGCAAACATAAACTGGA	69	.	.	.	.	.	CG31332-RC,CG31332-RA,CG31332-RB,CG31332-RD,	FBgn0260463,	Unc-115b,	1	.
CG4082-RA	GCTGGGAGATCCTGGTACTGCCAAGTCACAGTTGTTAAAGTTTGTGGAGAAGGTGGCACCCATAGCAGT	69	+	chr3R	6615567	6615636	6615567..6615636	CG4082-RA,	FBgn0017577,	Mcm5,	1	.
CG7445-RA	GCCAGTGTCCTTTAGTAAGCGCACCTAAATGTACCAATAGAACCGTCGGACGAACGGATGAGCACTCGT	69	-	chr3L	19982999	19983068	19982999..19983068	CG7445-RA,	FBgn0005633,	fln,	1	.
CG14191-RA	TCGCCCTTCCAGTCCGACACAGTCGCAGTTCTTCCGAAGCAATCAATACTCTCAAACACGCCAACATGA	69	+	chrX	18975711	18975780	18975711..18975780	CG14191-RA,	FBgn0030981,	CG14191,	1	.
CG14181-RA	TGGCGGATCGCAATATCAATTCGCTAGGAAAAGAGGCTGAGAAACTGGAGCAACATTCGAAAAAAGCCT	69	-	chr3L	9129451	9129520	9129451..9129520	CG14181-RA,	FBgn0035965,	Use1,	1	.
CG33275-RA	CAGCGTGTCAATGTCGAAGCAAGTTTCATACATATCTAGTTCTTAGTCCACACAATCGAACGATCCGCA	69	+	chr3L	7632370	7632439	7632370..7632439	CG33275-RA,CG33275-RC,CG33275-RB,	FBgn0035802,	CG33275,	1	.
CG15005-RA	CGTTCCTTTCGAAGCCTCCAATCGCGATGAACAGGAGTCCTATCCACCCATCTTGGCATCCTCTCC	66	-	chr3L	4201754	4201820	4201754..4201820	CG15005-RA,	FBgn0035508,	CG15005,	1	.
CG31041-RA	CGGATCTCTTCAACGTCGAATGCGTGGACTACTACAGCCCGCTCCTTAAGGGTCACGTGGACAAGTACA	69	-	chr3R	25416405	25416474	25416405..25416474	CG31041-RA,	FBgn0051041,	CG31041,	1	.
CG10428-RA	GGGCTACCAGGTCATTCTCACACGCTTAAAGCCCGAACAGTGTACGCCAAAGAATCACCTGCTAGTCGG	69	+	chr2L	18950833	18950902	18950833..18950902	CG10428-RA,	FBgn0032724,	CG10428,	1	.
CG15159-RA	GGGCGGCAAGCTCATAAAACTGTCGACACATGCAGCAGGCAAATTACACACGATGCAAAAAGCCT	65	.	.	.	.	.				0	no match
CG15069-RA	CTGGATCGTACCTGTTCCGATAGCGTGGTCTCACTTCGCTACCGCAAATCCACCAGTGACCTGAC	65	+	chr2R	14432438	14432503	14432438..14432503	CG34390-RA,	FBgn0085419,	Rgk2,	1	.
CG2848-RA	TCTGGTGATGAACCTGATCCAGGCATCCGTCTTTCAGCTGCACTCCTACATGCTGGTGGATGTGG	65	+	chr2L	2762869	2762934	2762869..2762934	CG2848-RA,	FBgn0031456,	Trn-SR,	1	.
CG41089-RA	TCAGCAAGCAGTGAGATTAGTTCCGGCAGCTATCGAGGACAAGGTCATGGAAAACTTAGAGAAGCCCAA	69	.	.	.	.	.				0	no match
CG15440-RA	TGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGAACGGGTACATCGGATTGGGTA	69	-	chr2L	4453796	4453865	4453796..4453865	CG15440-RA,	FBgn0031607,	CG15440,	1	.
CG2048-RB	GCCGGCTCAACTTTTTCTTTGTTAACTTGAAGTCCCAGACCAAATCAGGCAGAACATGCAGAACCGATC	69	-	chr3R	26881627	26881696	26881627..26881696	CG2048-RA,CG2048-RB,CG2048-RC,	FBgn0002413,	dco,	1	.
CG15594-RB	AGATCCAGAAGCTGTTTTTCCCCCTACTGATTGCCTACAAGCTCAAGTTCCTCACCCTCATCCCG	65	+	chr3R	2114989	2115054	2114989..2115054	CG15594-RA,CG15594-RB,	FBgn0037421,	CG15594,	1	.
CG1149-RA	TCGGTGCAAGCGTCTGATAGTGGTGCTCTATCCAAACGTGAAGAACTTCGACAGTCTGGATAGCGAGCT	69	-	chr3R	3192127	3192196	3192127..3192196	CG1149-RA,	FBgn0015770,	MstProx,	1	.
CG17374-RA	GGGCTTGGTAGCAGATATGGCAGAGGACAAAATTGACATGGAAATAGGCGGTACCCTTCAACAACGAAT	69	-	chr3LHet	1137012	1137081	1137012..1137081	CG17374-RC,	FBgn0040001,	CG17374,	1	.
CG12126-RA	CACTGTCAGGCAGAGGTCTTCAACTCACCAGGAGACTTCATCGACGACCCCAGATCTGCCAGAAG	65	-	chr2R	4150620	4150685	4150620..4150685	CG12126-RA,	FBgn0033280,	CG12126,	1	.
CG9156-RA	TCAACCGGATCGAGGGAAATGGCTCAACTACAACGTATACCTCCATGGATCCTAACTGTCTTCAGAGGT	69	-	chrX	15253267	15253336	15253267..15253336	CG9156-RA,	FBgn0003132,	Pp1-13C,	1	.
CG15925-RA	TGCCCGACGGCTTGACGAAAACTCTGCAGAATTACAATTTCCAAATTTCAGTCTCGTGAGGGAAATCGA	69	+	chr2R	12333695	12333764	12333695..12333764	CG15925-RA,	FBgn0034129,	CG15925,	1	.
CG31532-RA	TCGTGGTAGCTCCCGTTAAGCTTAAACAGAATGCTGGACAAACGCTCTAGGACATTGGTACTGCCCGCT	69	+	chr3R	616970	617039	616970..617039	,CG42574-RB,CG42574-RC,CG42574-RD,CG42574-RE,CG42574-RF,CG42574-RG,CG42574-RH,CG17735-RB	,FBgn0260794	,CG42574	1	.
CG9018-RB	ACGCCTCGATGTACGTTCTTCATGGTCTAGGCAATGCATGGTCCTTGGGGTTGTTAGATAAAGATCGTT	69	-	chr3L	2235769	2235838	2235769..2235838	CG9018-RB,	FBgn0035318,	CG9018,	1	.
CG12770-RA	GAGCGCGAGAAGTACGACAACATGGCCGATCTATACGCAATCATCAACACCATCCAGCAGCTGGAG	66	-	chr2R	3967332	3967398	3967332..3967398	CG12770-RA,	FBgn0021814,	Vps28,	1	.
CG9936-RD	TGAAGGACGTAGAGGAAGGAGTAGGAGTAAGTAGAGGACGCGGATAGGAGTAGAGTTAGCATGAGCGGT	69	-	chr3L	20987775	20987844	20987775..20987844	CG9936-RC,CG9936-RD,CG9936-RE,	FBgn0003415,	skd,	1	.
CG11732-RA	TCCCCTGGGTCGGTGGTATTTTCCATGTTCCTAACACGTCCCAGTTTAGATAAAGGCAATTCCGAATGT	69	-	chr3R	4246047	4246316	4246047..4246086,4246286..4246316	CG11732-RA,	FBgn0037589,	Obp85a,	1	.
CG3088-RA	GCAGTGGCACTATTATAGGCGACACCTGGATCCTTACATCCGCTCAGTGTCTAACGGGCAGTTCCG	66	-	chr3L	9594176	9594242	9594176..9594242	CG3088-RA,	FBgn0036015,	CG3088,	1	.
CG17320-RA	CCTGTTTTACTCGCGATCCTGTAGCTGCAAAATGTCGAAGACCCGTGTGTACGTTGTCGGTGTGGG	66	+	chr2L	18831310	18831376	18831310..18831376	CG17320-RA,	FBgn0015808,	ScpX,	1	.
CG13487-RA	ACCGGAGCATCTTTACGAGCGGTTCGATCACTACGAGTATCCGGACACTCACACCATGAGCAAGCTGAA	69	+	chr2R	17831821	17831890	17831821..17831890	CG34368-RC,	FBgn0085397,	Fili,	1	.
CG5237-RA	CGCGTGGTAACTCAAGGGACAACAAAGCCGTTTCTCGCTATCTTCCCTGGCTAAACAATGCTCCATCGT	69	-	chr3R	15057474	15057543	15057474..15057543	CG5237-RB,CG5237-RC,	FBgn0038693,	unc79,	1	.
CG4247-RA	TCGGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACTTCCGCTATATGAACTTC	69	+	chr3R	11055864	11055933	11055864..11055933	CG4247-RA,CG4247-RB,	FBgn0038307,	mRpS10,	1	.
CG30067-RB	TCAATGCCAGCTCGGTTCTGCAGGGAAATCGATTGATCCAAGCGAAAGTTCGACCCATGTTGGAGC	66	-	chr2R	10258149	10258215	10258149..10258215	CG30067-RA,CG30067-RB,	FBgn0050067,	Obp50a,	1	.
CG32204-RA	GCCGTTTTTGGTCCACAAGGTACATTACAGTCAACAGAACTTGAAACATACTGTCTCAATGTCAGCAGA	69	-	chr3L	18916397	18916466	18916397..18916466	CG32204-RB,	FBgn0052204,	CG32204,	1	.
CG18543-RA	CCGATGAGGATTGCAACCGTATCATGGATGTGCTCCACACTCTTTAAGTGAATCGCTGGCATGTCCATC	69	+	chr3L	8406781	8406850	8406781..8406850	CG18543-RA,	FBgn0010431,	mtrm,	1	.
CG13446-RA	CATCGGCGAGGAAAACTACAGCTATCGATCGACCTCGACCATAGTCCTCATGGTTTCCGCCTGGATCCT	69	-	chr3L	15640460	15640529	15640460..15640529	CG42334-RC,	FBgn0259236,	comm3,	1	.
CG11804-RA	TCAGCTTAACCTTGACGACTTCTCGCTGGAGAGTTTGGATCCCCTGCGAAAGTAGAGCGGTGCTAC	66	-	chr2R	5322768	5322834	5322768..5322834	CG11804-RB,CG11804-RC,CG11804-RA,CG11804-RD,CG11804-RE,	FBgn0029092,	ced-6,	1	.
CG5398-RA	TGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCTTATAAGCCCTTGGAAATTCCAGTGTGCAACT	69	+	chr2R	19491004	19491073	19491004..19491073	CG5398-RA,	FBgn0034882,	CG5398,	1	.
CG14747-RA	ACTTCTCGCACGATCTGTATCCGCTCTACAAGTATCCCACGCTTTACGAGAGCAACTATCCGTCGCCCA	69	-	chr2R	4469178	4469247	4469178..4469247	CG42326-RC,	FBgn0259226,	CG42326,	1	.
CG2989-RA	ACCCACTTACGTAAGACCCATTGTACCCCTCCTAAGACCCGAGTCCAATGAGTCCTCACCACTGGTCAT	69	+	chrX	9937564	9937633	9937564..9937633	CG43374-RH,CG43374-RI,CG43374-RJ,	FBgn0263132,	Cht6,	1	.
CG10637-RA	ATACCTACCCCTGCGAAACCCAAGAAGGAGAAGTCCAATCTGGCTGTAAGGGTTCTGCCGGGAAA	65	-	chr2L	18958675	18958740	18958675..18958740	CG10637-RA,CG10637-RB,	FBgn0015772,	Nak,	1	.
CG32682-RA	AGCAGCAACCGAATAAGATTGTCATCGAAATTGGTCTGAGCAATGACAGCGGACCAAGCAGTGCG	65	-	chrX	10202198	10202263	10202198..10202263	CG42275-RI,	FBgn0259170,	alpha-Man-I,	1	.
CG4199-RD	GGGCGTGAAGGTAAATCGTAACGGATCCGTGGACGTCACTGATTTCCTGGAGTCCAATGTACCCGATGT	69	-	chrX	1961177	1961246	1961177..1961246	CG4199-RC,CG4199-RD,CG4199-RB,CG4199-RA,CG4199-RG,CG4199-RH,CG4199-RI,	FBgn0025628,	CG4199,	1	.
CG32639-RA	GTGGGTCGTATGGAGGATGATCCATCCCTTAATCCCAAGCCATCAAGGGAGCGAAGTACGGCCGG	65	-	chrX	13130182	13130247	13130182..13130247	CG32639-RA,	FBgn0052639,	CG32639,	1	.
CG4710-RA	ACCTTCCAATGGCACCATTTGGTTTGCGCACATTACCTGTTCTATCCAGGAGAAGACTTCTTTCTGCCT	69	-	chr2L	1115311	1115380	1115311..1115380	CG4710-RB,CG4710-RA,	FBgn0016926,	Pino,	1	.
CG14366-RA	CCGAGGACAAGATCTATCGCAAGTTTGCCTTTAAGTGCGAGCATCAGAATATGCGTACCTATTGGCTGG	69	+	chr3R	9572678	9572747	9572678..9572747	CG34383-RC,CG34383-RB,CG34383-RD,CG34383-RE,CG34383-RF,	FBgn0085412,	CG34383,	1	.
CG7756-RA	TTTGCCGAGGAATTCAAGCGGAAGCACAAGTCGGACATCAAGGGAAATGCCAGAGCGTTGAGACG	65	+	chr3R	8871855	8871920	8871855..8871920	CG7756-RA,	FBgn0001217,	Hsc70-2,	1	.
CG2981-RA	GGGTCATCAACTTGATGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGGGCCA	69	-	chr2R	954274	954343	954274..954343	CG2981-RA,	FBgn0013348,	TpnC41C,	1	.
CG13562-RA	TGGGCAGCCATGGTCTCTGCGTCGACATATACATCAACACGTTCGACTATCCCTTCTACGCCGTGAACT	69	+	chr2R	19792365	19792434	19792365..19792434	CG13562-RA,CG13562-RC,	FBgn0034928,	CG13562,	1	.
CG2922-RA	GGAGGAGCTGGTTACCGATCAGGCTGTTCGTCATCTGAAGAACTACTGCCCACTGTTGCAGGCTTT	66	-	chr3R	1422818	1422884	1422818..1422884	CG2922-RA,CG2922-RG,CG2922-RC,CG2922-RF,CG2922-RD,CG2922-RB,CG2922-RE,	FBgn0250753,	exba,	1	.
CG7436-RA	GGAGGACGATGATGCCATGTTCCGTTTCGATTACCAACCCGAGTTTCTAAAGTGGTCGCTGCAGCCAC	68	-	chr3L	8170406	8170474	8170406..8170474	CG7436-RA,	FBgn0020392,	Nmt,	1	.
CG7051-RB	TCGCCACACTTCCAATACGACGAGTTAGAGAAAGCCATTTTCAAGGCAATTGGCAACGACCACGAGCTT	69	-	chr3L	149867	149936	149867..149936	CG7051-RB,CG7051-RA,	FBgn0035100,	CG7051,	1	.
CG13842-RA	AGCACGATGTCAAGCTGTGCCTGAATGTCTTCATTACCTTCCAACTGCCCAAACTCACTGCCGACCTG	68	-	chr3R	18530872	18530940	18530872..18530940	CG13842-RA,	FBgn0039009,	CG13842,	1	.
CG14420-RA	TGGTGTGGAAATGCCGAGCACTGAGTGAGCTGAAGCAAGCAGAGAACTGACATCCCAGAACATCTGTGT	69	+	chrX	2833059	2833128	2833059..2833128				0	no match
CG11091-RA	TAGTGCTGCCCGCCTCTGGCACGTCTTGTGGAAAGTGTAGAATCTGTTGTAGATGCAGGACCACT	65	-	chr4	997738	997803	997738..997803	,CR34154-RA,CR34154-RB	,FBgn0083990	,sphinx	1	.
CG17681-RA	CCAGCAACTGTGTCGGCTACTTCTGGCTGGACAACTACTTGCGATGGATGGATCAAAACCCGACGTTG	68	+	chr2L	18153498	18153566	18153498..18153566	CG17681-RA,	FBgn0032668,	CG17681,	1	.
CR32892-RA	TGTGATGTCAAACCAATAGACAAGCATATAACCGAACAATCATGTTGATTTTCACACGACTGAGC	65	+	chr2R	13588737	13588802	13588737..13588802	CR32892-RA,	FBgn0063388,	snoRNA:U27:54Ea,	1	.
CG12720-RA	CGCACCCAATCGCTACTCATGTCCCTTCGCAAGCATTCCGACTACAAGCTGAAGTACGAGGAGAAGGG	68	+	chrX	12090541	12090609	12090541..12090609	CG42338-RH,CG42338-RI,CG42338-RJ,CG42338-RE,CG42338-RF,	FBgn0259240,	Ten-a,	1	.
CG31758-RA	ATATCGCCCATTAGCTGCGATGATACGGAAAAGGTGGTGAGGCCAATCTGTCCCTGTCCCAGGAA	65	-	chr2L	11842081	11842146	11842081..11842146	CG42325-RF,	FBgn0259225,	Pde1c,	1	.
CG4231-RA	TTCTTAGCTCAATCCAGATTGGCGTTAACATGTACGGAAGCAGCTTTAAAAGTTATTTGACCATGATGG	69	+	chr2L	1523009	1523078	1523009..1523078	CG4231-RA,	FBgn0026397,	Or22b,	1	.
CG11151-RA	AAAATCGCCGATTGCACGCCTTCTGCTCATTACTTCGCGTTCCGCTCTCAAAGCAAATACCCCCAC	66	+	chrX	13633839	13633993	13633839..13633893,13633981..13633993	CG11151-RA,	FBgn0030519,	CG11151,	1	.
CG5610-RA	CGATGATCGTGGATAATATACGATGAGCCAAACCATGAGTATTTCCTCGGCGTTGTACAACACTAACAG	69	-	chr3R	20227317	20227386	20227317..20227386	CG5610-RA,	FBgn0000036,	nAcRalpha-96Aa,	1	.
CG14860-RA	AGAGCGAGGATTCTGGCATTGACGAGGAAAGCTTTAAGGAGAGTAAGCCTCATAATAATCCATGCGCCA	69	+	chr3R	10721199	10721268	10721199..10721268	CG14860-RB,	FBgn0038273,	CG14860,	1	.
CG1856-RD	CGCGTAGTCAAAGACCGAAAATCAAGTAGTTGCTTTGGCTGACACTTTACAAACCCATCCACTAGGGGT	69	+	chr3R	27556812	27556881	27556812..27556881	CG1856-RF,CG1856-RC,CG1856-RD,CG1856-RH,	FBgn0003870,	ttk,	1	.
CG15349-RA	TCAGGAAGATCAGCAGTTCCAGCTCCAGTTATGCGTACAAGGACTACAAGGATTCCAGCGAGAGCGGC	68	+	chrX	8366825	8366893	8366825..8366893	CG33962-RA,CG33962-RC,	FBgn0014464,	Cp7Fa,	1	.
CG3132-RA	GATACCCCCATTCTGAACGCGAGGACCGTTTAGTCGTCGGCCTAAGGACCATTGCGACTTGCATC	65	+	chr3R	7829046	7829111	7829046..7829111	CG3132-RA,	FBgn0260746,	Ect3,	1	.
CG10123-RA	GCTCGCCAGAACACTGTCCGTAAGAATGGACCCAACCTAGGCAGGCTGTACTACAAGTGTCCCAAAC	67	+	chr2L	19501536	19501603	19501536..19501603	CG10123-RA,	FBgn0040268,	Top3alpha,	1	.
CG1153-RA	AACCCAAATCGTTAAACGTGCAAGAACAAAAACCAACCAAACAAAAACGCATAATGGCAAGCCAT	65	+	chr3R	2074875	2074940	2074875..2074940	CG1153-RA,	FBgn0037414,	Osi7,	1	.
CG30023-RA	TGGCCTCGACACAAACCCCTCCCGGACATGTAACCAAAACACTGATCAAGGAGAATACCCACATCGATT	69	-	chr2R	7273298	7273367	7273298..7273367	CG30023-RA,	FBgn0082585,	sprt,	1	.
CG1447-RB	CAACGGAACCCCTTTAACTAATCAAGCCAAATAGCCATCCCAAAGATCATATAGTCGCTCCTAGTTCCA	69	+	chr3R	26756031	26756100	26756031..26756100	CG1447-RC,CG1447-RB,	FBgn0020912,	Ptx1,	1	.
CG2616-RA	CCAAGAAAAGTCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCGGATTTGTGCTGTTAC	67	+	chr3R	3549429	3549496	3549429..3549496	CG2616-RA,	FBgn0037512,	CG2616,	1	.
CG14645-RA	AGCTCGCTCTAACCTCCCTACTAGTGATTTCTTTTGGCATTGCCCTCGCCTATGATGGTGACGGACAGC	69	+	chr3R	160848	160917	160848..160917	CG14645-RA,	FBgn0040687,	CG14645,	1	.
CG14630-RA	TCGTGGCCCGCTGAATATACCAGTGTCCCAAGTGGCCTACAACAAGGAGAGGAAACAGTTGGAGATCAT	69	+	chrX	925762	925831	925762..925831	CG14630-RA,	FBgn0014903,	CG14630,	1	.
CG30398-RA	GCCAACCAATTTCTTTCGATCCCAGCAATGACAACCAGTCCCAACGTAGCAGAAGTGGATGATGGCG	67	+	chr2R	17605408	17605475	17605408..17605475	CG30398-RA,	FBgn0050398,	CG30398,	1	.
CG5225-RA	GGACACCACCATCACTATTATCCACCAGGACACGATAAGGGAGGCTACTATCCGTATCCACCCCACGGT	69	+	chr3R	12855498	12855567	12855498..12855567	CG5225-RA,	FBgn0038468,	CG5225,	1	.
CG3836-RA	GGATTTGAGCACATTACAGATCCGGAACTTCGATTGGTCAGGGAGCTAGTCAGCATGGTGAGCGCGG	67	-	chr3L	14398038	14398105	14398038..14398105	CG3836-RA,	FBgn0003459,	stwl,	1	.
CG3557-RA	CTCCACTAGTGCCCTGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCGG	65	-	chr2L	2385212	2385277	2385212..2385277	CG3557-RA,	FBgn0031423,	CG3557,	1	.
CG6535-RA	TGGTTGGCTACGTTCTTGGACTGGGTGATCGGCACACACAAAATATCCTAGTAGACCAGCAGACAGCGG	69	-	chr3R	11058583	11058652	11058583..11058652	CG6535-RB,	FBgn0045035,	tefu,	1	.
CG14578-RD	CCACTGCACACATGACGGAGCACTACAGCGAGTCATTCAACGCCTACTACAACTACAATGGAGGCCACA	69	.	.	.	.	.	CR14578-RE,CG1034-RD,CG1034-RE,CG1034-RF,CG1034-RG,	FBgn0260469,FBgn0000166,	CR14578,bcd,	2	.
CG10748-RA	GCCGCAGCTGAGGTTCTTATGGCCCATGGAACTTTTGATTCTCGTCGGCTCTTCGGTATTACGACTTTG	69	-	chr3L	12964921	12964990	12964921..12964990	CG10748-RA,	FBgn0036327,	CG10748,	1	.
CG12052-RU	GCATCCGGAGCAAATCAGTGATACATTCGCGGGTTCTTCGGGATCTAGCGATGGGGTCAGGGATAGA	67	-	chr2R	6398219	6398286	6398219..6398286	CG12052-RT,CG12052-RU,	FBgn0005630,	lola,	1	.
CG3702-RA	AGAGTGACGAGGATCAGGACTCGCTGAAGGAGACTCTGCTGGACACCAATATCTACCTGCTGGGC	65	-	chr2L	4225735	4225800	4225735..4225800	CG3702-RA,	FBgn0031590,	CG3702,	1	.
CG13605-RA	GGCTTTATGTGTTGGTGGAGTACATTTCGCAGTTCTACCGGGCAATGACACCCATTACCCAGTGGCTCC	69	-	chr3R	19936197	19936266	19936197..19936266	CG13605-RB,	FBgn0039150,	CG13605,	1	.
CG7480-RA	ACGAAAAGGTGCCCAAGACCTATGATTATGGAGACATTAGCGATCGCCTCAAGCTTAGGGAGCGTCTGC	69	+	chr2L	14360622	14360691	14360622..14360691	CG7480-RA,	FBgn0001970,	Pgant35A,	1	.
CG32280-RA	AGCCTGATTACGAGCACAAAAGTCGCTTGTGTGTCCATTTTGAAGAACAGGCCCTTTGATATTGCACAA	69	+	chr3L	3168786	3168855	3168786..3168855	CG32280-RA,CG32280-RB,CG32280-RC,	FBgn0052280,	CG32280,	1	.
CG14310-RB	TCGCACTCACACTTTGGTCGGCTATAATGACACAAGTACGCAGCACTACACACTCGAGACCCTTGCTGA	69	+	chr3R	14198642	14198711	14198642..14198711				0	no match
CG31353-RA	GCCAAGTTTTATGCAGGCAGTTGCCACTATTTGTTGGCTAGGCTAGAGAACTGTGGCACAACCTCGC	67	-	chr3R	17804562	17804629	17804562..17804629				0	no match
CG1458-RA	GAATTTAATAGCCAGTTAAATAAAAAAGGCGTTTCGAAATGGAGCCCATATCACATCTGGTGAAGTCCT	69	-	chr3R	25049030	25049099	25049030..25049099	CG1458-RA,	FBgn0062442,	CG1458,	1	.
CG5688-RA	TTGTGCACAGCCGATTCCATTGAGGCGTTGTACAAGCAGCATGTTGCCTACTTAAAGCGGGTAGCCTTC	69	-	chr3L	11987244	11987313	11987244..11987313	CG5688-RA,	FBgn0026432,	Grip163,	1	.
CG14932-RA	CGTCCCCACAGTGCTTTGGAGATTACCGAAATTACCGAGTTTCCGAAAATTCCAAAGAAAAACCCCACC	69	+	chr2L	11790486	11790555	11790486..11790555	CG14932-RB,CG14932-RC,	FBgn0032375,	CG14932,	1	.
CG3479-RA	GCCACCCGAGAAAATGGAGCAAAGTCTCTTCGTGATACCCTCCCATATGCTAAACAGTTCCCTCGTGCC	69	-	chr2L	14601265	14601334	14601265..14601334	CG3479-RD,CG3479-RF,	FBgn0003016,	osp,	1	.
CG30296-RA	CCATGAGTCCCAGATTTTGGTTGCCGACTCCCAGATCAAACGCGAAGAAGTCTACGACTCGGAGCTCA	68	+	chr2R	16911539	16911607	16911539..16911607	CG30296-RD,CG30296-RC,CG30296-RE,CG30296-RG,CG30296-RH,CG30296-RI,CG30296-RJ,CG30296-RK,CG30296-RL,CG30296-RM,CG30296-RN,CG30296-RO,CG30296-RP,CG30296-RQ,CG30296-RR,	FBgn0050296,	RIC-3,	1	.
CG18396-RA	GGACCATGCTGATCTGTAAAACAGCTGGAAAGATCTACTTGACGTCTGCCAAAAACATTTTGTGACAAC	69	+	chr3R	24119422	24119491	24119422..24119491	CG18396-RA,	FBgn0004171,	Mst98Cb,	1	.
CG7563-RB	GGTTGCCATGTTGGATGCTGATAAGTCTGGAAAGCTGGGATTCGAGGAGTTCGAGACTTTGCTCTCGGA	69	+	chr2R	15317376	15317445	15317376..15317445	CG7563-RB,CG7563-RC,	FBgn0012051,	CalpA,	1	.
CG32070-RA	GTGGTGCTGTTACTGTTGTTGGTGGTGCTGGCTACCGATCAGAGGCCTGGCACGAAGATCAAAGC	65	-	chr3L	10956872	10956937	10956872..10956937				0	no match
CG14489-RA	TGACCTGTGACCCATGTGATCATCTTGTCTTGTCCATTAGTCATTACAAGTGCCGCGTACTTAGCTGTT	69	+	chr2R	13735799	13735868	13735799..13735868	CG14489-RA,	FBgn0015522,	olf186-M,	1	.
CG10830-RA	AATGCCAAATACAAAATACCAAATGGTCACAAGGACTTCCAGAAGTACGATGGGAATACGACACATACG	69	-	chr3R	16720941	16721010	16720941..16721010	CG10830-RA,	FBgn0038839,	CG10830,	1	.
CG14794-RA	CGAAAGCATACGCCAATCGCCACTTTGAACACTGCCAGCTGCCAGCACAATAGCACAACAAGTAGACGA	69	-	chrX	1396166	1396235	1396166..1396235	CG33513-RC,CG33513-RF,	FBgn0053513,	Nmdar2,	1	.
CG14339-RA	ACCTAAACATCACCATTCCAACCAGTCGGGGCACCATGTTTCTGGAGGTCTTTAGAACATTCGCGCGG	68	+	chr2L	1111728	1111796	1111728..1111796	CG14339-RA,	FBgn0031301,	CG14339,	1	.
CG14921-RA	AGCCCGCATTGTGCTGGTTAAGAAAGAGAAGGGCTTATGGCCTGAGATGTTCCAGAAGCTGGACAAGGA	69	-	chr2L	11121205	11121274	11121205..11121274	CG14921-RA,	FBgn0032345,	CG14921,	1	.
CG3368-RA	TCTTGTGCGCGACACAGAACTGAGGCCAGCTATGAGCAAGTACTACAATGAGATTCTGCTGGTGGC	66	+	chr3R	23112274	23112340	23112274..23112340	CG3368-RA,	FBgn0039508,	CG3368,	1	.
CG32252-RA	GCGTTCAGAAGGAAGAGCCACTAAATAGCCTAGATTGGATCTGAATGAACTTCCTAAAGTGACCCGGCC	69	-	chr3L	4221777	4221846	4221777..4221846	CR32252-RB,	FBgn0052252,	CR32252,	1	.
CG32223-RA	ACCGCCTACGAGCACAATCTGGACCGCGTACATAATGTCTATCGAGAGAGCTTGGACTCGCGAACC	66	-	chr3L	20183961	20184027	20183961..20184027	CG42674-RE,	FBgn0261556,	CG42674,	1	.
CG17866-RA	GGCGGATGGTTGAGGAAAAACCAATGCCTTCAGGATCCACTACCGATGGAACTAATTTGTCCATTACCA	69	+	chrYHet	147988	148057	147988..148057	CG17866-RB,	FBgn0001313,	kl-2,	1	.
CG14818-RA	CGGAAAAACTCCGGGGAAAATTCCAGGGAAAATGTCACCCAAAAACAATCATGATCCCTCGTCGTCCG	68	-	chrX	1773486	1773554	1773486..1773554	CG14818-RA,	FBgn0026088,	CG14818,	1	.
CG33301-RA	GGACCGCGAGTACAACACCATGATTCTGGAGGATTTGGCACCGTACAAGTTCGTCAATGCGGATCGC	67	+	chr2L	10049974	10050041	10049974..10050041	CG33301-RA,	FBgn0053301,	CG33301,	1	.
CG17754-RA	GCGGACGTGATGGGCTAAAGACCCTGAACACCGTAGAGAGTTTGGACCTGAATACAATGGCCTGGG	66	+	chrX	9147423	9147489	9147423..9147489	CG17754-RC,CG17754-RD,CG17754-RA,	FBgn0030114,	CG17754,	1	.
CG3639-RA	CGGCACTGAGCAAGATATTCGACTACTTTGGACTACGCCTGGACTTTAAACTATGGGGGAGTTTGAGGA	69	+	chr2L	816176	816245	816176..816245	CG3639-RA,	FBgn0031282,	pex12,	1	.
CG31462-RA	ATCTACAAGAGCTACAAATCCGAGATTGATCTCAGCAAGAACCTGCACTATTTGGATGCCTACTT	65	-	chr3R	4212695	4212760	4212695..4212760	CG31462-RA,	FBgn0051462,	CG31462,	1	.
CG30055-RA	CCATTGTCACCCAGCCATGTGGTGGAAACGATGATCAGAACATCTGGGTAAGACACCCTGTTTGAGCCA	69	+	chr2R	8477074	8477143	8477074..8477143	CR30055-RB,CR30055-RC,	FBgn0050055,	CR30055,	1	.
CG14971-RA	GCCGGGCTCATCGCGGTAATAGAAGATCTGCACAACCACACTTCGAATGAGATAACTTGGGCCATTGCG	69	-	chr3L	3469251	3469320	3469251..3469320	CG14971-RA,	FBgn0035449,	CG14971,	1	.
CG6964-RD	ACAGCACACTTCACACCAGACACTCACTGACCAAGGCATCCAGAATCAAAAAGCAGAAACCAACTACAA	69	+	chr3L	8464300	8464369	8464300..8464369	CG6964-RA,CG6964-RC,CG6964-RD,CG6964-RE,CG6964-RF,CG6964-RG,CG6964-RH,	FBgn0010825,	Gug,	1	.
CG10738-RB	CGCTGCGTAGCTGACCAGTTGAAGAAGGGTCACAAGGTGGACCCCGAACACTACGAACAGGTTAG	65	+	chr3L	13457254	13457319	13457254..13457319	CG10738-RC,CG10738-RD,CG10738-RE,CG10738-RF,	FBgn0036368,	CG10738,	1	.
CG4722-RA	AATGTACACAAGTCTCAGCCCCATATAGTCTAGCATAGTCCTAGTTTAGATAGACGCAGCATAGCCACA	69	+	chr2L	9994824	9994893	9994824..9994893	CG4722-RA,	FBgn0000180,	bib,	1	.
CG10901-RA	GGGCGTGGTACGTATACATATGAGCCATGCTGCATTTTGGCCGTAATGAAAATGCACTGCTTTACTTGG	69	+	chr3R	4763674	4763743	4763674..4763743	CG10901-RC,CG10901-RA,	FBgn0003015,	osk,	1	.
CG10801-RA	TGTCAGGCGATCATTGCCATTGGACAGCCGGAATATCGAAGGTCGAGACTGGTTCGTCGCATGTTAAGG	69	+	chrX	3356113	3356182	3356113..3356182	CG10801-RA,	FBgn0029660,	CG10801,	1	.
CG7335-RA	GCGAAGAGCACGGACTCAATGGGAAAAAAGCCAGCCCAAAAAGATGCCCTATCTACCTCCTGATCCCC	68	-	chr3L	20125568	20125636	20125568..20125636	CG7335-RA,	FBgn0036941,	CG7335,	1	.
CG14690-RA	CTACCAGTAGCCTTTGAAATACTCCAAAATTGATGGTCTCTGTTTTTTCTCGAACAAAACGATAACTTT	69	-	chr3R	6561078	6561147	6561078..6561147	CG14690-RA,	FBgn0037828,	tomboy20,	1	.
CG14961-RA	AGCCCTACCTCAGGAACCACGTTGGACCCACTGTGTTGTATTCAAAGTCACAAACTCCCAGGACGTACT	69	+	chr3L	3332157	3332226	3332157..3332226	CG14961-RA,	FBgn0035439,	CG14961,	1	.
CG1162-RA	CGCGACATTTCCACACGGTTATCCTGTTATGACTTTTCCTTTGTTCCAACGTATTTTTAGCGAAT	65	-	chr3R	2580587	2580652	2580587..2580652				0	no match
CG13501-RA	GCACTGCCCAAATTGCTCAAAGAACTGGATAGTGATGTTAGGCTGACCCATTGGAAGGCAGTCGTATCG	69	-	chr2R	17947831	17947900	17947831..17947900	CG13501-RA,	FBgn0034684,	CG13501,	1	.
CG30286-RA	GCCCATCGGAAGCTGCAAACCACATCCTAAAGTCCATTCGCGTAACCAGAGTGAATTGGGGTGTGTG	67	-	chr2R	17423526	17423593	17423526..17423593	CG30286-RB,	FBgn0050286,	CG30286,	1	.
CG4158-RA	ACAAGTGCTATGCCACCTATGCAGGATTGGTAAAGCATCAACAAACGCACGCCTACGAAAGCACCGAGT	69	-	chr2L	15424479	15424548	15424479..15424548	CG4158-RA,	FBgn0001983,	wor,	1	.
CG31530-RA	ACAGGGAACCCAAAACATCACCTCGCAGTTCACCATCATTGACGGCATGGACAACAAGGGGTACAG	66	-	chr3R	577460	577526	577460..577526	CG31530-RA,	FBgn0051530,	CG31530,	1	.
CG7530-RA	CGAGGAGCGGAGATGGAATCCGGGACTCTAGTAGACTAAAGCTTAGTGTAAATAGTTTATGGGGCGCTC	69	-	chr3R	10550771	10550840	10550771..10550840	CG7530-RA,CG7530-RB,CG7530-RC,	FBgn0038256,	CG7530,	1	.
CG17462-RA	AACGAACTAGTCAGCCAAGGAGTAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGT	65	+	chr3R	20751604	20751669	20751604..20751669	CG17462-RA,	FBgn0039251,	Trf4-2,	1	.
CG12016-RA	CCAGCTGAGGGACAAGAAGGTCAATTTCCTCCTGGTCGAGGGATTCATGATCTTCAACCAGCCGGA	66	+	chr3L	3321277	3321343	3321277..3321343	CG42456-RA,CG12016-RA,CG12016-RB,	FBgn0259933,FBgn0035436,	CG42456,CG12016,	2	.
CG3355-RA	AAAAAACTCATTTCCTTGCCTCATTCCTAAGTTATTCTAAATTATTGAAAAAAGAAGTTCACAGCAA	67	+	chr2L	4652790	4652857	4652790..4652857	CG3355-RA,CG3355-RB,	FBgn0031619,	CG3355,	1	.
CG31349-RF	GTGGTGCATCCACCTACGACAGTGTGTCCAGCTACGACTCGTACAACAATACACAAATGGCCATGC	66	-	chr3R	4660139	4660205	4660139..4660205	CG43140-RN,CG43140-RF,CG43140-RB,CG43140-RC,CG43140-RA,CG43140-RI,CG43140-RG,CG43140-RJ,CG43140-RM,	FBgn0262614,	pyd,	1	.
CG17241-RA	GTGCCCTGATCATCTGCTTTAGTGGATACCGCTTGCAGCATGTGGGAATTCGCGATAATCCCGGC	65	+	chr3R	18813863	18813928	18813863..18813928	CG17241-RA,	FBgn0039033,	Or94a,	1	.
CG10919-RA	TCCACAGAAGTATTCAAAATAATAACTCATACACGTAATACCCGGCACTTCAATACAACATCCAA	65	+	chr3R	3583925	3583990	3583925..3583990	CG10919-RA,	FBgn0037514,	CG10919,	1	.
CG31638-RA	CAATGATCTTCGCCAGATCTTTGATGACTCGCAGGCAGGTTTGAGGAGCTCCCACAATGGCAGCG	65	+	chr2L	6495336	6495401	6495336..6495401	CG31638-RA,	FBgn0051638,	CG31638,	1	.
CG14540-RA	GGCACGGTAAACCCTAATGGCTATGGCATGTCCAAGTCGAAGGAGACATACCGAATGAAGCACCGCGAA	69	+	chr3R	21785635	21785704	21785635..21785704	CG14540-RA,	FBgn0039398,	CG14540,	1	.
CG6484-RA	ACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGCAGGAGACCCACTATGTTAGCCCTA	69	-	chr2R	13471190	13471259	13471190..13471259	CG6484-RA,	FBgn0034247,	CG6484,	1	.
CG1616-RA	GCCGCCAGAATTTCAGATCGGAAATTCACCTGCTGTTATGCGGTGATCCGGGTACTTCCAAGTCCCAG	68	-	chr2R	3385536	3385604	3385536..3385604	CG1616-RA,	FBgn0015929,	dpa,	1	.
CG17260-RA	GGACGCTACACCTACAGAGTAATCGCTGTTGTTCCGGACAGCTATCCCATGCAGAGTGTGGAGCT	65	+	chr2L	3038040	3038105	3038040..3038105	CG17260-RA,	FBgn0031498,	CG17260,	1	.
CG4825-RA	GGAGTATGGCGTCAATTGTTCGGACATCAGTTGGGATCGCGTTAAAGGCCACTTGGACGTCTTTGCCTG	69	-	chr3L	20517227	20517296	20517227..20517296	CG4825-RA,	FBgn0037010,	CG4825,	1	.
CG13330-RA	CGGAAGACTAGAGTATGTCAGGATCCTAGAAGTGTCTCGTCCGCTACCCGTTCACTTACTCCCCCGCC	68	+	chr2R	9404168	9404236	9404168..9404236	CG13330-RA,CG33528-RE	FBgn0033848,FBgn0260964	CG13330,Vmat	2	.
CG32304-RA	TCCAACGGGCTTTACCTTTGATGACGAGCTGCAGATTTGCCTGAACACAGGATCTGATGACGACGAGTT	69	+	chr3L	2268291	2268360	2268291..2268360	CG32304-RA,	FBgn0052304,	obst-I,	1	.
CG4587-RA	GGAACCAGACAGCTTTGTGTACAGTGTACCCTTTGGCTCGGGCTATGCCATTAAGTCGAACGCCACT	67	-	chr2L	15649204	15649271	15649204..15649271	CG4587-RD,CG4587-RB,CG4587-RC,	FBgn0028863,	CG4587,	1	.
CG5363-RA	GTTCACCCCGGTATTCCTGTCCCGTCGATATCTGGTCCATTGGATGCATATTCGCGGAGATGGCAAC	67	-	chr2L	10385196	10385263	10385196..10385263	CG5363-RA,	FBgn0004106,	cdc2,	1	.
CG6475-RA	CGAGGATGATCAGCTGCCCAATCTTCCGGACAACGTAAAGGTCGAAAAGTGGTTACCCCAGGCTGACAT	69	-	chr3R	17224098	17224167	17224098..17224167	CG6475-RC,	FBgn0038886,	CG6475,	1	.
CG5335-RA	CCAAGCGCGAAGAGCTACACTTCAGTGTGCGTTTCGATGAGAAGGCAGTAGTGCGCAATTCCATGAACA	69	+	chr2R	14510014	14510083	14510014..14510083	CG5335-RA,	FBgn0034365,	CG5335,	1	.
CG11314-RA	AAAATAAATTACCGTGATGTTTAAATGATGTGCAAGTTTCTTAAAATACAAGGAGCTATATTGGC	65	-	chr3R	26570350	26570415	26570350..26570415	CG11314-RA,	FBgn0039800,	Npc2g,	1	.
CG7899-RA	AACCAGATCGTTCGATGTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCG	65	-	chr3R	25817819	25817884	25817819..25817884	CG7899-RB,CG7899-RA,	FBgn0000032,	Acph-1,	1	.
CG17912-RA	GGATCTCAGGGATCACGAACGTCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGC	69	+	chr2L	16743981	16744050	16743981..16744050	CG17912-RA,CG17912-RB,	FBgn0032600,	CG17912,	1	.
CG31613-RA	AACTTGTGTGCCATTCATGCCAAGCGTGTCACCATAATGCCCAAAGACATCCAGTTAGCGCGACG	65	.	.	.	.	.	CR31754-RA,CG33833-RA,CG33806-RA,CG33839-RA,CG33827-RA,CG33854-RA,CG33824-RA,CG33818-RA,CG33830-RA,CG31613-RA,CG33863-RA,CG33815-RA,CG33866-RA,CG33836-RA,CG33803-RA,CG33851-RA,CG33809-RA,CG33821-RA,CG33845-RA,CG33857-RA,CG33848-RA,CG33860-RA,CG33842-RA,CG33812-RA,	FBgn0051754,FBgn0053833,FBgn0053806,FBgn0053839,FBgn0053827,FBgn0053854,FBgn0053824,FBgn0053818,FBgn0053830,FBgn0051613,FBgn0053863,FBgn0053815,FBgn0053866,FBgn0053836,FBgn0053803,FBgn0053851,FBgn0053809,FBgn0053821,FBgn0053845,FBgn0053857,FBgn0053848,FBgn0053860,FBgn0053842,FBgn0053812,	His-Psi:CR31754,His3:CG33833,His3:CG33806,His3:CG33839,His3:CG33827,His3:CG33854,His3:CG33824,His3:CG33818,His3:CG33830,His3:CG31613,His3:CG33863,His3:CG33815,His3:CG33866,His3:CG33836,His3:CG33803,His3:CG33851,His3:CG33809,His3:CG33821,His3:CG33845,His3:CG33857,His3:CG33848,His3:CG33860,His3:CG33842,His3:CG33812,	24	.
CG10877-RA	AGCAGTTGCGTAAGGTGAATCCCAAACTGATCTATTGCTCAATGACGGGTTATGGCTCTGTGGGACCGT	69	-	chr3R	16389162	16389231	16389162..16389231	CG10877-RA,	FBgn0038804,	CG10877,	1	.
CG10789-RA	CGGAGCCTGATGTCGCTTACCAAAGCATTGACTATCATCCCGAGGACTACATCGATTCCTTCACCGACT	69	-	chrX	3138076	3138145	3138076..3138145	CG10789-RA,	FBgn0010296,	ng4,	1	.
CG6745-RA	ACAGGCAATGGCTAAGGAGGACAATGAAAAGAAGGCGGTAGGAACCCAGGAGGAACAAATGGAGGTGG	68	+	chr3L	8505482	8505550	8505482..8505550	CG6745-RA,	FBgn0035901,	CG6745,	1	.
CG18314-RA	CCGTCGTCTGGATCGGCATATTGAATTCGTTTTGGAAAATTCTGATCATGACCAGTATGTCGCCGCAAT	69	-	chr3L	4369255	4369324	4369255..4369324	CG18314-RA,CG18314-RB,CG18314-RC,	FBgn0035538,	DopEcR,	1	.
CG6976-RA	GGAGCTCGGGTAAGAACCACTTCCACATTCGTTTTGGTAACATGATCGGAGCATCGAAGCTGCTGTGCA	69	+	chr2L	7689275	7689344	7689275..7689344	CG6976-RB,CG6976-RA,CG6976-RE,	FBgn0040299,	Myo28B1,	1	.
CG11130-RA	GGCTACTATCTGGACGCCCTAATAGCCTTGGGTCCATTTTGCAAGAGTCCGCTACAGTGCACCCTG	66	+	chrX	13651600	13651666	13651600..13651666	CG11130-RA,	FBgn0020909,	Rtc1,	1	.
CG3234-RB	CCATGAGCACGGTTAATCCCACAACCACTTTGAGCCTGAACATGCTAAACACCTTCATGGGAAGCCACA	69	-	chr2L	3495726	3495795	3495726..3495795	CG3234-RD,CG3234-RB,CG3234-RE,CG3234-RJ,CG3234-RK,CG3234-RG,	FBgn0014396,	tim,	1	.
CG17368-RA	ATGTCGCGCGACCAGCAAATCGATCATGGTTTCGGCATTTGCGTTAAAGGAGGCAAAGACTCAGGTG	67	-	chr3L	13883911	13883978	13883911..13883978				0	no match
CG33199-RA	TGGAACGGACCATGAAAACAAGCAATCTCGGCCTGTACGCTTTCCGTTTAACCTTCGGTCAGGCG	65	.	.	.	.	.	CG33199-RA,CG33199-RB,	FBgn0053199,	CG33199,	1	.
CG5729-RA	GCATGTGCCCCAATAAACTATTTCGTGTCCCGTTCTTGTCCACTGTACATTGTGCTATATGCCAAACCA	69	-	chr2R	14056346	14056415	14056346..14056415	CG5729-RA,CG5729-RB,	FBgn0027836,	Dgp-1,	1	.
CG11676-RA	ATTGCAGAAAGGACTCCCATCGCTCCGCGGATGATGACGGAAATGAGGAGGACTTCTACCTCGAG	65	+	chr3R	5812362	5812427	5812362..5812427				0	no match
CG4285-RA	CGGATGGACGGAGATGGATGAGGAAAGCTTGCTCGAAAACGGTTCCTGTTCCGCTTTTGGTTGTAATAG	69	+	chr3R	11082680	11082749	11082680..11082749	CG42404-RD,CG42404-RE,	FBgn0259823,	CG42404,	1	.
CG31177-RA	TGCCAAGGGAGCTTGCATTGTAAGGATGTGGCGAAATCTCATGGGAGCCGAAAACTTTGACACAGCC	67	+	chr3R	17585971	17586038	17585971..17586038	CG42335-RC,CG42335-RD,	FBgn0259237,	CG42335,	1	.
CG17048-RA	ATGGCCAGGTGTCCAGGCAGTTCCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATG	68	-	chr2R	9241358	9241576	9241358..9241397,9241547..9241576	CG17048-RA,CG17048-RB,	FBgn0033828,	CG17048,	1	.
CG4751-RA	TCATCATCCGTATAGATTTCGCCAGTCCTACGAGTGAATTTCCGCTTTTATTCACCTCACGAGCGCTGT	69	+	chr2L	11135753	11135822	11135753..11135822	CG4751-RA,	FBgn0032348,	CG4751,	1	.
CG2906-RA	AGGTGTATCACGATCGTCTGAGGATGGGGGATTACCAACATCTCCGCATACACTCCCTAAGAGCCGC	67	+	chr2R	3845063	3845130	3845063..3845130	CG2906-RE,CG2906-RD,	FBgn0033240,	CG2906,	1	.
CG7042-RA	GCGCGCTAATCGCTTTGGGTAACGGACGTATCGACGAGAGGTGCCTATATCAGATGCTCACCGTTCCCT	69	-	chr3L	183361	183430	183361..183430	CG34140-RA,CG34099-RA,CG34099-RB,	FBgn0083976,FBgn0083992,	CG34140,Mkp,	2	.
CG31224-RA	CGGCAAGAGCTCCACAACGAAGACCAACCACAACAAGCATCTGAAGATCCACCATTCGCGCGATC	65	-	chr3R	14476882	14476947	14476882..14476947	CG31224-RA,	FBgn0051224,	CG31224,	1	.
CG33061-RA	ACCGGTGGCGAGTCTTTTAATCAATAGATGTCAACACAACCAGATGGCATACCTGAAGTTGAGCA	65	+	chr3L	16323556	16323621	16323556..16323621	CG33061-RB,	FBgn0053061,	CG33061,	1	.
CG12442-RA	TCGAATTCGAGTTGGAAAAGATGGAAAGGGGCAGTTCTAATGGGGAAAGCGAAGAGGAAAGTCAGCGG	68	+	chr2R	8587884	8587952	8587884..8587952	CG12442-RA,CG12442-RB,	FBgn0033770,	CG12442,	1	.
CG33102-RA	ATACGAAGGCACAGGAGGTGATGGACAAGTTTCGCATACGTCACTGCAAGGAACGGGATCTGGCT	65	+	chr3R	22275899	22275964	22275899..22275964	CG33102-RA,	FBgn0042711,	Hex-t1,	1	.
CG32099-RA	CCACGACCAACCCATGGACAATTGGCATTTCGAGGAGCATTTACTGCAGGAGGACTACTGTGCGG	65	+	chr3L	12143122	12143187	12143122..12143187	CG32099-RA,	FBgn0052099,	eap,	1	.
CG6931-RA	GGTGTGTATGCTGTACGAATCTACCAGTTCCAACAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCT	69	+	chr3L	11984581	11984650	11984581..11984650	CG6931-RA,	FBgn0036236,	CG6931,	1	.
CG3532-RA	GCGCTTGGTTCCCGTGCTAAATACCATTCTCCGCCTGAGTCGCAACGAAATGGAAATGCTGAACTGTGT	69	+	chr3R	7840076	7840145	7840076..7840145	CG3532-RB,	FBgn0037979,	CG3532,	1	.
CG18478-RA	TGGGGCACTTTTCTGTCCAATGACCGAGGATCCCAAACAGTTCGAGCAAATTGGCATTGTTAACTGGGG	69	.	.	.	.	.	CG31827-RA,CG18478-RA,	FBgn0051827,FBgn0028517,	CG31827,CG18478,	2	.
CG10721-RA	TGGGAGCTAGTTTTCAGACACTAGTGGATCGCCTGGATCACATCAACAGCAGGGAGCATTGCATCCG	67	+	chr2L	20091891	20091958	20091891..20091958	CG10721-RA,	FBgn0032846,	CG10721,	1	.
CG11251-RA	TGTCTCCCACGTCCAGAGAAGCATCTCCAGAACCACATATTCCGTCAGCTCCAGACGAATCACCCAT	67	-	chr3L	13082816	13082883	13082816..13082883	CG11251-RA,	FBgn0036346,	CG11251,	1	.
CG7620-RA	ACTACTTCGATGTTTGTTTTCACTCTAGGATACCAAGTAATCCTGGCATTGTTAAATCCCTTGTGTTGT	69	+	chr3R	8857191	8857260	8857191..8857260	CG7620-RA,	FBgn0002354,	l(3)87Df,	1	.
CG14693-RA	CTGGAGATATGATGGGTGATGTGGAGCTCTTAGAGGGTATCAAGCGAACTCACACCTTCAGAGCAGCA	68	-	chr3R	6639976	6640044	6639976..6640044	CG14693-RC,CG14693-RD,	FBgn0037837,	CG14693,	1	.
CG5597-RA	TGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGTACAGAGACGACAAGTCCATATACCAGTGGATCT	69	+	chr2R	19775495	19775564	19775495..19775564	CG5597-RA,	FBgn0034920,	CG5597,	1	.
CG1505-RA	AGTTTCATTACGAAAACTTCTGATTATGGCATTTCAGTTTTATTTTTATCTAAGACAGTAGGGCAATTC	69	-	chrX	11879614	11879683	11879614..11879683	CG1505-RA,	FBgn0000808,	gd,	1	.
CG30017-RA	ACTCGCGTAAGATGCACGACCTTGACAATCTCTGGCCAAGAGTCTCGGCACAATTATCGTGTTTGGCTT	69	-	chr2R	6758243	6758312	6758243..6758312				0	no match
CG7607-RA	CCCACTTTTCAGCCATTACAAAATCCTTTGACACAGTAAAGCTGAGATGTAACTATAAACTACAATGCT	69	+	chr3L	11193586	11193655	11193586..11193655	CG7607-RA,	FBgn0036145,	CG7607,	1	.
CG5851-RA	GCTGGAGCTGTATGACAACCAGATCACCAAGATTGAGAATTTGGACGACTTGCCCCACCTGGAGGTGC	68	+	chr3R	13217910	13217978	13217910..13217978	CG5851-RA,	FBgn0028992,	sds22,	1	.
CR31480-RA	TTAGCTCAGTGGTAGAGCGTTGGTCTCGTAAACCAAAGGCCGTGAGTTCAACCCTCACAGGAGGC	65	.	.	.	.	.	CR31333-RA,CR31480-RA,CR31334-RA,	FBgn0051333,FBgn0051480,FBgn0051334,	tRNA:CR31333,tRNA:CR31480,tRNA:CR31334,	3	.
CR30508-RA	GTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTTGAGGGCGTGGGTTCGAATCCCACTTCTGAC	65	+	chr2R	9320189	9320298	9320189..9320210,9320254..9320298	CR30508-RA,	FBgn0011910,	tRNA:L3:49Fb,	1	.
CG10898-RA	CCCGGGAAGTTTTCGAAGAGACTGGTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCC	65	+	chr3R	7384538	7384603	7384538..7384603	CG10898-RA,	FBgn0037911,	CG10898,	1	.
CG17389-RA	GTTGCAGAGCCTGGACAGCTTTTACTCAGCAATCAACACCAAGCTGAACTCGGGCCAGCATTCGG	65	+	chr2R	10337007	10337319	10337007..10337036,10337283..10337319				0	no match
CG32711-RA	TCCTTAGCTGCAGCGACATTAGTTTAAATTTCAAGCCGGCTATCGCATGGTGATTCCACCTGCACG	66	-	chrX	8302714	8302780	8302714..8302780	CG32711-RC,CG32711-RD,CG32711-RB,CG32711-RA,	FBgn0262976,	lawc,	1	.
CG4144-RB	AAAGAGTGAAACCAGGGTGATCATAAACACCCGGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCAT	69	-	chr3L	18667827	18667896	18667827..18667896	CG4144-RB,CG4144-RA,CG4144-RD,CG4144-RC,	FBgn0040322,	GNBP2,	1	.
CG10841-RA	TGAGCGCGGTCTATCGAACATGGGAGTGGGAAAATATCTGACCCAAAGGGAAATGTCCATTCTGCTGGA	69	+	chr3R	9459045	9459114	9459045..9459114	CG10841-RA,	FBgn0038163,	CG10841,	1	.
CG6375-RB	GCAAGTCGATTGGATTGTGCAGTACGATCCTCCAGATGATCCACGCGAGTATATTCACAGGGTGGGCCG	69	+	chr3R	17863382	17863451	17863382..17863451	CG6375-RA,CG6375-RB,	FBgn0025140,	pit,	1	.
CG2937-RA	GCCGCCAAAATGGCCATACCAACGATTGGCATAGTGGACAGCAATTGCAATCCCAACCTGATCACCTAT	69	-	chr2L	4849667	4849736	4849667..4849736	CG2937-RA,	FBgn0031639,	mRpS2,	1	.
CG13569-RB	GCCCAGGGAGAAGCTCAACCTGAAGGAGATATATTCGAAAGCGTTCACACCGATGTTCGCCGAGTACCA	69	-	chr2R	20011307	20011376	20011307..20011376	CG13569-RA,CG13569-RB,	FBgn0034979,	CG13569,	1	.
CG4793-RC	TGCACCTATAAAATTGGCCCTCCATAATCCCATAAACACCTCTCAACTGGAACCATTTCCGGGGGTGGA	69	.	.	.	.	.				0	no match
CG6425-RA	ACCAGCCCCTGAATACAATCAGCTTCCCTTCAGCGAGTACCAATTGTGATGAGCAAAGTTAGAGTTTAA	69	-	chr3R	22541657	22541726	22541657..22541726	CG6425-RA,	FBgn0039449,	CG6425,	1	.
CG17985-RA	GCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGCACATCGGGTTATTCGCATTCCGGTTACAGT	69	-	chr2R	3542242	3542311	3542242..3542311	CG17985-RA,	FBgn0033199,	CG17985,	1	.
CG18507-RA	CGATGGAGACGCTGGTAAACGACTACCGCTTCACCGTGTACAACATCTGCTACAAGCGCATCCTGG	66	+	chr2L	13668888	13668954	13668888..13668954	CG18507-RA,CG18507-RB,	FBgn0028527,	CG18507,	1	.
CG32217-RA	CCTGCTGGGACTACTTCGATGAGACCATCCGCAGATTCCCATGTAAAAAGGCAAAACAAGCAAGAAACT	69	-	chr3L	19884541	19884610	19884541..19884610	CG32217-RA,CG32217-RB,	FBgn0014037,	Su(Tpl),Su(Tpl),	1	.
CG32829-RA	ACAAGAAGGGTCACAAGGAATTAGAATACCACAAGAAGTTCAAAAAGGACGAGTACATCAAGGAG	65	-	chr2L	6915982	6916047	6915982..6916047	CG32829-RA,	FBgn0052829,	CG32829,	1	.
CG14888-RA	GCTGGGCTATGCGGAGATAGTTGCTGTTAAGGACTTGCAAGAAGCAGGCGTCAATGTATCCGCTTCCAC	69	+	chr3R	12376620	12377373	12376620..12376651,12377335..12377373	CG42243-RC,CG42243-RB,CG42243-RD,CG42342-RF,CG42342-RG,CG42342-RH,CG42342-RI,	FBgn0259244,	CG42342,	1	.
CG2206-RA	CCACCCGCAGTGAAGGCTGCTTTAAGGATCTCTACTGTTCCCGTCAGCCGAAATGTAGTGGTCGTCTG	68	-	chrX	7836807	7836875	7836807..7836875	CG2206-RA,CG2206-RB,	FBgn0027280,	l(1)G0193,l(1)G0193,	1	.
CG3456-RA	CGACACTTGGTTAGATTAAGTCCTAGACCTAGGCCAGCCATGTACCGAGGTATGCGTGTATGCCGCAGC	69	+	chrX	2099071	2099140	2099071..2099140	CG3456-RA,	FBgn0023549,	Mct1,	1	.
CG3669-RA	CCTGGACGGTGTTCTCCCAGGTTCTGCCCGTACCCTATTCGTCGGTGTCGAAATTCTGGAAACTG	65	+	chr3R	27085572	27085637	27085572..27085637	CG3669-RB,	FBgn0039838,	CG3669,	1	.
CG7013-RA	GCTCAAGCACAGTCGAAGTAATAACAAAATGAAGACGTGGTACATGGTGGTAGTGATCGGCTTCCTGGC	69	+	chr3R	12175204	12175273	12175204..12175273	CG7013-RA,	FBgn0027095,	Manf,	1	.
CG2072-RA	CGAGAGGAGTTCCGCGATGTGTGCTACATGCTGCTAGGCTATAGGATCGATCGAATCGGTGCCAACAG	68	-	chr2R	5176874	5176942	5176874..5176942	CG2072-RA,	FBgn0026326,	Mad1,	1	.
CG11073-RA	CCAACGACTTGGAGCCACCATTTGAGCCCTTCGTAGATCTGGGAAACATTCAGCTGACACCACCA	65	-	chr2R	17980469	17980534	17980469..17980534	CG11073-RA,	FBgn0034693,	CG11073,	1	.
CG31044-RA	GCACGGCCATGAAGCTACTCCTCCCACACGATTTGCTTCACGCTCATTTAAATGCCAACGCACCG	65	+	chr3R	25044280	25044345	25044280..25044345	CG31044-RA,CR31044-RB,CR31044-RC,	FBgn0051044,	CR31044,	1	.
CG6947-RA	AGCGCTCTGGACTTCAATACCTTCCCTGTTTCGAGTGATCCCTCCGGTTTTTGCTACTGCCTCGACTC	68	+	chr3L	11972351	11972419	11972351..11972419	CG6947-RA,	FBgn0036233,	CG6947,	1	.
CG13761-RB	GGACATGGAATGCCTGGACTGGTCGAAAATCTTCATCAGCTACATCGACCTGCTCAATACGCCGGAGC	68	-	chrX	2501540	2501608	2501540..2501608	CG13761-RB,	FBgn0011566,	Bzd,	1	.
CG1339-RA	CCGTCATGCTGGATTCCTTGTGGTACAAGCCCTACTTCCTCTCGTCCATCTTCCTCTACTGGGTGCTG	68	-	chr2R	3547514	3547582	3547514..3547582	CG1339-RA,	FBgn0033202,	Gr43b,	1	.
CG4088-RB	GCTGACCCACGAGGATATGGAAACCATCAGAAGGCTCCCATCGTTTCGTCCGTACGTCGAGCAGATC	67	-	chr2R	9091484	9091551	9091484..9091551	CG4088-RA,CG34315-RB,	FBgn0005654,FBgn0085344,	lat,CG34315,	2	.
CG4306-RA	CCTAAGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGTCTCGTTAAAGGCGCT	69	-	chr3L	18455441	18455510	18455441..18455510	CG4306-RA,	FBgn0036787,	CG4306,	1	.
CG1776-RA	GCCTGGCATCCTTGTAGCGGATGACCAGCCCTATTAACCACTTTACACTGTGATAAAGACAGCCATTGA	69	-	chr2R	5606160	5606229	5606160..5606229	CG42347-RB,	FBgn0259678,	CG42347,	1	.
CG11208-RA	GACAGCGCCTTTGGATTCTCGGGCATGGAAATTGAGACTATGGTGCGCTATAAGCTGCCCGTCAC	65	-	chr2R	16130767	16130832	16130767..16130832	CG11208-RA,	FBgn0034488,	CG11208,	1	.
CG32647-RA	AATCGGAATCTTGCCCGGATTGCATAGAGCGTACTGGGAGTGAGAGAGTGGTTCGTCACACTTGCA	66	-	chrX	12678825	12678891	12678825..12678891	CG32647-RA,	FBgn0052647,	CG32647,	1	.
CG17840-RA	CAAGATTATGCGTGGCATTACCCTGCGTCCACTCAGTGACTACGGCACCGACTCCTATCTCAGCG	65	+	chr2L	4467738	4467803	4467738..4467803	CG17840-RA,	FBgn0031611,	CG17840,	1	.
CG17673-RA	CAAAGTTTCCAATTCCAAGCCCCAATCCTCGTGATAAGTGGTGCCGTCTTAATTTGGGGCCCGCC	65	+	chr3L	13294822	13294952	13294822..13294852,13294917..13294952	CG17673-RA,	FBgn0003034,	Acp70A,	1	.
CG31175-RA	TGCAAGGAGTACCCGATCGTCGGCTTCCGCTACAGATGCCTCAAGTGCTTCAACTTCGACATGTG	65	+	chr3R	15417622	15417687	15417622..15417687	CG34157-RA,CG34157-RC,CG34157-RB,CG34157-RD,CG34157-RE,CG34157-RF,CG34157-RG,CG34157-RH,	FBgn0260003,	Dys,	1	.
CG14305-RC	ATCATTCGCTTGATGCCATTACCAAATCACCTAGTTGCAAACTCTCGGAAAACTACACTACACGCACGC	69	+	chr3R	14424601	14424670	14424601..14424670	CG14305-RC,	FBgn0038630,	CG14305,	1	.
CG17928-RA	CCTGGTCCTTTCCCTGACCAAAAGAAACGTTCTGTGCTGGGATGATCTCATTGGCTTCAGTCTGCCCAT	69	+	chr2L	16792809	16792878	16792809..16792878	CG17928-RA,	FBgn0032603,	CG17928,	1	.
CG3597-RA	CTCCTGAAAAACGACGTCATTGGGGAGGTAACCCAGGTTAAGGTACAGCACGGTTTTCGCCTGGC	65	-	chr2L	2370879	2370944	2370879..2370944	CG3597-RA,	FBgn0031417,	CG3597,	1	.
CG5348-RA	GGGAACACTGTGGCCTACGTAAGAAGTTTGGTGGGCAATCGCTCTGAACACCACATGGAAGAATATGGT	69	+	chr2R	12656353	12656422	12656353..12656422	CG5348-RB,CG5348-RC,	FBgn0034156,	CG5348,	1	.
CG17818-RA	GACCAAAGTGGAGGACTTCATTCAGCGCGGAATTCGGGAGATTCTACTACTGGGACACCGGCAGG	65	-	chr2R	13583893	13583958	13583893..13583958	CG17818-RA,	FBgn0027872,	rdgBbeta,	1	.
CG1832-RA	CCACCCTGCTTAGCTTCAGTTTATCGAGCGTTACTATGATCATCTGCCTCCACCTATGCTAGCCCCAGA	69	-	chr2L	22166428	22166497	22166428..22166497	CG1832-RA,CG1832-RB,	FBgn0032979,	CG1832,	1	.
CG13431-RA	GGCGAAACCTGATTAGAATCGAAGGTCCAGTTCGCATTCAATACACTACTAGGGAGCAGTACAAGCGGA	69	-	chr2R	16447746	16447873	16447746..16447799,16447857..16447873	CG13431-RA,	FBgn0034521,	Mgat1,	1	.
CG5700-RB	AGGTTGCTACTTACAGGGAAGCAAACAGGGAACTCTTCAATACCATCAGTCAGTTTGGCAACAACGCAA	69	-	chr3L	11953367	11953436	11953367..11953436	CG5700-RB,	FBgn0028573,	prc,	1	.
CG31305-RA	CGACGGCCCGCATTGTTCGTTAACCTTGAGCACGACTTTTGACGTTACAGCGGAACGGAATCTGC	65	-	chr3R	7390636	7390701	7390636..7390701	CG6783-RA,	FBgn0037913,	fabp,	1	.
CG9752-RA	TTTCCATCCTAAAACGAGCGCAAATCCTAGTGGGCGATGTGTGGTCCTGCTACAGAGGTCAGGGA	65	-	chr2R	17182296	17182361	17182296..17182361	CG9752-RA,	FBgn0034614,	CG9752,	1	.
CG3715-RA	TGGTCCGAACCAAAGATCGCATCTTCGACAGCATTAGCCATCTGATCAACTACCACTGGGCACACGC	67	+	chr3L	9421364	9421431	9421364..9421431	CG3715-RA,	FBgn0015296,	Shc,	1	.
CG6919-RA	TGCGCAGTGCACAGCAAGTGTTCTCCAGAAAACCAGATTGCCAGCTTACAAATACAAATCACTCGATAA	69	+	chr3R	18342680	18342749	18342680..18342749	CG6919-RA,CG6919-RB,	FBgn0038980,	oa2,	1	.
CG18493-RA	AGCTCTGGCTCAAGGAATCAACCTTTTGGCACCAAGTTCCCTGCCACACTTTACATCAATCTATGCGGT	69	+	chr3R	15217395	15217464	15217395..15217464	CG18493-RA,	FBgn0038701,	CG18493,	1	.
CG4205-RA	CCAAGCCACATTAACATTATTGTTATATCCCGCATTATTAATAATATATAACGACTGTTGAATTACCAT	69	-	chr3L	9363395	9363464	9363395..9363464	CG4205-RA,CG4205-RB,	FBgn0011769,	Fdxh,	1	.
CG32355-RA	TGGGCAGTCCCATCCTGGTTTTGTTATCCTTTGGAGCGGTATTGCATTTTGGAGCATCGAATCTGGCCA	69	+	chr3L	8592015	8592084	8592015..8592084	CG43078-RG,CG43078-RH,CG43078-RI,CG43078-RJ,	FBgn0262508,	CG43078,	1	.
CG33308-RA	CCAGTCGCGCCATTATCTCACAAACGATCCCAAAGAGTTGAGTGCCCATCTTGTTGGTCCACCAA	65	+	chr2L	14802883	14802948	14802883..14802948	CG33308-RA,	FBgn0250834,	CG33308,	1	.
CG5290-RA	CCAAACGCCACTGAAGAAGGCCGAGAAACTGGTAAAATCGTATCGTGCGTACACACCGAAGCATTTGGG	69	-	chr3L	17903137	17903206	17903137..17903206	CG5290-RA,	FBgn0036772,	CG5290,	1	.
CG17838-RD	CCGTCCAGGGATCCATAGATCTGGCAGACGATCCTTTTTATTACACTGCCCCATTTATCGCCGCTACCC	69	+	chr3R	16630891	16630960	16630891..16630960	CG17838-RD,	FBgn0038826,	CG17838,	1	.
CG8034-RA	CGTGGATCCGCACTGAGCAACTTCACCCTAACCGTATCCGAATATTGCTCACTGGAGAAGCTGCC	65	-	chrX	19177099	19177164	19177099..19177164	CG8034-RA,CG8034-RB,	FBgn0031011,	CG8034,	1	.
CG4757-RA	AAGCTGGAGTACCCGAAATCACTTAAGGGTATGGGTGAACTCTTGAGCGACGCCCTGATTGGAGTGTCC	69	+	chr3R	6988184	6988253	6988184..6988253	CG4757-RA,	FBgn0027584,	CG4757,	1	.
CG10191-RA	TCGCTGGCCTATCAGCTCTCGGAAGAAAACTTTCAGGTGCTCGACAGTAAACATTCGACGCAGCCG	66	-	chr3L	13381792	13381858	13381792..13381858	CG10191-RA,	FBgn0036354,	Poc1,	1	.
CG11963-RA	CCAGACCGCTGAAGAACTTTCAAGCAAAATGATCGATCAGCTTCTGGTCACCAAGCAAACCGGAGCA	67	+	chr3R	4766423	4766490	4766423..4766490	CG11963-RA,CG11963-RB,CG11963-RE,CG11963-RF,CG11963-RC,CG11963-RD,	FBgn0037643,	skap,	1	.
CG7463-RA	AGTACGGTGGACAGACTGGAAATTGAAGGCAAAAGCGAATTAGCAAGCAAACCAATTAACAATAGCATT	69	+	chr3L	15514418	15514487	15514418..15514487	CG7463-RA,	FBgn0036504,	yellow-k,	1	.
CG5740-RA	TGAGCGGTCAAAACTTTCTATATACATAGATCTTCCAATTTTGTGGCTGTATTCTTCGAGATCCCCAGG	69	+	chr3R	17958809	17958878	17958809..17958878	CG42390-RB,CG42390-RC,CG42390-RD,	FBgn0259736,	CG42390,	1	.
CG6339-RA	CCCACCACGAACTTGGATCGCGCCAATATAAACTCGCTATGTGAAGCCCTGAATTGCATCGTGGAGGA	68	+	chr2R	18312722	18312790	18312722..18312790	CG6339-RD,CG6339-RE,	FBgn0034728,	rad50,	1	.
CG17190-RA	ACTCCAGTGATTCTGGCACCAAGAATGGAATGCTGCATGTGACCAGCTTTGTGAACCAGAAGCCCAAG	68	-	chr3R	15838189	15838257	15838189..15838257	CG17190-RA,CG17190-RB,	FBgn0038761,	CG17190,	1	.
CG1442-RA	AGGCCTGCGATCACTGCGATCAGATTTGTGGGGCTTTTGTCAGGATTCGCAAAAATATCAACAAAATCT	69	-	chr3R	24852251	24852320	24852251..24852320	CG1442-RA,CG1442-RB,CG1442-RC,	FBgn0039622,	eIF4E-6,	1	.
CG30097-RA	CCATGGCGAAAAATCACGAACGTCCTGCAGTTTTTCCCCTCTCGAATCCAACTGCCAACTCGGAATGC	68	-	chr2R	12303224	12303292	12303224..12303292	CG7964-RD,CG7969-RA,CG7969-RC,CG7969-RD,CG7969-RE,	FBgn0029154,FBgn0029153,	Menl-1,Menl-2,	2	.
CG11207-RA	TCGACGATATGCGCGAAAAGATCCATGTGCTGTGGGACAGACTCCAGGAGACAGACGAGTATGCCAT	67	-	chrX	10747861	10747928	10747861..10747928	CG11207-RA,	FBgn0030241,	feo,	1	.
CG10591-RA	GGTGCAGATCGATCGACCGCAGAATCTGCCCAGTGAACTGTTCGATACACCGGTGAACCAAGGTTC	66	-	chr3L	5592154	5592220	5592154..5592220	CG10591-RA,	FBgn0035621,	CG10591,	1	.
CG14999-RA	GCAAGCGCATCAACATCGATGAGCATTTGAAGCTGGACTTTATCCGTGAGATCGGAATCACCCACATGA	69	-	chr3L	4135015	4135084	4135015..4135084	CG14999-RA,	FBgn0260985,	RfC4,	1	.
CG18869-RA	AGCCCAAAATTTCTTCGTGGCCAATTCCCTAGATGTCCTGACCGTGCCTCTCATTGTTCTCCTGGC	66	+	chr3L	4061526	4061592	4061526..4061592	CG18869-RA,	FBgn0042179,	CG18869,	1	.
CG10824-RA	CGGGGGAATACTTTCACGGAATAGCCTGCATGTATCGCTTGCCCGAAAAAGAGGGTGTGGACTCCTC	67	-	chr3R	16985334	16985401	16985334..16985401	CG10824-RA,	FBgn0038865,	CG10824,	1	.
CG31992-RD	TGCAGCACTTACCACAAACTCCTTCCTCTACAAGCTCTAGTGGAACTAGTGGTGGCAACGTCGGAG	66	-	chr4	671385	671451	671385..671451	CG31992-RD,CG31992-RG,CG31992-RH,CG31992-RE,CG31992-RB,CG31992-RF,CG31992-RC,CG31992-RA,	FBgn0051992,	gw,	1	.
CG10121-RB	TCTGATTGGATTGGCTCGCGATGAGAGGGATCCGAAACTGGAGTTCTGGTCCTGCACCTACCAATG	66	-	chr3L	6683345	6683411	6683345..6683411	CG10121-RC,CG10121-RD,CG10121-RA,CG10121-RB,	FBgn0035710,	SP1173,	1	.
CG1851-RA	CGCCTGGCTCTCAATCTCAGTGCACCCTACATTGTGAGGAAAAATCACCAGGCTATGATGAAGCTGG	67	-	chr2R	3131541	3131608	3131541..3131608	CG1851-RA,	FBgn0026602,	Ady43A,	1	.
CG32246-RA	CCGTCATCTACTGGCCAACCATGGGTTTCCTGGACACTACCGAATTAGGCGGAGTGACCATTGGATGTT	69	+	chr3L	4621895	4621964	4621895..4621964	CG32246-RB,	FBgn0052246,	CG32246,	1	.
CG15295-RA	GCGGCTGCAGTTCAAGAACGATGTGGAGTTCGTTGCCTACCTTTTGAACCTGGCGGATAACGATACGG	68	-	chrX	10510917	10510985	10510917..10510985	CG43347-RB,CG43347-RC,	FBgn0263072,	CG43347,	1	.
CG3572-RC	ACACACTCAGAACCGGAGAAAATAGTAGTTTTCACCCCAAAGCAACGATTCAGATGTAGACTTGACTGT	69	-	chr2R	2863628	2863697	2863628..2863697	CG3572-RC,CG3572-RB,	FBgn0022960,	vimar,	1	.
CG3522-RB	AGGCTCTGATGGAAGATCTGTTCTATCGCATTGAAGACTGTCCCAAGTGGAATCCTGCTCTTTTGGAGT	69	+	chr2R	20463945	20464014	20463945..20464014	CG3522-RB,CG3522-RA,CG3522-RC,	FBgn0035028,	Start1,	1	.
CG6391-RA	CATGCACACCACACTTAACTGCGAGACTAACACTAACCCCAAAACTAAACCCATACCGAGAACCAACCA	69	-	chr3L	10889116	10889185	10889116..10889185	CG6391-RA,CG6391-RB,CG6391-RC,	FBgn0036111,	Aps,	1	.
CG31923-RA	GCAAAAGTTTCGTTTGGGATTTCGAAAATAGTCACTGCCTGCTTTTGACCATCGATTTGCGCCGG	65	+	chr2L	930733	930798	930733..930798				0	no match
CG11378-RA	ACGCAGATCACCACCGCTAATATCGTTCAGTCCGTCTTCCGTTTCGTGAAGAACGAGACCGACTG	65	+	chrX	1066411	1066476	1066411..1066476	CG11378-RA,	FBgn0040364,	CG11378,	1	.
CG17645-RA	AGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCGCGCTACAAGGACCAACTGAAGCCG	65	-	chr3R	8057841	8057906	8057841..8057906	CG17645-RA,	FBgn0011270,	Pglym87,	1	.
CG17746-RA	ACGATGCGTGTATATGCCTTGTCTAACTATTTAATGTATGATTTACTATGCTTTGTGATGCCCGAGC	67	-	chr3L	3236946	3237013	3236946..3237013	CG17746-RA,CG17746-RB,	FBgn0035425,	CG17746,	1	.
CG14897-RB	AGCGCTTCCCTAGAGGATCCTCTGACAAGCACCACCTACAAAGCTACCATGCATGCCAATCCCAATCTT	69	-	chr3R	12291439	12291508	12291439..12291508	CG42232-RB,	FBgn0250754,	CG42232,	1	.
CG4122-RC	AGTGGCTTGGTGCAGAACGATAAAGGACAACCATTGAGGGAGGCCTATGTCCGATTGTTGGAGCACG	67	+	chrX	401064	401131	401064..401131	CG4122-RD,CG4122-RC,CG4122-RB,CG4122-RG,CG4122-RH,CG4122-RI,	FBgn0004648,	svr,	1	.
CG1467-RA	AAACTGGAAAAAATCTGATTGAGTTTTCAGCGGACTTGGATCAATCCTTCCAATCCCCAAGAAATCGGG	69	-	chrX	20264683	20264752	20264683..20264752	CG1467-RA,	FBgn0031106,	Syx16,	1	.
CG1076-RA	CAATCTGGCCGTTCCCACTGTGCTGGAGATTCCCTCGAAACAGCATCCCTACGATTCCTCCAGGG	65	+	chr3R	1948813	1948878	1948813..1948878	CG1076-RA,	FBgn0037402,	Vha14-2,	1	.
CG7595-RA	AAACCACACAGATCTTCCACAAGGTCTACTTCCCGGACGACACAGACGAGGCCTTCGAAGTGGAC	65	-	chr2L	15046500	15046565	15046500..15046565	CG7595-RA,CG7595-RB,	FBgn0000317,	ck,	1	.
CG3358-RA	GGCCATGAAATATATTGGTAACTTGAGAGAAATTAACTCCTGCAGGCTTGACTAGCTAACACCTG	65	+	chr2R	2810905	2810970	2810905..2810970				0	no match
CG5241-RA	GGCCAAGTTCCAGTTTAATCACTACAAAAGCAAGTACGACCTCGTGGTCAACAGCAGATTGGGCAAG	67	-	chr3L	16079951	16080018	16079951..16080018	CG5241-RA,	FBgn0036564,	Taspase1,	1	.
CG7935-RA	CAATGAGTCGGGCTTCGAAGTGAAAGCCGAAATCAAGGACGACGATGCTGACTCGGACGGTGACG	65	+	chr3L	8113665	8113730	8113665..8113730	CG7935-RA,	FBgn0026252,	msk,	1	.
CG3006-RA	CGGACTTGTCGCAAACTGCAGGAGTTAAGAACATCAAGCCTGTGATGACCAAATTGCACAACGAAAGCA	69	+	chr2R	19851910	19851979	19851910..19851979	CG3006-RA,	FBgn0034943,	Fmo-1,	1	.
CG17967-RA	TCATCAGAATGCCAGTTAATAGCTGCCTTACAAAATAATATATTTTACACACCTTTTAATGGAATAGCT	69	+	chr2R	8086765	8086834	8086765..8086834				0	no match
CG3399-RA	ATCTCTTTTTGGAGACCATGCGCTTCTACCACTTCTCACCCAAAGCCTGCACCCTAACGTTGGCC	65	-	chr2L	3873116	3873181	3873116..3873181	CG3399-RD,CG3399-RB,CG3399-RA,CG3399-RE,CG3399-RF,CG3399-RG,CG3399-RH,CG3399-RI,CG3399-RJ,	FBgn0000256,	capu,	1	.
CG3588-RA	CGGTGCCAATGCGAACAGCAATGCCTTTGGTGGCTACGATGGATTCGGATTCTTCGGACGTTAGTTTTA	69	+	chrX	2817349	2817418	2817349..2817418	CG3588-RF,CG3588-RG,CG3588-RH,	FBgn0025643,	CG3588,	1	.
CG13613-RA	CCCTGCATCCTTTCGCTGAGGACCACTTCTATGGAATGGTCACCCAAGTTATAACCTTCCTGCTCACGT	69	+	chr3R	20191711	20191780	20191711..20191780				0	no match
CG32664-RA	CGGTGAAGTTGGTAAGGGTTCAGTTAGCCAGGTGCGAGTCCACTTTGCGATCTACGCCTTTGTGCTG	67	-	chrX	11309032	11309099	11309032..11309099	CG32664-RA,	FBgn0045502,	Gr10a,	1	.
CG9930-RA	TATCCATGGTTGCTCAGCCGACACGGACGCATTTTTCCACGATTCCCAGGCAATTTCCTGTTCCA	65	.	.	.	.	.	CG9930-RA,	FBgn0008646,	E5,	1	.
CG11522-RB	CAAAAAGGGCAAGAAGCACCCCGTCAACTCCTACCTGAAGGGCGGTATCCTGCGTTACTCCAAGG	65	-	chr3R	27421774	27421839	27421774..27421839	CG11522-RA,CG11522-RB,	FBgn0039857,	RpL6,	1	.
CG14724-RA	GCCCGAATTGGCCCTGAAGTCCGTGTACGATGCCTAAGCGGAGAACACTAGTTTAAAAACACAGAACAC	69	+	chr3R	7645846	7645915	7645846..7645915	CG14724-RA,CG14724-RB,	FBgn0019624,	CoVa,	1	.
CG18581-RA	GCCAACTGGAGAGGAAACCGAGGAACCTTCTGGAGAGGAAACTCACAGTCCTACGGGAGAGGAAACC	67	-	chr3L	15042990	15043057	15042990..15043057	CG18581-RA,	FBgn0036466,	CG18581,	1	.
CG5276-RA	CGAGAGTGGAACCTGGTCAGAGGAAAGGAATCGCTGGTTTTTCCTGCCTAGGCGGTGTTCGAAAGAGAA	69	+	chr3R	7258593	7258662	7258593..7258662	CG5276-RA,	FBgn0037900,	CG5276,	1	.
CG31126-RA	GGTCGGAGTCCCACTTCCGTGTGTTCGTCGTCTCGGAGAAGTTCAACGATCTGACGCTCATCAAGC	66	.	.	.	.	.	CG31126-RA,	FBgn0051126,	CG31126,	1	.
CG11173-RA	CAAAATTCGACATTTTGGAAGTTTCCCTCGCCACAAGAAATGGCCCATAACTACCTGCAGCCAGT	65	-	chr2R	19732143	19732208	19732143..19732208	CG11173-RA,	FBgn0034913,	usnp,	1	.
CG7577-RA	TCTTCAGGGTGGATGTGCACTACCAAGTGGAGACCACACCTTTGTATCGCACAAGCCTGGAGTTTACCA	69	-	chr3R	25492871	25492940	25492871..25492940	CG7577-RA,	FBgn0039676,	ppk20,	1	.
CG6262-RD	GGAGTGTGTGGCAAGCATCAAGAGTCCTGTGGTCCGAGAGGTTATGTACACCGAACTCAAGTCGGCTG	68	+	chr2R	12248343	12248411	12248343..12248411	CG6262-RA,CG6262-RD,CG6262-RB,	FBgn0034121,	CG6262,	1	.
CG32505-RE	TCTCCCAGTTCAACCGCACGAACGATATCGACATGATTTGCCGTGCACACCAGTTGGTAATGGAGGG	67	-	chrX	20293148	20293215	20293148..20293215	CG32505-RA,CG32505-RE,	FBgn0023177,	Pp4-19C,	1	.
CG4845-RA	CGCTGTACGCCTTCCTTCTGTCCGTGTTGAACGACAAGCTGCAGGTAAGCTCAAAGACCAAGACCAAGA	69	+	chr3R	15851455	15851524	15851455..15851524	CG4845-RA,	FBgn0243511,	psidin,	1	.
CG10733-RC	TGGCAAGCTGGTCAACATCTATATCACGGTGGTGAAGTACGATGCATGGGACAAGTACGCCAAGGAGAT	69	+	chr3L	6088909	6088978	6088909..6088978	CG10733-RD,CG10733-RE,CG10733-RF,	FBgn0061492,	loj,	1	.
CG7704-RA	TCACCACCCTGTTGAGGCACACTAGCACTGTGACCACGATCACCTTTAGTCGCGATGGAACAGTC	65	-	chr2R	6765214	6765279	6765214..6765279	CG7704-RA,	FBgn0010356,	Taf5,	1	.
CG33291-RA	TGCAGATCAACGACATACGCTACCACATCTTCCAGCTTGTGATGCAGTTCCTTTACTGCGGCGGC	65	+	chr3L	21658597	21658662	21658597..21658662	CG33291-RA,	FBgn0053291,	CG33291,	1	.
CG7002-RA	GCCTGCACAAAGTGCGATGATGGACTCCACTTGCCTGACGAGAAATGGAAGAAGGATAAGTGCACCGAA	69	+	chr3L	13851428	13851497	13851428..13851497	CG7002-RA,	FBgn0029167,	Hml,	1	.
CG6521-RA	CCGAGCAACTTTAAGCTTTGTCTTCATTCTGACAAAAGGATGTCATCGAGTATGTTAGTTTTGGCCAAC	69	+	chr2L	10861569	10861638	10861569..10861638	CG6521-RA,	FBgn0027363,	Stam,	1	.
CG7523-RA	GACAAATAAACAAAGCAGCAATAGTTCGAAAACTACGCATTCTAGAGCAGAGCAAATGGAGCAACCAGC	69	-	chr3R	13496505	13496574	13496505..13496574	CG7523-RA,	FBgn0038533,	CG7523,	1	.
CG10280-RA	ACGCAAATCAGGAAAGACAGGCCATTATTCAAGCCGTAAAAACCTTCAACTCCCTAACGTGTGTGCA	67	-	chr3R	1836832	1836899	1836832..1836899	CG10280-RA,	FBgn0037395,	CG10280,	1	.
CG1503-RA	CCTTGCGACCCTACATTCGTTTGCTTTACATTTGTTGACGCATAAGAAAATCAGTAAAAAATTCAAATA	69	-	chrX	20975897	20975966	20975897..20975966	CG1503-RA,	FBgn0031157,	CG1503,	1	.
CG17786-RA	TGCACAAATAACAATCCCATAGTTAACCCGACCCATCATCAATACACCGCATTTGTAACCCACACACAA	69	-	chr3R	20040434	20040503	20040434..20040503	CG17786-RA,	FBgn0039167,	CG17786,	1	.
CG31251-RA	AGCGACTACAAAAACGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAAGGATGTGGAGGT	68	-	chr3R	13510064	13510132	13510064..13510132	CG31251-RA,	FBgn0051251,	CG31251,	1	.
CG18031-RA	CGCAGGACATTGGCATCAAGAGCATGCTGTGTTACACCAAAATGGGCTACGATATTTACAGGCAGGGC	68	-	chrX	2096673	2096741	2096673..2096741	CG18031-RA,	FBgn0023550,	CG18031,	1	.
CG10594-RA	TAGCATCGGGAAGCGGACTTGCATCGGCCAGAATTTGGTGAGAGGATTTGGTTTTCTGGTCGTGG	65	-	chr3L	5583820	5583885	5583820..5583885	CG10594-RA,	FBgn0003486,	spo,	1	.
CG14808-RA	CACGTGATCCGAATGGCATGATTGAGAATCATTTATTCCTGGGACACGATAAGTTCGAGTGCCTGTCGG	69	-	chrX	1642230	1642299	1642230..1642299	CG14808-RA,CG14808-RB,CG14808-RC,CG14808-RD,	FBgn0025391,	Scgdelta,	1	.
CG14523-RA	CCAAGTGACGCGGACTACGTTGATGTCTCAAAACTCACCCAGTTCGTGGAAACTGTCCTTGACCGGGAG	69	-	chr3R	24704918	24704987	24704918..24704987	CG14523-RA,	FBgn0039612,	CG14523,	1	.
CG5645-RA	TGTCGATGAAGGCGAGGAGAAACCAGAATGTCCCTCGGATATCGATGAATTGGTGCTGGAAGATTGGGA	69	-	chr3L	12128403	12128472	12128403..12128472	CG5645-RA,	FBgn0036254,	CG5645,	1	.
CG31322-RA	CGCAGCAAGTGATAGGGAAGGACATCCTCAAGTTCCATGGCATTTACTGGACAGCTTTCCTCCTGGCT	68	-	chr3R	10084527	10084595	10084527..10084595	CG31322-RA,	FBgn0027083,	Aats-met,	1	.
CG33235-RA	AGAAAACCAAAGCAGAGGTGGCTAACCCTACCCTAGCCGAAGTGTCGCCACAGGAAGATGAGAGC	65	-	chrX	11381248	11381313	11381248..11381313	CG33235-RA,	FBgn0030307,	CG33235,	1	.
CG5895-RA	GTAGTTTTCCCATCGGCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGCCAG	68	+	chr3L	16029594	16029662	16029594..16029662	CG5895-RA,CG5895-RB,	FBgn0036560,	CG5895,	1	.
CG3172-RA	TTCACACTGAGATCAATACGAATACGCGGCACCAAACTCTGGGTGGGATCAATTGCCCGCTGAGC	65	+	chr3R	9949077	9949142	9949077..9949142	CG3172-RA,	FBgn0038206,	twf,	1	.
CG14228-RA	TCGAGCCCAAGGAGTTCATACTCACCGACAACGAGATGGAGCAGATCACCAATGAGATGGAGCGCAAC	68	-	chrX	19585077	19585145	19585077..19585145	CG14228-RA,	FBgn0086384,	Mer,	1	.
CG32068-RA	AACTCGTCGCTATTTTGTGGGCGAACCTGTCTGGGCTCCACACAATCGTCCTGCTGATGAAATGGAC	67	+	chr3L	10657338	10657405	10657338..10657405	CG32068-RB,	FBgn0052068,	CG32068,	1	.
CG31933-RA	ACTGCAACACTTCCCACATCCCGAGTAAGTTCTGTCTGTGCCACAAGCAGATTCCCATTCCCGAGAG	67	-	chr2L	1821666	1821733	1821666..1821733	CG31933-RA,	FBgn0051933,	CG31933,	1	.
CG15009-RB	AGCCGACCTGCTTCTGCTTTACCTGATCTATCATCGTCCAACGTTGGGGAGAAATTTGCAAACATTTTT	69	-	chr3L	4226606	4226675	4226606..4226675	CG15009-RB,	FBgn0001257,	ImpL2,	1	.
CG5659-RC	AGATGTTGTCGGAGTATTTGGAACGTGATATTACATCCGAGAATTTGGCTGATATTAAGCAGAAAGTGC	69	-	chrX	18027005	18027074	18027005..18027074	CG5659-RA,CG5659-RB,CG5659-RC,CG5659-RD,	FBgn0017418,	ari-1,	1	.
CG6434-RA	GATGGCGACTTGAACATCGTGGCTTCTTTCGATCGCAGAGGCAAACACATCTACACAGGCAACGCCAAG	69	.	.	.	.	.	CG5585-RA,CG6434-RA,	FBgn0036973,FBgn0036972,	CG5585,CG6434,	2	.
CG31496-RA	CCACAGGTTATCCTACTCTCAAAGAAAACCGTTTATTATCCCAAAAAGCGATCATCTGCACCCAC	65	+	chr3R	3171865	3171930	3171865..3171930	CG31496-RA,	FBgn0051496,	CG31496,	1	.
CG14353-RA	GCGGTCTCCTTGTCTTCGATATGAGAACCCAACATCCGACCAAGGGATTTAGTTACGTGGAGGAACGCA	69	+	chr3L	17902124	17902193	17902124..17902193	CG14353-RA,	FBgn0036771,	CG14353,	1	.
CG9896-RA	TCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTGCCTTCCAGGACGAGTAC	65	-	chr2R	18882998	18883063	18882998..18883063	CG9896-RA,	FBgn0034808,	CG9896,	1	.
CG9779-RA	GAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGCGACATGTCAAAGGAAATGATGAAGG	65	-	chr3R	135957	136022	135957..136022	CG9779-RA,	FBgn0037231,	vps24,	1	.
CG4827-RA	GTGCAACCTTGGCAACTTGGTGACAGATGCCATGATCTATAGTCGCGTGTTGGAAAACAAGGGCGGC	67	+	chr2R	13368708	13368775	13368708..13368775	CG4827-RA,	FBgn0034225,	veil,	1	.
CG31900-RA	CTGACGCCCGAATCCCAGAATTGTGGTGAACGTTTTTGGACTGTGGATGTGACCGCTCAGGACTG	65	+	chr2L	8158294	8158359	8158294..8158359	CG31900-RA,	FBgn0263256,	CG43394,	1	.
CG4785-RA	ACGGAGCCCTCAAAATGGAGAACATGGCAGCTCTGGTTCGAGTGGGTGACAAGTGGTACGGATTCATAT	69	+	chr2L	1165747	1165816	1165747..1165816	CG4785-RA,	FBgn0031314,	CG4785,	1	.
CG18408-RA	AATTTAAATGACTAAAACGATATAAAATGTTTCAAAGTGCTAAGATTCAAGTGCCCTTGTTGAGTCGGC	69	+	chr2R	6194305	6194374	6194305..6194374	CG18408-RA,CG18408-RF,CG18408-RC,CG18408-RB,CG18408-RD,CG18408-RE,CG18408-RJ,CG18408-RI,CG18408-RH,CG18408-RG,CG18408-RQ,CG18408-RK,CG18408-RL,CG18408-RN,CG18408-RO,CG18408-RS,CG18408-RT,CG18408-RU,CG18408-RV,	FBgn0033504,	CAP,	1	.
CG10763-RA	CCTAAGCCATGTGGCACCTTATTGTTGGGGGATGCATTTGTCCAGGACAGATGCCGTCTCGCTTTG	66	-	chrX	8045038	8045104	8045038..8045104	CG10763-RA,	FBgn0030011,	Gbeta5,	1	.
CG33261-RF	AGCGAAGGACAAAAGGTAGAGACTATTGTGACCATGGACCCCAACAACATGATACCGGTAACGTCG	66	-	chr3L	14746854	14746920	14746854..14746920	CG33261-RA,CG33261-RD,CG33261-RC,CG33261-RB,CG33261-RE,CG33261-RF,CG33261-RG,CG33261-RH,CG33261-RI,CG42507-RA,CG42507-RB,	FBgn0013263,FBgn0260233,	Trl,CG42507,	2	.
CG32808-RA	GTGTCGGCCTACGTGGACTGGATTGTAGAGACGGTAAATAGCTATTCGCCCCCGTCGTCGCTTTG	65	-	chrX	1362811	1362876	1362811..1362876	CG32808-RA,	FBgn0052808,	CG32808,	1	.
CG14840-RA	CCGAATTCGGGGATCAACTGATCTTTTCTATATTTTGTTACGTTTCGATTTCGGTTTAATAAGTTTCCT	69	-	chr3R	10085954	10086023	10085954..10086023	CG14840-RA,	FBgn0038217,	CG14840,	1	.
CG8008-RA	ATCCCTGACCACCTATCCCGGTCTGTTCAACTTCGTCAGCTCGTTCCTGTACCTGCTTTCGTTCG	65	-	chr2R	5046288	5046353	5046288..5046353	CG8008-RA,CG8008-RB,	FBgn0033387,	CG8008,	1	.
CG15757-RA	TGTCCACATTTTTGTTGTGTTCAATGAAATGGGATTAAAAAATAATAAAAATTTATTAAGGCAAAGCA	68	+	chrX	13438869	13438937	13438869..13438937	CG15757-RA,	FBgn0030494,	Cpr12A,	1	.
CR32900-RA	GATGACAAACCAATAGACAAGCATATACCTGAATTCACGTGTGTTGCTAACATTTTTGACTGAAC	65	+	chr2R	13590148	13590213	13590148..13590213	CR32900-RA,	FBgn0063387,	snoRNA:U27:54Eb,	1	.
CG2921-RA	GGCGCTAACGGATAGCATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACAGCGT	69	-	chr2R	17961960	17962029	17961960..17962029	CG2921-RA,	FBgn0034689,	CG2921,	1	.
CG7564-RA	AAAACAACAGGAACCGAATATTCTTAGCGTAACCAATAAAGCAACCTAGAGCCACACTTTCGACG	65	+	chr3L	17508904	17508969	17508904..17508969	CG7564-RA,	FBgn0036734,	CG7564,	1	.
CG31075-RA	GTCCCCAGATCGACGATGACATGCTGACCAAGGTGTTGGGCTACATCGAGAGTGGCAAGAAGGAG	65	-	chr3R	22811849	22811914	22811849..22811914	CG31075-RA,CG31075-RB,	FBgn0051075,	CG31075,	1	.
CG3629-RB	AACAGCGGCTCACCCTCACATTATCTACCTCCCGGACACAGTCCAACGCCATCGAGTACACCCGTGTCC	69	+	chr2R	20721171	20721240	20721171..20721240	CG3629-RB,CG3629-RA,CG3629-RC,	FBgn0000157,	Dll,	1	.
CG5385-RA	CCTGCGCCCCAAAGAACCACGTCACGAAATGCATTTCTTAAGAGCAGAGTTCACATTATTTTGGCGGCT	69	-	chr2L	10311632	10311701	10311632..10311701	CG5385-RA,	FBgn0032215,	CG5385,	1	.
CG8948-RC	GCTGTGCCGGTTAGTAGCACGAGTAACTTTCGACATCCCGAGTACCTAATGACCACGGCCAATCCAGTT	69	-	chrX	15647127	15647196	15647127..15647196	CG8948-RD,CG8948-RE,CG8948-RF,CG8948-RA,CG8948-RB,CG8948-RC,	FBgn0030685,	Graf,	1	.
CG8805-RA	CGCTTTAAGATGTCTTATCTGGCGCAATTTCAGTTTTATCATTGTTTTAATTTGACCATGTCTGCATAG	69	+	chr2R	5305216	5305285	5305216..5305285	CG8805-RA,	FBgn0041087,	wun2,	1	.
CG4385-RB	CGAAATTGTTTTTTGTGCGCGTGTACGAGCCGAGTACACAGAACAATTGTGTTGAACGAGAACACAGCA	69	-	chr2L	1051613	1051682	1051613..1051682	CG4385-RB,CG4385-RA,	FBgn0003310,	S,	1	.
CG9381-RA	TTTGTGTGTCTGGAGAATGATAATGGCGTAAAGCAAGTGTCTGTATATAAGCCAAGATTTGCACAAAAA	69	-	chr3R	5364349	5364418	5364349..5364418	CG9381-RA,CG9381-RB,CG9381-RC,	FBgn0037705,	mura,	1	.
CG32666-RB	TTCGCCTAGGGGGAATCAGAATTTAGAGAATGTTACCAGCCAAGCAAAATTGTTAATCGTGTGTCTCGG	69	+	chrX	11448189	11448258	11448189..11448258	CG32666-RB,CG32666-RA,CG32666-RC,CG32666-RD,	FBgn0052666,	Drak,	1	.
CG8914-RA	TGGATGGAGCCTTCTTTGGCACTGGATTCCCTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCA	69	+	chr2R	16177637	16177706	16177637..16177706	CG8914-RA,	FBgn0026136,	CkIIbeta2,	1	.
CG5431-RA	AGGCCAATGTCCGGATACAAGAGGTTCTTGCGAAGAACGGTGTGACTTTGGACGAACTACTGCTCCTGA	69	+	chr2R	19571958	19572027	19571958..19572027	CG5431-RA,CG5431-RB,	FBgn0034888,	CG5431,	1	.
CG6904-RB	CCGGAGTTCCTCACATCCACAAATCCTCTGTTTGGAATCGACTACGAAGAATTTGTCCGTGGCTG	65	-	chr3R	10968990	10969055	10968990..10969055	CG6904-RC,CG6904-RB,CG6904-RA,	FBgn0038293,	CG6904,	1	.
CG4353-RC	CGGGGCAGAGTCCCACAAATCCGCAGAAGACAATAAAACCCACTCAGATACCGAGTTACCAGCAGCAAC	69	-	chrX	12976955	12977024	12976955..12977024	CG4353-RA,CG4353-RC,	FBgn0010303,	hep,	1	.
CG30278-RA	CGTTTCCCGGCTAAAAAATTGTACGGCCTTCAAAATGTCCGCTCCGGAGAACAGTTGTAGGCGGTGGAT	69	-	chr2R	18105867	18105936	18105867..18105936	CG30278-RA,	FBgn0050278,	CG30278,	1	.
CG9518-RA	AGGCGGAGTTTCGTAACCTCGTACTTCCCATTGAATCTCATCGCATGACGTCCTCAAAAACTGTACACA	69	-	chrX	14757232	14757301	14757232..14757301	CG9518-RA,	FBgn0030590,	CG9518,	1	.
CG30353-RA	TGCTTTGCGGAAGTGCCTGTTGCATATCTATAGCAAACTGGGTTGCATAAACAAGCAGCAGGAAGTGCA	69	+	chr2R	4546149	4546218	4546149..4546218				0	no match
CG12419-RA	GCTGCAGAACCACCATCATGCACACTATGGCAATGAATTACTACGTGGAGCGCAGTGACTACGAGGGCT	69	+	chr3R	5807731	5807800	5807731..5807800	CG12419-RA,	FBgn0037769,	CG12419,	1	.
CG18064-RA	ACACTTGCCTGCCATTCTAGGAACCTTTCCAAAGTGTCCTATGCCTAAAGAAATAAAACGTTAAGGTAC	69	.	.	.	.	.	CG32197-RA,CG18064-RA,	FBgn0028416,FBgn0028415,	Met75Ca,Met75Cb,	2	.
CG12324-RA	TTTTGAACTACATCTAAGAGAAGTACTTACGGAAGTTTTCAAGTAAAGGTTTTTTCCCTTTTTCA	65	+	chr2R	6709204	6709269	6709204..6709269	CG12324-RA,	FBgn0033555,	RpS15Ab,	1	.
CG32603-RA	GCAGATTGGCTGTGAAGAAGGTACTAGTGTTCTCACAACTTCGGTCCCAGCAACATGAAATTCTTCGCT	69	+	chrX	14078574	14078746	14078574..14078631,14078734..14078746	CG32603-RA,	FBgn0052603,	CG32603,	1	.
CG12276-RA	GCCACACCGTAATCTGTTCGTTTTTGACCCAGAGACTTGTGCCGGATACGTTGAGGCCATCGGAG	65	-	chr3R	8258324	8258389	8258324..8258389	CG12276-RA,	FBgn0029512,	Aos1,	1	.
CG8026-RB	TAACCGCATTGTGTTTGGTTCTCTTTGCAGGTTTGAGGGCTACAGAGGCTTCTACAAGGGGCTGAAGGC	69	-	chr2R	5074600	5074669	5074600..5074669	CG8026-RB,	FBgn0033391,	CG8026,	1	.
CG10621-RA	TGGTGCCGATATCATTTTGACCAACACCTACCAGTCCAGTGTCGATGGTTACATGGAGTACCTGGAGCT	69	-	chr2L	18953267	18953336	18953267..18953336	CG10621-RA,	FBgn0032726,	CG10621,	1	.
CG13023-RA	ATGAAGCGTGTACAAAAAACTTTGGAGATTGAAGAGGAGATATTGAAGCAACAATCCGCCAGGAT	65	-	chr3L	16917952	16918073	16917952..16917962,16918018..16918073	CG13023-RA,	FBgn0036677,	CG13023,	1	.
CG12404-RA	CTGCGCGTTTACTCAATACTTTTGTTGTCAGCCAATGTAATAAATTTGATTGCGAATAAAAAAATGGTT	69	-	chr2L	12993759	12993828	12993759..12993828	CG12404-RA,	FBgn0032465,	CG12404,	1	.
CG4438-RA	TCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGTTCTTCCGAGGATTGCGAAACGGAATCTCGTGT	69	-	chr2L	9397480	9397549	9397480..9397549	CG4438-RA,CG4438-RB,	FBgn0032115,	CG4438,	1	.
CG8896-RA	GCCAAGCTTTCCTGGTCTAAAAACTCCCCCTATGGCCATATCCATCTCACTCAGCCTCGCAGGGTTCTT	69	+	chr2R	16003527	16003596	16003527..16003596	CG8896-RA,	FBgn0004364,	18w,	1	.
CG7960-RA	TGCTATATATTACCCTCATAGCTTTAAGTAACATCTAAGTAAATCAACAATAAATATCTGAAACCCA	67	+	chr3L	1648546	1648613	1648546..1648613	CG7960-RA,	FBgn0013755,	Bro,	1	.
CG13848-RA	CCAAGATAAGATCGCGACTTTTCGTGCGTCGTGAAGGAACATCCGTGAGCTGCGATCAGTTGCCAAAGG	69	-	chr3R	18249433	18249502	18249433..18249502	CG13848-RA,	FBgn0038966,	pinta,	1	.
CG1882-RA	GCCTGTATCTATTAGCTTAGTGTCTTTGCCTAGTATTAAATGGTCATCTTATCCAATTAGCCGCTATTT	69	+	chr2R	3702069	3702138	3702069..3702138	CG1882-RA,CG1882-RC,CG1882-RD,CG1882-RB,	FBgn0033226,	CG1882,	1	.
CG10645-RB	GCATCAGCGATTTCCATGCCTTTGCGGGTCCAGTCTTTCTGAGATTCCAACATACTCAGCCCAGGACTC	69	-	chr3L	5337373	5337442	5337373..5337442	CG10645-RC,CG10645-RB,CG10645-RA,	FBgn0016031,	lama,	1	.
CG1826-RA	TTGTACTTGAAATACTCCTGTGGTCTGTTAGCTGTTAGTCTCCGCGCTTAGTTATATTTTGCAGACCGT	69	+	chrX	10665133	10665202	10665133..10665202	CG1826-RA,	FBgn0030228,	CG1826,	1	.
CG5039-RA	TCTTTGTACATCCCCTGAAAACGATGAAGTTACTTGAGCCTCAGACGACCATTAGTCCTGAACCGGACA	69	+	chr3R	21504475	21504544	21504475..21504544	CG5039-RA,	FBgn0039356,	CG5039,	1	.
CG6689-RA	TGCAGGTGGAGATCATGTTGAAGATGAAGCGACATCAGATGACCAAACAAGTCAAGAGGCAGTCGACGA	69	-	chr3R	7044717	7044786	7044717..7044786	CG6689-RA,	FBgn0037877,	CG6689,	1	.
CG1863-RA	TGGCTAAGAGGGCAACTGAACAACCACACCTTGCAAGATCTGGAGAACCGTAGCTACAGGCTCAACTCA	69	-	chr2R	5482600	5482669	5482600..5482669	CG42600-RD,	FBgn0261016,	clos,	1	.
CG1385-RA	GAAGCGAGCCACATGCGACCTACTCTCCAAGTGGAACTGGAACCACACCGCCTGCGCCGGCCACT	65	-	chr2R	5941858	5941923	5941858..5941923	CG1385-RA,	FBgn0010385,	Def,	1	.
CG32652-RA	TTGCGCTTACAATCAATGCAAGCCATAGAAGCCTACTCTTCATACACTATGTTAATAAGCCATCTTATG	69	-	chrX	12305482	12305551	12305482..12305551	CG32652-RA,	FBgn0052652,	CG32652,	1	.
CG3018-RB	CGGAAAGGATTTCCCAGCAAATGTGCAGTCGAGCACTTGTTGGTCGTCAGTAGCCGTACAGCTGGATTT	69	-	chr2L	541302	541371	541302..541371	CG3018-RA,CG3018-RB,	FBgn0010602,	lwr,	1	.
CG31867-RA	GGGCCTAAGCCTATTCCCTTGCCATTTGTGGGAGTTTCTTGCGAATGAGGTGTGCTTAGAGACCGACAA	69	-	chr2L	11144930	11144999	11144930..11144999	CG31867-RA,	FBgn0051867,	CG31867,	1	.
CG30447-RA	AGCGACGCCACTAGTAGCGACTTACGTAACGAGTCAGCACATCCAACATTCTCTGGGACTAAGCAACTT	69	+	chr2R	15834876	15834945	15834876..15834945	CG30447-RA,CG30447-RB,CG30447-RC,	FBgn0050447,	CG30447,	1	.
CG6938-RA	AAATGGCCCCAAGGATTACGAACCCTATGGACTGAGTCCCCATTACTGGCATGTCTTTGCTGCCC	65	+	chr3L	11982965	11983030	11982965..11983030	CG6938-RB,	FBgn0036235,	CG6938,	1	.
CG11196-RA	GCCCATTGGCCTTCTACAAGGGATTCATTCCGGCCCTGATACGAGTGTCACCCAATACGATTATCACCT	69	-	chr2R	3881454	3881523	3881454..3881523	CG11196-RA,	FBgn0033248,	Dic3,	1	.
CG32845-RA	CGCCTCCTATGGTGATGGGGACAGTGGGCTATCGAACCTAACTGAAGAACGTACTTCCGAAAGGCCAAA	69	-	chr3L	273158	273227	273158..273227	CG32845-RA,	FBgn0052845,	CG32845,	1	.
X06779.1_O2	TACATATTAACAAGCCGTCTCAACCAAGACATTGTGGAGCATTTTTTTGGCAGCATGCGATCGAGAGGT	69	.	.	.	.	.				0	no match
CG40041-RB	GGATGCCATCGTCGTGTATACACGTATAAAGTGACACAGTCCGATCTTCAAGGACACGAGTGTTGGGAC	69	+	chr2LHet	167481	167550	167481..167550	CG40041-RC,CG40041-RA,	FBgn0063368,	Gpb5,	1	.
CG12480-RA	GCGGCTATATTTACTAAGACAAATAACTGAGAGCCACAGAGTCTAATATAATCTTAAATTTATAACTTT	69	+	chrX	14065464	14065533	14065464..14065533	CG12480-RA,CG12480-RB,	FBgn0030537,	CG12480,	1	.
CG10686-RA	GCCTGAGGAGGATGATGTTGCTGTGTGCTACGACAAGACCAAATCGTTCTTCGACAACATCTCGTGCGA	69	+	chr3L	12511599	12511668	12511599..12511668	CG10686-RA,	FBgn0041775,	tral,	1	.
CG7322-RA	CCCCGCTTGAAAGACGGAGCCTCAATTGTCAACGTGTCCTCGATAGCGTCATCCCGATCCTTTGG	65	-	chrX	18750349	18750414	18750349..18750414	CG7322-RA,	FBgn0030968,	CG7322,	1	.
CG13559-RA	GATCACACAGCACCACGTGGCTGCTCGCGGAGAATACCTCATCACTCATGATCTGTCCAATGTGC	65	+	chr2R	19390925	19390990	19390925..19390990	CG13559-RA,	FBgn0034870,	CG13559,	1	.
CG13538-RA	TCGCCAATAGCTACCGCAAGTGCTACAACTTTGCCATGGACCTAACCTCGGAGCTAAAGGCGCAC	65	+	chr2R	18975071	18975136	18975071..18975136	CG13538-RA,	FBgn0034820,	CG13538,	1	.
CG7458-RA	ATCTTTCCCACAAACGTGCGAAACACCCTGTTGTCGCTCTGTTCCATGGTGGGACGGATAGGATC	65	.	.	.	.	.	CR34262-RA,CG7458-RA,	FBgn0085291,FBgn0037144,	CR34262,CG7458,	2	.
CG9368-RB	AGACTCTTAGTTGTTTACACAGGTTTCCTCGAACATCCTCATCAAATTCATCAACTAATCCGCACACAC	69	+	chr3L	19596819	19596888	19596819..19596888	CG9368-RB,CG9368-RC,CG9368-RA,	FBgn0036890,	CG9368,	1	.
CG11993-RA	AGAAGTCGCAAATCCAATCTCCATTGCAATTTTGAACACCATTCCTTTGCATAACTATTGCCCACGCAA	69	+	chr3R	4876585	4876654	4876585..4876654	CG11993-RA,	FBgn0028708,	Mst85C,	1	.
CG14310-RA	CTACTACCCACCCCTCTGCTGCTTCCACGTCCACATCCTCATCCAAATCCAAAGTCACCCTCCTC	65	+	chr3R	14198877	14198942	14198877..14198942				0	no match
CR33319-RA	CCCCGCGTCCTAGCAGTTCCTTGAATCCGAGCCAACATGCGTTGAGCCAACAACTAACATTTTGGTCTT	69	+	chr2L	20929267	20929336	20929267..20929336	CR33319-RA,	FBgn0053319,	CR33319,	1	.
CG13408-RA	GTGTGAGAAGCTCACTGGGCAGTGTGATTTTAATTTACTTTGTCATCTTGCTTCGTTTGGTCAAC	65	+	chr3R	17906187	17906252	17906187..17906252	CG13408-RA,	FBgn0038929,	CG13408,	1	.
CG4692-RA	AGTAGCAGGCGTAATTTTATGTTTCATAAGAATCCGATTTAAGAATATATCTCAACCAAACCAGC	65	-	chr2R	20487221	20487286	20487221..20487286	CG4692-RA,	FBgn0035032,	CG4692,	1	.
CG10137-RA	AGCGTACACTTAATCGATCTATTGGCCTAGCGAATTAGCGAATTTATTAGAGCAACTATTCTAGTCAGG	69	.	.	.	.	.	CG10137-RA,	FBgn0032800,	CG10137,	1	.
CG14455-RA	AAGACGCACCAGGACATAGAGGACGTTCAGCTGGTGGTAGACTTTGGTTTGGAGACGGACAAGGG	65	-	chr3L	22679861	22679926	22679861..22679926	CG14455-RA,	FBgn0037175,	CG14455,	1	.
CG4485-RA	GCGTCACCGAGAACCACCAGGGATATGTGGGAATCAGCACGAGGGTTCAATATAATTCCTACGACCGGA	69	-	chr2R	3015575	3015644	3015575..3015644	CG4485-RA,	FBgn0015038,	Cyp9b1,	1	.
CG3808-RA	GGAGGGAGCTGCACAGTCAAAGTCTGAGGCAACCGAAGAAGCTGTTAGCGAGGAGAACACCACATC	66	-	chr3L	18991632	18991698	18991632..18991698	CG3808-RA,	FBgn0036838,	CG3808,	1	.
CG5498-RB	CGTTGTGGAGAACGCGAGCCAGGAAGATGATCAACTTGAGCAGGAATTGCGTGAACTGGCTGGAGAATC	69	-	chr3L	20375748	20375817	20375748..20375817	CG5498-RB,	FBgn0027565,	CG5498,	1	.
CG10579-RB	TCCTCTCTGTGGATGGCGTACGTTTCTACTGTTAGGATCCAAATCACCCAATCAACATCCTCCTGGACT	69	+	chr3L	3607579	3607648	3607579..3607648	CG10579-RF,CG10579-RG,CG10579-RH,CG10579-RI,CG10579-RJ,CG10579-RK,CG10579-RD,CG10579-RE,CG10579-RA,CG10579-RB,CG10579-RC,CG10579-RM,CG10579-RL,	FBgn0005640,	Eip63E,	1	.
CG5412-RA	CACGTTGCACATCTACGGACAGACGGATGAGATCATTCCCAAGGAGATGAGCGAGTCCCTGGCTG	65	+	chr3R	16403464	16403529	16403464..16403529	CG5412-RA,	FBgn0038806,	CG5412,	1	.
CG13436-RA	AGGCGGCACTGGATGACCTCATAAACATAGATCATAAGGACGAGACCTTGACCTACCGCGTGCCC	65	+	chr2R	16524759	16524824	16524759..16524824	CG13436-RA,	FBgn0034532,	CG13436,	1	.
CG31934-RA	TGCTGCTTGAAGAACTTTTGCCAGGCAAAAAACTTTCAGGTGTGAGCTTTGGATACTTCAGCAGAGTGA	69	-	chr2L	1671104	1671173	1671104..1671173				0	no match
CG9198-RA	GGTGATGCTGCTATTCTACAATGCCGTGGTCAAGGATCGCATGCATTTCCTGCCGGTTTACCTAACCCT	69	-	chrX	15350401	15350470	15350401..15350470	CG9198-RA,CG9198-RB,	FBgn0004391,	shtd,	1	.
CG8426-RA	ACAACGGAACTTCAACTGGTAGTGGTCTCATGAATGTAGCAAACGCTACTGGTCAGCCTATCAGCGGCA	69	-	chr2R	1545377	1545446	1545377..1545446	CG8426-RA,	FBgn0033029,	l(2)NC136,	1	.
CG5137-RA	TCCTGGAGGCGTGTATAAAGGAAACTCTGCGGATGTATCCTTCAGGTCCACTCACTGCCAGAAAAGCCA	69	-	chr3L	18123688	18123757	18123688..18123757	CG5137-RA,	FBgn0036778,	Cyp312a1,	1	.
CG6646-RA	CGTGCCGGATACTTCACTGGAAGAGGCCGTGACCAGAGGTGACTACGATGTGGTTGTTCTTCCTG	65	-	chr2R	9830504	9830569	9830504..9830569	CG6646-RA,	FBgn0033885,	DJ-1alpha,	1	.
CG4793-RB	GGCCACGTGAACCGTATAGGAGTGGGCTTCACCATAACTAACGCGAGAGACATCGCACAGAAAGGC	66	+	chr2L	15923728	15923794	15923728..15923794	CG4793-RD,	FBgn0028514,	CG4793,	1	.
CG14024-RA	CAACGTTGGACCAATTGCTCAAGATATATCGCATCGATTTCGAGCTCTTTGACTACGACTATCGC	65	-	chr2L	5312450	5312515	5312450..5312515	CG14024-RA,	FBgn0031697,	CG14024,	1	.
CG10695-RA	GCCTGCGTCTGTTTGGGAACTCATACTCTGGCCTGGAGTACGATTATTTGGGTCTGTGCCACGTCTACG	69	+	chrX	6489346	6489415	6489346..6489415	CG10695-RA,	FBgn0029878,	Pat1,	1	.
CG5111-RA	AACTGCCAGATGCACAGCGACGTTTGGATATTTGCGAGAGGGGCTTTGTCAAGAGCTATGGCGAG	65	+	chr3R	21332911	21332976	21332911..21332976	CG5111-RA,	FBgn0039343,	CG5111,	1	.
CG30383-RA	TGCCAATATCGGCCGTATTGCTCGATCTACGCTTTTGCACGATGCTGAACAATCGATCCACAGGGAGTT	69	-	chr2R	3712521	3712590	3712521..3712590	CG30383-RA,	FBgn0050383,	CG30383,	1	.
CG1913-RA	TAACCGTCGAAATCAGTGTTTACGCTTCCAATCGCAACAAAAAATTCACTGCAACACTGAAAAGCATAC	69	+	chr3R	2914353	2914422	2914353..2914422	CG1913-RA,	FBgn0003884,	alphaTub84B,	1	.
CG9184-RA	GCGTGATGCATTGTAGTTCTTACTTATCATCGCATGCGTTCTAGTTTATAGCCCTATTCAATATCTAAT	69	-	chr3L	1321870	1321939	1321870..1321939	CG9184-RA,CG9184-RB,	FBgn0035208,	CG9184,	1	.
CG1276-RA	GGACAGCTGAGCAGGCATTGTTTAGATTTTGTAAATTGTTGATTTCTCGCAGCAGAAAGTTTTTTTTCG	69	+	chr3L	4287049	4287118	4287049..4287118	CG1276-RA,CG1276-RB,	FBgn0015829,	TfIIEbeta,	1	.
CG5474-RA	CAAATTGATTCCATGCGTTGTTCATCTATTCAACCCACACATCTAATTTACTCCAGTCTGGGACTGTCG	69	+	chr3L	16123892	16123961	16123892..16123961	CG5474-RA,	FBgn0011016,	SsRbeta,	1	.
CG12659-RB	TCTGGCCATCTCAATTGCAAGCTTGAAACGTGTGAAATATGGAACAAAATGCGAAGCCTAAACGCTCCT	69	-	chrX	8485696	8485765	8485696..8485765	CG12659-RB,	FBgn0040929,	CG12659,	1	.
CG8709-RA	TCGCTAGAAGTCGACGAATACTTTCCCCTGCTAACCAACCAAGATGAATTCGATTACCGGACGGACAT	68	-	chr2R	4026013	4026081	4026013..4026081	CG8709-RA,CG8709-RD,CG8709-RE,CG8709-RG,CG8709-RH,CG8709-RM,	FBgn0033269,	Lpin,	1	.
CG11145-RA	CGGGGGAGTTGGCTTAGTAACTGCCTTTGGAGTGGATAATTTTAGGTCTTTGGGTGGAAGTGTTTCGTA	69	-	chr2R	3315441	3315510	3315441..3315510	CG11145-RA,	FBgn0033168,	CG11145,	1	.
CG5897-RA	ATGAGCTATTGCGACAGTGCACCGATGAATATCCCAATCATAGGGTGTGCTACATGGATGGATAA	65	-	chr3L	11880984	11881049	11880984..11881049	CG5897-RA,CG5897-RB,	FBgn0036220,	CG5897,	1	.
CG8813-RA	CAGGCTGGAGACCAACCGTATGAACACCACCTATCAGATCGATTACTGTAACATGAACGAGTACCCGGA	69	+	chr2L	2870131	2870200	2870131..2870200	CG8813-RA,	FBgn0031476,	CG8813,	1	.
CG8581-RA	AGAAATTAGGCGAACAGTAGCGTCTATTGTGCAGGATCGGTTCTGTCTCTAAACTGTCACACGACATTT	69	+	chr2R	8450966	8451035	8450966..8451035	CG8581-RB,CG8581-RA,	FBgn0011592,	fra,	1	.
CG32920-RA	GCCCGAAAACACTAGAAACTCATACATGCTAATGCTAGGCCGCAATGATATCAATTACGTCTTCAAAAG	69	-	chr3R	13991204	13991273	13991204..13991273	CG7215-RA,CG7217-RA,CG7217-RB,	FBgn0038571,FBgn0038570,	CG7215,Prx5,	2	.
CG12520-RA	GCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTATGCCTGCATACAGAAGAATTTGAGCCACA	69	-	chr3L	12894965	12895034	12894965..12895034	CG12520-RB,	FBgn0036324,	CG12520,	1	.
CG9246-RA	CCGGAGTGATTCGACTGATACCCACCGCTCAATACTTCCCATTGCGATTCCACTGTCTGCAGACCCTAA	69	+	chr2L	21165106	21165175	21165106..21165175	CG9246-RA,	FBgn0032925,	CG9246,	1	.
CG13720-RA	AGCCAGGCGATAAAAGTGGATAGTGGGAGCAAGGAAGGAGATTCCAGTAGCACTCCAAGTCCTCCTCTT	69	-	chr3L	4500321	4500390	4500321..4500390	CG13720-RA,	FBgn0035555,	CG13720,	1	.
CG18107-RA	CCGTTGTCACCCGATCCAGGAAATGTTATCATCAATGGCGACTGTGTGAATTGCAATGTTCGTGGTGGC	69	+	chr2R	14272268	14272337	14272268..14272337	CG18107-RA,	FBgn0034330,	CG18107,	1	.
CG8042-RA	GCAATAGAATAACGCAATTCCTTTACAGTAATCTGTTTGACGACAGTCTATAGCTATCGAACTATGCAA	69	-	chr3L	7965598	7965667	7965598..7965667	CG8042-RA,CG8042-RB,	FBgn0027554,	CG8042,	1	.
CG5280-RA	ATTATTAGCTTTACAGAATGAGCCGACATCGCTTCAACAACGTGCAGATCAAGGCATTGCCCGGT	65	-	chr3L	8983185	8983250	8983185..8983250	CG5280-RA,	FBgn0035952,	CG5280,	1	.
CG4910-RA	GGAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGAGATGCAGCAATTGG	65	-	chr3R	18526499	18526564	18526499..18526564	CG4910-RA,	FBgn0039007,	Ccap,	1	.
CG7829-RA	CCAGCCGATATCGCCAACATTCCGTACATAGTGTCCATCCAACTGTACGGCATCCACCATTGTGGCG	67	-	chr3R	25643287	25643354	25643287..25643354	CG7829-RA,CG7829-RB,	FBgn0039703,	CG7829,	1	.
CG13681-RA	ATAAATATGCGCCTGGAAGAAGGCTAGCTGCGCGGCAAACTCTTCGATTGGCAATACCGAAGGCG	65	+	chr3L	8064978	8065043	8064978..8065043	CG43119-RI,	FBgn0262579,	Ect4,	1	.
CG9239-RA	TGCGAGGCCTTGCTTAAGATCGGTAAAATGTTTTGAATAGGCTTTTGGAGCAATCAGCCACAAAATCAA	69	-	chr2L	13503920	13503989	13503920..13503989	CG9239-RA,CG9239-RB,	FBgn0023407,	B4,	1	.
CG40092-RA	TGGGCATGATGAGATGAGATAACTAGCGTGACCAAAACGTCCGCATCTTGAACATTCGCCTTGTGGCTT	69	-	chrU	235451	235520	235451..235520				0	no match
CG4406-RA	CCATGTGGATCCATCGATTGGAGTCTACATGATAGACCGGTACACCTACTACGCCTTGGAGTTCCTGGA	69	-	chrX	1902423	1902492	1902423..1902492	CG4406-RA,	FBgn0023545,	CG4406,	1	.
CG7432-RA	TTTCCTCATCCTCCACTGTTTTGACCACTCAGAAACCTCTGAGGCTGACCACTCGTCCCACGACG	65	+	chr3R	15495081	15495146	15495081..15495146	CG7432-RB,	FBgn0038727,	CG7432,	1	.
CG32578-RA	AGCACCGATTGCGACTTTCTGGAGCTCTCTAGACTGAATCAACCAACTGCTGACAACCAAAACAAGGCA	69	+	chrX	16253786	16253855	16253786..16253855	CG32578-RB,	FBgn0086448,	Gpi1,	1	.
CG12592-RA	ACGGTGGTCGATGAGCCGCCCACTAAAGTTCCCATAATCGAGCTGATTAAGACAAGTTCGGGCATGGTT	69	+	chr3R	6166003	6166072	6166003..6166072	CG12592-RA,	FBgn0037811,	CG12592,	1	.
CG4290-RA	GGAGCTCATGCCTTCAGTCAGATGAACCTCAAGACTTCCTACATCAGCCAATCGGACCAGGTGCCT	66	-	chrX	1950296	1950362	1950296..1950362	CG4290-RA,	FBgn0025625,	SIK2,	1	.
CG16736-RA	TGCTGATTAAGACTACGGCCCAACTGTTGTCGCATCCCATGGAGCTAGTTCGTGTGAATATGCAGGCGA	69	-	chr3R	5083312	5083381	5083312..5083381	CG16736-RA,	FBgn0037668,	CG16736,	1	.
CG30287-RA	GGTGGTCAGCTATGGTGCGGTTCACTGCTTTGGCCCTACTGTCTACACAAACGTCATTCACTTTGCGAA	69	-	chr2R	17424515	17424584	17424515..17424584	CG30287-RA,	FBgn0050287,	CG30287,	1	.
CG5913-RA	TTAAGAAGCCCTTGACTGATGCACAATGGCAATTGTTGGAGACCCTGCACCGAGAACTGGAGGCG	65	+	chr3R	21719865	21719930	21719865..21719930	CG5913-RA,	FBgn0039385,	CG5913,	1	.
CG12582-RA	GCATAGCTCTCGACCTCAGCCACTGGTCTCCTCACCTTCAAATGGCAAAGCTAGTGAACCGGACAACTA	69	+	chr3R	27937	28006	27937..28006	CG12582-RA,CG12582-RC,CG12582-RD,CG12582-RE,	FBgn0037215,	CG12582,	1	.
CG1652-RA	GCTATTTGCGCAGGATCAACGGCAAGTGCTACTACTTTTCGGTGAAAAAGATGAACTGGTTTGGCGCCC	69	+	chr2R	5703107	5703228	5703107..5703157,5703209..5703228	CG1652-RA,CG1652-RB,	FBgn0040092,	lectin-46Cb,	1	.
CG18213-RA	AGTCGTTGGTGTGACAGCTAAAAAAGTCCATAAAGGCGAGGAATTAGTGATATGCCCTGATTTTGCTAG	69	-	chr3R	12863309	12863378	12863309..12863378	CG18213-RB,	FBgn0038470,	CG18213,	1	.
CG13778-RA	GGTTCGCGGTGTGGAGAAACATTCGGCCACAATTTCAGCCACCATCACTGCAATCTCTTCCAGTT	65	+	chr2L	7061516	7061581	7061516..7061581	CG13778-RC,CG13778-RA,	FBgn0031885,	Mnn1,	1	.
CG13239-RA	GTGGCCCACAGCAGGCTGCACCATATGTAGCTGCGTCGCAGTACTACCAAGCCTATTTTGGATAG	65	+	chr3L	22854280	22854345	22854280..22854345	CG13239-RA,	FBgn0037197,	CG13239,	1	.
CR32477-RA	AGTAGGCTGGAGGTATCATTTCTTCACTAAGCACCATCGATTTCACACTACTGGCTTGGGATAGCACCT	69	+	chr3L	230040	230109	230040..230109	CR42862-RA,	FBgn0262109,	CR42862,	1	.
CG11262-RA	TGCCTGGCGTTTTATTGGCGGCTGTAGCGGGCTATGCTGTCATGTATGTGACCATGAGGAAATCTTTGT	69	+	chr3L	12989466	12989535	12989466..12989535	CG11262-RA,	FBgn0036329,	CG11262,	1	.
CG1660-RA	TCCGACTTCCTAATGTCCTACAACAAACTGTCCGAGACGTGCTTCACAGATTGCATACGCGACTTTACA	69	+	chrX	13279535	13279604	13279535..13279604	CG1660-RA,	FBgn0030480,	Tim9a,	1	.
CG8177-RG	AAATATCCTTCCCACGGAAAGGAGCGTCACACAATGATTGCATCACACGCAAAAGAAACCAACGAGCGG	69	+	chr3L	9778920	9778989	9778920..9778989	CG8177-RG,CG8177-RA,CG8177-RE,	FBgn0036043,	CG8177,	1	.
CG18731-RA	TGCTGGCGGACATGGAAACGTTCGAGGTCAATCAGCCTACGATAAGCGGATCTACAGACAACTTGGACT	69	+	chr3R	25551037	25551106	25551037..25551106	CG18731-RA,	FBgn0042213,	CG18731,	1	.
CG5509-RA	TGGACGAGGAAGATCAGTCGTCTACGGGTTCAGTGGAATCGGGTAGCATGTCCTTCGAAATGAAACGGA	69	+	chr3R	8278441	8278510	8278441..8278510	CG5509-RA,	FBgn0038054,	CG5509,	1	.
CG12057-RA	TACCGTCGTCGCTAGGTGAACACAAACTTATTTACCTGGATTCTGCAAATAAAAATTATGCATGTTCTA	69	+	chrX	9086362	9086431	9086362..9086431	CG12057-RA,	FBgn0030098,	CG12057,	1	.
CG12119-RA	GGGCACTATATCCACTCTTTGGCGTCGTCAATCACGACTGCATTCCCAACGCCTACTACACCTTCGAGG	69	-	chrX	9103629	9103698	9103629..9103698	CG12119-RA,	FBgn0030102,	CG12119,	1	.
CR31972-RA	TGAGTGTCTCGTTTTATTGTTGCTTCGCGCTCGTTTGATGATGCTCACCGATGTCTAGACAAGCGGCCG	69	+	chr2L	4900234	4900303	4900234..4900303				0	no match
CG9459-RA	GGTGTTGACCATCCTTGGAATCTATCTAGTCTTCATAAAAATAGTGGGTCCTTGGTTTATGCAGAATCA	69	-	chr3R	5643939	5644008	5643939..5644008	CG9459-RA,	FBgn0037764,	CG9459,	1	.
CG3945-RA	GCACGGAGGTTTGCTTTATCAACACAGACGACTCTCAACAACCTAAACCTGCGAAAAGCTCCTCCGACG	69	-	chr3L	18864138	18864207	18864138..18864207	CG3945-RA,CG3945-RB,	FBgn0025807,	Rad9,	1	.
CG13059-RA	GTACATGCCGCTCCTCTGGTCAAGACTGTGATCCCTGCCGCTCCCCTGGTCAAGACTGTGATCCC	65	+	chr3L	16317114	16317179	16317114..16317179	CG13059-RA,	FBgn0036607,	CG13059,	1	.
CG9121-RA	AACCTTCGAAACCACCGGAGAGTTCATATCATCCCAGTGCTGTGTCTCCTGTCGCGAACATGATCCGC	68	-	chr2L	5049810	5049878	5049810..5049878	CG9121-RA,CG9121-RB,	FBgn0031675,	CG9121,	1	.
CG13732-RA	TCAATGTCAAGAATCTACACGAGTTCAAGAACTTCGTAAAAGCAGTTGAATCAGCAGCTGGTCAG	65	+	chr3L	17472753	17472818	17472753..17472818	CG13732-RA,	FBgn0036730,	qjt,	1	.
CG5249-RA	GACCAGACCAGGAAGTGATGTAATCCAAGTGCAATAAAGTTAAATAGAGTTAAGCGACAGACAGG	65	+	chr3L	5641949	5642014	5641949..5642014	CG5249-RA,	FBgn0035625,	Blimp-1,	1	.
CG4865-RA	GAAGCAGTGCCTGGAACATCTGAACACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAAC	65	+	chrX	4008619	4008684	4008619..4008684	CG4865-RA,	FBgn0026085,	dgt4,	1	.
CG7133-RA	GGGCCTTGTACGATTGCTGCTTCCAGTCCATGGACGTTGAAGCCATTATTCCCGCTGAGAACGCTAA	67	-	chr3L	22067185	22067252	22067185..22067252	CG7133-RA,	FBgn0037150,	CG7133,	1	.
CG6492-RA	TTTTTTTATTGCGCTGATAACTACGGGTTTTTTAGTTTTTTATAAAGGATATAAATAGAGCGGCT	65	+	chrX	17739026	17739091	17739026..17739091	CG6492-RA,CG6492-RB,	FBgn0030872,	Ucp4A,	1	.
CG13738-RA	CGATGAAGTACTTTGTGATCTGTGTTTTGGCTGCAATCGTTCTTTTCCAGTCCGCATCGGGATTCAAGC	69	-	chr3L	13966473	13966542	13966473..13966542	CG13738-RA,	FBgn0036390,	CG13738,	1	.
CG30181-RA	GCAGTCACGCTGTGCTACTACGACCACATCGACTCCTTCAAGGCCAATGAGTACATACAGGAGATGTGG	69	-	chr2R	19427885	19427954	19427885..19427954	CG30181-RA,	FBgn0050181,	CG30181,	1	.
CG5554-RA	GCCAAGCATTTTTGTATTTTGTGTTCAACTTGGTTTCCACACAATTCATTTCTCTTAAGCATTTCATTT	69	+	chr2R	19734407	19734476	19734407..19734476	CG5554-RA,	FBgn0034914,	CG5554,	1	.
CG7049-RA	CAAGCTGATGCCAAGGAATGAACATTGGCTGAACATCTGGCAGGGAGACTTTCCCGATGGCAACC	65	-	chr3L	175464	175529	175464..175529	CG7049-RA,	FBgn0035102,	CG7049,	1	.
CG12754-RA	GTGCTCCGGTATGTGTACCTCACCTGGACGCTAATGACGTTCGTGTGGTGTACAACGTACCTGCC	65	-	chr2R	1685835	1685900	1685835..1685900	CG12754-RA,	FBgn0033043,	Or42b,	1	.
CG32000-RG	GGGTTCATCTGCATCAACAGCCCTGGTTTAAAGCTTTCGAGCCTGCGGATGAAGATCATTTAGGTTGCT	69	+	chr4	162828	162897	162828..162897	CG32000-RG,CG32000-RA,CG32000-RB,CG32000-RH,	FBgn0052000,	CG32000,	1	.
CG40113-RA	GGCGTTGGCGTTAAATGACATCATTCGAGGACTGTCGTATGGACTCGGTCCGAAAAGGTTTCGCTCGGA	69	.	.	.	.	.				0	no match
CG32699-RA	TAGCTCTACAGCGAATCCAGTCAGCAAATAGACAGGGAAAGCTTTGTGCGATTGATGAGACACGCTGGC	69	-	chrX	9467293	9467362	9467293..9467362	CG32699-RA,	FBgn0052699,	CG32699,	1	.
CG5383-RA	GCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTCGCGACGACCTCTTCCAGTACTGCGGC	65	-	chr3R	18187507	18187572	18187507..18187572	CG5383-RA,	FBgn0038948,	PSR,	1	.
CG11297-RA	AACCCCAAGCCAAACAAGCTGATAAAGTTAAAAGCAGCCACATGAGTGAGTTTGCTTACACGCGAAACT	69	+	chr2L	895517	895586	895517..895586				0	no match
CG8075-RA	AGAAACAATGCTCAAAAGCCCAGTGTATCATCCTAAACCGACGCGAACATATCACACCCTTTGATAAGC	69	+	chr2R	4993343	4993412	4993343..4993412	CG8075-RA,	FBgn0015838,	Vang,	1	.
CG7360-RA	ACGGACATCCACCTCCAAATTCACGAATGTCAGCCACGAGATCACGAACTTGAAATGGGCGCTGC	65	+	chr3R	15471966	15472031	15471966..15472031	CG7360-RA,	FBgn0038722,	Nup58,	1	.
CG13827-RA	CGAGCACAAGATTGTGGATGTCAAGAATGCGGATAACTGGGACAATGTCAACTCCATATTCTGGGTGCT	69	+	chr3R	19085670	19085739	19085670..19085739	CG13827-RA,CG13827-RB,	FBgn0039068,	CG13827,	1	.
CG32799-RA	CGCGCCCTTAGGATTCTTAGTGTTGTGCGATGCTTCTTTCTGGACGAAGCCAGCCGAAAGTTGCTGTAT	69	-	chrX	2107307	2107376	2107307..2107376	CG33548-RB,	FBgn0053548,	msta,	1	.
CG12620-RA	CGGAGAGTCAACTAAGCGTGGATGATGAACATATCTCCGAGATCGCCGAAGAGGAGTGTCCGCCC	65	+	chr2L	17088082	17088147	17088082..17088147	CG12620-RA,	FBgn0032626,	CG12620,	1	.
CG18619-RD	TTGAGAGTTATAATGGCTGATATGGAGATACAGAGCAACAAAATGTCAATAACGGAGGAAACACAAGTG	69	+	chr2L	10264195	10264264	10264195..10264264	CG18619-RB,CG18619-RD,CG18619-RC,CG18619-RA,	FBgn0032202,	CG18619,	1	.
CG12654-RA	ATCCCTCCGCACTATCGCTGCGATATGATCGAGGATTGTGAGGACAAATCGGATGAGGCGCAGTG	65	-	chrX	9276644	9276709	9276644..9276709	CG42611-RA,	FBgn0261260,	Megalin,	1	.
CG14067-RA	TTGCTTCGGTGAATAGGAAATTTCCCCAGTTCGGAAATTCCATCGATGATGAACGAGAGGCCGAG	65	-	chr2L	10925367	10925432	10925367..10925432	CG33507-RD,CG33507-RE,	FBgn0261871,	dpr2,	1	.
CG13667-RA	ACTACAGAATCTGGGAGCAAATAGCGTGTGTCCAGTGGGTCTGTGTGATGATCAGCATGACTACGGGCA	69	+	chr3L	8398974	8399043	8398974..8399043	CG13667-RA,CG13667-RB,	FBgn0035890,	CG13667,	1	.
CG8485-RB	ACAGATAGCTAATAGCGGAGTGCCAAGCCATTCACGTACAAAGATTGTCGTCTCGGTGGATGCAACGCT	69	-	chr2R	10124749	10124818	10124749..10124818	CG8485-RA,CG8485-RD,CG8485-RB,CG8485-RC,	FBgn0033915,	CG8485,	1	.
CG6779-RA	TCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATTCGGGAGATCCGTGCAACG	65	+	chr3R	19185276	19185341	19185276..19185341	CG6779-RA,	FBgn0002622,	RpS3,	1	.
CG10047-RA	TAGCTCAAACCGAACGCAATAAGCACTACAGGTGTATCTAGCGGCACTACCTTTAAAGGCAACGGATGG	69	+	chr3R	3096036	3096105	3096036..3096105	CG10047-RA,	FBgn0028400,	Syt4,	1	.
CG10094-RA	TGCCGAAAAAGTCCTCACGTCACCCTTCTGCATCAACAGAAGTTCTCAGACAACTAATGCTCTCGCACT	69	-	chr3R	8062239	8062308	8062239..8062308	CG10094-RB,	FBgn0038006,	Cyp313a2,	1	.
CG5325-RA	AGAAGCAGATGGAGCTGTACAAGGTGATTGAGGGGCATTTACAGAGCGAGAAGACCGAGGATTCGG	66	+	chr2L	12094773	12094839	12094773..12094839	CG5325-RA,CG5325-RB,	FBgn0032407,	CG5325,	1	.
CG11134-RA	AAAGTTCGAGAGCTCATAAGGAAGTGAAGCTGATACGAACGCACATTCTACTTGTCGTTTAACCCTATA	69	+	chrX	13633084	13633153	13633084..13633153	CG11134-RA,	FBgn0030518,	CG11134,	1	.
CG31858-RA	TTATGTAAATGAGGAGCGAAATGAACTGACTGTTTCGAAATTACTGGCTACCAATCTACCCGATTTGCC	69	-	chr2L	12497131	12497200	12497131..12497200	CG31858-RA,	FBgn0051858,	t-cup,	1	.
CG9335-RA	CGGGCCTCATCCAACAGTTTGCCATCTAAGCAAAAGATCCCCAGGTCGATTTTCAGTTGGAACGTGATA	69	+	chr2L	20856606	20856675	20856606..20856675	CG9335-RA,	FBgn0032895,	CG9335,	1	.
CG12455-RA	ACCAATTCAACGACTGTTGCCTCATCAACTTTTTCAACAACAGAGAGTATGGCCATCCATTCAACCCCT	69	+	chr2L	16244063	16244132	16244063..16244132	CG42818-RB,	FBgn0262000,	CG42818,	1	.
CG5112-RA	CCGAACGGGTTATGTACAAGATTCGCAAACATTTCGAGGCAGTGAGTGGAAAGGACGTGCGGCACG	66	+	chr3R	21318252	21318318	21318252..21318318	CG5112-RA,	FBgn0039341,	CG5112,	1	.
CG5705-RA	CCAGGAGGCAATGCTATTCGCCCAAGAATTGTACGAAATGTACACCGGCTATTTCGAGCACATGGGC	67	+	chr2L	13220508	13220575	13220508..13220575	CG5705-RA,	FBgn0032486,	CG5705,	1	.
CG6660-RA	GTACGCCTCGTATGCGTACTACATGCTCAAGTATCTGGATCTGCTCGACACGGTATTCATAGTGCTGCG	69	+	chr3R	18749527	18749658	18749527..18749579,18749641..18749658	CG6660-RA,	FBgn0039030,	CG6660,	1	.
CG6653-RA	TCAACTGGTTTGATCTCGACACCTATGGAGGACGTCTGGGTCACTTTGTGGATCAGTCCATGGCTTGGA	69	-	chr3R	6992994	6993063	6992994..6993063	CG6653-RA,	FBgn0040255,	Ugt86De,	1	.
CG18190-RA	TCCAGGAAGCCTTCAATCGCTTGAAGCTGGACAAAACGGTACCAATCGATCGACTGATCAAGGGTCGCT	69	-	chr2R	14739898	14739967	14739898..14739967	CG18190-RB,	FBgn0034403,	CG18190,	1	.
CG16726-RA	GCACTGTCTGCCCTATATAGTCATTGCCAAGCCGGTGTTTATGCCCAAATTGAACACGACCATTTGCGA	69	+	chr3L	9638498	9638567	9638498..9638567	CG33696-RA,	FBgn0053696,	CG33696,	1	.
CG12703-RA	TCGGCGTCAAGCAACTTTGGACCAAACAAGGGCATCATGTGCTTCGAGGACAACATTATCCGCTTCGAA	69	+	chrX	19651899	19651968	19651899..19651968	CG12703-RA,	FBgn0031069,	CG12703,	1	.
CG32564-RA	GGACTCCAAAATCTAACCTAACCTAACCGTACTCAACTATTTTTTTTCTAGTTCTAAAACGAATACCTT	69	+	chrX	17101770	17101839	17101770..17101839	CG32564-RA,	FBgn0052564,	CG32564,	1	.
CG5162-RA	GGCGCTGGCTTCAAACAAAATCAAGTCGAAATACTCGCCGGATATCAATAAAATGAACTTCCAAC	65	+	chrX	17109775	17109840	17109775..17109840	CG5162-RA,	FBgn0030828,	CG5162,	1	.
CG9968-RA	ACGAAGCCAGACAATTATGATCCACAACGTAGACTATAAGTGCACACAAATAATACCTGAACGGGATCA	69	-	chrX	16311665	16311734	16311665..16311734	CG9968-RA,CG9968-RB,	FBgn0030749,	Anxb11,	1	.
CG12370-RA	CCTATCTGTTGGTGCTAACAGGCCCGGAACAGGGTATCAGTCGTAATCTCTTCGAGGCCATAAGAGCCT	69	+	chr2R	8373272	8373341	8373272..8373341	CG12370-RA,CG12370-RB,	FBgn0033744,	Dh44-R2,	1	.
CG4449-RA	ACAGAGCGCTCCCTATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGCAATCG	69	-	chr3R	19076543	19076612	19076543..19076612	CG4449-RA,CG4449-RB,	FBgn0039065,	CG4449,	1	.
CG8134-RA	GTGCCTACACGCATAAAAATTGAATTAAATTAACAAACGAATGACCAGGTGAATGCAGCAATAAACAGA	69	+	chrX	15599601	15599670	15599601..15599670	CG8134-RA,	FBgn0030671,	CG8134,	1	.
CR30068-RA	TGTGCGCTGGACTTGTATTAGTTAATGCCAAAAATCGAAGCGGAAGTTGCACCCATACCTGCACACCCA	69	+	chr2R	10166726	10166795	10166726..10166795	CR30068-RA,CR30068-RB,	FBgn0047303,	CR30068,	1	.
CG9914-RA	GGCCAACTATTTCGAACGCTACTCGAACACCATCTATGCGGTTAGCGAGACAATGGGACCGACACCGA	68	-	chrX	16201189	16201257	16201189..16201257	CG9914-RA,	FBgn0030737,	CG9914,	1	.
CG8843-RA	CGCTCACGAGTGCTGCGATAATTTGGTTGGTGTCTACTCCGAGATCTACAGCATTTCACCGGCACTGCT	69	+	chr2L	3459847	3459916	3459847..3459916	CG8843-RA,	FBgn0031537,	sec5,	1	.
CG5444-RB	CGTTCATCCATTAAGAATGGCGATTCATTAGGCTCCATAGATCCATAAATCCCCTAATCCAATCTGAAC	69	+	chr3L	16114101	16114170	16114101..16114170	CG5444-RA,CG5444-RB,CG5444-RC,CG5444-RD,CG5444-RE,CG5444-RF,	FBgn0010280,	Taf4,	1	.
CG12508-RA	GCGGAGCCAATGACCTCGACCTCGGCCGCGACCTCGACCTCGACTTCGATCTCCGCCACCCAGGA	65	-	chr2L	19969872	19969937	19969872..19969937	CG13966-RA,CG13966-RB,CG12508-RA,	FBgn0032838,FBgn0040995,	CG13966,CG12508,	2	.
CG30485-RA	TGCACAGATTACTTGCTCACCTCACGGCCAACTGAGTCACAAAATCCGGGCATACGTCGAGGATTGGTT	69	+	chr2R	9739897	9739966	9739897..9739966	CG30485-RA,	FBgn0050485,	CG30485,	1	.
CG5091-RA	CGTTCCGGCACCTACAAAGTATCCAGATCTTTGGCCCCTTATTATTTCGGTTACAAGCTGTGGACACTT	69	+	chr2L	10381657	10381726	10381657..10381726	CG5091-RA,	FBgn0032234,	CG5091,	1	.
CG8417-RA	AGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAAACTCATTGGCAAGGAGGCTGT	69	+	chr3R	5586009	5586078	5586009..5586078	CG8417-RA,	FBgn0037744,	CG8417,	1	.
CG1441-RA	ATGATAAGTACTTTACTTGTTATGAAAAGCAGCTAATAAAAAAAATTGGTTTATGTATGGCGACG	65	-	chr2R	5786513	5786578	5786513..5786578				0	no match
CG13786-RA	CCCCAATCCGCCAAAAAGATTTTGGGGTGTGACACCTGTAGGATTCCTTCCGCGGAATCAGATAAGGCA	69	-	chr2L	7251034	7251103	7251034..7251103	CG13786-RA,	FBgn0031900,	CG13786,	1	.
CG5078-RA	TGGCTGTGCCCGAAACATTACAACAAAACGTTAGATCCACTGGATTGAGCTGGAAACAAGCGGATCCTT	69	+	chr3L	20499711	20499780	20499711..20499780	CG5078-RA,	FBgn0037005,	CG5078,	1	.
CG18259-RA	ACTAAAGCAACTAGATAATTTTTCTCATCATTTTCATCATCTCCGTAGTATTTAGTTCAACAACGTAGT	69	-	chrX	18675716	18675785	18675716..18675785	CG18259-RA,	FBgn0030956,	CG18259,	1	.
CG3273-RA	GCATCTGCTCTTCCCGTAGCGAACGAATGCTTTGTACAGCCAAATCTGGAGAAGGAGTACGAGGATCGC	69	+	chr2R	2547149	2547218	2547149..2547218	CG3273-RA,	FBgn0013732,	sced,	1	.
CG7213-RA	GCATCATCCGTATGCTCGGGTCGGACGTACGACATTAAGTACTCGGTGCTGACCTTCAACGACGTGC	67	-	chr3L	8233039	8233106	8233039..8233106	CG7213-RA,	FBgn0035861,	CG7213,	1	.
CG18811-RA	CGTCCAAGGAAAACAAACGACAGATGGGCAAAACTTGTATGTAACTTGGATCTGCCATTTCTTGCTTGA	69	-	chr3L	18661643	18661712	18661643..18661712	CG18811-RA,	FBgn0042134,	Capr,	1	.
CG18754-RA	CCAACCCATTTGTCTATTGGACGCCGAATTTCCCCTACAGGATTTGAATTTGCAAATCTCTGGCTGGGA	69	+	chr3R	19511216	19511285	19511216..19511285	CG18754-RB,	FBgn0042106,	CG18754,	1	.
CG12023-RA	CGCGATCGACGGCTAGCAGCTGAAAAACAAGCAAACATTTAAGCGAACATTACCTTTAAGACTTGCCCA	69	+	chr3L	1822779	1822848	1822779..1822848	CG12023-RA,	FBgn0027790,	GV1,	1	.
CG32704-RA	AGCTGGCCCTTAACGCTAGCAAGGATTTCAAGAAGTTCCGCATCTGGGACTATCCGATCAAGGAGCAGT	69	-	chrX	9127507	9127576	9127507..9127576	CG32704-RA,	FBgn0052704,	Ir8a,	1	.
CG7838-RA	CCTCCGCGGGAAAACTTTGTTCACCCCACCTCAAACGGAGATCAAACTGTTTTGAACGAAACGCTGGC	68	-	chr2R	1857984	1858052	1857984..1858052	CG7838-RA,	FBgn0025458,	BubR1,	1	.
CG3916-RA	TGCAGGCTTTGAACTATCGCACCATCTCGAACGAGGATTGCAATCAAAAGGGATTTCGGGTGACTCGGA	69	+	chr3R	8055700	8055769	8055700..8055769	CG3916-RA,	FBgn0038003,	CG3916,	1	.
CG12693-RB	TCGCAGCCTTTGAAGGGAAAAGGACTGCCCAATGACAATAGTCGCAATTTAAACAGCTCCAATCCGATT	69	-	chrX	4222497	4222566	4222497..4222566	CG12693-RB,	FBgn0029705,	CG12693,	1	.
CG16844-RA	ACGCGGGAGTCAAGCTCAGAATTCAACCACAAAAACCAACAACATGAAATTCCTATCACTCGCCTTCGT	69	+	chr2R	14275646	14275715	14275646..14275715	CG16844-RA,	FBgn0040736,	IM3,	1	.
CG16786-RA	AGGCTGGGTCGGAAATCAACCTGGACCTCGAGTTCGGAGATGAAGATAATACGGGCAAATTCGACGCAA	69	+	chr2R	19972884	19972953	19972884..19972953	CG16786-RB,CG16786-RA,	FBgn0034974,	CG16786,	1	.
CG32790-RA	AGCCATGCCATACAAGCACAAGCCAGCTCACCAAATCCCAATTCCACACTCTTCTCACGTTTCCACAGA	69	+	chrX	3972443	3972512	3972443..3972512	CG43284-RB,CG43284-RC,CG43284-RD,	FBgn0262973,	CG43284,	1	.
CG1056-RA	ACGAGGAGCACCATCCAGCGTCTGGGATGCATCAAATTTATATCGACGTATCGGCAGAAACAAAACGGA	69	+	chr3R	458652	458721	458652..458721	CG1056-RA,CG1056-RB,CG1056-RC,CG1056-RE,	FBgn0087012,	5-HT2,	1	.
CG9266-RB	GGTGGCCATCTTACCTGGCGCTTGATTGATTCCACCAGCCAAAAAATAAACACCTGGAACGACGCCAG	68	-	chr2L	20965965	20966033	20965965..20966033	CG42238-RA,CG42238-RB,	FBgn0250867,	CG42238,	1	.
CG14356-RA	GTCAGGTGTTGCCCATACAACCCGTGTTGATTTACCCCAAGCCACGTGAGAATCTCTACCAGGCG	65	-	chr3R	9956743	9956808	9956743..9956808	CG14356-RA,	FBgn0038207,	CG14356,	1	.
CG9473-RA	ACAATAAAAGCTCGCTACAAAGGACAGTTAATCAGCAAAACACTTACAGTATTAACGTGAAGGTGGAGC	69	-	chr3R	5593346	5593415	5593346..5593415	CG9473-RB,CG9473-RA,CG9473-RC,CG9473-RD,	FBgn0024330,	MED6,	1	.
CG16834-RA	AGCCTTTGGGTATCACGATATAGAGTGCAAGGTTCAGTTTCCATATGTGTGCCAGAGGGAACCAGCAGA	69	+	chr2L	11002553	11002622	11002553..11002622	CG16834-RB,	FBgn0040096,	lectin-33A,	1	.
CG6514-RA	CAACAGCATGGGTCAGATGTTCGACGATAGCGAACTGCAGGCTCTGATCGACGACAACGATCCGG	65	+	chr2L	5218544	5218609	5218544..5218609	CG6514-RA,	FBgn0031692,	TpnC25D,	1	.
CG4342-RA	ACGAGTGCACCGCGATACTGAAGACCATCAGTCATCAAATCAATAGCGAGCACAGCGAGCTCCAATCCC	69	-	chr3R	16207226	16207295	16207226..16207295	CG43224-RE,CG43224-RF,CG43224-RG,CG43224-RH,CG43224-RI,CG43224-RJ,	FBgn0262869,	mun,	1	.
CG31956-RA	ACCTGCCCCATGGTGGATACTATTTCGCATGAAGATTTCTCTTACTTTAGCGGAAATAAGGACGGAGCA	69	+	chr2L	3473814	3473883	3473814..3473883	CG31956-RA,CG31956-RB,	FBgn0051956,	pgant4,	1	.
CG32827-RA	TGGACCTTTTTCGGTATGGCTAAAGAGCTTATGGGCCAAATCTAACTGAAGGGTTATCCGCTGCTGGCT	69	+	chrX	19310511	19310580	19310511..19310580				0	no match
CG6569-RA	CCGAGACCTACAAGGAGGAGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATGAGGCCTCCA	69	-	chr3R	17692568	17692637	17692568..17692637	CG6569-RA,CG6569-RB,	FBgn0038909,	CG6569,	1	.
CG11985-RA	GGCCAGCTACATGGGTCACTACGATATTCTCAACTACTTTGCCATAGCGGAAAATGAATCGAAGGCACG	69	-	chr3R	4840798	4840867	4840798..4840867	CG11985-RA,	FBgn0040534,	CG11985,	1	.
CG13658-RA	TCTGGCGGACACTCTGAAAAAAATAGGCTTCAAAGGTGAAATGCCAACTCAGACAGGAGTGTGGGAGCA	69	+	chr3R	21114256	21114325	21114256..21114325	CG13658-RB,	FBgn0039315,	CG13658,	1	.
CG6803-RC	AGGGTAAGGATATCAAAGACATTTTCTAAATCCAATGCCAGACACAAAAGTCCGACACCAACATC	65	-	chr3R	11001843	11001908	11001843..11001908	CG6803-RC,CG553-RK,	FBgn0038294,	Mf,	1	.
CG32628-RA	CAGGTGCATCACCGAGTTTTTTCATTCAAAATTTTAGTCAAATTTAATCCGTTTTAGACCCGTCCGTTT	69	+	chrX	13611657	13611726	13611657..13611726	CG32628-RB,CG32628-RC,	FBgn0052628,	CG32628,	1	.
CG5561-RA	TGCCGGAAGCTCGATATTCCGATGAGTTGGGAATCGTTTCGGTATGAACTTAACGAGCGAACCTCCCAT	69	-	chr2L	1353647	1353716	1353647..1353716	CG5561-RA,	FBgn0031333,	CG5561,	1	.
CG14145-RA	CTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAAGTGCGTGCTGCAAAGGAAATCCGGAGG	65	+	chr3L	11055134	11055199	11055134..11055199	CG14145-RA,	FBgn0036118,	blos2,	1	.
CG9431-RA	CCGGCAGAGTTCCTTGCAATCAACAGGCTGCTCAAGAAAGAAGGGACAAATCGATGAACTCCAACCGGA	69	-	chr2L	13212855	13212924	13212855..13212924	CG9431-RA,	FBgn0032484,	kek4,	1	.
CG8508-RA	GCATCCCGAACAAGAGGGGCATCAGACTGGTTTAGATAGAAATCCTCAAGCTAAACACGCTTGCCCGG	68	-	chr3R	9011604	9011672	9011604..9011672	CG8508-RA,	FBgn0038123,	CG8508,	1	.
CG13169-RA	CTTCATCGACCTCGACTTCCAACTCACAATTGTCCAACATACTCTCCACCATTCTGATATCATCA	65	+	chr2R	8130668	8130733	8130668..8130733	CG13169-RA,	FBgn0263021,	CG43316,	1	.
CG8086-RB	GCCAACGGCCGGTCGCGTTGAAAACCTTCCAGATACCAGCTCCTAATGTCTACAAAATACCGACCGTCA	69	-	chr2L	8245193	8252266	8245193..8245223,8252227..8252266	CG8086-RA,CG8086-RB,	FBgn0032010,	CG8086,	1	.
CG30100-RA	ACGGCAATCACCTAAAGCTGACCGACAAGAACTACTTTCTGGGAAGAGTTCGCCACGAGTTTCGGGACA	69	+	chr2R	12179110	12179179	12179110..12179179	CG42372-RA,CG42372-RB,CG30100-RA,	FBgn0259718,FBgn0050100,	CG42372,CG30100,	2	.
CG10128-RE	ACCGTAGCATTTGTCAAGTCACACAAATTTTCCAACTGTCAGTTACCAAGGCGTGCAAGAACCACCCGA	69	-	chr2R	10491093	10491162	10491093..10491162	CG10128-RE,	FBgn0003742,	tra2,	1	.
CG3625-RB	ACGGCAGTCGTGCAATTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAGC	66	-	chr2L	285498	285564	285498..285564	CG3625-RB,	FBgn0031245,	CG3625,	1	.
CG32018-RB	GGCCGCGGATGTTATCCCCTGGATGACCATGTTCTATGTAAAAGCTGCAATGCAAAAAGGGTTCAGGCT	69	-	chr4	1078096	1078165	1078096..1078165	CG32018-RA,CG32018-RB,CG32018-RE,CG32018-RF,CG32018-RG,CG32018-RD,CG32018-RC,	FBgn0011642,	Zyx102EF,	1	.
CG6599-RA	CCCAAAGAGGGTCAAGCACCTGGGGAAAATCATGACGAGGAGGTAAAGGAACACCAAAATCCTCCAA	67	+	chr3R	23188831	23188898	23188831..23188898	CG42534-RC,	FBgn0260487,	CG42534,	1	.
CG1130-RA	AGCCACTTATGCCATGTAAGCATAGAATACATTGGGCGCGCTACAGAAATCTCTAAGGACTTGAAGCCA	69	+	chr3L	3988039	3988108	3988039..3988108	CG1130-RA,	FBgn0004880,	scrt,	1	.
CG10655-RA	TGGATGGTCAGTTCAGAACCATCGACCTCTCTCGTCTGAGCTTCGACCGGCTGATTGTTGACCAACCTA	69	-	chr2L	19049917	19049986	19049917..19049986	CG10655-RA,	FBgn0002021,	l(2)37Bb,	1	.
CG5126-RA	CCGCCTATGAGAATGTGCTTCGGACGAGTCACCTGGAAAGCGAAGTGGTAAAGAACTGGGTTCCCTGTT	69	-	chr2L	1183558	1183627	1183558..1183627	CG5126-RA,	FBgn0031320,	CG5126,	1	.
CG10083-RA	TGGCCCATGAGAGCGAACAGTTCTCGACTATCAAGCGATCACCCCATAGTAAATCGAACTCGCTGCAGT	69	-	chr3L	13477562	13477631	13477562..13477631	CG10083-RA,	FBgn0036372,	CG10083,	1	.
CG30142-RA	GGAGAAGGCTCCCGAAGAACTTTGTGCGTACAGTTTTAGACTGGTGATGTGTGCATTTAAGGCTGGCCA	69	+	chr2R	16392168	16392237	16392168..16392237	CG13421-RB,CG30142-RA,	FBgn0034509,FBgn0043534,	Obp57c,Obp57b,	2	.
CG9287-RA	GGGCGGTTGTCCCAAAAATGCCGGATCCCGAGTGCTCAACGAGATTGTTGACAATGACTTTGAGGGAAA	69	-	chr2L	8677771	8677840	8677771..8677840	CG9287-RA,	FBgn0032057,	CG9287,	1	.
CG8856-RA	CGGATTTTCACCACCCCAGAACAGGACCACGATACGATCACACCTTTGGAAACACTTCGGGTGGACACT	69	-	chr2R	8097966	8098035	8097966..8098035	CG8856-RA,CG8856-RB,	FBgn0020377,	Sr-CII,	1	.
CG10059-RA	CCAAGGTTCGCGCCATTCTAAACTACATCCTTGATCATACCGCCCAGAAGATTCCCATAAAGGACAAGG	69	-	chr3R	2980635	2980704	2980635..2980704	CG10059-RA,	FBgn0037481,	MAGE,	1	.
CG1263-RB	CGCCGCATTTGCAATATGGAGTTCGAGTACTAATCCCGTGAATTTGTCTTGCAGCAATGGGTCGCGTTA	69	+	chr3L	2587696	2587765	2587696..2587765	CG1263-RB,	FBgn0261602,	RpL8,	1	.
CG30094-RA	GGAGGAGGTTCCAAAAAGAAGAACGGAAAATAGGAGGGAGTATGATTATGTTAGTTTATTAAATCTTTA	69	+	chr2R	12030304	12030373	12030304..12030373	CG30094-RA,	FBgn0050094,	CG30094,	1	.
CG7204-RA	GGCTGGCAAGTTGAGAAGCACGATCCACTGTCCAACACCATATGCAAGTCCTGTCTGGAGGATGC	65	-	chr3L	21482967	21483032	21482967..21483032	CG7204-RA,	FBgn0037085,	Neu2,	1	.
CG5470-RA	GCAATGGCAACAACTTCAATACCCAAGCTCGATGTCACAAAATTTGCCTAGCCCAAGTCTCTTTGCCAA	69	+	chr3R	11752211	11752280	11752211..11752280	CG34276-RA,	FBgn0085305,	CG34276,	1	.
CG11177-RA	GGTAGTTGTGCCCAAAACAAAGCGTTCAGCAATAGAGCCCTATGATCGATGATTGGCAAATCCTCTCGA	69	+	chrX	13507070	13507139	13507070..13507139	CG11177-RA,	FBgn0030501,	BthD,	1	.
CG8523-RA	GCCCGTTCCCTGATGTTCTTTGCCTATGCTGCTTGCATGTATTATGGAACATGGTGTGTGATTCACCGC	69	+	chr2R	10138694	10138763	10138694..10138763	CG8523-RA,	FBgn0010241,	Mdr50,	1	.
CG8472-RA	GCAACGGCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAGGACACCGATAGCG	69	+	chr2R	8156697	8156766	8156697..8156766	CG8472-RA,CG8472-RB,CG8472-RC,CG8472-RD,	FBgn0000253,	Cam,	1	.
CG9986-RA	ACGCATGTTATTTTTCACCTGATTTCGGACGAACCCATCAACAGTCCCAGTGAGATCAACTCGCGGCAT	69	+	chr3R	24433163	24433232	24433163..24433232	CG9986-RA,	FBgn0039589,	CG9986,	1	.
CG13950-RA	GAACGTTTGGAAAGCAAAGGTCCTAACGGAGGTCCCATTCGGACACGTCCTCATCGTCAGTGGGC	65	+	chr2L	860322	860387	860322..860387	CG13950-RA,	FBgn0031289,	CG13950,	1	.
CG3956-RA	TTCAGCTATAGTATTCTAAGTTTAAGTTCATGTATATTGCCTCATTGTCACACGCAGCATTTTACCAAA	69	-	chr2L	15476720	15476789	15476720..15476789	CG3956-RA,	FBgn0003448,	sna,	1	.
CG16775-RA	GTCCACAACACCCCGCCTCTCAACAATCGAATCATGTTCTCAGCCAAGAGTTCTGCAATTGTGGCCGTA	69	-	chr3L	17879705	17879774	17879705..17879774				0	no match
CG7070-RA	GTGTTCGTCGATGACGGTCTGATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCTG	65	+	chr3R	18196985	18197050	18196985..18197050	CG7070-RB,CG7070-RA,	FBgn0003178,	PyK,	1	.
CG30492-RC	AGCGATGAATCCGATACGGTTCGCATTTACGACTTTAACAAGCAGGAAACGACGGTTATCAGGGCTGCT	69	+	chr2R	3537968	3538037	3537968..3538037	CG43340-RH,CG43340-RA,CG43340-RF,CG43340-RD,	FBgn0263077,	CG43340,	1	.
CG12027-RA	AAAAATGTTTAGCCGTTTCCTAAAACCAAGCCTAGTTTTATGTAGGAGTGTGAGCAATACCGCATCCCT	69	-	chr3L	5012030	5012099	5012030..5012099	CG12027-RA,	FBgn0035585,	CG12027,	1	.
CG13653-RA	CAAGACGCGCCAGAACACTGAGTACGGATCCTTCCAGGACCTCATTATGCAGGCCAAGATGAACG	65	+	chr3R	21021930	21021995	21021930..21021995	CG13653-RA,	FBgn0039288,	CG13653,	1	.
CG18132-RA	TGAGTGTGAAGGCAAGATCCGCAGATCAGTGCACTCCTGGCACGATACTTAAGCTGAGAGTGGACAATT	69	-	chr2L	1517260	1517329	1517260..1517329	CG18132-RA,	FBgn0031345,	CG18132,	1	.
CG12920-RA	ATCGGACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGACCAAGTGGCC	65	+	chr2R	5957768	5957833	5957768..5957833	CG12920-RA,	FBgn0033481,	CG12920,	1	.
CG14220-RA	CGCCCAGAAGGAGTACGACGAAAAGATGATGGACCTCAAAGACAACCTGATCTCGGACTTCGAGG	65	-	chrX	19495123	19495188	19495123..19495188	CG14220-RA,CG14220-RB,	FBgn0031036,	CG14220,	1	.
CG12111-RA	GGAACCGAAAACCTTCAAGTTCACCTACATTAAGTGGTAGTTTTCGATTGGTTCTAAAATAAAACCAGC	69	-	chrX	8464293	8464362	8464293..8464362	CG12111-RA,	FBgn0030050,	CG12111,	1	.
CG13078-RA	ACTGTGCGTTACTCCCGGAATTACAAGACTGCCTTTCACGTGGTCCTTCAGATCCTTGGGGGAGG	65	+	chr2L	19564559	19564624	19564559..19564624	CG13078-RA,	FBgn0032809,	CG13078,	1	.
CG12531-RA	CATCGCCATCACAGTGAACATCTACCTGATATTCAAGCTGAGCATCCTCACGCTGGTACGCTTCACCGT	69	+	chrX	19619791	19619860	19619791..19619860	CG12531-RA,	FBgn0031064,	CG12531,	1	.
CG9792-RA	AGTCCGAGATTCATGAGCACCGCTTTGTTCTGATGGATGGAGTGGTCGGTTTGACTTTCGATGAGCGC	68	-	chr3R	9236550	9236618	9236550..9236618	CG9792-RA,	FBgn0041711,	yellow-e,	1	.
CG14244-RA	CTGCAAATCCCCCAGCGTTATTGTTTGGACCCCACCAAGTACTGGCTCTGCAGCGCCATCAACTC	65	+	chr3R	22552045	22552110	22552045..22552110	CG14244-RB,	FBgn0040607,	CG14244,	1	.
CG8538-RA	GCCAGCTCAGTCTCAGCCTCAAGAAGACGATGAATGGTCGGACTTTGTCTCTGTTCCAGTCACCCAACA	69	-	chr3R	10148033	10148102	10148033..10148102	CG8538-RB,	FBgn0038223,	CG8538,	1	.
CG4502-RA	TCTCTGTTTCATCTACTTGTCAAGTAACGAACGATTTCAATTGCAAACCATCCAAAGCAACAAGACGAA	69	-	chr2L	7195350	7195419	7195350..7195419	CG4502-RB,CG4502-RA,	FBgn0031896,	CG4502,	1	.
CG5737-RA	AAGAAGCTCTGCACCTACAAGAACTGCAAGTGCGCCAAGTGTGTCCTGATCTTTGAGAGGCAGCG	65	+	chr3R	16899902	16899967	16899902..16899967	CG5737-RA,	FBgn0038851,	dmrt93B,	1	.
CG6617-RA	AATTTCCAGCGTCATTTGTGCATTGCAAGTTAGTAAACAATAAAAGCGCATAAACAGGGCTAGGAAAAG	69	-	chrX	18544389	18544458	18544389..18544458	CG6617-RA,	FBgn0030944,	CG6617,	1	.
CG3991-RD	CTACAATCAGTGCATAGTGGGAGGTCGTAAATACGTCTCGAGTCCGCTAAGGCTGTCCACTCGGGTGCT	69	-	chr2R	9041755	9041824	9041755..9041824	CG3991-RD,CG3991-RA,	FBgn0020370,	TppII,	1	.
CG30338-RA	AACCCGCTACTAGCCTTCTATCCCATTTGGAGTATGTGGTCAAATTGACTCTACCAGGCAAACAGTGCG	69	+	chr2R	5486248	5486317	5486248..5486317	CG30338-RA,	FBgn0050338,	CG30338,	1	.
CG7238-RA	ACGAGCTCATCGATCCCATGTACATGGCCCAACTACTGGACAGACACTTCTTCCCGCGCTGGATG	65	+	chr2L	5723167	5723232	5723167..5723232	CG7238-RA,	FBgn0024191,	sip1,	1	.
CG9423-RA	AGATAAGTTAAGCGGAATTTTATAAGAACAAGTGTGTCGCGTTTCAAGACCAGGCATTCGAGTTGTCCG	69	-	chr3R	5400580	5400649	5400580..5400649	CG9423-RA,CG9423-RB,CG9423-RC,	FBgn0027338,	Kap-alpha3,	1	.
CG8961-RA	GCCCATCCAAGAAGACAACATACCTGGAACATGTTTTGACACTCCTACAAAGCCCATACCGAGCTCATC	69	-	chr2R	12943433	12943502	12943433..12943502	CG8961-RA,	FBgn0086350,	tef,	1	.
CG3896-RA	TGGGCCAGCGAGATACCCAAGTCTGTGATGAATCTGCGGAAGGTAGACTTCTTCTGGATCAACAGGGAT	69	+	chr2R	12203160	12203229	12203160..12203229	CG34399-RC,	FBgn0085428,	Nox,	1	.
CG4842-RA	AGGCTTCCTTACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAACAAGAC	66	+	chr3L	16362276	16362342	16362276..16362342	CG4842-RA,	FBgn0036620,	CG4842,	1	.
CG6441-RA	CGATCAGGCGAAGTTGGCGAACAGACCTGAGACCGTTCTAATTGCCCAATTCCTCATCCGGGTCAAC	67	+	chr2L	7475355	7475422	7475355..7475422	CG6441-RA,CG6441-RC,	FBgn0031920,	CG6441,	1	.
CG5725-RA	GTAAATGCATGAAATTACGTATGTATGGATAAAGTGCCTGCTAGAAAGCAACGAATTTTGGCCCG	65	+	chr3L	20384472	20384537	20384472..20384537	CG5725-RD,CG5725-RB,CG5725-RA,CG5725-RC,CG5725-RE,CG5725-RF,CG5725-RG,	FBgn0011205,	fbl,	1	.
CG8183-RB	ACCCAAAAACGAAACTGAAACTGAAATCCAACAGAAAACAGTTGGGGACGTGTCAAAGGTCAAGCCCAA	69	-	chr2R	11404698	11404767	11404698..11404767	CG8183-RB,	FBgn0019968,	Khc-73,	1	.
CG4633-RA	AGCGTGTGTGATAGCGTGGTCAAGGCTCGCTGTTGTGTACCAGAAAAGTGTATCACGGAGAAATT	65	+	chr3L	5142609	5142674	5142609..5142674	CG4633-RA,	FBgn0028962,	Aats-ala-m,	1	.
CG12997-RA	GGGATTTCCAACTGGAGAGACTGGACAGTGCACTGGATAATCCCGAGCTGCCTCCTGACTTCCAG	65	+	chrX	17117383	17117448	17117383..17117448	,CG34327-RA	,FBgn0085356	,CG34327	1	.
CG14128-RA	AAGTACCACGTTTCCATGAGAGTCCTTACCGTTCCCCCTCCTTCTCAGGCGAGGGTCAAATCGAG	65	+	chr3L	11873779	11873844	11873779..11873844	CG14128-RE,	FBgn0036218,	CG14128,	1	.
CG13777-RA	GGATGCCTTTTGCGAGTGAAGTAACATTTTTATTTAAGCACTACGCGAGAACAAGTTGAATAACGAAAC	69	+	chr2L	7054631	7054700	7054631..7054700	CG43227-RA,CG43227-RC,CG43227-RB,CG43227-RD,CG43227-RE,CG43227-RF,	FBgn0262872,	milt,	1	.
CR32926-RA	TGTCCTCATCCTGACCACTTATTGGCCACAATTGGAAGCTGGCTTCGACGGGACATTAGACGTTGGTCT	69	+	chr3R	26037266	26037396	26037266..26037324,26037385..26037396	CR32926-RA,	FBgn0000280,	Cec-Psi1,	1	.
CG4067-RA	CCGGCTCCAGAAATTGGGAATCACCAAAACCGATCCCGATACCCTTACCGCTGACGAATACGGACC	66	+	chr3R	6527480	6527546	6527480..6527546	CG4067-RB,CG4067-RA,CG4067-RC,CG4067-RD,CG4067-RE,	FBgn0020385,	pug,	1	.
CG10009-RA	AGGAAGAGGACGAGACCACAGAAAGTGAACCGGAGAAGGAAACCGACAAAAAGGCCACCAAATAAGGCT	69	-	chr3R	24423899	24423968	24423899..24423968	CG10009-RA,	FBgn0026400,	Noa36,	1	.
CG9325-RF	AATGCAATTCACACAACAATTTGTATGATAAACGAGAATGAGGTTTGCAGGTGTACACGCAATATCCGA	69	-	chr2R	15285789	15285858	15285789..15285858	CG9325-RL,CG9325-RM,CG9325-RO,	FBgn0004873,	hts,	1	.
CG8007-RA	TGCTGGGAGTGGTGTTCTTTACGTTCGTAATCCTCTGGTCGCCATTCTTCGTCCTCAATCTCCTGCCC	68	+	chr3R	4452486	4452554	4452486..4452554	CG42796-RD,	FBgn0261929,	CG42796,	1	.
CG5174-RA	GGCATTTCGTCGAAACTGTCGCAAATGAAAAACTCCGAATCGATGCGTTCTATCGAGGCTTCGGTGGGC	69	+	chr2R	14312449	14312518	14312449..14312518	CG5174-RJ,CG5174-RA,CG5174-RH,CG5174-RG,CG5174-RB,CG5174-RL,CG5174-RM,CG5174-RN,CG5174-RO,	FBgn0034345,	CG5174,	1	.
CG5050-RA	CCATGAAGACCAAAAACGAACTGCACGTATGTGGCACATTGATGCGTGTGGAGGAAAAACGAAACAGGG	69	+	chr2L	17453515	17453584	17453515..17453584	CG5050-RA,CG5050-RB,	FBgn0032637,	CG5050,	1	.
CG18030-RA	ACGAATTTAGCAAATTTTAAAGAACACTCTGTCTGCAGTCATTTAGATTACGGATGAGAGACTCCAAAT	69	+	chr3R	26315527	26315596	26315527..26315596	CG18030-RA,	FBgn0039778,	Jon99Fi,	1	.
CG30393-RA	CCGAGAGTGATGCCGAGTTTGCGATCTTGAATCTGGATTGCAACGAAGGTTTGGAGAGCTCGGTGACCA	69	-	chr2R	17154884	17154953	17154884..17154953	CG30393-RA,	FBgn0050393,	CG30393,	1	.
CG13227-RA	AAGTTGGAGAAGGAATACGACATCGAAATGGATCACAAGTGGATAATATTTTTCTTCAGCATTGC	65	+	chr2R	7122767	7122832	7122767..7122832	CG13227-RA,	FBgn0033589,	CG13227,	1	.
CG31898-RA	TGCCCCTTGCTATCCAGATTTCCCCAAGAACTCCTCCCTCAGTTTCATATGAAGGACGTGAGACAAGCT	69	+	chr2L	8400800	8400869	8400800..8400869	CG31898-RA,	FBgn0051898,	CG31898,	1	.
CG5184-RA	TGGGTGGGCTGAACATCGTTTCCATTACCGACAACACACATGTTTCCTTCAATCCTCCAAGACCCCGAA	69	+	chr3R	12899371	12899440	12899371..12899440	CG5184-RA,	FBgn0038474,	mRpS11,	1	.
CG12799-RA	CAACATCGAGAGTAGCGATGAGTCCCTGCTGATGTGGACGGGTCTTTTGGTTCCGGAAAAGGCGC	65	-	chr3R	3344947	3345012	3344947..3345012	CG12799-RA,	FBgn0017456,	Ubc84D,	1	.
CG5892-RA	GGTTTCCTGTTCGGTTACTTCCTGCATACGATCCGTGGAAAAGCGATCAAGCTGAGCCGACCTGCTG	67	+	chr3R	17070288	17070355	17070288..17070355	CG5892-RA,	FBgn0038873,	CG5892,	1	.
CG13833-RA	CGCAGCTGACGCATACCATAGGATTTGGCGACGTATATCCACTGTTCACCGGAGAGGAGGTCGCC	65	-	chr3R	18859227	18859292	18859227..18859292	CG13833-RA,	FBgn0039040,	CG13833,	1	.
CG1903-RB	ACTGGACGGAACAGTATGATGCCTCGGTTAACACCTGTTCGCACGCATACTGGAACGGCAACTGTAGAA	69	-	chrX	13090655	13090724	13090655..13090724	CG1903-RB,CG1903-RC,CG1903-RD,	FBgn0005410,	sno,	1	.
CG5585-RA	AAGAGCGGGAGTCAGAGTTCGACATTGCGGACGAAGACAAGTCTGTGGATCTGAATGCAGACGCG	65	-	chr3L	20339626	20339691	20339626..20339691	CG5585-RA,	FBgn0036973,	CG5585,	1	.
CG5556-RA	GGAACCGCCTCCAAAAAAACCGAAGGCTTCAAGTCATCGTAGCTCCCAAAAATCTGCGGGAAGTC	65	-	chr2L	1351951	1352016	1351951..1352016	CG5556-RA,	FBgn0031332,	CG5556,	1	.
CG9297-RB	ACAAAGCATAACCCTAAAATCCGACCCCTCATTGGCTAATAGCAGCGTATAATTCCCATGTTCCCGGTT	69	+	chr3R	9604608	9604677	9604608..9604677	CG9297-RB,CG9297-RA,	FBgn0038181,	CG9297,	1	.
CG31906-RA	AGGCTGCCAAATTGGATGGATCCTGCTCAAACAACAGTCAGATTAGTCCGGCCAACATAACACCCGTCT	69	-	chr2L	7224852	7224921	7224852..7224921	CG31906-RA,	FBgn0259111,	Ndae1,	1	.
CR31271-RA	TGACAAGTGCTGGCTAAACGTCTGTGGTTATCGCAATCATTTTCGATTTTCGGGCCCCATCCCTGTTGA	69	+	chr3R	12681578	12681647	12681578..12681647	CR31271-RA,CR31271-RB,	FBgn0020546,	iab-4,	1	.
CG32940-RA	GGAGGTAGAAGAAAAAACTCCTAGCACAGTACTAAGGGAAATCTGTGAGAGACCCACAACCGTGGCGTC	69	-	chr3R	4601529	4601598	4601529..4601598	CG33720-RA,CG33720-RB,CG42599-RA,	FBgn0046874,FBgn0261015,	Pif1B,Pif1A,	2	.
CG10605-RA	GCTACCGCATAAGATCTTTAGGAAACATCACGTTGTATTAGTGCTAGTATCCTGTGAATTTCCAGGAGC	69	+	chr3L	12614444	12614513	12614444..12614513	CG10605-RA,	FBgn0015919,	caup,	1	.
CG6606-RA	CCGCGAACAGCAAAATTCAAGTGCTTTCTAAAACGTATTGCTAAGAGGGAAACTAAGTGCACGCGTAAA	69	-	chrX	18530151	18530220	18530151..18530220	CG6606-RA,CG6606-RB,	FBgn0027335,	Rip11,	1	.
CG6577-RA	ACCTGCCATCGACTTACTTGTACACAACTTCTCCCTCCGATGAGGTCGTGATTTGTGCCACCTTCTCGG	69	-	chr3L	10258228	10258297	10258228..10258297	CG6577-RA,	FBgn0011569,	can,	1	.
CG12071-RA	CGCCGTTTCGCAATTTCAGACCCTCCAGAGTAGTATCCCCACATAGACCCGTATGCAAACCGAACGTGT	69	-	chr3R	26703041	26703110	26703041..26703110	CG12071-RB,CG12071-RA,	FBgn0039808,	CG12071,	1	.
CG13934-RA	GAAATCATGACGAGGAAAGGCTCCACTACTCGCATCAGTACCACATCTCCGACGTGGCCAGTCGG	65	-	chr3L	1824659	1825074	1824659..1824704,1825054..1825074	CG13934-RB,CG13934-RC,	FBgn0035279,	Cpr62Ba,	1	.
CG8121-RA	CCATCCACCAGTTTAGTGCCTTAGAGATGCGCCTCTCGAATACCACAAATTTTAACCGCGAATCAGCGT	69	+	chr3R	5162726	5162795	5162726..5162795	CG8121-RA,CG8121-RC,CG8121-RB,	FBgn0037680,	CG8121,	1	.
CG6680-RA	GTCAGCCATATCCAGTCCATGAGAAGCAACTTCGACACGGATGTCCTGGTCAGCATTTCGCAGGG	65	+	chr3L	20311626	20311691	20311626..20311691	CG6680-RA,CG6680-RB,	FBgn0262057,	Spn77Ba,	1	.
CG30151-RA	GGCCAGGAGGTCCATACGAAAGTACTGCTCAAGAGGGTTTAATCTCTGGAGTGGATACGGGAGGTCCCT	69	-	chr2R	16416734	16416803	16416734..16416803	CG30151-RA,	FBgn0050151,	CG30151,	1	.
CG12758-RB	CAGATTCCAATGGAGTATTTGATGAGAATATTTCGACCGGATGGAACCACGACAAAATGAAAGGCTGCC	69	+	chr2R	14846182	14846251	14846182..14846251	CG12758-RB,CG12758-RA,CG12758-RC,CG12758-RD,CG12758-RE,	FBgn0034408,	sano,	1	.
CG12478-RA	AAATGGCCGGTCACATGAACCTGCTGAATCCGTTCGTCTTTAATCAGTTCAGTCCGTACGGCGCC	65	-	chr3L	13535183	13535248	13535183..13535248	CG12478-RA,CG12478-RD,CG12478-RI,CG12478-RF,CG12478-RB,CG12478-RK,CG12478-RC,CG12478-RL,CG12478-RH,CG12478-RE,CG12478-RG,CG12478-RJ,CG12478-RM,	FBgn0262350,	bru-3,	1	.
CG30437-RA	CCCAATTTGTCACATCCTTTCCATTTGCACGGTTACGGGTTCAGTGTCATTGGTATTGGCCGTTCTCCT	69	+	chr2R	1334047	1334116	1334047..1334116	CG42345-RA,CG42345-RF,	FBgn0259247,	CG42345,	1	.
CG13154-RA	AACGCTGCCAACAAGCACATCAACCTCAATCTCAAGTGGCTTAACACCTACGAGAGGGCCATGGG	65	-	chr2R	8314729	8314794	8314729..8314794	CG13154-RA,	FBgn0033736,	CG13154,	1	.
CG11254-RC	CGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATCCATCTACAGCACCATGATTGACCCCGGTCAGA	69	+	chr3L	22718172	22718241	22718172..22718241	CG11254-RA,CG11254-RC,CG11254-RB,	FBgn0016034,	mael,	1	.
CG6697-RA	CCATCGCAAGTGGGAGCACTACCATCCCAAGAAGAACTCCTGAACTTATCCTCGGTTGCAAACATTTGT	69	+	chr3R	18888358	18888427	18888358..18888427	CG6697-RA,	FBgn0027526,	CG6697,	1	.
CG12359-RA	GCAGCACTTGTTCAACTTGCTCATCTTCTGACACTGAGCCAATGTTGGTTAAAGATAGCCCGGAGGTCA	69	-	chrX	19098157	19098226	19098157..19098226	CG12359-RA,	FBgn0027603,	Ulp1,	1	.
CG12876-RA	GTCAATCGCATGGCAGAGCCTCAGATGAGTCTGGATGGTGGGCAGACAAGATGGGTGGTATTCGG	65	-	chr3R	23522312	23522377	23522312..23522377	CG12876-RA,	FBgn0086346,	ALiX,	1	.
CG32750-RA	GGTGGTCAATGTCAAGGAGCGTGTTTCGGAGCAGTGTACTTCGGATGAGACATGTTCCAGTCGTGGCTA	69	-	chrX	6090013	6090082	6090013..6090082	CG32750-RA,	FBgn0052750,	CG32750,	1	.
CG8568-RA	AGCCAGAGATTCAACAGCCTTCAGAAAATACACTGGATGAAGATGAACCGATGGGCTATCAACCCCCGA	69	-	chrX	17344355	17344424	17344355..17344424	CG8568-RA,	FBgn0030841,	CG8568,	1	.
CG9508-RA	GCGGGTTTACAGTGCCTGAACCGGAACAGTACACAGTATCTGGACGAGCGTATTGCAGACATTGCTGGA	69	-	chr2L	6383802	6383871	6383802..6383871	CG9508-RA,	FBgn0259716,	CG42370,	1	.
CG31257-RA	GCCATGGGAGTTTCTTTGTTGCCAAAGAGTCGGCACATCGCGGAGTGTATCAATGGGCTTCGTAGC	66	+	chr3R	13080601	13080667	13080601..13080667				0	no match
CG17982-RA	CCAAGGAGCCCCTGAACATACCCCTGCTGACAAGGTTGGAGAGCGGCATGAAGAAGCTGGATATAG	66	-	chrX	8037148	8037214	8037148..8037214	CG17982-RA,	FBgn0030006,	CG17982,	1	.
CG13527-RA	ATCAAGTGGACGTGGTTCTCATGGACAACGCGGTGTGTAAGACGTACTTCCGACACTACGGGGATGGAA	69	+	chr2R	18651986	18652055	18651986..18652055	CG13527-RA,	FBgn0034776,	CG13527,	1	.
CG5267-RA	CCGAGCCAACCTTGGAGTCTGAGTTGACCTGGCCCAATGAACTTCCGGTAACAGTAACTAATGGCATGA	69	+	chr2R	12642716	12642785	12642716..12642785	CG5267-RA,	FBgn0034154,	CG5267,	1	.
CG4266-RA	GGGAGCTTGTGGGGGAGTAGAAGCCCAATCATAAACAAATCAGCAATCGCAAAACTTGAAATGTTTATT	69	-	chr2R	17049356	17049425	17049356..17049425	CG4266-RA,CG4266-RB,	FBgn0034598,	CG4266,	1	.
CG30457-RA	GTCCACGTTCCAAGTAACATACATCCACAATGAAATTCCTGGTTGTCGCCGTCGCCCTCTTGGCCG	66	-	chr2R	13048191	13048319	13048191..13048225,13048287..13048319	CG30457-RA,	FBgn0050457,	CG30457,	1	.
CG32228-RA	GCCTGTTCGGAAAAAAAGTGCCTGCATTATATGCCGAACTATTAGAGGCAATCACGGAGCAAAGGAAGC	69	+	chr3L	20261330	20261399	20261330..20261399	CG32228-RA,	FBgn0052228,	CG32228,	1	.
CG18586-RA	CCGAGGGGATCAGTGAGGATCCAGGATGTTCTGACCACTCCAGTGATGCAGAATTTCCAACCACTTCGT	69	+	chr3L	5867290	5867359	5867290..5867359	CG18586-RB,	FBgn0035642,	CG18586,	1	.
CG13475-RA	AGGTTTTGCCACTTTACCGTCTTCTGAAGACTTAATTTCTCCCCTCCAACTCTCTTACTTATTTCCCCA	69	-	chr3L	14576720	14576789	14576720..14576789	CG13475-RA,CG13475-RB,	FBgn0040318,	HGTX,	1	.
CG1214-RA	GGCGTATGGTGCATATTCAGCGCCTTTGGAATCGCCTTCAACTTGGTGAATACGGTCACAGCTCAA	66	+	chr3L	1386853	1386919	1386853..1386919	CG1214-RA,	FBgn0003295,	ru,	1	.
CG5421-RA	CCATCGCAGGGCAATTGGTACCTTACGCGCATGATCTTCATGAACAACACCCACTATCCACGCGATCTC	69	-	chr2L	12446874	12446943	12446874..12446943	CG5421-RA,	FBgn0032434,	CG5421,	1	.
CG14782-RA	AGCTGCGCAAGATGACGGCATTCAAGGCTCGTCCGAATCCATTTAAATAGTGCTCGACGGAACCAATCG	69	+	chrX	1375083	1375152	1375083..1375152	CG14782-RA,	FBgn0025381,	CG14782,	1	.
CG30008-RA	TAAGGATCCCTGGTACATGATCACAGTGCTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCA	69	+	chr2R	5777596	5777665	5777596..5777665	CG30008-RA,	FBgn0050008,	CG30008,	1	.
CG10712-RB	ACGGCACTGTTTACCAGGTAGCGGGAAAAAATGCGGAGGGACAAACTATTCTCGTTACGCAGGGC	65	-	chr3L	22868557	22868622	22868557..22868622	CG10712-RB,CG10712-RC,CG10712-RA,	FBgn0044324,	Chro,	1	.
CG32781-RB	CAAGTTTCGTTTCTAGGGGGTCACCTTACTTTTGTTGATCTGTCTGCCATTCATTACTCACTCAA	65	+	chrX	3656911	3656976	3656911..3656976				0	no match
CG4211-RA	GATCTGGATCTTGGTCTGGATATCTCATCTCATTCGATGTCCACTAATGGATGATCCTTCTGTTGTGCA	69	+	chrX	16261603	16261672	16261603..16261672	CG4211-RA,CG4211-RC,	FBgn0004227,	nonA,	1	.
CG32712-RA	ATCTTAGCCGGCAGGAGTTATCGTATTTGCGCTGGACGGTGGTGTTCACGCTGCTCTACTCCTTC	65	-	chrX	8327490	8327555	8327490..8327555	CG32712-RB,	FBgn0052712,	CG32712,	1	.
CG4730-RA	ACTTTCCCTATTCCTGTGATCTCTGTGATCGTCGTTTCGCACAGCGATCCCATTTGACTGTCCACCAGC	69	-	chr3R	21503403	21503472	21503403..21503472	CG4730-RA,	FBgn0039355,	CG4730,	1	.
CG14402-RA	TGACCCCGTCAATTGAGCGTAGGATTTGCTGGATGCTAAGACAAATTGCTACTAAATTCGGGTGCCGCA	69	+	chr2L	20850712	20850781	20850712..20850781	CG14402-RA,	FBgn0032894,	CG14402,	1	.
CG7863-RA	ACGATTTCAACGAGCCTGGGTATCTCGAAATCAAGCCTGACCAAGAACAAACTCAAGCCCGCCCG	65	-	chr2R	1909606	1909671	1909606..1909671	CG7863-RA,	FBgn0033051,	dream,	1	.
CG2999-RA	TCTGAGCGGGGTAATGGACATATCAAAAGAAGTAGAAAAAAACTTGTCACCCAAGCAATGCGCAGTGCT	69	-	chr4	894012	894081	894012..894081	CG2999-RA,CG2999-RC,CG2999-RB,	FBgn0025726,	unc-13,	1	.
CG13587-RA	GGCCTTGAACTACGCTCCAGGAGGACCGAAAAGGAGGCTAAATGCATTTGATCAGAGGTCCTTTGGCAA	69	+	chr2R	20485723	20485792	20485723..20485792	CG13587-RA,	FBgn0035031,	CG13587,	1	.
CG30196-RA	TGGCTGTTTCATTGGACGCGATATCACTCTGAGTTGGTACAAGAGGACCCTCTTTCGGCTGCAACG	66	-	chr2R	18542466	18542532	18542466..18542532	CG30196-RA,	FBgn0050196,	CG30196,	1	.
CG7738-RA	TCTGTATCAGCAACCCATTGAATCAAGCAGAAAGCAAGATGCGTCTAACACTTCTGGCCCTCATCGGT	68	+	chr2R	7135654	7135722	7135654..7135722	CG34227-RA,	FBgn0085256,	CG34227,	1	.
CG7073-RB	GCCGCCACTAGTGTTAGTTTAGCTGCGTATATTAATTGATGACGCGTAAGTCAAAAGGCTATTCAACAC	69	+	chr3R	18184008	18184077	18184008..18184077	CG7073-RB,	FBgn0038947,	sar1,	1	.
CG14049-RA	ACGGAATACGAACAGAGACGCATGATGTGCTCCACCGGCCTCAGCGATGTGATACAGAAGATATGCGT	68	-	chrX	2225990	2226058	2225990..2226058	CG14049-RA,CG14049-RB,CG14049-RC,	FBgn0044047,	Ilp6,	1	.
CG1443-RA	TCGTATCCATTGTAGGGCATATCTTGAACTCCCCAATCTTTCGGTCAAGCTCGTAACACTTTCGTTTCC	69	-	chr3R	24818914	24818983	24818914..24818983	CG1443-RA,	FBgn0039620,	CG1443,	1	.
CG18412-RA	AGCTTTCAGAATCGTTTCCTATTTTGGGAGCCTCAACAGAAGTACCTCCAATGTCACTGCCAGTCCAA	68	-	chrX	2021228	2021296	2021228..2021296	CG18412-RA,CG18412-RB,	FBgn0004861,	ph-p,	1	.
CR32999-RA	ACTCTGGTTTCTCTTCAATTGTCGAATAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGG	65	.	.	.	.	.	CR32880-RA,CR32908-RA,CR32914-RA,CR32881-RA,CR32877-RA,CR32999-RA,CR31853-RA,	FBgn0043021,FBgn0003938,FBgn0003933,FBgn0043022,FBgn0003936,FBgn0003934,FBgn0003935,	snRNA:U5:38ABb,snRNA:U5:63BC,snRNA:U5:14B,snRNA:U5:38ABa,snRNA:U5:35D,snRNA:U5:23D,snRNA:U5:34A,	7	.
CG1307-RB	GCTAAGATTTACGTTATTACATTAACTGTGAACCGAGCTATTAAACATTAAACGATTGACAGTCCGGC	68	-	chr3R	2482026	2482094	2482026..2482094	CG1307-RC,	FBgn0026566,	CG1307,	1	.
CG31841-RA	TCAGGACAAAACAGCACCCTCAAGATCAACACAAACGTGAAAGATATTGAAGCTGGGGTTGTGGC	65	+	chr2L	13957912	13957977	13957912..13957977	CG42282-RD,CG42282-RE,	FBgn0261514,	nimA,	1	.
CG4258-RA	GCCACCCTTAAGTCCATTGAACTGCTCACCGATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCC	69	-	chr2L	869254	869323	869254..869323	CG4258-RA,	FBgn0020305,	dbe,	1	.
CG11438-RA	CGTCATGTTCGGCTGGTACGTATCGCTGACTCGGATCATCGACTATTACCACCACTGGAGCGACGT	66	+	chr3L	22460671	22460737	22460671..22460737	CG11438-RA,	FBgn0037164,	CG11438,	1	.
CG5632-RA	ATGCTGGAGCCTTACAAGAACCCAAATCTGTTACGTCCGGATTGGGGCAAATGGATAGGAGCAGTGGCT	69	-	chr3L	12186009	12186078	12186009..12186078	CG5632-RA,	FBgn0036263,	thoc6,	1	.
CG14881-RB	GCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGATGAGTATTATACGACAACCAACATC	69	+	chr3R	12260725	12260794	12260725..12260794	CG14881-RA,CG14881-RB,	FBgn0038425,	CG14881,	1	.
CG18604-RA	AACAGGAGCAAGTAAAGTACATTCCAGTAGCCGAAATTTCATACAAAGTAAACCAACGTTCGTTCTAGC	69	+	chr2R	14592701	14592770	14592701..14592770	CG42856-RB,CG18604-RA,	FBgn0262103,	CG42856,	1	.
CG15617-RA	CGGCCCTGGAGATGACCTTCAATGAGGCCCTGCAAATGTTCCGAAAGAATTCGCGATACGTTCGTGTC	68	-	chr2R	12633664	12633732	12633664..12633732	CG15617-RA,	FBgn0034151,	CG15617,	1	.
CG31422-RA	GATCCCAGCCAGAAGATCGATGGCAATTTGCAATTTGCTAGCTGCAACTGTGTCGCGTCGCGATC	65	.	.	.	.	.				0	no match
CG10459-RA	GCGAGGTGTGTGCCATTGGATCCCAAGATGGCAGTATCATTCTCTGGCAAATGAACCCCAAACAGGC	67	+	chr2R	5595916	5595983	5595916..5595983	CG10459-RA,	FBgn0033440,	CG10459,	1	.
CG11601-RA	ACAATGTCTGCCTCTCGTTTTGGGTCATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCG	65	-	chr2L	282673	282738	282673..282738	CG11601-RA,	FBgn0031244,	CG11601,	1	.
CG30045-RA	CCCAGGATCACAGGATACAGCTCGGTTCGACATGCAATACACAGTAAGATGGAAGAGATCAACTTGGGT	69	+	chr2R	8264171	8264240	8264171..8264240				0	no match
CG14502-RB	GTTACGAGTTTCCCTTTCTGGATCTCGCCATCTAATGAGTTGCACACACAAGTTGTTGGGATGCAGGGA	69	+	chr2R	14180887	14180956	14180887..14180956	CG14502-RB,	FBgn0034321,	CG14502,	1	.
CG30022-RA	CCAAGGCGGATCGTCACCTGAATGAAGGGGATCGCATAGATTTCGGCACCCATGTGATTGATGCTCT	67	-	chr2R	7275253	7275320	7275253..7275320	CG30022-RB,	FBgn0050022,	CG30022,	1	.
CG14667-RA	CGACCAGTACGTTTGTTATCAAGGCACGAAAGAGGAACACCAAGACCTAGAGGAAATCGAGCTGGATGA	69	+	chr3R	1201220	1201289	1201220..1201289	CG14667-RA,CG14667-RB,	FBgn0037317,	CG14667,	1	.
CG14658-RA	AGCCAGCCCAAAAACCAGTAAAACACACACTCAAAATGTCCAACATGCCAATCGAAGGGTAAACTCTGT	69	-	chr3R	655737	655806	655737..655806	CG14658-RA,	FBgn0037283,	CG14658,	1	.
CG5255-RA	GCACTCACCTAAGTCTATCCAAAACGGACAGCTCTGAGGATATCGAGGAGGAAATGATTGCTCTCCAGG	69	+	chr3R	12964439	12964508	12964439..12964508	CG5255-RA,	FBgn0038485,	CG5255,	1	.
CG4025-RA	ACGTGTCGCTGTCGCATCCCCAGATTGCCCTGATGTCCTATTCGACCACCATCTAGAGCTTACCTTC	67	+	chrX	1972050	1972117	1972050..1972117	CG4025-RA,	FBgn0025624,	CG4025,	1	.
CG3625-RA	CTTCTGGACACTGTACGCTATCGACAGGGAGCTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCC	65	-	chr2L	284751	284816	284751..284816	CG3625-RA,CG3625-RB,CG3625-RC,CG3625-RD,	FBgn0031245,	CG3625,	1	.
CG6556-RA	ACACGCATACCTGCAATCCCTTCGATTCGAAACCCACTTAGATGTAAATGTTTAATCTGCCTTATTTGC	69	-	chr2R	13301831	13301900	13301831..13301900	CG6556-RA,	FBgn0021818,	cnk,	1	.
CG14608-RA	TTCGGGCTTACTCTCTAATCAGACCAACGGAACCCAATCAGAAGCGGGATCGAAATACCAGCAGTACCC	69	+	chr3R	3065049	3065118	3065049..3065118	CG14608-RC,	FBgn0037487,	CG14608,	1	.
CG10772-RA	TGGCTCGATCCAACGAACTATACTCCCGAGTTTCCCTAGTTCCGGGTGACGAAAGTGACTCTGACGAGG	69	-	chr3R	21173440	21173509	21173440..21173509	CG10772-RA,	FBgn0004509,	Fur1,	1	.
CG13624-RA	GCCAGGAAGCTGCACAATATTGGCAAGGAACTGGACAAGCTAAGCCGCACCATCAATGACATGACTCCT	69	-	chr3R	20386427	20386496	20386427..20386496	CG13624-RB,CG13624-RD,CG13624-RA,CG13624-RC,CG13624-RE,CG13624-RF,	FBgn0039209,	CG13624,	1	.
CG7509-RA	GCCCAAAGGCTCACCGTGATTAATATGTGCGACAATCAGATTCAGAACTTTCCACCCAACCTCCTGCGA	69	-	chr3L	4804305	4804374	4804305..4804374	CG7509-RA,	FBgn0035575,	CG7509,	1	.
CG32315-RA	ACCCGGAATCTTTGACGGCTTGATCAGCATTAGTTTTGTGCAGGAGATGGCAAACAGTGCGGACAGCTT	69	-	chr3L	1789960	1790029	1789960..1790029	CG32315-RA,	FBgn0024510,	dlt,	1	.
CG14341-RA	TGCCAGCAACTTTCATCCCGACACTCCAGATACTCAAAGCGATGTCCACTATAACGTTACCCAACATCA	69	+	chr2L	1166953	1167022	1166953..1167022				0	no match
CG31826-RA	CCAGGACTATCCCGACTATCTGCAGAGTCTCGTCGAGATGGACGACCTGATCTTCGAGTCGCTGCTG	67	-	chr2L	15772080	15772147	15772080..15772147	CG31826-RA,	FBgn0051826,	CG31826,	1	.
CG14617-RA	GTGCAGCGCATTGTCCAAACCATCAGAGACACCCTGATCTTCGTGTTGAACCTGCACCTGGAAACTTGT	69	+	chrX	21887339	21887408	21887339..21887408	CG14617-RA,CG14617-RB,CG14617-RC,CG14617-RD,CG14617-RE,	FBgn0031191,	Cp110,	1	.
CG5711-RA	ACAGCTCCAAAATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTTCCCCGAACAACATGATCACGCTCT	69	+	chr2L	18078376	18078445	18078376..18078445	CG5711-RA,CG5711-RB,	FBgn0000120,	Arr1,	1	.
CG14955-RA	TTGCCACAATGCCAATGCTACAGGTACCTCCCCGTATCAGCAGAGACCAATGTGGATTATCTGGAGGGC	69	-	chr3L	3111343	3111412	3111343..3111412	CG14955-RD,	FBgn0035399,	CG14955,	1	.
CG3504-RA	TCCACGTGGGATCCATGACGACACTGAAGGTCCATCAGTTATTCCACACCACATACGAGAAAGCGGTCA	69	-	chr2R	18743674	18743743	18743674..18743743	CG3504-RA,CG3504-RB,	FBgn0001263,	inaD,	1	.
CG31053-RA	GACACCCTCTGTGACCACATCGGATAATACCCAGTCGGATGAGCACATGACAACCTTCTGCCTGGACT	68	-	chr3R	23753304	23753372	23753304..23753372	CG31053-RA,	FBgn0051053,	CG31053,	1	.
CG18428-RA	ACAAGGAAAAGCACAAGTCAAAGAAATCCAAGAAACACAACCGAAAAAAGGAAGAATCTCCGCCGATAG	69	+	chr3R	19935172	19935241	19935172..19935241	CG18428-RA,CG18428-RB,	FBgn0039149,	CG18428,	1	.
CG7586-RA	CCAGCCTTCGGACTTCATACCAAGGCAATCTTCCACGGCAGGAATCAGTCGCATATCTCCTATGTGGCT	69	-	chr2L	8075670	8075739	8075670..8075739	CG7586-RA,	FBgn0020240,	Mcr,	1	.
CG32133-RA	AAGCGCCCGATTCCTACATCATAGTAACCTGTCCCACGGACATGCATCTCTGTGCGGATCTCACG	65	-	chr3L	14014467	14014532	14014467..14014532	CG32133-RA,	FBgn0052133,	ptip,	1	.
CG14513-RA	CCGCCAGTACGGTTCTGGATCTGGCATCCCCTAGCCGGAAAATTGACCTTAACACCAGCAACAATTTCT	69	-	chr3R	24945190	24945259	24945190..24945259	CG14513-RA,	FBgn0005596,	yemalpha,	1	.
CG10847-RA	AGTCACCAATTCACCAGAAAACCAAACCAAACTATCCACACACCATGAAAACAACTTAAGAGCCGGGGA	69	+	chr3L	3839953	3840022	3839953..3840022	CG10847-RB,CG10847-RA,CG10847-RD,CG10847-RE,	FBgn0004875,	enc,	1	.
CG14821-RA	TGGCACTCGCGAAATTGCCCACTCATCTTGACTAATGCTCGAAACTCTTCTTTGGCATTATCCATTTGT	69	+	chr3L	6939287	6939356	6939287..6939356	CG14821-RA,	FBgn0035719,	tow,	1	.
CG14580-RA	GAGCAGCAGAAGAAAGTGGAGGATCAGAGGAGCACTGCAATATTCAGCAACCAACTGCCACCGAGTGG	68	+	chrX	21107560	21107628	21107560..21107628				0	no match
CG14940-RA	TCAAAGGGCAGTGGTAAAAGTGCTTAGCAGTAAGGTACCAAATTATCAGCTGAAATTGGGATCATAGCT	69	-	chr2L	11815294	11815363	11815294..11815363	CG42325-RC,CG42325-RE,CG42325-RD,CG42325-RF,CG42325-RG,CG42325-RH,CG42325-RI,	FBgn0259225,	Pde1c,	1	.
CG32276-RA	AGCCCAATCAATAGGCAATTAACAAACAATTCATTTGCGAATTTCAGTGAGATTGTGCTTCAACAACAA	69	-	chr3L	3198844	3198913	3198844..3198913	CG32276-RA,	FBgn0047135,	CG32276,	1	.
CG32491-RP	GCCGGAGTGGTCAACAGCAACTCTCCCTTCTTCATCGTCAGCAAGTACGGCACCAAGCAGATCATG	66	-	chr3R	17183792	17183858	17183792..17183858	CG32491-RP,	FBgn0002781,	mod(mdg4),	1	.
CG17896-RA	ATTCTGGAGAAGATTCAGATGAAATGTTCCACGTATTGAATTTCTGGATGCTTGCACACAGGACGTATT	69	-	chrX	385044	385113	385044..385113	CG17896-RB,CG17896-RA,	FBgn0023537,	CG17896,	1	.
CG15100-RA	GCGTTGATAAACCGAGAGCTGCGTGGTTACATCAACTCCATGGAGAAGGCTAAACTTCGGGATGGCGT	68	-	chr2R	14735626	14735694	14735626..14735694	CG15100-RA,	FBgn0034401,	CG15100,	1	.
CG3517-RA	GGGGATTCAAGGCCTTCTACTACGAGCCGAAAGTGGACTTGACCTACGATGAGCAAGGCAGACCCTC	67	-	chr3R	15250321	15250388	15250321..15250388	CG3517-RA,	FBgn0038706,	CG3517,	1	.
CG18315-RB	TCACCGATCCGAAGGCATGTGTGTACTTGCGCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTC	66	-	chr3L	1884477	1884543	1884477..1884543	CG18315-RA,	FBgn0000109,	Aprt,	1	.
CG3668-RA	GCGACTAGGCGGGATTCCCACTCGCTTGAACCAATTGGCTTGTGTACAGTCCATTGAACGGTGATTTCA	69	+	chr2R	18757707	18757776	18757707..18757776	CG3668-RA,	FBgn0004896,	fd59A,	1	.
CG31542-RA	AACGCTCACAACATGACATGACAGTACTCCCAAATTTCAGGTTAGCCAAATTTCCAGTTTCGACC	65	+	chr3R	1196041	1196106	1196041..1196106	CG34277-RC,CG31542-RA,CG31542-RB,	FBgn0085306,FBgn0051542,	CG34277,CG31542,	2	.
CG30076-RA	TGAGTCCTCGGTGATGATCTCCCACGGAATCCACAAAGATCATCGCATGAGACAGTTGGAAAAGGAGCA	69	-	chr2R	10432920	10432989	10432920..10432989	CG30076-RA,	FBgn0050076,	CG30076,	1	.
CG14993-RA	TGCAGGCCGAAACTTTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTGGTAAGAAGCCAGA	69	-	chr3L	4073209	4073278	4073209..4073278	CG14993-RA,	FBgn0016013,	Faa,	1	.
CG6985-RA	AGGCAGCAAGGATGTCGAGATTCAGGAGGAGATTAAAACCGTCGAGGAGTGCCTTATTCAGCGCCAGTT	69	+	chr3R	18567388	18567457	18567388..18567457	CG6985-RA,	FBgn0039017,	CG6985,	1	.
CG10840-RB	ATACGAATTGGACCCGTGGTGAAACGCGATGTGATGAAGGCCTCCACAATGTTGGAACACGAGGC	65	-	chr3L	3447650	3447715	3447650..3447715	CG10840-RB,	FBgn0026259,	eIF5B,	1	.
CG4742-RA	TGCCTGGATTTGCTGTGATAACTCAAGCAAGCTAAGATGCACAAGGTGATCCGGCAAATGTCCCAGCTG	69	+	chrX	16678071	16678140	16678071..16678140	CG4742-RA,	FBgn0030786,	mRpL22,	1	.
CG10920-RA	TGCCAATGAGCGAACTCCAGCATCAGTATAACACCGCGGTAATTCAGATGATGGCAAGCCTAGTGGCCT	69	-	chrX	7747175	7747244	7747175..7747244	CG10920-RA,	FBgn0029963,	CG10920,	1	.
CG1081-RA	TTGGAAATACGGCAAATCGCTATGGCAATACGAAAATCGATTATCTCTTATCTACACAGTTGGGTCAGC	69	+	chr3R	1395872	1395941	1395872..1395941	CG1081-RA,CG1081-RB,	FBgn0041191,	Rheb,	1	.
CG7496-RA	GGCTACCACTATCTGATCGGCGGTAATGGCAAGGTATACGAAGGCAGAAGTCCAAGCCAGAGAGGAGC	68	+	chr3L	7644553	7644621	7644553..7644621	CG7496-RA,	FBgn0035806,	PGRP-SD,	1	.
CG14713-RA	CCAGTACGCGGAATAGTACGATCGTGGACACAAGTACATCGGCGACAAGTGTAGCAACACCCACGCAAA	69	+	chr3R	7495469	7495538	7495469..7495538	CG42327-RE,	FBgn0259227,	CG42327,	1	.
CG14981-RA	CCGGTGATAAGATACTTCCGTGTTCCTTCAAAGGGTTGCTTTAGAGCACAAACCCGCGATTTTCGACCG	69	-	chr3L	3909380	3909449	3909380..3909449	CG14981-RA,	FBgn0035473,	mge,	1	.
CG11697-RA	TGCGATCCTTTAGCTGTAACGAATCCTTCGACCAGGTCCTGGGACGTATCACCTTGGAATGGGGC	65	+	chrX	11467114	11467179	11467114..11467179	CG11697-RA,	FBgn0030313,	CG11697,	1	.
CG13544-RA	CGATGTCATCGCCAGTATGAGACGCTGGAAAATTCTGGTGGACAACGATTTGACTGTGGACAAGAACAT	69	-	chr2R	19026782	19026851	19026782..19026851	CG13544-RA,	FBgn0034826,	CG13544,	1	.
CG3061-RA	CGAAAAGCGCAAGAACTACGATCTGTATGGCATCAATGAGTCGCACAATGGTCACGGCAACAATGGT	67	+	chr3R	9859398	9859465	9859398..9859465	CG3061-RA,	FBgn0038195,	CG3061,	1	.
CG4185-RA	GCCAACGAGAGTCGCGAGCTGATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCC	69	+	chr2L	15008031	15008100	15008031..15008100	CG4185-RA,	FBgn0028926,	NC2beta,	1	.
CG31794-RD	AGTTGGATTCTATGCTAGGCAATCTACAGGCCAATATGAGTCGCCAAGGAGTCAATACCGTGCAGA	66	-	chr2L	19404444	19404510	19404444..19404510	CG31794-RA,CG31794-RB,CG31794-RC,CG31794-RF,CG31794-RD,CG31794-RG,CG31794-RH,CG31794-RI,	FBgn0041789,	Pax,	1	.
CG7554-RA	AGAAACCGGAGACTAAGAACGATCCACGAGATACAGATACCGATATCGCAGCAGTGAAAGTGTGCCGCA	69	-	chr3L	15692833	15692902	15692833..15692902	CG7554-RA,	FBgn0041160,	comm2,	1	.
CG17610-RA	CACACCAATCACTGATTCCGAGACAGTGACAACACCCGAAACTGTTACCCACACCGGAGAACCGC	65	-	chr2L	8432101	8432166	8432101..8432166	CG17610-RA,	FBgn0001137,	grk,	1	.
CG3162-RA	TCTTCAGGTACCGGGCATATCCACACTACAAGATCCTGGCTCACCTACCGAAACTCTCTGCCTGCT	66	-	chr2R	19097957	19098023	19097957..19098023	CG3162-RA,	FBgn0034834,	LS2,	1	.
CG17322-RB	CTGTGCCGATTGTGGGTGTCCCAATTTACGGCGACCAATCCCTCAATATTGCCGCATTGGTGCAG	65	+	chr2L	18828436	18828501	18828436..18828501	CG17322-RC,CG17322-RD,CG17322-RA,CG17322-RB,	FBgn0027070,	CG17322,	1	.
CG10998-RA	CATGCTCAACAAGGACTACATCACGTTGCGCAAGATGTCCCAACTGGTGACCACCAAACGGCTGC	65	-	chrX	20894774	20894839	20894774..20894839	CG10998-RA,	FBgn0031142,	r-cup,	1	.
CG31704-RA	CGTGACCTATAGTAACCAGTGTGTTTTGGATTGTTTAATTAAAGAAGGACGCTCCATTACCGTGG	65	+	chr2L	11840833	11840898	11840833..11840898	CG31704-RA,	FBgn0051704,	CG31704,	1	.
CG14562-RA	ACGGAGAGTTTGAGGTGCGCTTCCTTAGCTGGCATAACGAGTTGCTTACCCTCAGCCTTAAGATACAGA	69	+	chr3L	21941558	21941627	21941558..21941627	CG14562-RA,	FBgn0037142,	CG14562,	1	.
CG6511-RA	CGCCTCCAAAGAAGTGCTGGAATTGCTTCAGAAATCGTTGCGACTTTGTGATGTCGAACACCCTGGTGC	69	+	chr3L	8717789	8717858	8717789..8717858	CG6511-RA,	FBgn0035923,	CG6511,	1	.
CG16972-RA	GCGTTAACACCGGTGATCATCTGATCATCAAGTCAGCATCGAACGACGAAGCCTGGATAAGTGCCGCC	68	-	chr2L	13197720	13197788	13197720..13197788	CG16972-RA,	FBgn0032481,	CG16972,	1	.
CG17362-RA	ATGCAAACTGCAGATTTATGGCACGAACTTTGCGAATCTGGGTTGGTCCTCTTTCGGTCTGCCGC	65	+	chr3L	13979187	13979252	13979187..13979252				0	no match
CG4853-RB	CCTTGGGTTCGAATTGCATCAGCCAGGTGACAATCGACAGTTACGTGCAGTGGTTCAACCAGCTAAGCT	69	+	chr2R	13403732	13403801	13403732..13403801	CG4853-RA,CG4853-RB,	FBgn0034230,	CG4853,	1	.
CG1349-RA	GCACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCTCCCGGAGCGGAGGAGA	68	+	chr3R	26632897	26632965	26632897..26632965	CG1349-RA,	FBgn0039802,	dj-1beta,	1	.
CG32331-RA	GCCATGCCAAGGTGCTTCGAGGAAAGTGCAAACAGCAGATGTAATGGATATGGAAAGGCAAATCGAAAA	69	+	chr3L	1481250	1481319	1481250..1481319				0	no match
CG4963-RA	AGGAACAGCAGATACAGCAGAAAACAGCTCCCAGAGAACTACGTCTCCCCCAGACCTACAATGCCCC	67	-	chr3R	23768922	23768989	23768922..23768989	CG4963-RA,	FBgn0039561,	mfrn,	1	.
CG6495-RA	AGGAAACGTACACGGAGGCACCAAAAAAGAAGCAGCACAAACACAAGAAGGTCAAGACGAAGACGGCCA	69	+	chr2L	10764357	10764482	10764357..10764386,10764442..10764482	CG6495-RA,	FBgn0027550,	CG6495,	1	.
CG5360-RA	CTCCGAAACGCAATCGAGTATAGTGGATCGCATCTCGGAGGATCTCTTCTGCAAGGAACGCCAACCCAT	69	+	chr2R	19414839	19414908	19414839..19414908	CG5360-RA,	FBgn0261786,	mi,	1	.
CG11423-RA	CACTCCTTGCCGCGAGGGTCTCCACTGGGTGAACATGATCATGCATAGATTTGTGACAGGACAGG	65	+	chr2R	13484602	13484667	13484602..13484667	CG11423-RA,	FBgn0034251,	CG11423,	1	.
CG7951-RA	CGGGACTATCATAACAACCCGCTGATCAGTGGCACCAACTTCCAGCTGTCTCCAGTCTTCGGAGG	65	+	chr3R	25945964	25946029	25945964..25946029	CG7951-RA,CG7951-RB,	FBgn0015542,	sima,	1	.
CG17935-RA	TCATCTTTCCCTTAACCCAAGAACATCAAAATTTGAGCTCTTTTCCAAGCTTTTTAGGTTCAGCACTTT	69	-	chr3R	3189412	3189481	3189412..3189481	CG17935-RA,	FBgn0004175,	Mst84Dd,	1	.
CG3167-RA	AGCAGCTGGAGAAAAACGATAGCCGTGTGCTGTTCGGAATGGTGAATCGTGACGGGAAGGCAATG	65	+	chr2R	19923667	19923732	19923667..19923732	CG3167-RA,CG3167-RB,	FBgn0034962,	MAN1,	1	.
CG10910-RB	CCACTGCCAGTTGGAACACTACCACCGAGGGAAATTGGTTCGATCACCTGCTGAACGAGATTGGAAACC	69	+	chr2R	13909739	13909808	13909739..13909808	CG10910-RB,	FBgn0034289,	CG10910,	1	.
CG10809-RA	GCCAAAAACAAAAAGAAATCAAGTTATGTAATAATGATGCAATCGCAACTCAAGAGGACACCTAACAAT	69	-	chr3L	9850817	9850886	9850817..9850886	CG10809-RA,CG10809-RB,	FBgn0036052,	CG10809,	1	.
CG7079-RA	TGCACTGCTGAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATGTGCTGTCCG	68	-	chr3R	16874194	16874262	16874194..16874262	CG7079-RA,	FBgn0038849,	CG7079,	1	.
CG18358-RA	CCGGAACGCAACCATTTCACATCGCTATCCATGTATATTATCTATTCTTATGGTATTTGTAGTAATCCA	69	-	chrX	16608847	16608916	16608847..16608916	CG34325-RA,	FBgn0085354,	CG34325,	1	.
CG6993-RA	AGGGAATCGGGTATGGGTACTGCAACCTTAATCAGCACAAAGTTACGAAGCCAATCCCCGTTGATCCCA	69	-	chr3R	12200904	12200973	12200904..12200973	CG6993-RA,CG6993-RC,CG6993-RD,	FBgn0003513,	ss,	1	.
CG11266-RC	ACTGTCCAATATGTTTGATCCGCGTACCGAGACAAATCCTACCTGGGACGTTGAGATCCGCGACGA	66	+	chr2L	7037125	7037191	7037125..7037191	CG11266-RF,CG11266-RG,CG11266-RD,CG11266-RA,CG11266-RE,CG11266-RC,CG11266-RB,	FBgn0031883,	CG11266,	1	.
CG32373-RB	CCCTCGCATTGAGTTGTCCAGTTTTGACACCCCCTCGCAATGGACGTTTCTATCCTGCAAGCTGCAATA	69	+	chr3L	7751822	7751891	7751822..7751891	CG32373-RA,CG32373-RB,	FBgn0052373,	CG32373,	1	.
CG17946-RA	TTTCGGTTCCTTTCGATTCCGGTTGGGAAATATCTTTTAAGAAACAAAATCATGTACATGTACGTCA	67	+	chr3R	3191603	3191670	3191603..3191670	CG17946-RA,	FBgn0004172,	Mst84Da,	1	.
CG33257-RA	GTAGAGCCTCCCGAGCCAGAGAAGCCACAACATAGCACCAAAAGCTACTACACCACATCGGGAGG	65	+	chr3L	16339889	16339954	16339889..16339954	CG33257-RA,	FBgn0053257,	CG33257,	1	.
CG5756-RA	GCGGACGACGATCCACACCAATCAGCAACCCTATCTTACGCCCAATATCTTTGTGCCCTACCATCAGCA	69	-	chr2R	13989113	13989182	13989113..13989182	CG5756-RA,CG5756-RB,	FBgn0034301,	CG5756,	1	.
CG4319-RA	AGCCATCGCAATGAGGATTCGAGTAACTAACAAATACGGGGAAAACCAATAGTCCAGTCCAAAATCCAG	69	-	chr3L	18391082	18391151	18391082..18391151	CG4319-RA,	FBgn0011706,	rpr,	1	.
CG31624-RA	GCTCGCCAGTCAAACGTTCTATGAGCGCGACGGCAAGCCCTATTGCAAACAGGATTACGAGAACCTC	67	-	chr2L	21199574	21199641	21199574..21199641	CG31624-RA,CG31624-RB,	FBgn0051624,	CG31624,	1	.
CG17328-RA	CGACAAGCCTTTTCAGTGTGAGATCTGCTCAAAGCAGTTTTCCGCGTTAGGCAATTTCCAGGCGCACC	68	+	chr2L	16300962	16301030	16300962..16301030	CG17328-RA,	FBgn0028895,	CG17328,	1	.
CG4766-RA	CGGTTCGCAAGTCCGGATGGAAAAATCGAAAAATCGAGAGAATGAAAAAAGAGCATTTGTCCAGGCGGC	69	-	chrX	5891871	5891940	5891871..5891940	CG4766-RA,	FBgn0027546,	CG4766,	1	.
CG30129-RA	CCCTCTGAGTCGGTGAAGTGCTATCACAGCTGCGTCTACAAGAAACTGGGTCTCCTGGGTGACGATG	67	-	chr2R	15586516	15586583	15586516..15586583	CG30129-RA,	FBgn0046880,	Obp56b,	1	.
CG7065-RA	GAGAACATCATAGCCAATCTAATGGGCACTTTAAGCAAGAATGGCACTTCTGGAGGTTCACCCGTGGGT	69	+	chrX	9041104	9041173	9041104..9041173	CG7065-RA,	FBgn0030091,	CG7065,	1	.
CG31279-RA	ATCGGTGCCATAGGTGATCCCAGTCCACAAAATGTCTCATCGGGATCGGAACCCCTCATCACGTG	65	+	chr3R	12258139	12258204	12258139..12258204	CG31279-RB,CG31279-RC,	FBgn0051279,	CG31279,	1	.
CG3312-RA	CAGCCCGTCCTCGAGAATGGCCTTATGGTGCAGGAGTTTTTTCGCCGCTATGAACGTTGCTATGG	65	-	chrX	5214362	5214427	5214362..5214427	CG3312-RB,CG3312-RA,CG3312-RD,CG3312-RE,	FBgn0014024,	Rnp4F,	1	.
CG12904-RA	CGCGAATCTCGTGCGAAGTCGGATGGAGTCTCTGAATCTACCCACGATCGACTACGACGATGTGAGCG	68	-	chr2R	6213266	6213334	6213266..6213334	CG42732-RF,CG42732-RE,CG42732-RD,CG42732-RG,CG42732-RH,	FBgn0261698,	CG42732,	1	.
CG33159-RA	TAATGCGTATGCCAGGATCAGTGGTTGGGGAGTTACCCGCGAGAATAACCGTGAACCTGCCGAAC	65	-	chr3L	3203961	3204026	3203961..3204026	CG33159-RA,	FBgn0053159,	CG33159,	1	.
CG6956-RA	GGATACGCTAACCGAGAGCTGTTCTATGTATAATGGTTTCTAGTTGATTATTAAATAAACGCGGCAAAA	69	+	chr3L	6138418	6138487	6138418..6138487	CG6956-RA,	FBgn0020642,	Lcp65Ac,	1	.
CG3565-RA	TGTGCGCCAATGTAATGTCTTGGTTTGACGATTCGCCCAATCCCAGGATTATGATAAAACCAGACGGCG	69	+	chr2R	20490814	20490883	20490814..20490883	CG3565-RA,	FBgn0035034,	CG3565,	1	.
CG18506-RA	ACCCCCGCGCCATTCAGGGCACTTTGCTACTCTAACTCTACTTTCATAACTTAACAACAGACAATCAGA	69	+	chr2R	20807391	20807460	20807391..20807460	CG34405-RG,CG34405-RH,CG34405-RI,CG34405-RJ,CG34405-RK,CG34405-RL,	FBgn0085434,	NaCP60E,	1	.
CG10934-RA	ACGCCCTACCAAATCGCCGGACGTACAGATACTATGAGACAGATGAGAACTTAGGCGATGGTCCGCG	67	+	chr2R	13610370	13610437	13610370..13610437	CG10934-RA,	FBgn0034263,	CG10934,	1	.
CG11538-RA	TGTTGTCCATCTGCTTGACATGATGGAAGCCGTGCATTTTGTAGTGCTCAGCCCATTCCAGTGCCTG	67	-	chr3L	12123028	12123095	12123028..12123095	,CG6806-RA	,FBgn0002565	,Lsp2	1	.
CG7638-RA	GCATTGTCTACCAATCATATTTCAACAAGACCTAGGTTCATTTAAATCCCCGTCGTAGTATATGACTTT	69	+	chr3L	11104929	11104998	11104929..11104998	CG7638-RA,	FBgn0036133,	CG7638,	1	.
CG14966-RA	TCTTTGGACAAGGGATCTCGATCGCGAAACAAGATAATAATGATAACCAAGGGAGTGTCCACGGTGGA	68	-	chr3L	3197137	3197205	3197137..3197205	CG14966-RA,	FBgn0035415,	CG14966,	1	.
CG5619-RA	AGTACTGCGCCGTAAAACTGGCTCATGCATTCGAATAAACGATAAATTGATTTTGATCACCGCAGAGAA	69	-	chr2L	10271583	10271652	10271583..10271652	CG5619-RA,	FBgn0003751,	trk,	1	.
CG15081-RA	TTGCCAGCTCACAGAACAAGGTCTATTTGTCGGCGGATAGCTTGATGCTTAACATCCAGGACTCTGGCT	69	+	chr2R	14708689	14708758	14708689..14708758	CG15081-RC,CG15081-RB,CG15081-RA,CG15081-RD,CG15081-RE,CG15081-RF,	FBgn0010551,	l(2)03709,l(2)03709,l(2)03709,l(2)03709,l(2)03709,l(2)03709,	1	.
CG30035-RA	GTTGCGTGAATTTATCGGTGTAAAAAAAATGACATGAATCGTAGTTAGTTGTAGTGCAAAAGCAAGCGC	69	+	chr2R	7562093	7562162	7562093..7562162	CG30035-RA,CG30035-RB,	FBgn0050035,	Tret1-1,	1	.
CG7628-RA	GGATGATGGCAGTGTCGATTGGCATCTATTCCGGAATATTGCCTATGCATGGATCGTAACGGTGCCGGT	69	+	chr3L	11126958	11127027	11126958..11127027	CG7628-RA,	FBgn0260795,	CG42575,	1	.
CG5973-RA	ATTCCGCGGCATTCAATTGACCGTACTGGGTTCTATGGTGGAGCCCTACTCACAAATTTGCGGCTCAG	68	+	chr2L	7444309	7444377	7444309..7444377	CG5973-RA,CG5973-RB,CG5973-RC,CG5973-RD,	FBgn0031914,	CG5973,	1	.
CR32861-RA	CGGATTTCGGTAAATTATTTTCTACCCAACTTTACCGTAACCAAACAAAAGGCGTTCAGTTGCAG	65	+	chr3R	1216892	1216957	1216892..1216957				0	no match
CR32162-RA	ATGAGTAAGGAAAACCAATCAGCCTTGCTAATCGCTTGGCAGTATTGGCTTCTAGGCAGGGGGGC	65	+	chr3L	16646881	16646946	16646881..16646946	CR32162-RA,	FBgn0041721,	snRNA:U12:73B,	1	.
CG10953-RA	TACCGTCACCGTTTCTAAACTTACCAAAGCCCAACGAAAAACTGTTTCCTAACGAATCCCTACGG	65	-	chr2R	13053005	13053070	13053005..13053070	CG10953-RA,	FBgn0034204,	CG10953,	1	.
CG17564-RB	CCAAACTGGAACGATCCTACAACGAGTCCAGAGTGCAGTGCCTCAGATGGGAGAAGATCCTGGCC	65	-	chr2L	19298735	19298800	19298735..19298800	CG17564-RB,	FBgn0032768,	CG17564,	1	.
CG33191-RA	CGTGCCGTTTCGATCCCAGTCCTATTATGGACGAGGAAGGCAATGTGTTTTGTCCCGGCAACTGTG	66	-	chr3R	4604423	4604489	4604423..4604489	CG33191-RA,	FBgn0053191,	CG33191,	1	.
CG4170-RD	TCGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCGAAACCAATGTGACCAATGCCGAGGGC	69	-	chr2L	15065337	15065406	15065337..15065406	CG4170-RD,CG4170-RC,CG4170-RA,CG4170-RB,	FBgn0024183,	vig,	1	.
CG10855-RA	GCCCTCGCTATTGGGCCTCCCGGACGAATTGTACTTCGAGATCTTCAGATATCTGGACAAAAGCCAGCT	69	-	chr3L	3804043	3804112	3804043..3804112	CG10855-RA,	FBgn0035461,	ntc,	1	.
CG6403-RA	CGTTGCGTAACTGCGTCGACGACTGATGATGTGATGTGTGGCGTTTTAATTATAGTTCATCCATCGCCA	69	-	chr3R	22561323	22561392	22561323..22561392	CG6403-RA,	FBgn0039453,	CG6403,	1	.
CG2964-RA	ACGCGGACACCATATACACCATGATAATGCGCGGAGTGAACATATTCCGTCTGAACTTCTCCCACGAAT	69	+	chr2L	2812673	2812742	2812673..2812742	CG2964-RA,	FBgn0031462,	CG2964,	1	.
CG13598-RA	CGCCAGGCCATATATATAGAGTTATCCATACATATGTGACGATACGAGTATAGAGTTTAGTGTTAGGTG	69	-	chr3R	19720569	19720638	19720569..19720638	CG13598-RC,CG13598-RD,CG13598-RE,CG13598-RF,CG13598-RG,	FBgn0016754,	sba,	1	.
CG4814-RA	ACCATCCACCGGCATGTGATATCAAGGATACCGAGATATAGCATCACATACACGGACAACACGTGGCTG	69	+	chr3L	5426157	5426226	5426157..5426226	CG34391-RC,	FBgn0085420,	CG34391,	1	.
CG6449-RA	CGGCGGCAATGTGAATGTAAACGTTCCCAATGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAA	69	-	chr3L	10688334	10688403	10688334..10688403	CG6449-RC,CG6449-RA,CG6449-RB,	FBgn0036101,	NijA,	1	.
CG18013-RA	GCGCACTTCGATCGACGCCTTTATCAAGGGAGAGGGCACATATGCAAAGCTAGACAACCTCACGCTTCT	69	-	chr2L	4386498	4386567	4386498..4386567	CG18013-RA,	FBgn0261976,	Psf2,	1	.
CG2525-RA	TTCCGTGCATTTCGGTAATAGCCTCGGTGCTTACGTCGTCTTCAACAGAAGCCCGTGAAGTGGTGC	66	-	chr3R	634578	634644	634578..634644	CG2525-RA,	FBgn0026417,	Hus1-like,	1	.
CG32237-RA	GCCGTGCCCTGTAAGTCTGGATGACTGCGAATACACTTGTACCTGAACTTCTCGTTCGCGACTTGATTC	69	-	chr3L	4849534	4849603	4849534..4849603	CG32237-RA,	FBgn0052237,	CG32237,	1	.
CG32983-RA	GTTTCTTCCCAATGGCCTCGTCACCGGAGTGATTGTGACCATTTTCCTGGTAGCTCTCCTTCCGC	65	+	chr2L	8866316	8866381	8866316..8866381	CG32983-RA,	FBgn0052983,	CG32983,	1	.
CG14903-RA	GCTCTGGTCAAGCTCAGTGAAAAGTTAAAGGAGAACGAGATTAAACACAAGTTGTGGATCGAACAGCCC	69	-	chr3R	12399038	12399107	12399038..12399107	CG14903-RA,CG14903-RB,	FBgn0038446,	CG14903,	1	.
CG2939-RA	GCCTCTTCACAAACCCGTCACCGTAGTCTCCCGCAATAGCTGAAGATTCTGGCGAGAAGAATCGGAGG	68	+	chr2L	3838510	3838578	3838510..3838578	CG2939-RA,	FBgn0004567,	slp2,	1	.
CG3496-RA	CCCGCTTCTCACTGACACTTCCCGTAAACTCGGCAAACGAACCAGAACTAGATCCTAAGATGCCCGCTG	69	-	chr2R	19247828	19247897	19247828..19247897	CG3496-RA,	FBgn0003977,	vir,	1	.
CG3730-RA	AAAGTGTGGTACGAATGGCAGGTGGTCAATTCTCCAGACGATTGGGAGCACCATAACACACGCGG	65	+	chr2R	12154289	12154354	12154289..12154354	CG3730-RA,CG3730-RB,	FBgn0015925,	csul,	1	.
CG7035-RA	AGCGCATGGAGGAGAAATTGGAAGCAGCGAATGTGAACCAGAAGCGTCTGTTCCTCATCGTCTTCCAGA	69	+	chrX	4551375	4551444	4551375..4551444	CG7035-RA,CG7035-RB,	FBgn0022942,	Cbp80,	1	.
CG2678-RA	TGCCCACGCACTTATATGCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAGCAAGCCAGC	68	+	chr3R	3740634	3740702	3740634..3740702	CG2678-RA,CG2678-RB,	FBgn0014931,	CG2678,	1	.
CG11121-RA	CCGATTGCTGGAAGGCTGTCATGAGTGGATATTCAGCTTCCAAATGCTTGGCAAGGGGATTCTGG	65	+	chr2R	3321862	3321927	3321862..3321927	CG11121-RA,	FBgn0003460,	so,	1	.
CG31092-RA	TACCACAAGACCACAGAGGACCACTTCAGTCTGGAGAAGAATGGGACGCCACACATTTACGCCGC	65	-	chr3R	21527046	21527111	21527046..21527111	CG31092-RA,CG31092-RB,CG31092-RC,CG31092-RD,CG31092-RE,CG31092-RF,CG31092-RG,	FBgn0051092,	LpR2,	1	.
CG7208-RA	CCTGCCCTTGGTCAGTCCGAATAAGTCGCTCTGTGTGATCTTCGCATTACTGGAGTCACAGAACCCGG	68	-	chr3R	14009698	14009766	14009698..14009766	CG7208-RB,CG7208-RA,	FBgn0038575,	CG7208,	1	.
CG13916-RA	GCGATCTGTTTGTGTTGCATGGAAACCTCTGTGGCAGTTCGAATCCCTCGATACGTTCAGTGGCGCAC	68	-	chr3L	1435190	1435258	1435190..1435258	CG13916-RC,CG13916-RD,	FBgn0043865,	SA-2,	1	.
CG13626-RA	GCGTACGCGCAAACGAAGCAAAGCCAACAGATCGGATCTGAACAACTCATCCTCCAAGATGGCTCTGG	68	-	chr3R	20450381	20450449	20450381..20450449	CG13626-RA,	FBgn0039212,	Syx18,	1	.
CG4289-RA	CGCCACACGACACTTATCCAGAAGCAGCAGTTCCTACGGTCCAAAGGTCTCACCGCTCACGAAATTC	67	+	chr3L	20772241	20772308	20772241..20772308	CG4289-RA,	FBgn0037020,	CG4289,	1	.
CG4328-RA	AGAGGACCCAAGCGACCGAGAACCATTCTAAACACGCAGCAAAGACGAGCTTTTAAGGCCTCCTTCGAA	69	-	chr3L	12284813	12284882	12284813..12284882	CG4328-RB,	FBgn0036274,	CG4328,	1	.
CG17802-RA	GGAGCAGGAGGTGTTGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGACCTGTA	69	-	chr3R	13630443	13630512	13630443..13630512	CG17802-RA,	FBgn0038549,	CG17802,	1	.
CG11286-RA	TGAGTTCCATCGTCTCCAGGAGCTCGACGAGTGGTATGAGCCAAGGATCAAGTTCCACGACGAGG	65	-	chr3R	3597160	3597225	3597160..3597225	CG11286-RA,CG11286-RB,	FBgn0037516,	CG11286,	1	.
CG32830-RA	GGCCAGGACAATAGCTCTAAGCAGGTCACGAGATTTTCCGGAACTCTTTCAAAACACCATTGCCGC	66	+	chr2L	11256117	11256183	11256117..11256183	CG32830-RA,	FBgn0052830,	CG32830,	1	.
CG17776-RA	TATGCCTGCATTGGAGTCACCCTGTACGGCACCTACATCCTGGGAATGCGCTACTACCACTACTG	65	+	chrX	2079057	2079122	2079057..2079122	CG17776-RA,	FBgn0040899,	CG17776,	1	.
CG31247-RA	GAAGTTACGAGTACGTCTGATGATGTCCTACTAATTGGTGACCAAGAACAAACTGATGGCAAGCG	65	+	chr3R	13693007	13693072	13693007..13693072	CG31247-RA,CG31247-RE,	FBgn0261649,	tinc,	1	.
CG14328-RA	TGGAGGCTATGGGCAGCAATACAACCAGTTTAGCAACTACAACAACTACGGATCTTCTGGCTACTACGG	69	+	chr3R	13438922	13438991	13438922..13438991	CG34281-RA,	FBgn0085310,	CG34281,	1	.
CG17949-RA	TCAGTGAGGGAACCAAGGCTGTCACCAAGTACACCAGCTCTAAATAATTTTCTCCTGCGAATGCGGACA	69	.	.	.	.	.	CG33910-RA,CG17949-RA,	FBgn0053910,FBgn0061209,	His2B:CG33910,His2B:CG17949,	2	.
CG3650-RA	TATCCCGGCGTCTACACCAGCGTCCATCGGGTCCGGAGCTTCATCCTCCGCTCCATTAAGAAGTG	65	+	chr2R	20737218	20737283	20737218..20737283	CG3650-RA,	FBgn0035070,	CG3650,	1	.
CG5376-RA	GCTCACGGAGAAGAAACTAGCCATCTCCAAAGGAGTGTATGACAAGCTGCGTTCGGAGTACGACACCCA	69	-	chr3R	18313948	18314017	18313948..18314017	CG5376-RA,	FBgn0038977,	CG5376,	1	.
CG17945-RA	GAATCGATTTGTGAAACCATACCACAATCCCACCATGGTTAAACTAACACCTGAAAGTTAAAAGC	65	-	chr3R	3189999	3190064	3189999..3190064	CG17945-RA,CG17945-RB,	FBgn0004174,	Mst84Dc,	1	.
CG18371-RA	CCCACCAAGGAGATCACTTCGCACAACTTTAGCCGATTCTCGATTCGCTACCACAATGTGGCAGCAACG	69	+	chr2R	9916487	9916556	9916487..9916556	CG18371-RA,	FBgn0033893,	CG18371,	1	.
CG1345-RA	GGCTGAAGCCACATATGTTTAACCCCTACATTTGTAGCTGTACTGACCCTTTGTGTTGTGGACCCACTA	69	-	chr3R	24162788	24162857	24162788..24162857	CG1345-RA,	FBgn0039580,	Gfat2,	1	.
CG5721-RA	GCCCTGATCACCCTGTTGGAGGAGACGCTCTCTGCTGAGTCACCCAACGAATCCGTGTTAAAAAAGTCC	69	-	chr2R	14071041	14071110	14071041..14071110	CG5721-RA,	FBgn0034315,	CG5721,	1	.
CG31381-RA	GAACGCTTCGGAGGAGAAATAATCAGCGCTGACTCCATGCAGGTTTACACCCACCTGGACATCGC	65	+	chr3R	20703151	20703216	20703151..20703216	CG11089-RD,CG11089-RE,CG31381-RA,CG31381-RB,CG31381-RC,CG31381-RD,	FBgn0039241,FBgn0043799,	CG11089,CG31381,	2	.
CG9817-RA	CATGGCCAGGAGCTTTGGAGCCTACCATCAGGTGGCGTCGAGTAATTACCATCCGGGCGTTAGGC	65	-	chrX	10498270	10498335	10498270..10498335	CG43347-RB,CG43347-RC,	FBgn0263072,	CG43347,	1	.
CG40032-RA	GGTTCTTTGTCTTAGTGATTCGTTCCATGCGCGTTCTTGGTCACTAACTCTCTACTCCTCCGCCTTC	67	+	chr2RHet	1851710	1851777	1851710..1851777				0	no match
CG6949-RA	ATGAATTCTTTGCCTCTTTGAACCGAAAATGGGAAAGGATGAAATTTGAAACTTATGGGGTTGTATTTT	69	+	chr3R	18445566	18445635	18445566..18445635				0	no match
CG18536-RA	CTTTTGAGTTGGTTACAACCTCAACTAGAATCGGAATAGTGTGTATATTATTTCATTTGACAGCAGCAT	69	+	chr2R	14182422	14182491	14182422..14182491	CG18536-RA,	FBgn0034322,	CG18536,	1	.
CG4220-RB	GCAAACCAGAAGCCCAAATGCAGATACCAGAGGAGCAGAGTAAACCAGCAGCTACTTGTCTGCCAAGCT	69	-	chr2L	14387156	14387225	14387156..14387225				0	no match
CG32389-RA	TATCGAGCACGTTCAAATCGCAAGACTCCATACAGTGCCACATACCCACATTGGTCAAGTCGCCATCGA	69	-	chr3L	7155937	7156006	7155937..7156006	CG42256-RH,CG42256-RJ,	FBgn0263218,	Dscam2,	1	.
CG3339-RA	TGGTGACCTGACCATCTCGTCCAATGTCCTGCACAACTATCTGGAGGGTAGCAATCGGATTCCGT	65	-	chr3R	23121654	23121719	23121654..23121719	CG3339-RC,CG3339-RD,	FBgn0039510,	CG3339,	1	.
CG5325-RB	CCGCCTCGGAGAACGACATAGCCAGCATGTTTGGTTCACTGAATCTTGAAGGGGTATGCATCCTGAAAA	69	+	chr2L	12094428	12094497	12094428..12094497	CG5325-RB,	FBgn0032407,	CG5325,	1	.
CG17871-RB	GTGGAGCACGTGGGATCTTTTCGAGCTGAGGAGCAAACAGGAAGTGGATATGTGGCGATTCGAGCATCG	69	-	chr3L	15071182	15071251	15071182..15071251	CG17871-RB,CG17871-RC,	FBgn0036474,	Or71a,	1	.
CG8095-RB	AGCTTCCCGTAAATCGCACCATTGTGTTCAACTGCCGGGATCCCGAAATGACCATATGTGTCCGA	65	+	chr2R	11144686	11144751	11144686..11144751	CG8095-RB,CG8095-RA,	FBgn0003328,	scb,	1	.
CG4774-RB	CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATATGTTATAGTCCAGGGCGAT	69	-	chr3R	21512084	21512153	21512084..21512153	CG4774-RB,CG4774-RA,CG4774-RC,	FBgn0039360,	CLS,	1	.
CG10476-RA	TGAAGGAGGACGACTATCCAAGAGTGAAAACCTTCATGACGGACTACTTTCACTACGACGAGCCCA	66	.	.	.	.	.	CG18606-RB,CG10476-RA,	FBgn0034428,FBgn0034426,	CG18606,CG10476,	2	.
CG12163-RA	ACCCATACAAGGCCAAAAAGAATCAGTGCCACTTCAACAGGACTTTGTCCCACGTTCAGGTTGCCGG	67	-	chr3R	1064008	1064075	1064008..1064075	CG12163-RB,CG12163-RA,	FBgn0260462,	CG12163,	1	.
CG7494-RA	TGCCATCGGGAGACGCATCATCCCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAA	69	+	chr3R	4127599	4127668	4127599..4127668	CG7494-RA,	FBgn0037566,	mRpL1,	1	.
CG5770-RA	GCCGCCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTGGCCTTTGAGTAGTTAGCATTCGA	69	-	chr2R	13931776	13931845	13931776..13931845	CG5770-RA,	FBgn0034291,	CG5770,	1	.
CG6692-RA	GCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCAAGCACAACCAGCGATTCGCCG	68	+	chr2R	9854297	9854365	9854297..9854365	CG6692-RB,CG6692-RA,CG6692-RC,CG6692-RD,	FBgn0013770,	Cp1,	1	.
CG1749-RA	GGCTACAATGCCCTTAGCGACTTCTTTCCCAAGATGACGCTCAAACCGAATCCGCAGTGCGATGACAG	68	+	chrX	11378646	11378714	11378646..11378714	CG1749-RA,	FBgn0030305,	CG1749,	1	.
CG14454-RA	CTGCACCAACTAATCAGATTATTAGATTGATCTCTTTCTTTGGAGGTATTTTTGAGAAGGCATGCCTGC	69	-	chr3L	22685124	22685193	22685124..22685193	CG14454-RA,	FBgn0037177,	CG14454,	1	.
CG30470-RA	GACCGCTCCACAATGACACTAGCAACAACCATGTCATGCCGATGCAGAAATCGTTCCATCTCCCAGCC	68	+	chr2R	11348788	11348856	11348788..11348856	CG43223-RI,	FBgn0262868,	CG43223,	1	.
CG11384-RA	GCAACACTACCGGGAACCCGATGACAAATATAACCTAACCAATCTGACGGATGATCGCAGCGTCTGG	67	-	chrX	1068463	1068530	1068463..1068530	CG11384-RA,	FBgn0040363,	CG11384,	1	.
CG10931-RA	TGGAATTGATTGAAACAGCTTCGACTCCTGGAGATTCCGAAACTGAAATCGCCATCCCGGAGGCCG	66	+	chr2R	13636523	13636589	13636523..13636589	CG10931-RA,	FBgn0034274,	CG10931,	1	.
CG15015-RA	TTGGCGAGGATACCTACTATGAAACGGAAGTGGAGACCCTTAATCCAGTGGGAAAATGTCGTGCCCTGT	69	-	chr3L	4324295	4324364	4324295..4324364	CG15015-RA,CG15015-RB,CG15015-RH,CG15015-RI,CG15015-RF,CG15015-RG,CG15015-RC,CG15015-RD,CG15015-RE,	FBgn0035533,	Cip4,	1	.
CG2819-RA	GTCGCCCTCTAGGCTGTCACCGAATATATTTCTCAACCTCAACATTGACCACTTGGGACTGGAGCG	66	+	chr2L	578574	578640	578574..578640	CG2819-RA,	FBgn0023489,	Pph13,	1	.
CG1101-RA	CGTCGGTAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTCTTCAACGACTTTGGTCCG	67	-	chr3R	2905021	2905088	2905021..2905088	CG1101-RA,	FBgn0010774,	Aly,	1	.
CG32396-RA	CCGTCGCCGAATATGTCGCAGGTGGTTGTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTTG	66	+	chr3L	6524521	6524587	6524521..6524587	CG32396-RA,	FBgn0052396,	CG32396,	1	.
CG10284-RA	CCATGGAAAGGGCTTTCTCCAGACGCAGAGCAATAATGAGACGCTCGATAGGTAGCCACATGCGCA	66	+	chr3R	2202874	2202940	2202874..2202940	CG42564-RA,	FBgn0260766,	CG42564,	1	.
CG2003-RB	GGGGCCCAAAAAAATGGAGATTCCCTGGAAAGGCATTTTTACCTCTGTTCCAGTCTACGCCCTTCTC	67	+	chr3R	27815845	27815912	27815845..27815912	CG2003-RA,CG2003-RB,	FBgn0039886,	CG2003,	1	.
CG32262-RA	AGGGACCTCTTCACCACTACGTGTACAACTGGATGGACAGGGTAATGCCGGCTCGTACGCTAAAGAACA	69	-	chr3L	3809652	3809721	3809652..3809721	CG32262-RA,	FBgn0052262,	CG32262,	1	.
CG15408-RA	ACCTTCTCTGCCATGGTTATGCTATCGGTCAATGTGGGAATCCTGGTGGGCTATATCATCGGCACCCA	68	+	chr2L	3333649	3333717	3333649..3333717	CG15408-RA,CG15408-RB,	FBgn0031523,	CG15408,	1	.
CG3604-RA	CCTCCACGGACTCAACAACCGAACAAAACAGCGAAGTGGCCACAGAAACTAGCACCTCGTCTTAAAAAA	69	-	chr2L	3697368	3697437	3697368..3697437	CG3604-RA,	FBgn0031562,	CG3604,	1	.
CG3542-RA	GGAGAGGTAGCTAGCCCTGGACTCAGTTGCTGGACAAGTTCTCTTTTCAGTCCTTGCCTTCCACTGCAC	69	+	chr2L	3026191	3026260	3026191..3026260	CG3542-RA,CG3542-RB,	FBgn0031492,	CG3542,	1	.
CG6412-RA	AGCCGAAAACTAAACTATCGACGCTTACCAGTCGTTCACCTATCGAGGCACCACACTCGCTTTGGATTT	69	-	chr2L	17500940	17501009	17500940..17501009	CG6412-RA,	FBgn0032646,	CG6412,	1	.
CG32021-RA	GAACATCTCGGCGAGAAAGTGTTCCATCAGCAAAATCAACAGGCCGGGCAGACCAGATCGTAGGG	65	-	chr4	928162	928296	928162..928176,928245..928296				0	no match
CG11470-RA	CGGCTTGCATCTCGGCCTATGACAATTGCACATCCCATATCAGCGAGAAGTATGCCGAGGATCGC	65	-	chr3R	25415199	25415264	25415199..25415264	CG11470-RA,	FBgn0039671,	CG11470,	1	.
CG17734-RA	CTCGAACTGCTGTCCATTGCAGAAAGTTTCGCGAACGTTGCCAAGCGATTAAACCGATCCGAACC	65	-	chr3R	7069627	7069692	7069627..7069692	CG17734-RA,CG17734-RB,CG17734-RC,	FBgn0037890,	CG17734,	1	.
CG18157-RA	TCCAAAGCACCAAAGGCACCCAAGCCACACAAGCCGAAATCTTTTTCCGACAAAAAGGCGGAATCAG	67	-	chrX	14209084	14209151	14209084..14209151	CG18157-RA,	FBgn0030563,	betaNACtes2,	1	.
CG14913-RA	TGACGCGGATAGAGCTACCAGTTCGTGTTCACATGCGTCACTGGTTCTTGGGCTATCTAACTGCGGACT	69	+	chr2L	11017967	11018036	11017967..11018036	CG14913-RA,CG14913-RB,	FBgn0032331,	CG14913,	1	.
CG4454-RB	GCGCCTGTACGAGCTGAAAATGGATTCCCGCCTTATCAGCATCGATTCGCTGGAGACCAAGTTCCTC	67	-	chr2L	9252851	9252918	9252851..9252918	CG4454-RA,CG4454-RB,	FBgn0032105,	borr,	1	.
CG1469-RB	CCTTGGCCAAGGATGATGAATATTGCCAGAACACTGTAATCACCGCATGCTCTACGTCAGCCTTTTCGG	69	+	chr3R	26214981	26215050	26214981..26215050	CG1469-RA,CG1469-RB,CG1469-RC,	FBgn0015221,	Fer2LCH,	1	.
CG1086-RA	ATCAACGCCGTCTTCTACTATTCCACGTCGCTGTTCATGAGCTCGGGATTGACTGAGGAGAGCGC	65	+	chr3L	982004	982069	982004..982069	CG1086-RC,CG1086-RB,CG1086-RD,CG1086-RE,CG1086-RI,CG1086-RJ,CG1086-RK,CG1086-RL,CG1086-RM,CG1086-RN,	FBgn0261914,	Glut1,	1	.
CG7660-RA	TGATTTTGGTCGTGATCTGCTGCCCTTGACAAACGACAAGAAGGCATGTCCCAGTGAGGAAGCCG	65	+	chr3R	13547013	13547078	13547013..13547078	CG7660-RB,	FBgn0261987,	Pxt,	1	.
CG3430-RA	ATGAGACAAACAAGCTGGTTTCCGGCGTACTACAGTTGGCTCCCCATACGCATTTGGTGCTCGAC	65	+	chr2L	6958353	6958418	6958353..6958418	CG3430-RA,	FBgn0031875,	CG3430,	1	.
CG5560-RA	GGATCAGAACCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGATTGTCCAGG	67	+	chrX	14962030	14962097	14962030..14962097	CG5560-RA,	FBgn0030607,	dob,	1	.
CG7977-RA	CTATAAACAAAGTAATGCTAAGCTGACACGGTAGAGCGAGGATGAACGTTTCAAAGTTGTCTGGG	65	-	chr3L	1667214	1667279	1667214..1667279	CR42453-RA,CG7977-RA,	FBgn0083121,FBgn0026372,	Uhg7,RpL23A,	2	.
CG30084-RB	ACCGAACTACCGAACCCCAGATAACTATGTATGTACTGTGGCCAGAGTTAATTTACTTAGTTGAGCCTG	69	-	chr2R	11650292	11650361	11650292..11650361	CG30084-RG,CG30084-RE,CG30084-RF,CG30084-RC,CG30084-RI,CG30084-RJ,	FBgn0083919,	Zasp52,	1	.
CG18000-RE	GGGCTTGGGAATGAAGGTACGAGGACTGAAGATGGAGCTACGTCCCCTCAACTGAAAGAGCCCAAATGT	69	.	.	.	.	.	CG32823-RB,CG18000-RE,CG33499-RA,	FBgn0052823,FBgn0003654,FBgn0053499,	Sdic3,sw,Sdic4,	3	.
CG3476-RA	TGGAGGAGGTCGAAATCAGCACAGAAAAGAAATCCAATCCCGTAAAGTCATTTATTGCGGGCGGC	65	+	chr2L	7027811	7027876	7027811..7027876	CG3476-RA,	FBgn0031881,	CG3476,	1	.
CG3615-RA	CGCACACGACAAAGGTTCGCCAGGAGTTTAGCAACTTCTTTCAGTTTAAGGCTGGCTACCTACTCAGCG	69	+	chr2R	12183526	12183595	12183526..12183595	CG3615-RA,	FBgn0034110,	Atg9,	1	.
CG13640-RA	GGAGGCTACGGTCAGGGAAACTACGGCTATGGAAGCTATGCTGGAGGATATGGTTACAACTATCCCGCA	69	-	chr3R	20687649	20687718	20687649..20687718	CG13640-RA,	FBgn0039237,	CG13640,	1	.
CG33206-RA	TGTATGTGTATATGTGCAACACTAGCAACTTGTAAATATGTAATATGCAACTTGAACATGTCGAGGG	67	+	chrX	15404630	15404697	15404630..15404697	CG33206-RA,CG33206-RB,	FBgn0027287,	Gmap,	1	.
CR30066-RA	GTTTGATGTTTTGCATTCGAAACTATTGGGTTTGTTTCCCTAGCAACTTGGAAAAACGTGCTGAA	65	-	chr2R	10177211	10177276	10177211..10177276				0	no match
CG11585-RA	GGGAGGTTCCAGTGGCTCCTACTCAGCTCCAGTTGCATCATATAGCTCCTATTCCGCTCCAGCTG	65	+	chrX	14084216	14084281	14084216..14084281	CG11585-RB,	FBgn0030543,	CG11585,	1	.
CG14760-RA	TGGCCTATGTCGCCTCCTTACTTTACGACGTCGAAGAGTCCAGAAAGTCCAGCACCACTATTTACCTTG	69	+	chr2R	4142770	4142839	4142770..4142839	CG14760-RA,	FBgn0033277,	CG14760,	1	.
CG2221-RA	TGGCAAGTTTACGTTCAGCGTGACCCTGTACCAGAGTGGCGACATTGTTTTCGCATACATGCTGGTG	67	-	chrX	10253038	10253105	10253038..10253105	CG2221-RA,	FBgn0028331,	l(1)G0289,	1	.
CG5315-RA	TGCGCTGCTGATCATGGGTTCCTTTGTGCCTTGGCTGTACTATGGCTTCTACTGTCATTACCAGCCAAA	69	-	chr3R	18370694	18370763	18370694..18370763	CG5315-RC,CG5315-RB,CG5315-RA,	FBgn0038984,	CG5315,	1	.
CG11238-RA	GGAGGCGGAAGGTACGTTGCAACTGTCGACACTGAGACAGGAGAACGAACGTCTACAGCGGGAGC	65	-	chr3L	22732919	22732984	22732919..22732984	CG11238-RA,	FBgn0010830,	l(3)04053,	1	.
CG7596-RA	ACGAAAATCGAAGAAAAACCAGTATCAGAGCCTGAAATTGAATCCGAAATAAAGAACTCTACGAGCGTC	69	+	chr3R	13421185	13421254	13421185..13421254	CG7596-RA,	FBgn0003375,	Sgs5,	1	.
CG6580-RA	GCCTGGACTACTACGGCAGCCACTATATCACCTCCAACCACCTGTGCTATGCCACTCCCGAGAATAAG	68	+	chr3L	6046049	6046117	6046049..6046117	CG6580-RA,	FBgn0035666,	Jon65Aii,	1	.
CG33007-RA	GGCGATGAGGAGATGGAGAGATGCGAATTGAATACGGCAAGTCGTGGTCACGAATGGATGCTCCGCA	67	-	chr2R	9033906	9033973	9033906..9033973	CG33007-RA,	FBgn0053007,	CG33007,	1	.
CG4860-RA	ACGGTGGACAAGAGCATGAAACACAAGGGAATCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTC	69	-	chr3R	8046309	8046378	8046309..8046378	CG4860-RA,	FBgn0037999,	CG4860,	1	.
CG10755-RA	AGGCGTTATTCTCTCGGATTTCGCGACGTTACCGTATCTAAGCTGCGTGGTCAAAGAGTCCCTGCGTCT	69	+	chrX	2074269	2074338	2074269..2074338	CG10755-RA,	FBgn0015036,	Cyp4ae1,	1	.
CG7816-RC	CTAGCCGAGTCATCATCGATCACGGCACATACTCCACCGAAAGTCACTGGACATGAGCAGGCAGC	65	-	chr3R	25691060	25691125	25691060..25691125	CG7816-RA,CG7816-RC,	FBgn0039714,	CG7816,	1	.
CG33335-RA	ACGATGCCTGTGACACAGTTAACTCATGCTCGACACCAAAACATATATCAAATGTGTGGCACGAC	65	-	chr3R	17989708	17989773	17989708..17989773				0	no match
CG7023-RA	TCAAGGTCTCGCATCGCGTTGTGTTTCCACTGGAACTGAGGCTCTTTAACACCTCCGATGATGCAGTGA	69	+	chr3R	18601645	18601714	18601645..18601714	CG7023-RB,	FBgn0039025,	CG7023,	1	.
CG6545-RA	AGCAAGATTTGAGTGTACAAGGCTTGTCAGTATCGTCAGTACCGACTTGCAGTGTAGTGACAAAGCCGT	69	-	chr3R	17271896	17271965	17271896..17271965	CG6545-RA,	FBgn0011278,	lbe,	1	.
CG7544-RA	TGCCTGTGCAATCCACCCTTCTTCGACTCGAACTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCA	69	+	chr2R	11036134	11036203	11036134..11036203	CG7544-RA,CG7544-RB,	FBgn0033994,	CG7544,	1	.
CG10639-RA	TGGAGTACGTGCCCAAGCAATGGATCTGGATGGCAATCTGGTGGACGATTTTGTTTTCGATCGCGGA	67	-	chr2L	18972291	18972358	18972291..18972358	CG10639-RA,	FBgn0032729,	CG10639,	1	.
CG1506-RA	GAGTCCAAATCCCACCATATACAACTAAAACCCACGTGTCAGTCCAAATTGAGAACAAAAGATACTACA	69	+	chr2L	21647321	21647390	21647321..21647390	CG1506-RA,	FBgn0023416,	Ac3,	1	.
CG17821-RA	AGTGTCTGCAGGAGCATACATAATCAGGTGTTATTGTGTTTTGGGTCCGCATACACTGTTGCAGGTGCA	69	-	chr2R	14632287	14632356	14632287..14632356	CG17821-RA,	FBgn0034383,	CG17821,	1	.
CG31531-RB	TGTCAGAGCAGCTCACTCGAAGGCTTTGATGGACACTTGTGAGCAGATCATTGCAGAGGAGCGCAAAG	68	+	chr3R	529641	529709	529641..529709	CG31531-RA,CG31531-RB,CG31531-RC,	FBgn0051531,	CG31531,	1	.
CG18870-RA	ACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATATCACCAATTGCCTGTATCCGTGC	68	-	chr2R	17503516	17503584	17503516..17503584	CG18870-RA,	FBgn0042180,	CG18870,	1	.
CG10679-RA	CCCTGACCGGCAAGGAAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG	65	-	chr2L	18951471	18951536	18951471..18951536	CG10679-RA,	FBgn0032725,	Nedd8,	1	.
CG14830-RA	TCCTGGTGACGCTAGGATTCGTCATTGTGGTGCAGTTCTATGAGCCACTGTACGTGTGGATACTGGGAA	69	-	chr3L	7244452	7244521	7244452..7244521	CG14830-RA,	FBgn0035755,	CG14830,	1	.
CG14549-RA	ACAGATTACAGCTCAGAAGGTTCTGGAAATCATAGAAACCGCGTGGATAAATGAAATGTGTGCGCCGGA	69	-	chr3R	21881992	21882121	21881992..21882042,21882102..21882121	CG14549-RA,	FBgn0039403,	Sld5,	1	.
CG5670-RD	AATGAAAACCCCTAGCGTAGTTACCAAGTAAGCCGTGAAAAGTAAAGCCCAATAAAAACCACAACAACA	69	+	chr3R	16800372	16800441	16800372..16800441	CG5670-RD,	FBgn0002921,	Atpalpha,	1	.
CG31672-RA	GCAGGCTTCTAGTGCCACAGATGGGATTTTCGTACCCCAAGGATCCGAAAAGGCTTCACGAATCCGAC	68	+	chr2L	2046576	2046644	2046576..2046644	CG31672-RA,	FBgn0028952,	CG31672,	1	.
CG6157-RA	CCCTGTTAGAGATCAGGATCACCTTCATACTGCTGTGCAAGCTATATAGCAGCGATCACCTGGTGGGC	68	+	chrX	15223062	15223130	15223062..15223130	CG6157-RA,	FBgn0015926,	dah,	1	.
CG31797-RA	GTTGCCAGTGCGAGATCTGTCACTTCATGGATCGCCCTTTCAACGAACAGGAGGCTCCCTTCATG	65	-	chr2L	19259844	19259909	19259844..19259909	CG31797-RA,	FBgn0051797,	CG31797,	1	.
CG14497-RA	GGTCAGCCCGAGTACACCAACAATGAGTTACCATCTGGCGGTCTAGATGATGTGGACATTGAGGGCGA	68	+	chr2R	13980093	13980161	13980093..13980161	CG34386-RC,	FBgn0085415,	CG34386,	1	.
CG32444-RA	GCGACCGACTCATGCAGTTCGAAAATCGTCAGATCAAGGGCTACGACAACTGCTTCGTGGTCAACGG	67	+	chr3L	21631646	21631713	21631646..21631713	CG32444-RA,	FBgn0043783,	CG32444,	1	.
CG32161-RA	TGGTGCGAGGAACTGGACCAACGACTAGTGGAGTACATGCTATCTGCAGTCGTATTGATGGCCAGCG	67	+	chr3L	16839573	16839640	16839573..16839640	CG32161-RA,	FBgn0052161,	CG32161,	1	.
CG15024-RA	CCGCCCGAGCAGATGTCTCCCAGTTGGTGAGATCTGGCAATGGATTTGTTTACGATGTACCCAAAGTCA	69	-	chr3L	4463253	4463322	4463253..4463322	CG15024-RB,	FBgn0040699,	CG15024,	1	.
CG5676-RA	AAGAAAGTGGCGAAATGGTACACCAAACTGATTGGCGATGAAGAGGGTCCAAAAGTCAACGATCTGCAC	69	-	chr2L	10254885	10254954	10254885..10254954	CG5676-RA,	FBgn0032200,	CG5676,	1	.
CG6457-RA	GCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATGCCAGGAAACCTTCGGAAGCCTGA	69	+	chr3L	6028936	6029005	6028936..6029005	CG6457-RA,	FBgn0040060,	yip7,	1	.
CG14387-RA	ACATCCAGCCAGTTTGTGAACATTGTGATCGGTTTCCAGCAGCTATATGACATGGACGTGGTGGATCGC	69	+	chr3R	8717950	8718019	8717950..8718019	CG14387-RA,	FBgn0038089,	d-cup,	1	.
CG9975-RA	AACAAACGCTTATCTGAAAAAGGCAGTCGTCTTTGAAAACAAAGTTAAAACACGTGCACACTTTT	65	+	chr2R	15232967	15233032	15232967..15233032	CG9975-RA,CG9975-RB,	FBgn0034435,	CG9975,	1	.
CG9867-RA	CGAGGAAATTCTTTCCCACAAGGAATTCCCCCGACGGGCATCAGAAAATCCCTCCAAAACGCAGC	65	+	chr2L	2382925	2382990	2382925..2382990	CG9867-RA,	FBgn0031421,	CG9867,	1	.
CG5114-RA	GCTGTTCTGCACTAACAACGGTCCGGTTAGCACAATCCAGTCGGAACACGGAATTGAGTGTCTGGCC	67	+	chr3L	14977019	14977086	14977019..14977086	CG5114-RA,	FBgn0036460,	CG5114,	1	.
CG31954-RA	ACATATGGTAAAACGGCAGATCGCCTGAAAGTGCGACTCGGAACCAGCGAATTTGCTCGCAGTGG	65	-	chr2L	3509667	3509799	3509667..3509727,3509794..3509799	CG31954-RA,	FBgn0051954,	CG31954,	1	.
CG4803-RA	CCCTGCTGTTGATGGAATTCGTAGACGGTGGATCTCTGTCCAGTTTTCTGCACGCGAAAAGCAAGCCAA	69	-	chr3R	18559176	18559245	18559176..18559245	CG4803-RB,	FBgn0039015,	Takl2,	1	.
CG18466-RB	AGCCAGGAAGCAGTTCGATGATCGCAAGTCCTCCTGAAGATTCACCAGTAACTATCGTGCTTCGCTGGC	69	-	chr3R	4868346	4868415	4868346..4868415	CG18466-RB,CG18466-RA,	FBgn0010222,	Nmdmc,	1	.
CG11029-RA	GCACTGGAAGCTGTTGACAGTGTATGTGGGAAACAACGACATCTGCTCCGACCTGTGTCACTGGGA	66	+	chr2L	5746998	5747064	5746998..5747064	CG11029-RA,	FBgn0031735,	CG11029,	1	.
CG3509-RA	AACCCCAAGTCGATGGTCCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGG	66	+	chr3R	10489579	10489645	10489579..10489645	CG3509-RA,	FBgn0038252,	CG3509,	1	.
CG32918-RC	CGCACCCAGTACCTGAACGTGCTCATCAAGAAGTTCGCCAAATTCATTTCCCATCTGGCCACAAC	65	-	chrX	6187597	6187662	6187597..6187662	CG15891-RA,CG15892-RA,CG15892-RB,	FBgn0029860,FBgn0029859,	CG15891,CG15892,	2	.
CG14872-RA	TCCGTTGAATTCCCCTGGAACGAAGATACGCAAACCGGCATCTTCAAACTCGATTACGATACGGTCACT	69	-	chr3R	11334059	11334128	11334059..11334128	CG14872-RB,CG14872-RA,	FBgn0038346,	CG14872,	1	.
CG8085-RA	CAGCTACTCGCTGTACAGCAATGGATTTGTGGTGACCACTATCGATAGTGAACAAGATCCCGCCC	65	-	chr2R	9874847	9874912	9874847..9874912	CG8085-RA,	FBgn0020620,	RN-tre,	1	.
CG16849-RA	ATCATTCGTTTGGCCTACCAGGAGAACGAGGCTCTGATCCACCAAAAAGTTATGAGCGCGATGAAGCA	68	+	chr2L	13459914	13459982	13459914..13459982	CG16849-RA,	FBgn0261992,	CG42810,	1	.
CR40456-RA	TAGTATCTAGGACTACCACGGTTGCAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGA	65	.	.	.	.	.	CR41602-RA,CR41590-RA,	FBgn0085813,FBgn0085807,	CR41602,CR41590,	2	.
CG2948-RA	AGGGCGAACCGTTTACCTCCTTCCTTTGGCTAGGGTAGATGATTTGGGACTGAAAATGGATGTCCTCAT	69	+	chr3R	1415182	1415251	1415182..1415251	CG2948-RA,	FBgn0037345,	rev7,	1	.
CG7614-RA	ATCGGAGGAGGGTCCACTTTTCGTATACGAGCCACTTGTTCCTTTCAGTGAGGGACCTGCCATGC	65	-	chr2R	6626432	6626497	6626432..6626497	CG7614-RA,	FBgn0024956,	Mat1,	1	.
CG31128-RA	TCGGAATATGCGATAGTGGGGAGAGATATTCATAAGTCGAAAACCAATAGTGGCTTTTCAAAAAA	65	+	chr3R	20295941	20296006	20295941..20296006	CG31128-RA,	FBgn0051128,	CG31128,	1	.
CG3656-RA	GGGAGCGAGTCTACTGAACCACAACATCGCATTATATCTTTACGCTTGTCAATTAAAATATATTCAAAA	69	-	chrX	2053195	2053264	2053195..2053264	CG3656-RB,CG3656-RA,	FBgn0005670,	Cyp4d1,	1	.
CG5406-RB	AGCAGGCGAACCCAAAAGCATTTTTCAAGCTCAATTCTGCGATATGAAGATGCATTGAATCACCGGCCA	69	+	chr3L	5739868	5739937	5739868..5739937	CG34418-RB,CG34418-RA,CG34418-RC,CG34418-RG,	FBgn0085447,	sif,	1	.
CG8972-RA	GGGAGCTGAGGCAATAGAGCGGTAGCGAGTAGCACTACGCTGTGTCAATAAGAGTGACATCGTTCTGCC	69	-	chr2R	7874271	7874340	7874271..7874340	CG8972-RA,CG34231-RB	FBgn0033672,FBgn0085260	rho-7,CG34231	2	.
CG8821-RA	GCAGACCGATTGAAAAGAACCATTTTTAAAAATCAATTGAAAAAATTTGTTTTTGAACCCTAGTTGGCC	69	-	chr2R	8398163	8398232	8398163..8398232	CG8821-RA,CG8821-RB,	FBgn0033748,	vis,	1	.
CG4421-RA	ACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCATCTATCCACAGATAAGGAATAATCATCCCGCCG	69	+	chr3R	8206055	8206124	8206055..8206124	CG4421-RA,	FBgn0010044,	GstD8,	1	.
CG9412-RC	AGTAGTTGGAGCAACATAAAACGTCAACTGTCCTTTAAATGTTCCTGAGCGCAACTCTCGGGGCGTCGA	69	+	chr3R	9477489	9477558	9477489..9477558	CG9412-RA,CG9412-RB,CG9412-RC,CG9412-RE,CG9412-RD,	FBgn0015778,	rin,	1	.
CG32690-RA	TACGACACTGGATGGTAACACGATGGTAACACGAATTGATACTGCGTTGATTTGGATCGTTGAACACAG	69	+	chrX	10098938	10099007	10098938..10099007	CR32690-RB,	FBgn0052690,	CR32690,	1	.
CG8936-RA	ACCGGGAATGTAAAAGACTCACTAATATACTGCCGATCTTAGAGTATTTACCACCAAAATTTACGAATA	69	-	chrX	16998618	16998687	16998618..16998687	CG8936-RA,CG8936-RB,	FBgn0065032,	Arpc3B,	1	.
CG5451-RA	GCGCATCATCACCGGTCAGTGTTTGCGTAAATTCGAGAAAGCCCACACCAAGGGAATAACCTGTCTGCA	69	-	chr3R	14805435	14805504	14805435..14805504	CG5451-RA,CG5451-RB,CG5451-RC,	FBgn0038666,	CG5451,	1	.
CG6982-RA	CCGACCACGACGATTGAGACCATCACAATCACGAGGCCGCTGAAGGTGATTGCATTTATCTGCGG	65	+	chr3R	18554961	18555094	18554961..18555006,18555074..18555094	CG17618-RB,CG17618-RC,CG6982-RB,CG6982-RC,	FBgn0040587,FBgn0039014,	CG17618,CG6982,	2	.
CG4377-RA	GTGCGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTGTTCGAGAACCACTCGT	69	-	chr2R	17723668	17723737	17723668..17723737	CG4377-RA,	FBgn0034664,	CG4377,	1	.
CG30295-RA	TGAGGCTGCTAGTACGACAAGTCGCAACGTGAATCAGAATGAAAGCCAAAAACTGAATCGAAATGAGCC	69	+	chr2R	16765557	16765626	16765557..16765626	CG30295-RA,CG30295-RB,	FBgn0050295,	Ipk1,	1	.
CG9539-RA	TAACCTGCTTTGTTTTTTTCGTCGTCTGTCAAAACAACCACAGTAAGCGTAAATTGTAAGGCCTTTGGC	69	-	chr2L	6477474	6477543	6477474..6477543	CG9539-RA,	FBgn0086357,	Sec61alpha,	1	.
CG30372-RA	CGAGGAAGGGCATGTTTCCCGTCAGTTTCGTGCATATGCTGCCTGATTAATCAATCCCCTGTTTGTGCT	69	-	chr2R	4002751	4002820	4002751..4002820	CG30372-RB,CG30372-RC,	FBgn0050372,	CG30372,	1	.
CG12443-RA	TTGCACCGTCACTCTTCAGCGTGGACAAGAACATCAACAGCAACCTGAACAACACACTAACGGAGGCTT	69	+	chr2R	7698957	7699026	7698957..7699026	CG12443-RA,CG12443-RB,CG12443-RC,	FBgn0033652,	ths,	1	.
CG18096-RA	TCGATAGGGCTGTGGAATTTGTGGTTACGGAGGTGCACCAGTCAAATGAGCCGTATGATCTGGCCATTG	69	-	chr2L	15889648	15889717	15889648..15889717	CG18096-RA,	FBgn0041183,	TepI,	1	.
CG12452-RA	ATGTTCGATGCTCTGCTCCGCGATGATCACGAACATCGGCTGAGCTTGGATGCAGTGCATCGCAT	65	+	chr3L	20812368	20812433	20812368..20812433	CG42341-RV,CG42341-RO,	FBgn0259243,	Pka-R1,	1	.
CG32637-RA	CGCCAAGTACTGGGATCACCTGTACAGAAAGCAGCCATTCGGGAGACACGATAATCTCAGGATTGGCGA	69	-	chrX	13066778	13066847	13066778..13066847	CG34411-RB,	FBgn0085440,	CG34411,	1	.
CG12393-RA	GGCTGCACCATTGAGCTGTCTAACGAGGTGGACAACTACTGCTTCGAGATCGCCTTCAACGGCAA	65	+	chr2L	6049138	6049203	6049138..6049203	CG12393-RB,CG12393-RA,CG12393-RC,	FBgn0031768,	CG12393,	1	.
CG8053-RB	GCAGCGGCAGTTAAATTGCGAAACCAAACCTATAGTATCAGTTCATTTATAGCCATTTTTAATGTTCTA	69	+	chr3R	14107885	14107954	14107885..14107954	CG8053-RA,CG8053-RB,	FBgn0026250,	eIF-1A,	1	.
CG10633-RA	GAGGCCGATGAAGACGAACCAGTGGATCCAAATCCAGTCTCCACAGATCCTGCCAAATCCTATCGGGAT	69	-	chr3L	5372562	5372631	5372562..5372631	CG10633-RA,	FBgn0035604,	Ir64a,	1	.
CG13050-RA	ATTGGGCTACCATGCACCCATCATCTCCAAGACGATCATCGGCAAAAGCTACTTGGGCGGCTATG	65	-	chr3L	16271879	16271944	16271879..16271944	CG13050-RA,	FBgn0036591,	CG13050,	1	.
CG1242-RA	GCGACCAGTCGAAACAAACAACCAAAATTCATTCTATCACTCGCATTCACATACACAATTTACTTGCGT	69	+	chr3L	3196652	3196721	3196652..3196721	CG1242-RA,	FBgn0001233,	Hsp83,	1	.
CG4463-RA	GGTGGAGCAGGACAATGGCAACGATAAGTAGAGGACTCGTTCCGAGAGATGCCCTGCATTATTTAACCA	69	+	chr3L	9375627	9375696	9375627..9375696	CG4463-RA,	FBgn0001224,	Hsp23,	1	.
CG8927-RA	TGGCAACAAACGTGAGTACCACTATGAGACTGGAATCAAGTGCGATCCTAACAACCGCAACAACGAGGA	69	+	chr3R	12011637	12011706	12011637..12011706	CG8927-RA,CG8927-RB,	FBgn0038405,	CG8927,	1	.
CG13874-RA	GTTCACCCTATTCTGTATTGCTCTGGCAGCTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCA	69	+	chr2R	15703086	15703213	15703086..15703135,15703193..15703213	CG13874-RA,CG13874-RB,	FBgn0034475,	Obp56h,	1	.
CG1896-RA	CGGCGACGCTTATATAGACGAAGCCAACATCGGGTGATACGTGCAACCGTCAAATCTGAGGCTGCAGAA	69	+	chr3R	27570262	27570331	27570262..27570331	CG1896-RA,	FBgn0039870,	CG1896,	1	.
CG10669-RA	GCAAGATTTGTGACATCCAGTTTGTCAGCGTGGCAGACTTGCGAAGGCACATATCTATGCAGGGCCACA	69	-	chr3R	21158322	21158391	21158322..21158391	CG10669-RA,CG10669-RB,	FBgn0039329,	CG10669,	1	.
CG18301-RA	CCCAATGTGGTGGAAAAGTATCTCGTTCCGAATGAAAACTTTAACCACTTCGATCTGGTCTGGGGCAGA	69	+	chr2L	10533393	10533462	10533393..10533462	CG18301-RA,	FBgn0032265,	CG18301,	1	.
CG5058-RD	TACCGAATCTATCTATTAGGTGCATCTAACGAAAGGAATCATTAGCTCTGCACGAACTCTAGCCGTAGC	69	+	chr2R	13728868	13728937	13728868..13728937	CG42311-RI,CG42311-RJ,CG42311-RK,CG42311-RH,CG42311-RL,CG42311-RM,CG42311-RN,CG42311-RO,	FBgn0259211,	grh,	1	.
CG6707-RA	ACCCCGATCTGTGTTGGCAGTCATTAGTTATTAGACCAGCGACCGATCAATCCACAGTGCATCTCATTT	69	-	chr3L	9888440	9888509	9888440..9888509	CG6707-RA,CG6707-RC,CG6707-RB,	FBgn0036058,	CG6707,	1	.
CG1866-RB	GGGCCGAAAACGTCAGGATTCGCCGAGTAAGAAGCGTCCCAATTCAACGGAAAGAAAGTGGCGTGACTC	69	+	chr3R	24169752	24169821	24169752..24169821	CG1866-RA,CG1866-RB,CG1866-RC,	FBgn0039581,	Moca-cyp,	1	.
CG13925-RA	ACACCATCCTCAAGGATACCAACAGCAAGCCCATTCTCAAGTTCAGTGTCAGCGCGATCCTTGGC	65	+	chr3L	1921835	1921900	1921835..1921900	CG42234-RC,	FBgn0261723,	Dbx,	1	.
CG32680-RB	AGCCGGATCAGTGCCATCCTGGTGAGCAGAACACCTGTGACCACTACGACATCAAACAGTTCTTTCACT	69	-	chrX	10386736	10386805	10386736..10386805	CG34414-RI,	FBgn0085443,	spri,	1	.
CG30268-RA	GCAAGGCTCAGAACATCATATATGTGCAGCCTCATGTGCCGATAGTAATGGAGGACCTGGGCATTCCCG	69	+	chr2R	18603533	18603602	18603533..18603602	CG30268-RB,	FBgn0050268,	CG30268,	1	.
CG31882-RA	AGCCCGACAGCTTATTTGGGATATCGTTTCCGATTGGGCAGATAGATATAGGGTCCGCTTTGTGTCAAT	69	-	chr2L	9624833	9624902	9624833..9624902	CG31882-RA,	FBgn0051882,	CG31882,	1	.
CG30472-RA	TGGAGGGCTATTTCACATTGATAGTCGCATCTTTAATTTGTAAATTCCAAGACAAGCAAGATGAGTGTA	69	-	chr2R	11310876	11310945	11310876..11310945	CG30472-RA,	FBgn0050472,	CG30472,	1	.
CG11241-RA	TCTAAGCAGATCTCTAAGTAGTTACTCCTAACAAAGACTTATGGACCTCTAAATCGTCAACTGTTCAAT	69	-	chr3L	22727579	22727648	22727579..22727648	CG11241-RA,	FBgn0037186,	CG11241,	1	.
CG32859-RA	GCGAACAACAATGAATATCCCACACAAGGTCCCCAAAAAGTGGAGTCACCAACTGATGTTACCCAGCCT	69	-	chrX	1054003	1054072	1054003..1054072	CG32859-RA,	FBgn0040368,	eIF4E-7,	1	.
CG10021-RD	TGCACCACCGAGAAGAACAGGGTTCAGCATTGAGGACATAATGAGGCGTTAGAAGTAAACCGAGAAAGA	69	+	chr2L	3783232	3783301	3783232..3783301	CG10021-RB,CG10021-RC,CG10021-RD,CG10021-RA,CG10021-RE,CG10021-RF,CG10021-RG,CG10021-RH,	FBgn0004893,	bowl,	1	.
CG4006-RA	AGCGACTTAGAGCGACTTAGTGCTAGGATAAAGCATGCATCATCGGATCGCATCCTCTAGGGGTCGCTT	69	+	chr3R	11929249	11929318	11929249..11929318	CG4006-RB,CG4006-RA,CG4006-RC,	FBgn0010379,	Akt1,	1	.
CG12501-RA	GCCCACTCGGATATCCAGAACTTGATGCACGAAGCAGATAATCGGGAGATGGAACTTTTGGTCGCCACT	69	-	chr2R	15658229	15658298	15658229..15658298	CG12501-RA,	FBgn0034473,	Or56a,	1	.
CG1070-RC	CTCCAACAGAACCACCACAAATTTTGTTTAGCCAATCGAGTAGCCACACCATGAACATAGCGACAACCT	69	-	chr3R	2920454	2920523	2920454..2920523	CG1070-RC,CG1070-RE,CG1070-RH,CG1070-RI,	FBgn0261238,	Alh,	1	.
CG7392-RA	CGCAGGAGATGTCTGGCAACACGGGGAAGTTCATTAACAAGGTGGTGTCACACCCAACGCTACCC	65	+	chr2L	8037824	8037889	8037824..8037889	CG7392-RA,CG7392-RB,CG7392-RD,CG7392-RC,CG7392-RE,CG7392-RF,	FBgn0044323,	Cka,	1	.
CG13632-RA	TTTGATGGATGTGGCCTTGCAGCAGAGTGTGCGACAGGGTCTCGATGCCATGACCGAGCTGTACG	65	+	chr3R	20601542	20601607	20601542..20601607	CG42331-RB,CG42331-RD,	FBgn0259233,	CG42331,	1	.
CG1360-RA	CACCTCCAGCCACAAGAACTGATGCAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGC	65	-	chr2R	3476859	3476924	3476859..3476924	CG1360-RA,	FBgn0033195,	CG1360,	1	.
CG9392-RA	TCGGGACCCATTTTCCTCCATCAAAGGCTCCTGTAAAGACCACACCTAACGTAGCACCACCTTCTGGAA	69	+	chr3L	19615917	19615986	19615917..19615986	CG9392-RA,	FBgn0036895,	CG9392,	1	.
CG12011-RA	GCTCCTCCCGAATCCATTCTATGTGAACAAGAACCAGGACATTAACCAGTCTCAGGTCGTGAGCCTGCC	69	+	chr3L	1695648	1695717	1695648..1695717	CG12011-RA,	FBgn0035257,	CG12011,	1	.
CG14384-RA	ACAATTGCTAAACTGAACTGCCTATAAATTTCAAGTCTCAAAATGTCCCTCAATTGCCCGGTTCA	65	-	chr3R	8792301	8792366	8792301..8792366	CG14384-RA,	FBgn0038097,	CG14384,	1	.
CR41111-RA	ACGTACGAGAAATACGCCGACCAGACAGAGACAATGACAAGGACGCTTACAGAAGACCACCGGACACCA	69	+	chr3LHet	611159	611228	611159..611228				0	no match
CG13479-RA	CCATATTTCATCAGCACTTGGATCGACAACAGGTCATGCAAGCACAACAGCAGGATCGCCCGAGA	65	-	chr3L	14561102	14561167	14561102..14561167	,CG42758-RA	,FBgn0261816	,CG42758	1	.
CG4784-RA	GTGCCAATAGGTGCCTACTACACCCTGGTTTCTCCCAACACCAAGTACAGTGTTACCACGCCCAC	65	-	chr3L	16359182	16359247	16359182..16359247	CG4784-RA,	FBgn0036619,	Cpr72Ec,	1	.
CG10165-RB	AGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCTGAAAGTAATGCCTCCATCAGAGCTTCGCTT	69	-	chr2L	19527599	19527668	19527599..19527668	CG10165-RA,CG10165-RB,CG10165-RC,CG10165-RD,	FBgn0032801,	CG10165,	1	.
CG4525-RA	ACATACATTGCGGTCACCCTGAGCTAGCTTGGAATGTATTCATCACCAGGGATACGAATGCGGAGGCAT	69	+	chr3R	11602862	11602931	11602862..11602931	CG4525-RA,	FBgn0038358,	CG4525,	1	.
CG40189-RA	AAAAGAAGAGAAAGTGAAGCAGATTTACAAAGGAAGGTTGATCGAAAAGAAAAAGAGAACAGCCAG	66	+	chrU	40256	40322	40256..40322				0	no match
CG5526-RA	TGCCGGAGCGTCATAACTATCTGTGTCCCATGTACAAGACTGCCGAACGTCGAGGAGTATTGTCCACCA	69	+	chr2L	17525272	17525341	17525272..17525341	CG5526-RB,	FBgn0013810,	Dhc36C,	1	.
CG1059-RA	CCGGCACTCGTATGCTCACTATCGTCAAACAAGTGGAATCGAATCCGGAGGTAATGGCTGCTTGTGCCA	69	+	chr3R	479668	479737	479668..479737	CG1059-RA,	FBgn0087013,	Karybeta3,	1	.
CG5507-RA	CATTTGCGTGCACATTCCGACAGGCCATCATCGACTTCGACAAGCTAACTGGGAGGCCGTTTAGC	65	+	chr3R	22736294	22736359	22736294..22736359	CG5507-RA,	FBgn0004359,	T48,	1	.
CG13511-RA	AGTCTGGCCACGTCCCCCACCCGCAAGACCCACATGTGCGCTCTGACCTTGTATATCTGCTGCTG	65	.	.	.	.	.	CG13511-RA,	FBgn0034759,	CG13511,	1	.
CG31975-RA	GGTCCCGCCTCCTTAATTATCACACAAGCAGTCTGACGAAACCGGGCGATAACTACGGAAGCGTTCTCC	69	-	chr2L	140800	140869	140800..140869	CG31976-RB,CG31975-RB,CG31975-RC,	FBgn0051976,FBgn0051975,	CG31976,CG31975,	2	.
CG9215-RA	ACCAGACGGAGCGATGGTCCTATCCCTGAATGACTTTCAAGCGCAGGATTCTATTACTCAGCAGGCAGA	69	-	chrX	15476193	15476262	15476193..15476262	CG9215-RA,	FBgn0030659,	CG9215,	1	.
CG8451-RA	CGATACATGTCTCTTCCATCGCTCAAGAAGGCTCGTGCTTCCATGGCCATTTTTACAATTGGCGTGGCT	69	-	chr2L	8201848	8201917	8201848..8201917	CG8451-RA,	FBgn0031998,	CG8451,	1	.
CG5167-RA	GTCTGGAAGTGATAAGACATTTCTAGTCAAATCATTATAGTCGCATATCTGTGGACTCTGGAATGGCGG	69	+	chr3R	8232383	8232452	8232383..8232452	CG5167-RA,	FBgn0038038,	CG5167,	1	.
CG6721-RB	CCGCGGGCCATTATCACGACCAGGTAAAGGAATACGCATCGATGTGGCAAACACAACCCCCTACC	65	-	chr3L	9833569	9833634	9833569..9833634	CG6721-RA,CG6721-RB,	FBgn0004390,	Gap1,	1	.
CG4965-RA	ACCCATACGAGTTCCTTGGCGGACACATACGGGGAGCGAAGAATTTGTACACACGTGGGCAGATAC	66	-	chr2L	16260613	16260679	16260613..16260679	CG4965-RA,	FBgn0002673,	twe,	1	.
CG14082-RA	GTGGGTCCCTACAGCCTCAGTGAGTCCATGCACAAGCTCACCTTCACGCAATCTTTGGCATTCCC	65	-	chr3L	19100552	19100617	19100552..19100617	CG14082-RA,CG14082-RB,	FBgn0036851,	CG14082,	1	.
CG10728-RA	GGGTGACAATCACATCTATCTCGGGGACTATGACGGCAAAGTTCATACTCTGGACATTCGAGTGCCACG	69	-	chr2L	20064687	20064756	20064687..20064756	CG10728-RA,	FBgn0003978,	vls,	1	.
CG5188-RA	GCCCGAGGAGATCAAGAAACCGGCGTACTACTTCAAGAATATGCCACCGGGTAACACGCTGGGAT	65	+	chr2L	10429045	10429110	10429045..10429110	CG5188-RA,	FBgn0032247,	CG5188,	1	.
CG30411-RA	GGCTCATCTCGAGGTGTCCATCTATGGAGTGGACCTGTAGGCTGTCTGACCCATTGTTGTAAATATCAA	69	+	chr2R	19304039	19304108	19304039..19304108	CG30411-RA,	FBgn0050411,	CG30411,	1	.
CG1941-RA	ACGACCTGGAGAAGATGTTCGCCAAGTACAAGGATCAGTACATACCGAACTCCAAGCAGGACAAGCTGA	69	+	chr2R	3599325	3599394	3599325..3599394	CG1941-RA,	FBgn0033214,	CG1941,	1	.
CG9207-RA	ACCACTATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGAAATAGTGTTCCAGGAGCCCACC	69	-	chr2L	6949660	6949729	6949660..6949729	CG9207-RA,	FBgn0031873,	Gas41,	1	.
CG12797-RA	CCCATAGACAACGACTGGGATTGCACAGCCACTCTTACTTCACACACAAGCACGGTTTGGGGCATTGAC	69	-	chr2R	10741861	10741930	10741861..10741930	CG12797-RA,	FBgn0033972,	Ciao1,	1	.
CG5491-RA	TGCGCGGGCATAAACTTGCATTTATATTGTTATTTACTATATCTACCCGGTATTAAGATGGCCGCAAAT	69	+	chr3R	22689134	22689203	22689134..22689203	CG5491-RA,	FBgn0039459,	CG5491,	1	.
CG12681-RA	GGATTCCTAAGGCCAAGAGAACGCAAAAACAAGTCCAGAACGAAGATCAAGCAAAGCCTCTCGAGATGG	69	+	chrX	4770884	4770953	4770884..4770953	CG12681-RA,CG12681-RB,	FBgn0029730,	CG12681,	1	.
CG8963-RA	GGCAAACAGAAGACCTAGACGACTGTGGAGAACTGTGTTGCATTGGACGGATTCATGAGGGCGTGGTC	68	-	chr2R	12904420	12904488	12904420..12904488	CG8963-RA,CG8963-RB,CG8963-RC,CG8963-RD,	FBgn0034181,	CG8963,	1	.
CG11166-RB	GGCACCCAAAATGGAGAATAGCACCATGCGAATCTCAACCAAGACGAAGGTTTCTACCGGCAGCCGTAG	69	-	chr2R	3287131	3287200	3287131..3287200	CG11166-RC,CG11166-RD,CG11166-RA,CG11166-RB,CG11166-RE,CG11166-RF,CG11166-RG,CG11166-RH,	FBgn0033166,	Eaf,	1	.
CG5953-RB	ATGTGTCCCTCAAACTGCGGACCATGGATCGCACGCAACGAATCATTGCGGAGAAGCTAATCAGC	65	-	chr2L	16510198	16510263	16510198..16510263	CG5953-RA,CG5953-RB,CG5953-RC,	FBgn0032587,	CG5953,	1	.
CG8828-RA	GCGGAGCACCTTTGCGGATATTCCCAACTCCCTGCTTCTGAACGTGGTAATGAAGATCAAAGAGGAGCA	69	-	chr2R	8354713	8354782	8354713..8354782	CG8828-RA,	FBgn0033740,	dgt5,	1	.
CG8601-RA	GGCAATGGATCGCAAGGTTCACATTCTCCCAACAAGAGTGCTCTTAGCAAGGAGCGTGCTGAATTCGGA	69	+	chr3L	7325232	7325301	7325232..7325301	CG42307-RA,CG42307-RB,CG8601-RA,CG8601-RD,	FBgn0259203,FBgn0002909,	CG42307,mus312,	2	.
CG32952-RA	TTCACCATTATCCTGTTTCTGGCTGGACTGGGTCAGCACACAACTGAAAGTGTACTTCCAGACTGCGTT	69	-	chr2L	11591569	11591638	11591569..11591638	CG15841-RA,CG6555-RA,	FBgn0046212,FBgn0032367,	CG15841,CG6555,	2	.
CG12546-RA	GCAACTGGAGAATCAACGTCGACAGATCAACCAGCTGAGCGGATGAAGGTCTTCGGAAAGACTCGGCTT	69	.	.	.	.	.	CG12546-RA,CG14452-RA,	FBgn0037178,FBgn0037180,	CG12546,CG14452,	2	.
CG9267-RA	CGACATGGAACCGCGCATGTATGCCAAACCCGTCGTTTTCTACGTTTTTATAATATGGTCTCTGGTCGA	69	-	chr2L	13444642	13444711	13444642..13444711	CG9267-RA,	FBgn0032524,	CG9267,	1	.
CG13743-RA	ACAAAAGCCATCACCTCTTACTTTCTCTTCGGGCTGAGAGATCGGAACCAAGCTGAAGACCCCACAACT	69	-	chr2R	4932962	4933031	4932962..4933031	CG13743-RA,	FBgn0033368,	CG13743,	1	.
CG1814-RA	AGGCCCGCAAACCAAAGTTCTTTACGGATGAATCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGT	69	+	chr2R	5468387	5468456	5468387..5468456	CG1814-RC,CG1814-RA,CG1814-RB,	FBgn0033426,	CG1814,	1	.
CG8065-RA	TCGGTAGACCTGGGAATTTCCCCAAAGAACGGGAGCAACAAGTTTGTCATGAACGAAACTCCTTCCGGG	69	+	chr3L	10210227	10210296	10210227..10210296				0	no match
CG5026-RB	GAACTTTCCTGTGCGATTCAGAGCGGGAGAGAAACGAACTGAATGTGCACACCAGGACGACGAGC	65	+	chr3L	8963812	8963877	8963812..8963877	CG5026-RA,CG5026-RB,CG5026-RC,	FBgn0035945,	CG5026,	1	.
CG8051-RA	GGCCAAAATCAATCTAAGCAACCGTACCTTCTTCGTTGTGGGCATTTTGGGCATGTGCATTGGCCGC	67	-	chrX	19196028	19196095	19196028..19196095	CG8051-RA,	FBgn0031012,	CG8051,	1	.
CG9258-RA	GGCTGTTCCAAGGCCAATAACTATGGCTACAAGACGAACCAGCCCTGCATATTCTTGAAGCTGAATAAG	69	-	chr2L	6779804	6779873	6779804..6779873	CG9258-RA,	FBgn0015776,	nrv1,	1	.
CG40123-RA	ACGATGGCATCCATTTCAGAGGTTTTGCGATACTCTTCGTCCCCCATTGTTCCTCATGTAGCAATGGAA	69	-	chr3RHet	2127660	2127729	2127660..2127729	CG41624-RB,	FBgn0086917,	spok,	1	.
CG4429-RA	CAGGCTGGCCTCTGTGTCTCTGTGTCAGTGTCCAGTGTCAGTCAGCAAGCAACTTAACAACAAGCAACA	69	+	chrX	16346406	16346475	16346406..16346475	CG4429-RA,CG4429-RB,CG4429-RC,	FBgn0262734,	Rbp2,	1	.
CG7508-RA	GATGCCCAGATAGTCGGTTTTCTAGCGCCATTTTAAGCTCGCAACGAACTGAGGTATAACCGGGC	65	+	chr3R	4103534	4103599	4103534..4103599	CG7508-RA,	FBgn0010433,	ato,	1	.
CG32595-RA	ACGGATGCTTTACCGTTAGGTCGGAGGATTCAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCT	69	-	chrX	14612465	14612534	14612465..14612534	CG32595-RA,	FBgn0052595,	CG32595,	1	.
CG12623-RA	CGATTCCGCCTTTGGACGATTGGTGCGTTATTACGGTTCGGAGACCCTGGATAAATTGCTCTTCCGCGA	69	-	chrX	11204681	11204750	11204681..11204750	CG34143-RC,	FBgn0083979,	Ir10a,	1	.
CG4589-RC	AGATGCTGAGACAACTCTTAAGCGTGAACCTAAGCCGAAGTGATGTGTTGGAGTAGGGGCGGTGGC	66	-	chr2R	20397519	20397585	20397519..20397585	CG4589-RA,CG4589-RB,CG4589-RC,	FBgn0019886,	Letm1,	1	.
CG16752-RA	GCATCATGCTGACGAACTTCTTCCTGGTATTCAGCTATCCGATCAACTTCGGCATTTACTGCGGCATGT	69	+	chrX	5386094	5386163	5386094..5386163	CG16752-RA,	FBgn0029768,	SPR,	1	.
CG30329-RA	TCGGAAAGCAGATCTCATTCTGGTGGTCATTCCGCAGATGATCTTCATGCTGTGCCTCTTCGGCTACCT	69	-	chr2R	14797279	14797348	14797279..14797348	CG30329-RA,	FBgn0028669,	Vha100-3,	1	.
CG12605-RB	ACCCCCTCACAAGAACCGGATACCCAGAGACACACAAACCGGACACCATTCGCCAGATAACTAACACTA	69	-	chr3L	3957804	3957873	3957804..3957873	CG12605-RB,CG12605-RC,CG12605-RA,	FBgn0035481,	CG12605,	1	.
CG16700-RA	TTGGCTTTACTTGGCTTCTTCACTGGCTCCTACGAAAGCCTAAAGCAAATTGTCAAGCATTTCGGGGAG	69	+	chrX	16991677	16991746	16991677..16991746	CG16700-RA,	FBgn0030816,	CG16700,	1	.
CG1824-RA	GCAAGGATAGTGACGATGTTAGGCAAATTGAATGATTCCCTATACACTTAATTTAATATTCTTATAATG	69	-	chrX	12486673	12486742	12486673..12486742	CG1824-RA,	FBgn0030403,	CG1824,	1	.
CG1380-RB	CTTGTCCCATGTACGTGACTGAGATAGCCCAGGTCCAGTACCGCGGAACCATGGGATGCTTCTTC	65	-	chr2R	5974045	5974110	5974045..5974110	CG1380-RA,	FBgn0028560,	sut4,	1	.
CG13360-RA	CTTTCTGCCGATGGTGACCATGAAGAAGGAGGACTCGTACGACATCAGCATAGAGGCGCTGTCGG	65	-	chrX	682262	682327	682262..682327	CG13360-RA,	FBgn0025620,	CG13360,	1	.
CR32863-RA	GAAATGAAACACGCGCTTTTGTCGACCCAGGAGCCAGTTAGGTCTAAGCTGTTTGTCATGGTGACGACG	69	-	chr3R	3298649	3298718	3298649..3298718	CR32863-RA,	FBgn0043853,	snoRNA:MeU5-C46,	1	.
CG11281-RA	CAGCAGGTCAACGTCTTCCTTTGGCTACGGTTTTCATGTCCGGTCGCATTTGGTTGGATACGGCACTTT	69	+	chr3L	13169524	13169593	13169524..13169593	CG11281-RA,	FBgn0086916,	snky,	1	.
CG16713-RA	CCCCATTCCCTAAACGGAGATGGCAGAATATCCTGTGAGGCCTATATACCCAGTTGGTCCTACGACGCC	69	-	chr2L	3695151	3695220	3695151..3695220	CG16713-RA,	FBgn0031560,	CG16713,	1	.
CG8192-RA	TGCAGTGGAGTGAGCAGTAAACAGTCTTGTCGTTCCCTCGGATCCACCTCTCGTGTATATTCCCCGTCT	69	-	chr2R	11431979	11432048	11431979..11432048	CG8192-RA,	FBgn0034030,	CG8192,	1	.
CG18777-RA	TGCGATCGGATAGCAATGTTGGAATCGATAACTACTCATATGCAGTTGAAACCAGCGACGGTACCTCGA	69	.	.	.	.	.	CG34270-RA,CG18777-RA,	FBgn0086900,FBgn0042118,	Cpr65Ax1,Cpr65Ax2,	2	.
CG5541-RA	ACTCGCAATGTTCGTCAGTTGTAAGTGGCCCATGTATATAGTCGCATGTAGGCTGGGATCTTGCCCAAA	69	+	chrX	14945392	14945461	14945392..14945461	CG5541-RA,CG5541-RB,	FBgn0030603,	CG5541,	1	.
CG12079-RA	AGCCAAGAAGTAATCCGAAGTCGGTTTGTTAAATGGTAATTAGATCAATAAAACGTGATCACTATGAGA	69	-	chr3L	3158500	3158569	3158500..3158569	CG12079-RA,	FBgn0035404,	CG12079,	1	.
CG12141-RB	TCGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTGGTGATATCATCGGCGTTGTCGGACAT	69	-	chrX	9501847	9501916	9501847..9501916	CG12141-RA,CG12141-RB,CG12141-RC,	FBgn0027084,	Aats-lys,	1	.
CR32660-RA	ACAAATCGACTTAACACTACATGCTTATATGTATACACTTGTACACGAATCTACAAATATAATATTGTT	69	.	.	.	.	.	CR32660-RA,CR43157-RA,	FBgn0052660,FBgn0262687,	CR32660,CR43157,	2	.
CG9488-RA	CGAGTTTGAGACAGTTCGGAATTTAAGTGCTGTTATCATACACACCAACAACATGTTTTCCAAAGATGT	69	+	chr2L	6291305	6291374	6291305..6291374	CG33531-RA,CG33531-RB,	FBgn0053531,	Ddr,	1	.
CG3967-RA	TGTGGTGAAGTCGAAGTCACAAACCAGAAGGCACGCAATATTTGCTAACATCTTTTGTACGTGTGGCAT	69	-	chr3L	9407284	9407353	9407284..9407353	CG3967-RC,CG3967-RD,CG3967-RE,CG3967-RA,	FBgn0035989,	CG3967,	1	.
CG1309-RA	ATCACCTACGCCTCTGACGAGGGCAAGTCATTCCCCATGAACATTGGAGCAGATTACTCGGAGGA	65	+	chr3L	4261212	4261277	4261212..4261277	CG1309-RA,	FBgn0035519,	CG1309,	1	.
CG9396-RA	CCTGGTTGGAGCTGTTGTGCCTCAGTTTGTTCAGGAGCACTACTTCCCAACTGGTTTATCGCAGTCCC	68	-	chr3R	5397273	5397341	5397273..5397341	CG9396-RA,	FBgn0037714,	CG9396,	1	.
CG13792-RA	GAGAAGACTCCGCTTCTGGACAGTGTGGAAATGTCCCCGATGAGTCCAACCGATCCAGAGGAACC	65	-	chr2L	7643545	7643610	7643545..7643610	CG13792-RA,	FBgn0031927,	CG13792,	1	.
CG5330-RA	AGTGCGCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGCCCACCAGAGG	65	-	chr2R	19793168	19793233	19793168..19793233	CG5330-RA,CG5330-RB,CG5330-RC,	FBgn0015268,	Nap1,	1	.
CG4969-RA	GATGCAGTGACAACGTTAACTTTGGCCTTCGTCACTCGCGCGTTTTCCTTGACGCCAAGCAAAGG	65	+	chr2L	7351572	7351637	7351572..7351637	CG4969-RB,	FBgn0031902,	Wnt6,	1	.
CG7427-RA	AGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTCAAAACTGGTGCTGATCATAGC	67	+	chr3L	15557596	15557663	15557596..15557663	CG7427-RA,CG7427-RB,CG7427-RC,CG7427-RD,	FBgn0036510,	CG7427,	1	.
CG6544-RB	ACTCTCAAAGCATCCAAATCTAAAAATCTCAACATGGTTTACGAAAGTGGATTTACGACCCGCAG	65	-	chr3R	6602941	6603006	6602941..6603006	CG6544-RB,CG6544-RA,CG6544-RC,CG6544-RD,CG6544-RE,CG6544-RF,CG6544-RG,	FBgn0020439,	fau,	1	.
CG13759-RA	TCACATTTGGAACAATAATCTCATTTATTTTCTACATATACATACATTGCATAATCGTTATTGGAATGT	69	+	chrX	2477776	2477845	2477776..2477845	CG13759-RA,CG13759-RB,CG13759-RC,CG13759-RD,	FBgn0040376,	CG13759,	1	.
CG3021-RA	ACCATTGGTGGACTGTCAGCTGAGCATCTCTCCCAGTAACACTTTTCTTGTCGAGTTGGACGCTCCTTT	69	+	chrX	921972	922041	921972..922041	CG3021-RA,	FBgn0040337,	CG3021,	1	.
CG5576-RA	GGATGTGGTGCATTCCGCCAATATTCCGGGCACTCTCAGTAACGTCCAGACAAACAACACCATGAACGT	69	-	chr2R	14298613	14298682	14298613..14298682	CG5576-RA,	FBgn0013983,	imd,	1	.
CG7084-RB	ATCAAGTTCCTCAACGCGCTCACCTTTTTCACGGTGAACCTGCAGTGCCTGGAGATCTATCCCAC	65	+	chr3R	18128608	18128673	18128608..18128673	CG7084-RB,CG7084-RC,CG7084-RD,	FBgn0038938,	CG7084,	1	.
CG12835-RA	GATATGACGATCTGAGGAACCTGAACCGCTGCCGCAACAGGAACGCCGTTTGGCTAAATCCCAAG	65	+	chr2R	2995197	2995262	2995197..2995262	CG12835-RA,	FBgn0033142,	CG12835,	1	.
CG32027-RA	TGAAAACGGGAACTGCTGTGCCATTTAGACCAAACTGGCAACCTGTTACATATTTCAGCCACGTTAGCC	69	+	chr3L	18835461	18835530	18835461..18835530	CR32027-RB,	FBgn0052027,	CR32027,	1	.
CG40138-RA	TCCCTTTCTGCACCCTACGTCCGGAGAAACATCAGCCGACTACGAGAATATTCACCGCCTTAAATCGCA	69	.	.	.	.	.				0	no match
CG32715-RA	TGGGCTTAAAGAGGTCAAGAGGTCACAGAACATGAGGAGCCGTCAGGAAATCTAATCGTAGCACAGCCA	69	-	chrX	8139984	8140053	8139984..8140053				0	no match
CG5441-RA	ATACCTCCGATGGGGATTCCCTCTCCTGTCTAAGTCCCGGCTATGGAAGTCTACTCACTGGCAGC	65	+	chr3R	22274129	22274194	22274129..22274194	CG5441-RA,	FBgn0263118,	tx,	1	.
CG11319-RA	GCGAACGAAATGTTTTTCTGTAAATTGCATTCAATGTGATTTATCATGAACACACCCACGACACTCACA	69	-	chr2L	6572347	6572416	6572347..6572416	CG11319-RA,	FBgn0031835,	CG11319,	1	.
CG8097-RA	TATGGCTACCTCCTTACCTTTCCGGAGCTAATGGAGTCCATAATGGATCAATTGGACCAGGGTCATTGC	69	+	chrX	15478753	15478822	15478753..15478822	CG8097-RA,	FBgn0030660,	CG8097,	1	.
CG7415-RB	CTTCCTGGAGAAACTTACGACACCAAGTTCGGAGCAATTGGTTCCTCGTACGAGGAATGCCGCGC	65	+	chr3R	4172350	4172415	4172350..4172415	CG7415-RB,CG7415-RC,	FBgn0037580,	DppIII,	1	.
CG13867-RA	TGGCCGACTTTCCTGGACAACTTTGCCATTATCTCAAGTCACTTGACGGGATTGACGAAAATCTTGGCA	69	-	chr2R	16214035	16214104	16214035..16214104	CG13867-RA,	FBgn0034503,	MED8,	1	.
CG32816-RA	GCCCGCCTGTATCGGAAACAACTCCTTTATCCTTACCCCTTCCGCTCTTGACAACTCAACAGCAACAGC	69	-	chrX	211565	211634	211565..211634	CG32816-RB,CG32816-RA,CG32816-RC,CG32816-RD,	FBgn0052816,	CG32816,	1	.
CG12683-RA	TAATGCCATTTGCCAGTTGCAAGAGTACTCAGCTACTAAGTCCCTCGCCCCTTTCTTGCCGCAGC	65	-	chrX	4645559	4645624	4645559..4645624				0	no match
CG18657-RA	GTCAGCCCAGTTTAAGCATTTGTGAACAATTTACGTACTAGGGCCGTCTCGAAATCAAACAGAGCGCCA	69	-	chrX	14498126	14498195	14498126..14498195	CG18657-RA,CG18657-RB,	FBgn0015773,	NetA,	1	.
CG1271-RB	GAAGAGCTCCATGAACTGGTTCTCGTATGCCCTGTTCCTTCTCACCCGCCAGTCACGATTCCTCG	65	+	chr3L	3053403	3053468	3053403..3053468	CG1271-RB,CG1271-RA,CG1271-RD,CG1271-RC,	FBgn0035392,	CG1271,	1	.
CG13699-RA	TGCTGCCCAACGAAAACTGAAATTTCCTGTAGATCGCGATGAACGTTCTGAAAGTGTTCGGCGTGGCAA	69	-	chr3L	18149163	18149232	18149163..18149232	CG13699-RA,	FBgn0036781,	CG13699,	1	.
CG8505-RA	AACGGATGTGAGGGACAACACGACACGAGAACCACATGACAACACCATGATACTGATAGCCCAGTCTGA	69	+	chr2R	8292178	8292247	8292178..8292247	CG8505-RA,	FBgn0033728,	Cpr49Ae,	1	.
CG6846-RA	TTTTTACCGTAACGCTTAGTGTAAAAAACAAAACATCTGAAAAAAATCGCGTGTGAAAACGGCGC	65	+	chr3L	18892919	18892984	18892919..18892984	CG6846-RA,	FBgn0036825,	RpL26,	1	.
CG10071-RB	GCGTTTTTCCAATTGGCTATTTTTATTTATAATATCTTCAATTGCAGCTAGGAATTCCAGTGTGCGAAA	69	+	chr2R	17181307	17181376	17181307..17181376	CG10071-RB,	FBgn0016726,	RpL29,	1	.
CG10118-RB	CTGGGAAAGCAAAGTTCAGATACATCCGCACTTAGTAGGCAAAGTACCACACAAAAACCGATTGTATAC	69	-	chr3L	6707544	6707613	6707544..6707613	CG10118-RA,CG10118-RB,	FBgn0005626,	ple,	1	.
CG11155-RA	GCCAACTTAGCTGCATTTCTAACAGTTGAACGGATGATTTCCCCCATTGAAAGCGCTTCTGATTTGGCA	69	+	chr4	1154569	1154638	1154569..1154638	CG11155-RA,CG11155-RB,	FBgn0039927,	CG11155,	1	.
CG31873-RA	GCGAGCCGGTTTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAATCACATTGGTCATGCCA	69	+	chr2L	10270461	10270530	10270461..10270530	CG31873-RA,	FBgn0260750,	CG31873,	1	.
CG9359-RA	GCTGTGATTTCTGGGTTACGAATAAATGTTGATTTATAAGCAGACAAGATTACCAACAGCATTTTGCAT	69	-	chr3R	5234080	5234149	5234080..5234149				0	no match
CG12491-RA	TCGGCTTAACCCGATCGAACAATGAAATGGTCCAAATTGAAAAATAAATGCATACACAAAAGCAACAAT	69	.	.	.	.	.	CG34105-RA,CG12491-RA,	FBgn0083941,FBgn0034900,	CG34105,CG12491,	2	.
CG5485-RA	TCCATGGGCCTAACGTTCGCTAAGAAGCACGGATATGAGGTCAGACCAAATCAGGAGCTGTTCGCC	66	-	chr3L	17893437	17893503	17893437..17893503	CG5485-RA,	FBgn0036770,	Prestin,	1	.
CG6098-RA	GGATCTACGGATCGACCTGTTGGATGTGTGGGGCAATTGCTTCAAGGAATTCAATGCAGATGCCGCG	67	+	chr2L	10518364	10518431	10518364..10518431	CG6098-RA,	FBgn0010398,	Lrr47,	1	.
CG6682-RA	ACGCAAGAATAACAACCCTAACCGTACATCATAATCCCCCAAACCAATTCCAGAACCCATCCCAACTTT	69	-	chr2L	7498561	7498630	7498561..7498630	CG34374-RD,CG34374-RE,CG34374-RF,CG34374-RG,	FBgn0085403,	Rapgap1,	1	.
CG6671-RC	AAAATGCAAGCAAGGCCAGATAAGTTAAGTGGGCAATGAATAACGAGAACTGCAATTTCAACAAGGGAC	69	-	chr2R	9834439	9834508	9834439..9834508	CG6671-RC,CG6671-RB,CG6671-RD,	FBgn0262739,	AGO1,	1	.
CG1822-RC	TTCTACCGGTTTCCACCAAACTCCAAACCTTCCGAGCATAACAACCTACCACATCCTGATCGTTCCCCT	69	+	chrX	11588011	11588080	11588011..11588080	CG1822-RB,CG1822-RC,	FBgn0014133,	bif,	1	.
CG16742-RA	GGCCCAACAGCTTCGACTAGAGATAGCCCAGAAGTTGAACACTCTGAGCGAAGTTCCATTAAGGCACCC	69	+	chr2R	16514740	16514809	16514740..16514809	CG16742-RA,	FBgn0034529,	CG16742,	1	.
CG12749-RA	GGCAGGCAATCAGTAGCATGTGTGTGTCAGACCAGGCAGACAAGATCAGAACCAAGAAATCAAGATGCA	69	-	chr3R	9483855	9483924	9483855..9483924	CG12749-RA,CG12749-RB,CG12749-RC,	FBgn0004237,	Hrb87F,	1	.
CG32589-RA	GGCCTTGGGCACTTTGAACACTCGATCGGCGATTTCTGCAATTGTAATGGGATTTTCGATAGCGATTGC	69	+	chrX	15020500	15020569	15020500..15020569				0	no match
CG5205-RA	TTCAGGCCCGATGGTTCGACGGTAGTGAGTTCCTAACGTTGCCAGGAGTGAACGAGGACAATCTC	65	+	chr3R	11317972	11318037	11317972..11318037	CG5205-RA,	FBgn0038344,	CG5205,	1	.
CG9993-RA	TGAGCGCGGTCAAAAGCAGTCTCAAGTTCAAGACGGAGATCATTCTGCTCACTGGAACTCTGCCTGGAG	69	.	.	.	.	.	CG9993-RA,	FBgn0034553,	CG9993,	1	.
CG12390-RA	CGCGGTCGCGTTCACAACATTAATGGTCGTATTCTTAAGGATGATGCTACGGGAGAGGTTGACCCTGGA	69	-	chr2R	7178903	7178972	7178903..7178972	CG12390-RA,	FBgn0015582,	dare,	1	.
CG4476-RB	TCTGGTGGGATTGATTTACATCACTCCCGGAGGTCAACATATCATCACGCTTATGGACTTTCACGGCGT	69	+	chr3L	9207434	9207503	9207434..9207503	CG4476-RB,	FBgn0035969,	CG4476,	1	.
CG8165-RA	AGATGTTTGTGCCACCAGACTTAGGACCCAAAATGTACAACGCATATGGCTCAGCATTGCACCCCGACA	69	+	chr3R	5345836	5345905	5345836..5345905	CG8165-RA,	FBgn0037703,	JHDM2,	1	.
CR31400-RC	ACTGGTGTATCGACTTCTCTGCTCCACTATGGGTGAAGGATACCCTACCGAAAAGGCCTTCTGTCGCTT	69	+	chr3R	17123772	17123841	17123772..17123841	CR31400-RA,CR31400-RB,CR31400-RC,	FBgn0001234,	Hsromega,	1	.
CG8865-RA	AGGTCCTACCCGATAAGGAACTGGTGATGCCGAAGAATGCGAATGTCTACTACGCGGTTAACACGAACT	69	-	chr3L	13900979	13901048	13900979..13901048	CG8865-RA,CG8865-RB,CG8865-RD,CG8865-RC,	FBgn0026376,	Rgl,	1	.
CG5462-RD	TACCCGTATACCCCGTAACATGTTAACGCTGAAACGTGAAGTTTATAGAGTGACAACTACCACGAACCC	69	+	chr3R	22420757	22420826	22420757..22420826	CG43398-RA,CG43398-RB,CG43398-RD,	FBgn0263289,	scrib,	1	.
CG12552-RA	ATATCATTGCTCCGTTTGATTGTGTCCAAAAGCATCGTTCACTCAGGAATAGGGCACCGTCGCTG	65	-	chr2RHet	51848	51913	51848..51913				0	no match
CG30497-RA	TATATCCACAACAAATGAAAGACAAATGGTCCACAGAGCAAAATGAGTCGAAGATGAGTGGATGTGGAT	69	-	chr2R	3625657	3625726	3625657..3625726	CG30497-RA,CG30497-RB,CG30497-RC,	FBgn0050497,	CG30497,	1	.
CG5118-RA	CGCTCGCATGATGACCGACCACCTCTACGAGAACTCAAACACAGCTCTTCATCTGGCGGTGATAAACCA	69	-	chr2L	1171400	1171469	1171400..1171469	CG5118-RA,	FBgn0031317,	CG5118,	1	.
CG8441-RA	AGCGCAGAGGACACAAATGCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGAT	69	-	chr2R	12072695	12072764	12072695..12072764	CG8441-RA,CG8441-RB,	FBgn0034086,	CG8441,	1	.
CG14477-RA	TATTATACCGATGCCACGCCCACCCTGGTGCTGAGCAGCGACTATAACTCCAACTGCATCCCCAT	65	+	chr2R	13261990	13262055	13261990..13262055	CG33197-RF,CG33197-RD,CG33197-RI,CG33197-RL,	FBgn0261642,	mbl,	1	.
CG13800-RA	ATTTCAAGTGAGGGAGCATTACGTATCCGAGGTTTCCATTAGTGCTTCGGAATCAACGGATGAGGAGCA	69	+	chr3L	2407137	2407206	2407137..2407206	CG13800-RA,CG13800-RB,CG13800-RC,	FBgn0035338,	CG13800,	1	.
CG5106-RA	CGATGTAGGCATGGAATGGACTTCGATTGATGGGACAATGGAATTTGATTAATATGTAACATTTTAGTT	69	+	chr3R	7052091	7052160	7052091..7052160	CG5106-RA,	FBgn0037879,	scpr-C,	1	.
CG18284-RA	CAGAGTCAAGGGACGTCACAATCACAAAGTCAAGCTCAAATTCAATCACAGCCTGAACCAAGGTCATGT	69	+	chr2L	10644341	10644410	10644341..10644410	CG18284-RB,	FBgn0043825,	CG18284,	1	.
CG32763-RA	AATGAACTCAGTATCGAGTGAATGTCAGTGTGAATGTGGTGAATATGGTGAATGTGTGTTCGCTTGTGT	69	+	chrX	5519639	5519708	5519639..5519708				0	no match
CG7707-RA	GCTGCGGGAAACTTCGGAGGAACTGAAGCAAATCAGCACGGCGTACATATTGCATCATCACAAGGCC	67	+	chr3L	17236729	17236796	17236729..17236796	CG7707-RA,	FBgn0036703,	CG7707,	1	.
CG1885-RA	GGCGGAAAACTCGACAAAGGAAAATTCAGCACACAGTTTGCGTCCGATCAAAGTGAGAAACGTGAGCCA	69	-	chrX	8794101	8794170	8794101..8794170	CG1885-RA,	FBgn0030066,	CG1885,	1	.
CG18787-RA	CGAGGAGGTGCGGTTCATGTGTTACGAGGCCAAACGACAAAACCAATTCGAACAGTTCAGCCAACAGTT	69	.	.	.	.	.	CG18787-RA,CG18789-RA,	FBgn0042125,FBgn0042127,	CG18787,CG18789,	2	.
CG12051-RA	GGCGTGGTCGTTCCTCATCGAACACACCCATTGCAGACAAAGGATGGGAGTCAAAAGTATTGGGCATGA	69	-	chr2R	1901690	1901759	1901690..1901759	CG12051-RA,	FBgn0000043,	Act42A,	1	.
CG32721-RA	GGCAGGCATCAATCAGTTGTCGCTGGCTATTATATATATTATATATTACTGTTACGCTAGTGTAACGAT	69	-	chrX	7620060	7620129	7620060..7620129	CG32721-RA,	FBgn0027553,	NELF-B,	1	.
CG8176-RB	GCTCGTGTCCCTTCCAACTTGTCAGCTACTGGAAGTGTGAGTCCAGCTACACGGCCCTTAAAGTGGAC	68	+	chr3R	5351685	5351753	5351685..5351753	CG8176-RB,CG8176-RA,CG8176-RC,CG8176-RD,	FBgn0037702,	CG8176,	1	.
CG3936-RA	AGGGTTCCGAGGCCATCTACATTTGACCGTGATCTGGATGATTTGGTATGTTGAATATCGCGCAAGGAT	69	+	chrX	3064988	3065057	3064988..3065057	CG3936-RA,CG3936-RB,	FBgn0004647,	N,	1	.
CG12737-RA	AGGGCGACATTGCGCTGATAAAACCGGAATTTGTCGATGAGCACCCGATCATCTATTGGAACTTGCTCT	69	+	chrX	8493894	8493963	8493894..8493963	CG12737-RC,CG12737-RA,CG12737-RB,	FBgn0025864,	Crag,	1	.
CG16885-RB	TGTTGCGGGTTGGTTGAGACATACAAGCCCATCTTGATCGCAAAGTGTTGAGGAGCTAACCTAGTGCAA	69	-	chr2L	13934610	13934679	13934610..13934679	CG16885-RA,	FBgn0032538,	CG16885,	1	.
CG1681-RA	AGCACACGCTCAACGAGTTCGAACAGCTATTCCTCAACTCCCGCAAGTTCATGATGGGCGACAACATTT	69	+	chrX	13302713	13302782	13302713..13302782	CG1681-RA,	FBgn0030484,	CG1681,	1	.
CG3280-RA	GCCGGAACAAGCTCCTCTGGAACTGGCAATTTTCCCATAAAGGAGACCCATCCAAAGAGCCGCTTCAAA	69	+	chr3L	9605593	9605662	9605593..9605662	CG3280-RC,CG3280-RD,	FBgn0036017,	CG3280,	1	.
CG1058-RA	CGGCTCCCAGATGTCCCGCTTGTCCATTTACTTCAAGCAGAGTCAGTTCATCACTTCAAAGCGGTCGGA	69	+	chr3R	473646	473715	473646..473715	CG1058-RA,CG1058-RB,	FBgn0022981,	rpk,	1	.
CG9504-RA	TGGGTGTACCACGGATGAAACAGCCATTGATAGCGGGTGCTACGTTCGGTTACACTCATCATGTCCCG	68	-	chrX	14811985	14812053	14811985..14812053	CG9504-RA,	FBgn0030597,	Eo,	1	.
CG1440-RA	ATCCCATGGGTACGCTAGCACAGTAGGTCCAGGTTGCCATCAAGACACACCCAACACACCTAACA	65	+	chrX	8334767	8334832	8334767..8334832	CG1440-RA,CG1440-RB,CG1440-RC,	FBgn0030038,	CG1440,	1	.
CG9497-RA	GGGCGAGAACTACTGCAGTCAAATCTACAGAGTGAAGGTTTCGTTTAAGCGCCCCGATCATCCGGAGCA	69	-	chr2L	6347939	6348008	6347939..6348008	CG9497-RA,	FBgn0031800,	CG9497,	1	.
CG16868-RA	GGCACATGGAAACTGCCGAATCGTAGTCCACAATAGCGTTGTTAAGTTTTAGAGCGTAAGATGTCCGCT	69	-	chr2R	16169611	16169680	16169611..16169680	CG16868-RA,	FBgn0034498,	CG16868,	1	.
CG6611-RC	CCCATCTGCAGCTGTAATTAGTTAGGATCTGGTGCTTAACCATTGTAATTGTGCATTTCTTACCT	65	-	chr3L	10186206	10186271	10186206..10186271				0	no match
CG4364-RA	CGCAATCTGTTCCGGAAACTCATCCGCGAGAAGCAGACTAAGGAAAAGGAGGAATGGCTGTTGCGCAAG	69	-	chr2L	9709137	9709206	9709137..9709206	CG4364-RA,	FBgn0032138,	CG4364,	1	.
CG31991-RB	GGTCCCCGAATGGGCAATATAATCGTGTGGGCTTCCATTATTCTTGGTCAGCCTCTGTGCATAATGGCC	69	+	chr2L	16826581	16826650	16826581..16826650	CG31991-RD,CG31991-RA,CG31991-RB,CG31991-RC,	FBgn0004797,	mdy,	1	.
CG32850-RA	GTGCCTATTATATTCAACGTGTGAACACACAAACATAACTAAAATGTACTTGTAGTACTTGGACGCATT	69	.	.	.	.	.	CG32850-RA,	FBgn0052850,	CG32850,	1	.
CG6585-RA	GGTTCAGGCCATTCATTTAGATCCCGCATTGTATCCGGCACCCAACCAGTTTCGTCCAGAACGCTTTCT	69	+	chrX	18605210	18605340	18605210..18605228,18605289..18605340	CG6585-RA,	FBgn0030949,	Cyp308a1,	1	.
CG12003-RA	AAACAGTCGAAATTATAGTTCTTAGAGGGAGATTACCATCAAAATTGCCAATCGAAGCCAGCATTGTGG	69	+	chr3L	1567554	1567623	1567554..1567623	CG12003-RA,	FBgn0035234,	CG12003,	1	.
CG13689-RA	TTCCCAAGGAAACAGGAACGTTTCACTGCCTGGACTACGTGTACGAGAGTTCTTCCGAGGATGAGGAGA	69	+	chr2L	603163	603232	603163..603232	CG13689-RA,	FBgn0031270,	CG13689,	1	.
CG6879-RA	CAGCCCATTTTCCGGATCAAGTTCCGCCCAAAGACCACATCAACAGACATTCTACGGACGGAGCC	65	+	chr3R	20609313	20609378	20609313..20609378	CG42331-RB,CG42331-RC,CG42331-RD,	FBgn0259233,	CG42331,	1	.
CG32645-RB	ATCTGCACCCTCGACTCTTTCGGATCGTTATCTATACATGTACTTATTACTCTGCACCACATTTTTCAC	69	+	chrX	13047097	13047166	13047097..13047166	CG32645-RB,	FBgn0052645,	CG32645,	1	.
CG5590-RA	CGCTCAAGTCCAAGCTGTAGGGTGCGATTGAGTGGCTGAGTTTTCTATTGTTTACAAGCGTTTCAGTTT	69	+	chr3R	23504624	23504693	23504624..23504693	CG5590-RA,	FBgn0039537,	CG5590,	1	.
CG14190-RA	ATGAGAGCATGTTTCCACCAATCATTCTGCCCGCTATCCTCAAGCGTTCATCCCAGGAGAGGCTG	65	+	chrX	18961268	18961333	18961268..18961333	CG14190-RA,	FBgn0030979,	CG14190,	1	.
CG9450-RA	CCTGCTCCAGTCGTTCATCGACACTCGCTTCTCTGAAACATTCCAGGTAGAGATTCTGGCCACCAAGGG	69	+	chr2R	17079489	17079558	17079489..17079558	CG9450-RA,	FBgn0003891,	tud,	1	.
CG8844-RB	GGAAATTATTTACTAACAGCTCTTCCGCTTACGCCAGGTGGTAGGAGAGCCAGAAAATGCCGGAACCG	68	+	chr2L	3466278	3466346	3466278..3466346	CG8844-RB,	FBgn0021967,	Pdsw,	1	.
CG8108-RA	GCCAGCCCAAGAATCTTCATCAGGCCTCCGAACACCACAAGACCATTAAGAAGTTCTTAATGCCCTATT	69	+	chr3L	9862279	9862348	9862279..9862348	CG8108-RB,CG8108-RA,	FBgn0027567,	CG8108,	1	.
CG30122-RB	ATGACAGTGACGAAGCAATTGAATGAAACGCGGTCTTTACTCTGGCACTACGTATCTAGGCAGTACAAC	69	-	chr2R	14519947	14520016	14519947..14520016	CG30122-RB,CG30122-RC,CG30122-RD,CG30122-RE,	FBgn0050122,	CG30122,	1	.
CG10145-RA	ACAGAACCTCAGGGCGTCATCTATCGGATCACCTCGCGTTATCCTGGACATCCTGCGGGTAGCTTTTAT	69	-	chr2R	10571104	10571173	10571104..10571173	CG10145-RA,	FBgn0020269,	mspo,	1	.
CG3903-RC	TCCCTCAAGTCAGGGATCTCGCTCAAGGAAACCAATGGCCATTTGGTGAAGCAATCTGAAAGGGCA	66	-	chr2L	15757389	15757455	15757389..15757455	CG3903-RA,CG3903-RB,CG3903-RC,CG3903-RD,CG3903-RE,	FBgn0001987,	Gli,	1	.
CG32037-RA	TCCCATTCCCATGTTTGCAAGCCATTCGTATCCAGCCCATGCACCGTGAAAAAATGTGGTCACAATTGA	69	-	chr3L	9483030	9483099	9483030..9483099	CG32037-RA,	FBgn0052037,	CG32037,	1	.
CG6932-RA	GCGACAATCCCACTGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCCCCAT	67	+	chr3R	18407095	18407162	18407095..18407162	CG6932-RA,	FBgn0028837,	CSN6,	1	.
CG11325-RA	ACTTTCAGTGCGTCATCTTCAACTCGTTCAGGAGCGACTTTGATGAGAAGCTGTATCAGGCGGCCTCCA	69	-	chr2L	6713116	6713185	6713116..6713185	CG11325-RA,CG11325-RB,CG11325-RC,	FBgn0025595,	GRHR,	1	.
CG10675-RA	AGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGCGACTACATTCTTTTGGAGGATCTGCGGA	69	-	chr3R	21156404	21156473	21156404..21156473	CG10675-RA,	FBgn0039328,	CHKov2,	1	.
CG5154-RA	GGCGTGTTTAAGAGGGTATGGGGATCGTTACGTGGCTGGTTTAGTTCCTCATCGGTGGACGAGAAGTCC	69	+	chr2R	14281781	14281850	14281781..14281850	CG5154-RA,	FBgn0064237,	Idgf5,	1	.
CG10107-RB	CCCATCAATGAGCAGTCGCATTGGTTCCTCGCCATCATTTGCTACCCGAACTTAAAAGGACCCGTCACG	69	-	chr3L	6738982	6739051	6738982..6739051	CG10107-RA,CG10107-RB,CG10107-RC,	FBgn0035713,	CG10107,	1	.
CG30161-RA	CTGAGCAATCCAGAAATTAGGTATAGAGACTGGGATTCCAAGCCTGCACAAGAAATCCTTCCGAAGGCC	69	-	chr2R	20551108	20551177	20551108..20551177	CG30161-RA,	FBgn0050161,	CG30161,	1	.
CG9307-RA	GCGGCAGGAAGAACGGCCTAACGCAAATCCTGTACGACAACATGAAGAACTATCGGGTTCCGGAACCTA	69	+	chr3R	9595198	9595267	9595198..9595267	CG9307-RA,	FBgn0038180,	Cht5,	1	.
CG8884-RB	TCGTTGTCTTCCTTCCTTCGATCCAATTATAATTTTGCCTCTTCCTTTGACACATTTCTCCACATGTTT	69	+	chr3R	11783045	11783114	11783045..11783114	CG8884-RB,CG8884-RF,	FBgn0013334,	Sap47,	1	.
CG10077-RA	GCCCTGCGGTTCGATAGAGGCTACCAGATTGTAGACCAGCTCTACTGTAATTTCCTTTCCCCACACGAA	69	-	chr3L	6943358	6943427	6943358..6943427	CG10077-RA,	FBgn0035720,	CG10077,	1	.
CG12672-RA	CATTTGCTGCAATTCGTTTGATTTTCTTGCTTGTAACGATTTGAATAAAACGATTAAGAATACCTGCAA	69	-	chrX	17899945	17900014	17899945..17900014	CG12672-RA,	FBgn0030886,	CG12672,	1	.
CG30115-RC	ACGCAGGATCAGTATTACAGCCCAGATCACGAGACGGAACTACTGTCCCCAGCAGAGAAGTCAAAGCGA	69	-	chr2R	14443013	14443082	14443013..14443082	CG30115-RE,	FBgn0050115,	CG30115,	1	.
CG7260-RA	GGATGCCAAAGAGCGACCGGATACACTGTATCCACACGATACCCACTACGGCTGGCTCATTCCAC	65	+	chr3L	11927021	11927086	11927021..11927086	CG7260-RA,	FBgn0011723,	byn,	1	.
CG5481-RA	ACGGTGGAGTGGAGAACTTTGAGTAGCCTGGTTAGGAAGGGTATTTGGAGGGGAATGTGCTGAAGGCAA	69	-	chr2L	1381400	1381469	1381400..1381469	CG5481-RA,	FBgn0002543,	lea,	1	.
CG11218-RA	CCAAAGGGTTTCCAACAACATCTCTACCGAAAATGAAGTTCCTGATTGTCCTCTCCGTCATTTTGGCCA	69	-	chr2R	15591218	15591287	15591218..15591287	CG11218-RA,	FBgn0034470,	Obp56d,	1	.
CG8546-RA	TCTGGGACAAGTGGAACAACAATCCGGTTATTGTCAGTTTCGCCGAGAAATCCACTCCGGTGTGGCAAA	69	+	chr3L	7449637	7449706	7449637..7449706	CG8546-RB,	FBgn0035785,	CG8546,	1	.
CG8495-RC	TGCCCCCGGTTGAGTACGGAAATACGTGTTTAGCATCTAGAACAGTTTCCTTAATTAAGGGTGGCCAAA	69	+	chr3R	5604121	5604190	5604121..5604190	CR33625-RA,	FBgn0086663,	snoRNA:Psi18S-1275,	1	.
CG9999-RA	GGCCGTCTCCTTGTACCAGGCCACCTTTGACTATGCCATCAAGACAAAGCAGGAGACACGTGTACTCAA	69	+	chr2L	19447000	19447069	19447000..19447069	CG9999-RA,	FBgn0003346,	RanGap,	1	.
CG13997-RA	TTTGGAAGCCTCGACCTGTGGAGGAAGTACAGGGTGCTTAAGGAGCCTGCCATCGAGATCATCAG	65	-	chr2L	5958461	5958526	5958461..5958526	CG13997-RA,	FBgn0086266,	Vm26Ac,	1	.
CG3980-RB	GCTGTGGCCCAAAGAGTTACGGTTACGGCACTGAACCCTCAGCTGCACAAGACCAAGATCAACAAAAAT	69	+	chr2L	3869976	3870045	3869976..3870045	CG3980-RB,CG3980-RC,	FBgn0031575,	Cep97,	1	.
CG16798-RA	CGGCGGACAAGTACACGATGAGGATCGATCACAAAGAGTGTGGAAGCTTGGTGAAACCGGAGACCAACA	69	-	chr2L	20378449	20378518	20378449..20378518	CG16798-RA,	FBgn0032856,	CG16798,	1	.
CG7157-RA	TCAAGGTCCTTCAATTGAGCCTAAGCTGGTCCCCCAACCCGGTTCACTGGACAAATTGCCATCAG	65	-	chr2L	18356958	18357023	18356958..18357023	CG7157-RA,	FBgn0011559,	Acp36DE,	1	.
CG3056-RB	CGGTTCCGGTCTCTCTTCCTGTTACCATGAACAGAGCCAGTCCACAAGCTTAAAGTGAGTGCAGACGGA	69	+	chrX	1267498	1267567	1267498..1267567	CG3056-RB,	FBgn0024987,	CG3056,	1	.
CG12052-RJ	TAGTGCCGGGTTTGCTTCAGTCTGAGTCCAAAGTCCTAATCACACAGAGTTCAGTCCAGTCCAGAGCGC	69	-	chr2R	6384484	6384553	6384484..6384553	CG12052-RJ,	FBgn0005630,	lola,	1	.
CG13711-RA	GCCGACGAGTTGAAGACTGTTAACCATCAGATCGTCTTTCGGCATAAACTTCGTCGCCAGATTCA	65	+	chr3L	4758277	4758342	4758277..4758342	CG13711-RA,	FBgn0035572,	CG13711,	1	.
CG18177-RA	AGCTGTAACCGAGTGATTTGGAATTAGCATAGCCCCCTTATCTTTTGAATGTAGCCCGTGTGTATGTTT	69	+	chr3L	9722374	9722443	9722374..9722443	CG18177-RB,CG18177-RA,	FBgn0036039,	CG18177,	1	.
CG12954-RA	CATTCACAAGCGAGGTGTACGAGACACGGGCATACTTGTCGACGGGCAGTATGTGGAGATTCCCG	65	-	chr2R	11104831	11104896	11104831..11104896	CG12954-RA,	FBgn0034001,	mRpL41,	1	.
CG14260-RA	GCAGCTCGTTGAGGTAACCCAGTTGTTCGGTCACGTTCTCTTCGAAGTGGATGGCACCATAGTTG	65	+	chr3R	23091906	23091971	23091906..23091971	CG14260-RA,	FBgn0039504,	CG14260,	1	.
CG12130-RA	CCTTGTGGTGCATATCGCAGAGAATTCCGATCGTGGTGTATTTCTAGTTGATTTATTGAGCCGTTTGTT	69	+	chr2R	5851001	5851070	5851001..5851070	CG12130-RA,CG12130-RB,	FBgn0033466,	Pal1,	1	.
CG13129-RA	GAAGAACGAGGCGATGAACGCGACTAGTGCATACCCCTTCCTCTACACCAACTATCTGCCCACCG	65	+	chr2L	10118000	10118065	10118000..10118065	CG34109-RC,	FBgn0083945,	CG34109,	1	.
CG12564-RA	CCCCCGATTTACCCCGACTTACCACGATTTTCCTCGATTTCCCTCGATTTCCCTGGATTTCCCCCCATT	69	-	chrX	21306672	21306741	21306672..21306741				0	no match
CR30260-RA	CCAGTTGATCCATTATATCCATAGCAAAATATTAATTGGCCACCTATCAAATTGGTATGTGCTCTGAA	68	+	chr2R	397505	397573	397505..397573	CR30260-RA,	FBgn0050260,	tRNA:CR30260,	1	.
CG14286-RA	CCTCCAGGCAAATCAAATTCACACCTACGGCTGAATCATCCAAAAAGTCTAGCTTTGTAAAGAAG	65	+	chr3R	14850196	14850261	14850196..14850261	CG14286-RA,	FBgn0038673,	CG14286,	1	.
CG8553-RA	CGTGCGCCAATGTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCTGATGCTGT	69	-	chr2R	10157225	10157294	10157225..10157294	CG8553-RB,CG8553-RA,	FBgn0261270,	SelD,	1	.
CG4536-RA	GCAGTCCACCATGTTCAATACCTACACCAGCACTTGGATGGCCCTGTTCCAAACCACACTGGGTGATTA	69	+	chrX	6710366	6710435	6710366..6710435	CG4536-RA,	FBgn0086693,	iav,	1	.
CG5832-RA	CAATAATAACAACAGCAACACCACTGCCAGCTCGAACCAAGCCAGCAAATCGCCCTCTCACCACC	65	+	chr3R	13392870	13392935	13392870..13392935	CG34419-RC,	FBgn0085448,	Hmx,	1	.
CG6639-RA	GGCTTGCAAATGGTAGAAGGAATAACCATTGATCAAGCACGACCAGCTCAATATCCCTGGGCTGTTGCT	69	-	chr2L	17455036	17455105	17455036..17455105	CG6639-RA,	FBgn0032638,	CG6639,	1	.
CG40050-RA	AGCTTAAAGCTGGGGAAGCAACTTGTGTGTCATGCTTGGGCGAAGATCTAGTCATCTTTCGTTCAAAGA	69	+	chr3L	24341594	24341663	24341594..24341663	CG40050-RA,	FBgn0259697,	nvd,	1	.
CG3035-RA	ACTGCTGCATTAAGTTATCCGGCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACG	69	-	chrX	6904186	6904255	6904186..6904255	CG3035-RA,	FBgn0000330,	cm,	1	.
CG7283-RA	TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGGTGCTCTGCCTGTCCG	65	+	chr3L	11817030	11817095	11817030..11817095	CG7283-RA,CG7283-RE,CG7283-RD,	FBgn0036213,	RpL10Ab,	1	.
CG9437-RA	AGCAACACGACTACGACGCTAAGCTGGAGTCTCATACCACACAATCGGAGACGTATTCGGTGGTCGTGG	69	+	chr2R	17056958	17057027	17056958..17057027	CG9437-RA,	FBgn0034599,	CG9437,	1	.
CG8986-RA	TCGAGCAGTTCTAGTTTGTAGTGTCGTCTAGGTCTACAGCCCATGAATGTAAATATTATTTATGATCGC	69	-	chr2R	7750068	7750137	7750068..7750137	CG8986-RA,	FBgn0033658,	TwdlBeta,	1	.
CG3924-RA	AGGATACTTCTGTTCTTGTCTTGACTGCCTTGCAAAGTACTTAATGTGTTGTTTTAGTAAAACATAACT	69	-	chr2R	19919072	19919141	19919072..19919141	CG3924-RA,CG3924-RB,	FBgn0013764,	Chi,	1	.
CG5047-RA	CCCTTAAGGAGGAAATGGGATTCAATGCCAAGGAGCTAAGTGACCTGGTGGTACGAAAGCCGCGCC	66	-	chr3L	20513065	20513131	20513065..20513131	CG5047-RA,	FBgn0037008,	mTerf3,	1	.
CG6741-RB	TCTTTAAGGGACCTGGACTGAAATCGTTGGGCTTCAGCATAGTGGGAGGTCGAGATTCGCCAAAGGG	67	+	chr2R	18059619	18059686	18059619..18059686	CG6741-RB,CG6741-RC,CG6741-RA,	FBgn0000008,	a,	1	.
CG5789-RA	GGGGAATCGGAAGCACTGAAGAAGACGGCCAGTGACAGCCACAAAAGAATGCAAAGAGAACGGGA	65	-	chr3R	20362677	20362742	20362677..20362742	CG5789-RA,CG5789-RB,	FBgn0039207,	CG5789,	1	.
CG8205-RE	GCGATTTGTGAAATGGGATTGCATTTTAATTCTAGCGGCGATCTTTTCCCGTGTCTCTCCATGGCAGCT	69	-	chr2R	11548503	11548572	11548503..11548572	CG8205-RE,CG8205-RB,CG8205-RF,CG8205-RD,	FBgn0023441,	fus,	1	.
CG4720-RB	TGCGGTACCATTGCATCAAACCCCATTGGATGTTCGCATTGGATAATCTGGTTAAGCGGGCCGTC	65	+	chr3R	15710378	15710443	15710378..15710443	CG4720-RB,CG4720-RC,	FBgn0014006,	Pk92B,	1	.
CG13042-RA	ATCATCCAACCGATTGTGGCTCCGGTGGTGAAGACCTATGCCGCTCCCATCATCAAGACTTATGC	65	-	chr3L	16301182	16301247	16301182..16301247	CG13042-RA,	FBgn0036602,	CG13042,	1	.
CG14166-RA	CTGGAATCGGAGGCGACCAAAGACAAGCGACAAGTGAGCTCCAAGGAGACGTCTCTGTACCCCAA	65	+	chr3L	9873394	9873459	9873394..9873459	CG34382-RC,	FBgn0085411,	CG34382,	1	.
CG1378-RA	GCCTCATCTCCGACATGTACAGTCAGCGCAAGATCTGAAAAGTATGTAGAGCCTAGACTAATCGCCGCA	69	+	chr3R	26679710	26679779	26679710..26679779	CG1378-RA,	FBgn0003720,	tll,	1	.
CR33471-RA	GGTTCCATGCATTCGAAAGCGGAATCGTGAATAAAATCACCTGGGATGCCTATCGGGAGTCAGTTGGCC	69	-	chr2R	7586731	7586800	7586731..7586800	CR33471-RA,	FBgn0053471,	Ir48a,	1	.
CG4399-RB	TCAGGAGCGGGAACTAGTGGTTCTCAGAAGCCATCTAATGTGGCGCAATTGCTTAGCTCTCCACCG	66	+	chrX	1915366	1915432	1915366..1915432	CG4399-RE,CG4399-RF,CG4399-RC,CG4399-RB,CG4399-RD,	FBgn0261954,	east,	1	.
CG10037-RA	AGTTCCACGTTAGACAAGCTCGACTGTATGCAAATCTTTAAAGAATAGAAATAAGATGAGGTCCGTCGA	69	+	chr3L	6786432	6786501	6786432..6786501	CG10037-RA,	FBgn0086680,	vvl,	1	.
CG9350-RA	GCCGATCCTCCCAAGAACTGGACCACGGAAAAGCCAAAGGAGTAAAGAAGGCGTAAAGTCTAGTTTCCT	69	+	chr2R	16913436	16913505	16913436..16913505	CG9350-RA,	FBgn0034576,	CG9350,	1	.
CG8351-RA	TGCAGCTCTGCATGGAAAAGATCAACGAAATGGCCGTCCAAATTGTCGAACAGTCCAAGGACCAGCAG	68	+	chr3R	4628025	4628093	4628025..4628093	CG8351-RA,	FBgn0037632,	Tcp-1eta,	1	.
CG5195-RA	ACCACGCCCGATATAACCACCACAACGCCTTTGATGCAGAGGATCGCCACTAGTACAACAAAAGCTTCT	69	-	chr3L	20448583	20448652	20448583..20448652	CG5195-RA,	FBgn0036995,	CG5195,	1	.
CG5071-RB	TGCGTCAGCCCATCGTTCACTGTTACCCCATCTACTTTCTGGACATGGAAATAGCAGGAGAACTGGCCG	69	+	chr3R	21445713	21445782	21445713..21445782	CG5071-RB,	FBgn0039347,	CG5071,	1	.
CG18081-RA	AGTCGATGAGAGGAGGGCGCGTAAAGTTAGAACATAGTTTCCAAAGCTAAGGGCCCAGCTGAATTTTTT	69	-	chr3L	15827265	15827334	15827265..15827334	CG18081-RA,CG18081-RB,	FBgn0036537,	CG18081,	1	.
CG30427-RC	TGGGTTTGGAAGTTTTGCAGTTCTTTACCACGCGAAGCTGGGACTTTAAATCCACACACTTCGAGCAGA	69	-	chr2R	20816835	20816904	20816835..20816904	CG30427-RC,CG30427-RE,	FBgn0043792,	CG30427,	1	.
CG13263-RA	GGCTTCCAAGATGGGTTCTGGTGATGCAGAGAACGGCAAGAAGATATTTGTGCAGAAGTGCGCCC	65	+	chr2L	16719124	16719189	16719124..16719189	CG13263-RA,	FBgn0086907,	Cyt-c-d,	1	.
CG31916-RA	GCCAGCTAGTGTGGATGCACATTTGGCTGACGATTTGTTCGATGGATTGAAACGTGTTGATGTCGCCGG	69	+	chr2L	5184862	5184931	5184862..5184931	CG42768-RE,CG42768-RG,	FBgn0261836,	Msp-300,	1	.
CG5208-RA	TCTGATTGAAACACTGTATCGCTATCTGCTGAAGTTGGAGGATTTGGAAAGCCCAGAAGTGATGGCCAC	69	+	chr3R	12871846	12871915	12871846..12871915	CG5208-RA,	FBgn0028470,	Patr-1,	1	.
CG6290-RA	AGAATCACCGAGCTCCCTGACGACCACCATCGAGTGTATTTTTTTTGTTTGTTTATAAGTGCAATAA	67	+	chrX	18332182	18332249	18332182..18332249	CG6290-RA,	FBgn0030921,	CG6290,	1	.
CG13890-RA	TAGCTACCGGCAATCACAGTAAAATGATCCACTGATTGGACTTTGTCGCTCATTCCGCGCACAGC	65	+	chr3L	851364	851429	851364..851429	CG13890-RA,	FBgn0035169,	CG13890,	1	.
CG1924-RA	CCGTGGGGGAGTAGGATGAGCAGAGCGAAGAAATGGAAGTTGACGATACCACCAAGAAGAGCATATAGC	69	-	chrX	12071032	12071101	12071032..12071101	CG1924-RA,	FBgn0030377,	CG1924,	1	.
CG5657-RA	CAGGGCATGGAGGTGATACCCGAGGTGGATTTGGTGAAGTTCTACGGTACCACGGACTTGGAGCG	65	-	chr3R	8247670	8247735	8247670..8247735	CG5657-RA,	FBgn0038042,	Scgbeta,	1	.
CG5629-RA	ATCTTGATCGGGATCCATATTGCGTGACCAGCTCGCATTATTGCCGTGTTCTGAATCCGGGCACG	65	-	chr3R	14967161	14967226	14967161..14967226	CG5629-RA,	FBgn0261285,	Ppcs,	1	.
CG9316-RA	TCCAGGCCATTGGATTCTGCTCGAAGGGATCAGGTCGTGATGTGGTGCTCAATGTAAAGGGAACCATGA	69	-	chr2L	20725125	20725194	20725125..20725194	CG9316-RA,	FBgn0032878,	CG9316,	1	.
CG31924-RB	GGCGGGTTCTAGGCAGTGCTCTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGAT	69	-	chr2L	1354808	1354877	1354808..1354877	CG31924-RB,	FBgn0051924,	CG31924,	1	.
CR31808-RA	AATCCACTTATTGCGTTTATTCGGGTTTATTAGTGCTTAAGTTTCGAGAACAGCCGACTACAACACGAG	69	-	chr2L	16704967	16705036	16704967..16705036	CG31808-RC,	FBgn0062978,	CG31808,	1	.
CG32956-RE	GCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTCGAAAGCTTCGTGCCCTCTCTGACGCAGGAT	69	+	chr2L	8437699	8437768	8437699..8437768	CG10890-RB,CG13399-RA,CG13399-RB,	FBgn0002887,FBgn0043002,	mus201,Chrac-14,	2	.
CG10627-RA	GCAGTGCCCACCTGTAGAGCGGAATGACGAACTAACCTCTCACGGGAATCGACAATTGACACAGATCCT	69	-	chr3L	12520678	12520747	12520678..12520747	CG10627-RA,	FBgn0036298,	CG10627,	1	.
CG6628-RA	TGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCTACCTGAAGACGGAAATCACACCGACGAGTGCCT	69	-	chr3L	10159592	10159661	10159592..10159661	CG6628-RA,	FBgn0036072,	CG6628,	1	.
CG6598-RA	GGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATCTGACCGATGGTGGATTCGATTACACCTTCGA	69	-	chr3R	6697043	6697112	6697043..6697112	CG6598-RA,	FBgn0011768,	Fdh,	1	.
CG12101-RA	AGGGGGAGGGAGATGTGATGAGAACCGAAACCAGCATACTGTTTAAGTCACGATGTGGAACGATGACGT	69	+	chrX	11005889	11005958	11005889..11005958	CG12101-RA,CG12101-RB,	FBgn0015245,	Hsp60,	1	.
CG13984-RA	TGCAGAATGAGCTGACCATTTTCCACTACCACCTACTCTTCGACTATGGAGCACCGATCCAGGTG	65	+	chr2L	6308885	6308950	6308885..6308950	CG13984-RA,	FBgn0260452,	CG13984,	1	.
CG8144-RC	CGTTGCGTGTTTTGTTTTTGGTACTCCCAACCAACTTATACGATACGATACGTTACATGGGGCATATAT	69	+	chr3R	5274176	5274245	5274176..5274245	CG8144-RF,CG8144-RG,CG8144-RH,CG8144-RI,CG8144-RJ,CG8144-RK,CG8144-RD,CG8144-RC,CG16765-RN,CG16765-RL,CG16765-RP,CG16765-RM,CG16765-RO,	FBgn0261552,	ps,	1	.
CG6753-RA	AAGCAGCTGATGCACTACTTCCAGGGCTATGTGTCCACCAGATTCCGGCAGTATGACTACGGTCC	65	-	chr3R	8466342	8466407	8466342..8466407	CG6753-RB,	FBgn0038070,	CG6753,	1	.
CG30172-RA	ACAGGCTCAAAAAGCGCAAAAGCTGACCACATTTCTGCAAACTAGATACCCGGACGTATGGGCCATGCT	69	-	chr2R	19918248	19918317	19918248..19918317	CG30172-RA,	FBgn0050172,	CG30172,	1	.
CG12783-RA	CGCAAGAACACCGGACGTACTCTTAGCGAGGATCAAATGAAACGTTTGCTCGCCTACCAGGAGCACGTT	69	-	chr3R	12438179	12438248	12438179..12438248	CG12783-RA,	FBgn0038448,	CG12783,	1	.
CG12524-RA	CATAACCGATCCGAAGATTGTGCAGAACGTGCTGATGTGCATCGAACGGGTCATGGACCGCATGG	65	+	chr3L	9947518	9947583	9947518..9947583	CG34356-RC,	FBgn0085385,	CG34356,	1	.
CG30460-RC	AGGAGGCGAGTCGTACAGTAGCGGATCCGAACACTCTTTTGCAACCAATCCAAAACAGGAGCAGAACAT	69	-	chr2R	12954680	12954749	12954680..12954749	CG30460-RI,CG30460-RB,CG30460-RC,CG30460-RA,CG30460-RD,CG30460-RE,CG30460-RF,CG30460-RG,CG30460-RH,	FBgn0050460,	CG30460,	1	.
CG1318-RC	TCAAACTGAACACCTTCCACTGGCACATCACGGACTCGCACAGCTTCCCATTGGAGGTGAAGAAG	65	+	chr3L	4289975	4290040	4289975..4290040	CG1318-RA,CG1318-RB,CG1318-RD,CG1318-RE,	FBgn0041630,	Hexo1,	1	.
CG11271-RC	CCCCATCTCTCATTCTCCTTTAAATCCCACTCAGCTTTATAAAATTGAATTGAAATTTTGCTCGAAAAA	69	+	chr3L	13029399	13029468	13029399..13029468	CG17672-RA,	FBgn0083978,	CG17672,	1	.
CG6720-RA	GCTTAGCAACCGAAAACATTGTAACGAGTCACATTCGATGAAAAACTGCATCATGAATTGCACATTGAC	69	-	chr2L	10765749	10765818	10765749..10765818	CG6720-RA,CG6720-RB,	FBgn0015320,	UbcD2,	1	.
CG12378-RA	GTACTCAAGAGCAATGCAAAAAATTAAGGAAACACAAAACCTTTCTGAAGTATCACAACCTTTCAAACA	69	-	chr3R	15739153	15739222	15739153..15739222	,CG4755-RA	,FBgn0038747	,RhoGAP92B	1	.
CG12933-RA	GGTGGAGACCCAGAAGCAAACACTGATTGCCCGCGACGAGAGTATCAAGAAGCTGCTGGAAATGC	65	+	chr2R	5398500	5398565	5398500..5398565	CG42344-RJ,CG42344-RK,CG42344-RL,CG42344-RD,CG42344-RE,CG42344-RF,CG42344-RG,CG42344-RH,	FBgn0259246,	brp,	1	.
CG32776-RB	GCGCAAACCGAAGTGGAGTCGAACACGGAAGTGCAGGAGTACAGGAGGGGTCAACTTATGAGGAAGTTT	69	-	chrX	3789613	3789682	3789613..3789682	CG42541-RC,CG42541-RD,	FBgn0260658,	CG42541,	1	.
CG8592-RA	ACTTGGACGGTTCTGAAGAAAAGATGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGT	69	+	chr2R	8457963	8458032	8457963..8458032	CG8592-RA,	FBgn0003527,	stil,	1	.
CG9526-RB	TCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTACGCTCCAACTGTTGAAGCCACCCTGGA	69	+	chr2L	6457353	6457422	6457353..6457422	CG9526-RB,CG9526-RA,	FBgn0031815,	frj,	1	.
CG9749-RA	TCATGGATGGTGTTACCGGTCTGTTTCCGGGCAACTACGTAGAGCCTTGTGTCTAAGCCTCGCATC	66	-	chr3R	9945776	9945842	9945776..9945842	CG9749-RA,CG9749-RC,CG9749-RD,CG9749-RB,	FBgn0020510,	Abi,	1	.
CG7808-RC	CCTTTCTTTCTCGCTTTTTACTCGAACATGGGTATTAGCCGCGATAGTGCACACAAACGCCGGGCC	66	+	chr3R	25687625	25687955	25687625..25687656,25687920..25687955	CG7808-RC,CG7808-RB,	FBgn0039713,	RpS8,	1	.
CG31171-RA	TCAAAGCATTGGCATTAGGGTCAAGAGCAATAAAGTGGCCATAACATAAACACACTAACGATTCGGACA	69	-	chr3R	17758278	17758347	17758278..17758347				0	no match
CG3299-RA	TCCAAGGAATCTAGAATCGCCCCTCCATCGTATTTGTAGTGTACTAACAGAAGCATTTATCGAAGCCCT	69	-	chrX	2108511	2108580	2108511..2108580	CG3299-RA,	FBgn0004397,	Vinc,	1	.
CG17691-RA	AAGAAAAGTGTTTTTTGCACCTTGAAGCACCCGTTAAACGAGTGGCTGGTTGGGATACTCCGTTTCCCC	69	+	chrU	1184589	1184658	1184589..1184658	CG17691-RC,CG17691-RE,CG17691-RG,	FBgn0039993,	CG17691,	1	.
CG9222-RA	GGGTGGCTGTCAAGATCATATCCAAAGTGAAGGCTCCCTCCGAGTACACGCAAAAGTTCCTGCCGC	66	+	chr2L	6131546	6131612	6131546..6131612	CG9222-RA,	FBgn0031784,	CG9222,	1	.
CG17081-RA	GCGCGCAAGGAGCTGTGTGATAAGTTGGATGTGGAAAGAAGCAAACTCAATGCGGAGCTGAATGATGTG	69	+	chr3L	15120297	15120366	15120297..15120366	CG17081-RA,CG17081-RB,	FBgn0036480,	Cep135,	1	.
CG11086-RA	TTCATTGTGAAATTGCCACTCAAAATTGAAACAGCGCGGACAAACGGTTGAAGAAACACAAAGCCCAGT	69	+	chr2R	3136670	3136739	3136670..3136739	CG11086-RA,	FBgn0033153,	Gadd45,	1	.
CG31141-RA	GCTCCGCGACCATCATGTTTATCATGTTCGCCAACTTTTATTTCCAGTGCTACCTGAGACCGAAGCATA	69	+	chr3R	19749840	19749909	19749840..19749909	CG31141-RA,	FBgn0051141,	CG31141,	1	.
CG7972-RA	GCTGGCGAGAGTATCCTGATAGCCCAGAGCAAAGACAATCTGCTGGTCGGACAAATGCTTTTCTCGCCT	69	+	chr3L	8133065	8133134	8133065..8133134	CG7972-RA,	FBgn0002899,	mus301,	1	.
CG33135-RA	TCGAAGAGAAGCTAGACATTCTGATTAAAGCTTACATGGAGGATCGTGATAGATTCCTGGCTCTTCCGC	69	-	chr2R	6034838	6034907	6034838..6034907	CG33135-RE,CG33135-RF,CG33135-RC,CG33135-RD,	FBgn0033494,	KCNQ,	1	.
CG10185-RA	AGTGTGGAACCGTGTGTCCGAGCAGGTAGTTTTTAGGGACGACCAACCAGGAATTCAGCAAATCACCCT	69	-	chr3R	11887504	11887573	11887504..11887573	CG10185-RA,	FBgn0038397,	CG10185,	1	.
CG16778-RA	TGTTGGATCGAAGCAGTCCTCTTCCGTGGACGAAGACTACTCAGGTCCTGGAATACCGCTCTCGC	65	-	chr2R	20974504	20974569	20974504..20974569	CG16778-RB,CG16778-RC,CG16778-RD,	FBgn0003715,	CG16778,	1	.
CG7664-RA	CCAGGACCTCCTTTTCCAAGCTTCAATCGCCAACAAACCACAATACATACATACATACAGCCACTGTAA	69	-	chr2L	16264985	16265054	16264985..16265054	CG7664-RA,	FBgn0001994,	crp,	1	.
CG7098-RA	GCCAGACTGTAAATTAGCCACGCTATTCGACACGTACACGTAGCCTCTAGTGTCCGCAATCCAAGTTGT	69	+	chrX	17981749	17981818	17981749..17981818	CG7098-RA,	FBgn0030891,	dik,	1	.
CG17612-RB	CGCAGGTTTGCGTACAATTTCTCCGGAGTAAGTCTCCTGGACAAATATTCCCTTGTCCCAAATGCCCGA	69	-	chr2L	4381087	4381156	4381087..4381156	CG17612-RB,CG17612-RA,	FBgn0031597,	CG17612,	1	.
CG7088-RA	GCGTTCTGCCCCAGGATCAATAGAACCAAGTGGATCGGAAGGTAAACCACGCGTAGGCATAACAATTCA	69	-	chrX	18688684	18688753	18688684..18688753	CG7088-RB,CG7088-RC,CG7088-RA,CG7088-RD,	FBgn0001090,	bnb,	1	.
CG6172-RA	AGCGACGAGTCCTGTTCACCAAGGCGCAAACATATGAGCTGGAACGTCGGTTTCGACAACAACGTTACT	69	+	chrX	490811	490880	490811..490880	CG6172-RA,CG6172-RB,	FBgn0261930,	vnd,	1	.
CG10202-RA	ATTCCCGTCGTGGAACAGAAAGAGGCCGATCCAGAGTTTCCCACCCTCGTTAAACCAAATCCGGA	65	-	chr2R	10706494	10706559	10706494..10706559	CG10202-RA,	FBgn0033969,	CG10202,	1	.
CG16961-RA	ATCGATGGTGTTGGAATTATTCCCGTGCTGCTATTACGGCACCCTGATATCCGTGGAGATGAACCAGCT	69	+	chr2L	11937236	11937305	11937236..11937305	CG16961-RA,	FBgn0026391,	Or33b,	1	.
CG1674-RA	TGCCTTAACACCAATTCCGTCTTCCCAAGCTGGTAGTAAGGACTGGACGGACGCTAATGAGCCCA	65	+	chr4	264114	264179	264114..264179	CG1674-RB,CG1674-RE,CG1674-RF,CG1674-RH,CG1674-RI,CG1674-RJ,CG1674-RK,CG1674-RL,	FBgn0039897,	CG1674,	1	.
CG31207-RA	ACGAAGGTCAGTGGGTTTGATGAGAATCCCACATCCAGCTTGATTGAAATACACGGCCGGATACCCAGT	69	-	chr3R	16872245	16872314	16872245..16872314	CG31207-RA,	FBgn0051207,	CG31207,	1	.
CG9107-RA	TCTACACCTTCCAAATACGCGAGAGCAAGATGCAGAATATCGTCGAGATGCGCAAGAAGTTCGAGG	66	-	chr2L	6023664	6023730	6023664..6023730	CG9107-RA,CG9107-RB,	FBgn0031764,	CG9107,	1	.
CG32521-RB	GCAGCGACTGAAGTAGCTAGCCTAGCATTCCATGTGGAGATCGACTTTGGAGTCTCCTTTCAAAACAGT	69	-	chrX	21076637	21076706	21076637..21076706	CG32521-RA,CG32521-RB,	FBgn0052521,	CG32521,	1	.
CG32552-RA	GCAGCCGGAAGACCAAACGACCATTGAGCCGCCCTTTTAAGCCGTGTTAGTAGACCGCGGTCGTC	65	-	chrX	17957103	17957168	17957103..17957168	CG12348-RI,	FBgn0003380,	Sh,	1	.
CG9320-RA	CCACTTGTTCGCCTCTGTGATTGTCCCGGTCTAGTCTTTCCCTCGAGTACTCCCAAAAGCCTGCAAG	67	+	chr2L	20753893	20753960	20753893..20753960	CG9320-RA,	FBgn0032882,	ns4,	1	.
CG10326-RA	GTGGTGTTTGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGCTGATTAC	65	+	chr3R	12469841	12469906	12469841..12469906	CG10326-RA,	FBgn0038453,	CG10326,	1	.
CG7813-RA	TGTGACGCCGAAAAGGAAACTGATCCTTGCAAGCTCATGGAAGAGGAAACCGTTTGCAAGCCAGATCCT	69	-	chr2R	12385467	12385536	12385467..12385536	CG7813-RA,	FBgn0034133,	CG7813,	1	.
CG10222-RA	GGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAACCGGTGCTAAGTGTGATGGAGC	68	-	chr3L	13405347	13405415	13405347..13405415	CG10222-RA,	FBgn0036356,	CG10222,	1	.
CG5920-RA	GGAGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGACTTCTTCCTGGGATCCTC	69	-	chr2L	9896879	9896948	9896879..9896948	CG5920-RA,	FBgn0004867,	RpS2,	1	.
CG8287-RA	GCCAGCATTAACGTGGAAGAAGCCTTCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGC	67	-	chr3L	19861828	19861895	19861828..19861895	CG8287-RA,	FBgn0262518,	Rab8,	1	.
CG14640-RA	ATTACAAGGAACGTCACATCACCGTCGGCGTGCCCAAGCGCAACTACAACGTGGTGTTCATCAAG	65	+	chr3R	80840	80905	80840..80905	CG14640-RA,	FBgn0037227,	TwdlV,	1	.
CG17681-RB	GCATCAGTTAGTGCTCCCCCAAAGAGCAAGTACACTCGAACATTTGTTCACCAAATCGTTATGGGCTCA	69	+	chr2L	18143177	18143246	18143177..18143246				0	no match
CG7939-RC	GGGCCCACGTGTATTTCCATTAATTTTAAGCCGTAATTGTCGTTTTTGGCGGTTTCGAGTTGAACTGCG	69	-	chr3R	25871770	25871839	25871770..25871839	CG7939-RC,CG7939-RD,	FBgn0002626,	RpL32,	1	.
CG8229-RC	TATTTGCAAACCAGAGAAACGACTAAGTAGGGAGGTATAAAACAATAATGACTTCGTTGGACTGCAGAT	69	-	chr2R	4835697	4835766	4835697..4835766	CG8229-RE,CG33199-RA,CG33199-RB,	FBgn0033356,FBgn0053199,	CG8229,CG33199,	2	.
CG10269-RA	CCACTTCCAATGCAGCTGACACTGTCCGGAAAAGTTGTAGGCATGCCTCGAATTGCTCTCTAGCTGGAT	69	-	chr3L	6179347	6179416	6179347..6179416	CG10269-RA,	FBgn0022935,	D19A,	1	.
CG11095-RA	CGATCCGCCGACCGTAATCCTACTCAGGCTAGCAACAATCTGGTACTGTGATTGGGCCAAATGTGCTTC	69	+	chrX	13706720	13706789	13706720..13706789	CG11095-RA,	FBgn0030528,	CG11095,	1	.
CG31750-RA	TGGCTGAATAGCCTATCCTGGAATCGCTCATTTGTGGATCGCGTGAATGACGTAATCCGGTTGAACGGT	69	+	chr2L	17182306	17182375	17182306..17182375	CG31750-RA,	FBgn0046888,	Gr36d,	1	.
CG4962-RA	TTTGCATTTCGTAGTCAGAAGCGGAAATACAAATTGTGTACAAAATCCCTCAAAAACCCAGACACCCAC	69	-	chr3L	16287976	16288045	16287976..16288045	CG4962-RA,	FBgn0036597,	CG4962,	1	.
CG4565-RA	TTGAGTGCAATGACATGTGCAAATGCTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGA	69	+	chr3R	6678722	6678791	6678722..6678791	CG4565-RB,CG6567-RB	FBgn0037841,FBgn0037842	CG4565,CG6567	2	.
CG12165-RA	CAGCTGGAGATGCCACTTTTGAGGTGCACTCCAACGACAAGAAACAACCTCTGAGTAAGCAGGACAGCC	69	+	chr2R	3167499	3167568	3167499..3167568	CG12165-RA,	FBgn0260991,	Incenp,	1	.
CG2788-RA	CGGGCCATCGAACGACATCGAAATAAGCCCTACGATCTGCTACTCACGGAATACTTCAACTCCGATTGC	69	+	chr2L	3619687	3619756	3619687..3619756	CG2788-RA,	FBgn0015663,	Dot,	1	.
CG16937-RA	CCGAGATCGTTTCTATGAGAAGTTCACAGGTGCCGATCAGAGGACATGGGACGAACACTGGCCGG	65	-	chr2L	22262389	22262646	22262389..22262432,22262624..22262646				0	no match
CG10473-RA	TAGCATTTTACAGCGCCTAACGTCACCTCACCCCAAAACGAAACCACAGCAACCAGAAATGCGCC	65	+	chr2L	19048457	19048522	19048457..19048522	CG10473-RA,	FBgn0263198,	Acn,	1	.
CG18563-RA	CGGTGGAGGTTATGCATTGTTCTGCTCCCTCGGAGATGAGAATCCACACGTCTTCGAGCAGGCTG	65	-	chr2L	17456868	17456933	17456868..17456933	CG18563-RB,	FBgn0032639,	CG18563,	1	.
CG13339-RA	ACGAAAGATGTCTCAAAACCAAGAAAACCCTACCAAAAACGGACAGAAAAACCGAAAACAGAGGCGACC	69	+	chr2R	9712580	9712649	9712580..9712649	CG13339-RA,	FBgn0033871,	CG13339,	1	.
CG1332-RA	CCCAGCTGAATACTCAGAATAGCTATTCACCCAAGCCCTTGACGGTGCTCTATGGTCACGACGATGCCA	69	+	chr3L	4219108	4219177	4219108..4219177	CG43367-RC,CG43367-RD,CG43367-RE,CG43367-RF,	FBgn0263110,	CG43367,	1	.
CG18817-RB	CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGGAGATCATGGGCGACG	65	.	.	.	.	.	CG18817-RA,CG18817-RB,CG18817-RC,	FBgn0029508,	Tsp42Ea,	1	.
CG32982-RA	AGCAATGCGAATCTCAGTCGATACTCCAATGGATATGTCTCGGCCCAGAACAGTTTCACCCAAGCCGGA	69	+	chr2L	9161735	9161804	9161735..9161804	CG32982-RB,CG32982-RA,CG32982-RD,CG32982-RE,CG32982-RF,	FBgn0052982,	CG32982,	1	.
CG15105-RB	GTGGCCGATTCTGGCAATAACCGCATTCAGATCTTCAATCCGGATGGCAGTTTCCTGAAGACCTTCGGT	69	+	chr2R	14896098	14896167	14896098..14896167	CG15105-RA,CG15105-RB,CG15105-RC,	FBgn0034412,	abba,	1	.
CG4325-RA	TGCCGCCTACTTTCAGCTTTATCTGGACTTTGAGGAGTTTCCGGAAAGTGCATCGGCTCAGGGTG	65	-	chrX	1937348	1937413	1937348..1937413	CG4325-RA,	FBgn0026878,	CG4325,	1	.
CG14050-RA	GCCACTCCGAGAATCTGATGCGGCATTTGAAACGTAAGCATGAGGATGCCTACAAAAGTGTTCTGGACG	69	-	chrX	2219554	2219623	2219554..2219623	CG14050-RA,	FBgn0040392,	CG14050,	1	.
CG13295-RA	GCGGCTGGAACATTGAGCACTACCGTGGCTGTTTAAAGACCCTTGAGCGACTATCCAACACCCATTTGT	69	-	chr3L	6067360	6067429	6067360..6067429	CG13295-RA,	FBgn0035674,	CG13295,	1	.
CG6749-RA	TGGAGAGCCTGAGTAGCGTACAGGAGATCCTAGTGGACAACAATCGCCTTACCTTTCTGGCCAAGGTGA	69	-	chr3L	9724791	9724860	9724791..9724860	CG6749-RA,	FBgn0036040,	CG6749,	1	.
CG12341-RA	CCAACACTCCATTCTCCACATCGCGCCCAATCCAATGTTCACAGAGTTCCGACTTCCAAGCGGACATAT	69	-	chr2R	6699767	6699836	6699767..6699836	CG12341-RA,	FBgn0033550,	CG12341,	1	.
CG4554-RA	GATTTGCGGAAAGGCTACCACTGGTTCTACCCACTCTGGTGAACGTTCTGACTTTGGGGCATGCG	65	+	chr2R	18378094	18378159	18378094..18378159	CG4554-RA,	FBgn0034734,	CG4554,	1	.
CG31249-RA	TTTTGTATAGTAATCCGTTGAAAGCATGCTGTCGCTCAAGATGAAACTCGAGGTACTGGGTCGTCCCGA	69	-	chr3R	13512643	13512712	13512643..13512712	CG31249-RA,	FBgn0051249,	CG31249,	1	.
CG12710-RA	CGATCCTCAACCTCTGGTATGACCAATATGGAGCCGTCGTGCCCATCACAGTCACCTCCAACATTGC	67	-	chr3R	27315427	27315494	27315427..27315494				0	no match
CG17189-RA	CCACCCTTTCCGCCAATCTTACGGATATGCTGATCAGGGGCTTTGGCAAAATGCTGATCAAGGAGAGCA	69	+	chr3R	22927633	22927702	22927633..22927702	CG17189-RA,	FBgn0039485,	CG17189,	1	.
CG10069-RB	TGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTACAACCTCTGTAAGTGCAGAGCTGGGC	65	+	chr2R	17172420	17172485	17172420..17172485	CG10069-RA,CG10069-RB,CG10069-RC,	FBgn0034611,	CG10069,	1	.
CG12817-RA	CCAAGCTGAACCATTTGAGACTGTAATACCGCAAGCAAAAGAAAACCAAGCACTTGACTGCACCCCGTT	69	-	chr3R	6049468	6049537	6049468..6049537	CG12817-RB,	FBgn0037798,	CG12817,	1	.
CG13309-RA	GGCCATCAAAAATGCCACCGAGTATTGTCAAACCATTCAAACAGCCGGAAAATATCCTTATGGCGGAGA	69	+	chr3L	8803944	8804013	8803944..8804013	CG13309-RA,	FBgn0035933,	CG13309,	1	.
CG8317-RA	AGGGTCCTCTAGCACTTAGCCACTTAGCCACTTTCGATGCGTCCTAGTTCTAAGTCAAATGCACTGCAG	69	-	chr2R	12462278	12462347	12462278..12462347	CG8317-RA,CG8317-RB,CG8317-RC,	FBgn0034140,	CG8317,	1	.
CG2165-RA	CCAATGGCATGTGACGGTTTGCGGACTATATCTGTAGCATATCGCGATTTTGTGCCTGGTAAAGCCGCA	69	-	chr4	371681	371750	371681..371750	CG42314-RO,CG42314-RP,CG42314-RQ,CG42314-RR,CG42314-RS,CG42314-RI,CG42314-RJ,CG42314-RK,CG42314-RL,CG42314-RM,CG42314-RN,	FBgn0259214,	PMCA,	1	.
CG3696-RA	TTAGGAGCCAATTTGGAGAAAACGGATTTGGGTTTGTCTCAACGCCATAAAGTTCGACACTGCTGCAAC	69	-	chr2L	211841	211910	211841..211910	CG3696-RA,CG3696-RB,CG3696-RC,CG3696-RD,CG3696-RE,CG3696-RF,	FBgn0086902,	kis,	1	.
CG11369-RA	TTCCATTGCCGCAAAGAAGCTACGACAAGCCGTGGATACTGAAACGCTCTAAAAAGAGACGCTTGGCG	68	+	chrX	7469690	7469758	7469690..7469758	CG11369-RA,	FBgn0029951,	CG11369,	1	.
CG10984-RB	GCGCCCTATTCCGTTTGCACGTATTTGAAGGACGACGAGGTCTACAACATGATCACACCGGAGCAGGAT	69	+	chr3L	12745863	12745932	12745863..12745932	CG10984-RC,CG10984-RA,CG10984-RB,	FBgn0036305,	CG10984,	1	.
CG13579-RA	CCATTTCACTGGGCTTCATAGTGATGGTCACTCCGTGGACGATTCAGGAAATAGTCACCGCCTGCAC	67	+	chr2R	20375271	20375338	20375271..20375338	CG13579-RA,	FBgn0035010,	CG13579,	1	.
CG14842-RA	TGGCAATGGCAATGGACCCATGGATTCTGGAAAATTTAGCCTGTCCGATGTGGAGCAACCAGCAG	65	+	chr3R	10244746	10244811	10244746..10244811	CG34388-RC,CG34388-RD,	FBgn0085417,	CG34388,	1	.
CG10513-RA	GCTGCTGTTCTGAACGAACGTCAACCCGGATTGCTGACCAAGTTCGATCACGGCATCTTCAATCG	65	-	chr3R	21102317	21102382	21102317..21102382	CG10513-RB,	FBgn0039311,	CG10513,	1	.
CG6830-RA	CGTGCTGCCATTGGTTCTCTTGGACCCCACTCAGTCGGCCACATTCGATAATTTTATGTCGGACTCTGC	69	-	chr3R	7508355	7508424	7508355..7508424	CG6830-RA,	FBgn0037934,	CG6830,	1	.
CG10219-RA	GGAGCAATCAGTTGATGAACCACGAAACACCAGTTATTTATTCATAGTTTCGCGATAAGCATTAAATAA	69	-	chr3R	19585366	19585435	19585366..19585435	CG10219-RA,	FBgn0039112,	CG10219,	1	.
CG9862-RA	CGGCCAACAGAGGACTCATCATATACTCGCTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAG	67	-	chr2R	17546816	17546883	17546816..17546883	CG9862-RA,	FBgn0034646,	Rae1,	1	.
CG2155-RA	ACGAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATACGAGACATGTTGGATGCAGAGGTCA	69	+	chrX	10818383	10818452	10818383..10818452	CG2155-RA,	FBgn0003965,	v,	1	.
CG15708-RA	CCAGTGAACTGGTGCGACACATCCAACAGGATCATCCGGAGATATACGCAGTGACCACGGATAAAATCA	69	-	chr2R	12129183	12129252	12129183..12129252	CG15708-RA,	FBgn0034099,	CG15708,	1	.
CG17152-RA	GGCTATCCTCCTTCAGCTCGATGAGAACGTTCCTCATGGGTTGGATCCTCTTCAGCTACGTCCTGTCCA	69	-	chr3L	12119308	12119377	12119308..12119377	CG17152-RA,	FBgn0036250,	Ir68b,	1	.
CG15581-RA	ACGAGACTCGGGGAGATTCCTACCACAGGACCTTGAATTCGAACATAGATCGACTCCTCGGCATCATGA	69	-	chr3R	1903611	1903680	1903611..1903680	CG15581-RA,	FBgn0037399,	Or83c,	1	.
CG8262-RA	ATCCCTTCAACCCATCTCCTCCGCGAAAATCACTGCCCCAGGTTGTCTATTCCGACATCGACGTC	65	-	chr2R	4787061	4787126	4787061..4787126	CG8262-RA,	FBgn0027513,	ana2,	1	.
CG31716-RA	TGCTGAACTTATGGAAAATGAGGTGGTCCAAAAACAGAGTATTAATAATGAGAACCCCTTGCCGAAGTT	69	+	chr2L	10401959	10402028	10401959..10402028	CG31716-RC,CG31716-RD,CG31716-RE,CG31716-RB,CG31716-RG,CG31716-RA,CG31716-RH,CG31716-RI,	FBgn0051716,	CG31716,	1	.
CG12960-RA	AGCACCTCAAGCTGATCATCTTTGTCCTGTGCTTCGCCAGCGTTATGATCACCACCATGTATGAGGCCT	69	+	chr2R	11388226	11388295	11388226..11388295	CG12960-RB,	FBgn0034023,	Ir52a,	1	.
CG7953-RA	ACCTCGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACATCACTGGATTCATGGGCAAC	66	+	chr2L	13848694	13848760	13848694..13848760	CG7953-RA,	FBgn0028533,	CG7953,	1	.
CG3849-RA	CCAACAGCCCAAAATTTAAATTTTTAGTGCATTAACTTATACTGCATCCACTACATACATAGATATATA	69	-	chr3L	16670823	16670892	16670823..16670892	CG3849-RB,CG3849-RA,CG3849-RC,CG3849-RD,	FBgn0063485,	Lasp,	1	.
CG4998-RA	CCGGTTGACACCTCCTCCGATGAGTTCGTTTTCCACTTCTGACCGAAGCCATCTTTCAACACTCTCGCA	69	+	chr3L	16337927	16337996	16337927..16337996	CG4998-RA,CG4998-RB,	FBgn0036612,	CG4998,	1	.
CG17105-RA	CCACTGCCAACGCTAATGCAAACGCAAACTCAGTTGGTTACAGTCCGGGTGCTTACTACGGATAA	65	+	chr2L	10681293	10681358	10681293..10681358	CG17105-RA,	FBgn0032280,	CG17105,	1	.
CG2212-RA	ACCCACAATCCTGCATCCCATCCCTCTCATTCACCTAACCAATCCACACACATTGTAATGGAAGGCACA	69	-	chrX	7851089	7851158	7851089..7851158	CG2212-RA,CG2212-RB,CG2212-RC,	FBgn0003656,	sws,	1	.
CG32271-RA	AGACGGGTGTCAGAAGTGGTGTGGACAAGGTTTATACCCCAAAGGCTTACAACACCCGCACCCTC	65	-	chr3L	3202739	3202804	3202739..3202804	CG32271-RA,	FBgn0052271,	CG32271,	1	.
CG7708-RA	GGCTGCAGTTGATACCAGAGAATTATCCGATTTTATGTTGCGCTTGTTAGGGGGACACAAATGGGGGGA	69	+	chr3R	14510436	14510505	14510436..14510505	CG7708-RA,CG7708-RB,	FBgn0038641,	CG7708,	1	.
CG6179-RA	CTATTGAGTTGGCAGATTTCAGCGGATTTCCATTGCGTCTCAGCTTATTTAGTGATCAAGATACGGTCA	69	+	chrX	18274071	18274140	18274071..18274140				0	no match
CG6889-RA	AAGGCAAAACAGCGAACTCCTAGCCAAGTAAGTTTGAAACGGAAGCAAAACAAAATTCTATATTAGCGT	69	+	chr3R	12085602	12085671	12085602..12085671	CG6889-RA,CG6889-RB,	FBgn0040071,	tara,	1	.
CG6794-RA	GCCCAAAAAACAGTTGAAAGCCTAAAGCGCAGTCTCATGAGCACCAATTTACATCCATCCAAGCAGGTT	69	-	chr2L	17415290	17415359	17415290..17415359	CG6794-RA,CG6794-RB,CG6794-RD,	FBgn0011274,	Dif,	1	.
CG32507-RA	TGCGTCAGCACCACAACCTTACAACTCTGTTCAGGATGAGGCTACTCCTGGAGAAATATTTCCGAGAAT	69	-	chrX	20652049	20652118	20652049..20652118	CG32507-RA,	FBgn0052507,	CG32507,	1	.
CG13396-RA	GCCGGTCTATTTGCCCGTGAAAAGTCCCCATATAGCCTACCGCTTTGTCAGTATTCCTGTGGCGTCGAA	69	-	chr2L	8402292	8402361	8402292..8402361	CG13396-RA,	FBgn0001084,	fy,	1	.
CG2201-RB	AGGAGCCCGATTGGATTTGGAATTGTATGCAGCGTTGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCA	69	-	chr2L	21616404	21616473	21616404..21616473	CG2201-RB,CG2201-RC,CG2201-RA,CG2201-RE,CG2201-RF,	FBgn0032955,	CG2201,	1	.
CG2845-RA	CGCGCCACTGCAATATCCTCCTCTTCATGGGCTGTGTATCCAAACCATCTCTAGCGATTGTGACCCAGT	69	+	chrX	2236617	2236686	2236617..2236686	CG2845-RB,CG2845-RA,	FBgn0003079,	phl,	1	.
CG31182-RA	CAACCGCACCCGAATTACCCACCACAATCCCCAATCACAACTCCCGCTTTTGAGTTCTGTTTTCGCTTT	69	-	chr3R	17153191	17153260	17153191..17153260				0	no match
CG18766-RA	GCTGGGCGTCCCTGTTACCGCACTCGAGGTTCACTTTAAAGTCAACAATCTAACGCAGCGCTACC	65	-	chr3R	23069274	23069339	23069274..23069339	CG18766-RB,CG18766-RA,	FBgn0042111,	CG18766,	1	.
CG1756-RA	ACGGAAAGGAGGGATAGAAACCAGACAGCGAGATTGAGCTTCCATCGATGAAAAAAGTGCTGCATAGTT	69	+	chrX	11370107	11370176	11370107..11370176	CG43155-RC,	FBgn0262685,	CG43155,	1	.
CG15529-RA	ACCTGTTCATAAGGCAAGTGGATAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCT	69	+	chr3R	25978562	25978631	25978562..25978631	CG15529-RA,	FBgn0039748,	CG15529,	1	.
CG13300-RA	GGAGGACTTGAGCAGCTTTGGTGACGTGACGTTCGACATCTTCGATGACGATGACGACTTGTTCGGC	67	-	chr3L	6325747	6325814	6325747..6325814	CG13300-RA,	FBgn0035699,	CG13300,	1	.
CG8787-RA	AATACCAACTCATCGGCCGTCGCGCTTATGGAAGCTGGCAACAACTACATAGTGACGACCAACGC	65	+	chr2R	10398538	10398603	10398538..10398603	CG8787-RA,	FBgn0261823,	Asx,	1	.
CG7981-RE	GGCTGCATCTCCAGGCTATACAACTTCCAAAAACCTGTCAATCTCCTAGCGGACATTAAGGATGCGGCA	69	-	chrX	2367921	2367990	2367921..2367990	CG33950-RD,CG33950-RB,CG33950-RC,CG33950-RD,CG33950-RI,CG33950-RK,CG33950-RL,CG33950-RM,CG33950-RO,CG33950-RS,CG33950-RT,CG33950-RU,CG33950-RW,CG33950-RX,CG33950-RY,CG33950-RZ,CG33950-RA,	FBgn0261451,	trol,	1	.
CG12984-RA	ACGGATCAACCACTTGTACCAATGCCTCCAACGACCTCTCGCCACGATAGGCAACATTTTAAGGACCCT	69	+	chr3L	20985012	20985081	20985012..20985081	CG12984-RA,	FBgn0037042,	CG12984,	1	.
CG15509-RA	CCCAAAACGATTCAACAAAAGCTGATCAGGTAAAGCAACTCTCGCCAGTTTCCACACTAAATTCTCAGA	69	+	chr3R	25619682	25619751	25619682..25619751	CG33956-RD,CG33956-RA,CG33956-RB,CG33956-RF,	FBgn0001297,	kay,	1	.
CG8596-RA	ATATCCCATTGGGGTGACTCTCATCCAGACCATATTCTCCAAAGTTCTGGGACCTCGGCCGCAGG	65	-	chr3L	7335492	7335557	7335492..7335557	CG8596-RA,	FBgn0035767,	CG8596,	1	.
CG7765-RA	AAATGGATTACGTTATACATACTTAACATAACTGATAATTGCCTTCGCTTAGATGAGATGTGTCGCGAT	69	-	chr2R	12154648	12154717	12154648..12154717	CG7765-RA,	FBgn0001308,	Khc,	1	.
CG14537-RA	TCCCATTGCCTTGGGACATGCCTTCTTCGTGCTTCCACTGTTTTGCGATTTGGGTTGCAGCCTGG	65	+	chr2L	7840825	7840890	7840825..7840890	CG14537-RA,	FBgn0031954,	CG14537,	1	.
CG13253-RA	CGTGCGGCAGACAAAAGCGCATGAAAAATTCATTGGGAACCGTCGGAACCGAAAGTTTAGCGTCAGGAT	69	-	chr3L	20712197	20712266	20712197..20712266	CG13253-RB,CG13253-RC,CG13253-RD,	FBgn0037015,	CG13253,	1	.
CG14022-RA	GGTCCGGTTTGTGTGGCCTTATAGTTTTGTGTGTTTGTTTTGTGCATTACTTGGCTAAGTTTGTAAATA	69	-	chr2L	5328001	5328070	5328001..5328070	CG14022-RA,	FBgn0031700,	CG14022,	1	.
CG31784-RA	CCCCCCTGGCACAATAAACCGAAAACCCATCAGGATGAAAACTGCCAAAAGAGCTATCCAGAATGCGGA	69	-	chr2L	17113798	17113867	17113798..17113867				0	no match
CG8641-RA	CCACCGCAAATTGTATCGCATACGGAATGAAGTCTTTCAATTGGATATTTTGGATACTTCTGGCT	65	-	chr3L	7054991	7055056	7054991..7055056	CG8641-RA,	FBgn0035733,	CG8641,	1	.
CG6320-RA	CGCCGAGAAGCTAGCCCAATGTCCACCGGATATGTTCGATGTAATCCTAGACGAGAATCAGCTGGAAGA	69	-	chr2L	11163252	11163321	11163252..11163321	CG42403-RF,CG42403-RG,CG42403-RE,CG42403-RI,CG42403-RJ,CG42403-RK,	FBgn0259822,	Ca-beta,	1	.
CG8591-RA	CCGGGACCAGGAGGAAAACGAAGAGGATGACAACCCAGAGAGCTATGACTTGGCTGAAATCGAGCCG	67	-	chr3L	7347486	7347553	7347486..7347553	CG8591-RA,	FBgn0035769,	CTCF,	1	.
CG17200-RA	TGGCTTTGTTTCCGGTTCCCTCCCATTCGCACTATTATCATGCCCTTCCATATCTCAAAAACTTGGCCT	69	-	chr3R	6991657	6991726	6991657..6991726	CG17200-RB,	FBgn0040253,	Ugt86Dg,	1	.
CG15185-RA	AGCACAGGCGAGGTGTTAGGCATAATGCTCAATAACGTCATTCGCGGATTTGCCATCAACGACCACCTC	69	+	chr3R	2354147	2354216	2354147..2354216	CG15185-RA,	FBgn0037449,	CG15185,	1	.
CG15240-RA	TGCGCACTCTTCGTTGGAGTCGATGGTGAATTTCATTGCGGTCACATCAAGTACTGTTCCCTGCACCAT	69	-	chrX	3804814	3804883	3804814..3804883	CG42541-RC,CG42541-RD,	FBgn0260658,	CG42541,	1	.
CG14006-RA	GGCCACGTATGAGCACTCCTGTTACGGCATCTACACATCCAAACCGTTCGTCCTCACGCTTGAAGTGAT	69	-	chr2L	5728297	5728366	5728297..5728366	CG14006-RA,	FBgn0031733,	CG14006,	1	.
CG33097-RA	AGGAGCTTCACAAGATCGTGTTCGACCCGCGGTATCTTCTGCTGACTTCGAAGGAACGCAAACAGGTAT	69	-	chr3R	2191790	2191859	2191790..2191859	CG42724-RC,CG42724-RE,CG42724-RG,CG42724-RI,	FBgn0261641,	CG42724,	1	.
CG4648-RA	GTTCGGGGAATTGGTGGTAGATGCCATTAAGGTGCAGACGGAATCAGAACCTACTGCCCATGAGGAGCT	69	-	chr2L	145640	145709	145640..145709	CG42399-RB,	FBgn0259818,	CG42399,	1	.
CG2669-RA	GCGCGTTTGCTATCAAAGAGATGAGGGATATGCTTGGAGCTAGACACCAAGTGCTCCTCACACTAGAGC	69	-	chr3R	1198370	1198439	1198370..1198439	CG2669-RA,	FBgn0086695,	hd,	1	.
CG16984-RA	GCATCTGGAAGCCGAGTGAGGTGTCTCCATGGATTCACTTGCTTTGCTCTTAGAGGCGGACACACAAAA	69	+	chr3L	2596885	2596954	2596885..2596954	CG16984-RA,	FBgn0062517,	CG16984,	1	.
CG8348-RA	CAAGGAGTCGTCACAGTTACAGTTTGCGGACTCCCAGCAATCAGCATCGACTGGACCACAATCCC	65	+	chr3R	5474985	5475050	5474985..5475050	CG8348-RA,CG8348-RB,	FBgn0012344,	Dh44,	1	.
CG14507-RB	ACGGTCAGAGCAACTGCATCTCCTATCTGGAATACTTTGTGCCCTACGTGTGGAAGTGCTACCGC	65	-	chr3R	25052171	25052236	25052171..25052236	CG14507-RC,	FBgn0039655,	CG14507,	1	.
CG6877-RA	GGGAGTGCATTTATACTTGATCATATTCCTCAAATTCGTTCAGACCGTCATACCAACCATCGAATACGA	69	+	chr3L	18743389	18743458	18743389..18743458	CG6877-RA,	FBgn0036813,	Aut1,	1	.
CG6781-RA	TCTGGACGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAGTGCAGGACAAGTT	69	+	chr3L	8514023	8514092	8514023..8514092	CG6781-RA,	FBgn0086348,	se,	1	.
CG32476-RA	CACTCCGTTGTGCACATCTATGGGATCCCGAACCAAGGGTTCATTGGCTACGTCATACAGTTTTGTATT	69	+	chr3L	249065	249134	249065..249134	CG32476-RA,	FBgn0052476,	mthl14,	1	.
CG10930-RA	AGCGACCCACTGATATTCCGGATGAGGGTATCATGTGCGATCTCCTTTGGGCGGATCTAAATCACACCA	69	-	chr2R	13843368	13843437	13843368..13843437	CG10930-RA,	FBgn0003140,	PpY-55A,	1	.
CG32334-RA	TACGGCAATTGTTCAAATTTCGAGCTGCTACCGCATGCAAAATATGTGTAATTGTTTGATATAAG	65	-	chr3L	1111833	1111898	1111833..1111898				0	no match
CG7929-RA	GGCACCTGTTTCACAATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTTTTGAT	69	-	chr3R	25863278	25863347	25863278..25863347	CG7929-RA,	FBgn0041102,	ocn,	1	.
CG17239-RA	CCGCTTCGGTGGACATTGTGGACCAGGATCAGTGTCGTAGGTCGTACGGAAGAAAAATCACCAAGGACA	69	-	chr2L	2251783	2251852	2251783..2251852	CG17239-RA,	FBgn0042186,	CG17239,	1	.
CG18091-RA	TTCAATGCGCTGCCAGCCGTCGATAAGAACGCACGCGAGCGGGTCAAGTCATCCGGCAGACAGAG	65	-	chrX	1202465	1202530	1202465..1202530				0	no match
CG7230-RA	GGCACTCGTAGGCCATCTTTGGAAACCAGCTAGTTGTAGGCCTTAAAACAGTGTTACTCCACCATCCCA	69	+	chr2R	15167977	15168046	15167977..15168046	CG7230-RA,	FBgn0003254,	rib,	1	.
CG8367-RA	GCCTCTCGCCTCTCCGATAGCCCGAAAAAAATCAGATAACCAGTTAACCCACATAACTCGATATCCCGT	69	+	chr2R	10067464	10067533	10067464..10067533	CG8367-RD,CG8367-RB,CG8367-RC,CG8367-RA,CG8367-RI,	FBgn0000289,	cg,	1	.
CG2863-RA	AGCCACTCCATATTTGTTTTTCGTGGGCGAGGATGAGATCAAGAAGAGCCTGGAGGACACGTTGGACTT	69	-	chr2L	567813	567882	567813..567882	CG2863-RA,	FBgn0021874,	Nle,	1	.
CG1772-RA	CCGCATTTCGGCTCATTGCTGCTTTGTTTTTGCGACCTACTAACATTGTAACCAATTCGACCAGTGGAA	69	+	chr2R	5603142	5603211	5603142..5603211	CG1772-RA,	FBgn0010316,	dap,	1	.
CG12807-RA	GGCCGAGGGAAAGTCCAACTATAACACGGATGTGATCAGCCACGTATTCTACTTGGGCAATCAACAGGT	69	+	chr3R	5825134	5825203	5825134..5825203	CG12807-RA,	FBgn0037772,	Spn85F,	1	.
CG31815-RA	CCGCCCAGGAGATTTCCCGGCTTTACAATGTCATTGTTCAGACACCGTCAGATGAACCAATTCCTTGGA	69	+	chr2L	16606903	16606972	16606903..16606972	CG31815-RA,	FBgn0051815,	CG31815,	1	.
CG6208-RA	TGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATAT	69	-	chr3R	5946624	5946693	5946624..5946693	CG6208-RA,	FBgn0037789,	CG6208,	1	.
CG18635-RA	CGGAATCCGACAAGATAATGGAGAACTTTCGAGCCCGCAAGTCATTGCCGAACTCAGGTGAGGCC	65	-	chr2R	13656453	13656518	13656453..13656518	CG18635-RA,	FBgn0034279,	CG18635,	1	.
CG32538-RA	CATTTCCCACACCTGTCTGACATCCTCTGCGGAGTACGAACTGGCGCTGATACTCAAGGAGCTGC	65	-	chrX	19224150	19224215	19224150..19224215	CG32538-RA,CG32538-RC,CG32538-RD,CG32538-RE,	FBgn0086778,	gfA,	1	.
CG4926-RA	CGCTCCGGAAAACTGTCCCACTGCTGTCTACTCGCTAATGATCGAGTGCTGGCATGAGCAGTCAGTAAA	69	+	chr2L	10254446	10254515	10254446..10254515	CG4926-RA,	FBgn0010407,	Ror,	1	.
CG7180-RA	CGGAGTACAAGTACTGCTACGATCTGGTGCTCCACTATGTCCTCCACTTCCTCAACAAGAAGGAGTGAA	69	-	chr2L	18182067	18182136	18182067..18182136	CG7180-RA,	FBgn0032673,	CG7180,	1	.
CG8172-RA	GCGCCTAAACCACGAAGAGTATGGCATCGAGCGAAAGGAAGTGCATCCCCATTACAATCCGGCAGAC	67	-	chr2R	4895627	4895694	4895627..4895694	CG8172-RD,CG8172-RE,CG8172-RF,	FBgn0033362,	CG8172,	1	.
CG7188-RB	ACGTCGGCGTTTTCGTTATGGCTGCCTTCATCGTCTACGATACACAGAACATTGTGGAGAAGTGCCGAA	69	-	chr3L	8300985	8301054	8300985..8301054	CG7188-RA,CG7188-RB,	FBgn0035871,	CG7188,	1	.
CG14870-RA	AAAAAGAAGTCCCGGAGTGCCAAAGAAAGTGTTCCCAATGCAATGGACGCGAAAGCCACTGCCAG	65	+	chr3R	11307815	11307880	11307815..11307880	CG14870-RA,	FBgn0038342,	CG14870,	1	.
CG32185-RA	GGTGACAATAGTGGCCTCCTATCGTCAACCATATCCCGAGGAGTTCCAGACCAGTCCAGAGCAGC	65	+	chr3L	17488035	17488100	17488035..17488100	CG32185-RA,	FBgn0052185,	CG32185,	1	.
CG3747-RA	GCAGCGAGAACAGCAATAAGATTTAAGATGAAAACAACGTAACATTTATCGCCTAAATTAGGGATACTT	69	+	chr2L	9341122	9341191	9341122..9341191	CG3747-RB,CG3747-RA,CG3747-RC,CG3747-RD,	FBgn0026439,	Eaat1,	1	.
CG4675-RB	TGGTCATTGGAAAGAACTTCCCGGTCAATCAGGGCATATACGACTGTGTCTGTACACCGCCAATTGGGA	69	-	chr2L	7229702	7229771	7229702..7229771	CG42253-RA,CG42253-RB,CG31906-RA,	FBgn0259111,	Ndae1,	1	.
CG11041-RA	TCCAGGCCTTTAAGATCTTGGATCCGGAGAACAAGGGCTATCTCACCAAGGAGAGCTTTGGCAAACTGA	69	+	chr2R	16034034	16034103	16034034..16034103	CG11041-RB,	FBgn0034481,	CG11041,	1	.
CG12219-RA	TTTGCATATTAGCCATACCGAATGTACTTATCCGACGTTTCGTGTACTCCACAAAGTCAAGGCGTCCCG	69	-	chrX	6193184	6193253	6193184..6193253	CG12219-RA,	FBgn0043796,	CG12219,	1	.
CG12288-RA	ACTCAATTCAATGAGATTCGTTTGACTTTCTGTTACGAAGTTAACCACCGGATCAGTTTCCGTAGCGGA	69	-	chr2L	16900612	16900681	16900612..16900681	CG12288-RA,	FBgn0032620,	CG12288,	1	.
CG14235-RA	ACACAAATGTTCAATTACTTGAATTCTGAACCGATCGTTTGTGTTTGTTTCTTCTTGATCCTTGATC	67	-	chrX	19634679	19634746	19634679..19634746	CG14235-RA,CG14235-RC,CG14235-RB,CG14235-RD,	FBgn0031066,	CG14235,	1	.
CG31703-RA	TCGAAAAAACTGGCCAGCATCGGTACCAAGTCCTTAGTTCTACACGCGGGGTCCATGTGCCTACCATTT	69	-	chr2L	22103286	22103355	22103286..22103355	CG31703-RA,	FBgn0051703,	CG31703,	1	.
CG8221-RA	TGTGGGTGTTCGTATCTATGTGGATGTGCTGTTGAACCACATGTCCGGAGATTTTGACGGTGTGGCTGT	69	-	chr2R	12539819	12539888	12539819..12539888	CG8221-RA,	FBgn0020506,	Amyrel,	1	.
CG2444-RA	CCTCGCTCGATCCCAGAGTTTCCACCAGAGATTACCCAAAACGAAATCCAGTATCGAGCAGTATGTCGC	69	-	chrX	11598954	11599023	11598954..11599023	CG2444-RA,	FBgn0030326,	CG2444,	1	.
CG16896-RA	CTAAAGATTTTGCCTGGCCCCTTCTGAGCACTGCCTTTTCCGAGGTCCTTGAAGAGGAGCAGTGG	65	-	chr2R	20760053	20760118	20760053..20760118	CG16896-RA,	FBgn0035073,	CG16896,	1	.
CG13992-RA	TGAACCCATTCGGACCCTTCGGAGCCCTCAATCCTTTCAATCCTTTCAACAGAGTTCTGGGAGCACC	67	-	chr2L	5965951	5966018	5965951..5966018	CG13992-RA,CG13992-RB,	FBgn0031756,	CG13992,	1	.
CG32395-RA	TGAGGGAAGTGAATCTGCTCAACCGCTTTACACGCCAGTTCCTGTTTCTCATCGTGTTGGTGACCCAGA	69	-	chr3L	6660846	6660915	6660846..6660915	CG32395-RB,	FBgn0041232,	Gr65a,	1	.
CG5877-RA	GCCAGCTGAGATGTCTTTGGAGGAGTACTTCCAGCCCAACAAATTGCTCATCCTCTTGCGCGCTATCTG	69	+	chrX	15189745	15189814	15189745..15189814	CG5877-RA,CG5877-RB,	FBgn0030625,	CG5877,	1	.
CG5869-RA	TGAAAGCCAAGCTCAAGTAGAGAGGTTTCGATCTCTGGGATCAATCAATCCGGGCCGTTGTCAAAAGCA	69	-	chr2L	16302027	16302096	16302027..16302096	CG5869-RA,	FBgn0028894,	CG5869,	1	.
CG7757-RA	CCAGGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAACAGCCATAACCAACCT	69	+	chr3L	19904518	19904587	19904518..19904587	CG7757-RA,CG7757-RB,	FBgn0036915,	CG7757,	1	.
CG8774-RB	CAACATCGAATGGCTATCCAGAAACGAAGCTGACATCACCGACTGGCTAAGTGGAACGGCCTCGC	65	+	chr3R	9127862	9127927	9127862..9127927	CG8774-RB,CG8774-RA,	FBgn0038136,	CG8774,	1	.
CG15638-RA	GGTCCTGGCTGAAGAATTCCTTTGCAAATGCATAATCATTCGGTTTAGGTGGTGCCAAATTCAAGTGCT	69	-	chr2L	13535326	13535395	13535326..13535395	CG15638-RA,	FBgn0028943,	CG15638,	1	.
CG17544-RB	GCCCAGTCCAAGCTTTGAGGAGGATTACCACCGAGGATTAGAACCTAGTTACCAAGTGCCTGACTTCGA	69	-	chr2L	19390617	19390686	19390617..19390686	CG17544-RA,CG17544-RC,CG17544-RB,CG17544-RD,	FBgn0032775,	CG17544,	1	.
CG6843-RA	GGCGAGAAGGACGCTCATGCCGATGACCAAAATCCCGAACTAGTTTTTCTCAAATCCCTGTCCAAGAAA	69	+	chr3L	18895523	18895592	18895523..18895592	CG6843-RA,	FBgn0036827,	CG6843,	1	.
CG13884-RA	CCGACGGGATAATAACAAGCATCTCTAACACCCAACAGCCGTTAGGGAAATTCTAAGTTGGCAGACCGA	69	-	chr3L	365817	365886	365817..365886	CG13884-RA,	FBgn0035138,	CG13884,	1	.
CG4548-RB	TCGACGAGCAGCAGATTTCACGGCACTACAATCAGACGGACCTTATGGAGCTGTACTCGTACGAGCTGA	69	-	chr3R	21304636	21304705	21304636..21304705	CG4548-RA,CG4548-RB,	FBgn0039338,	XNP,	1	.
CG15884-RA	GATGGCCAGTATCGTGAGGACCCCTCGGTGTACTACAAGGACCAGAAGTTCAATCGCCCCCTTTC	65	-	chr3R	22915918	22915983	22915918..22915983	CG15884-RA,	FBgn0039481,	Cpr97Eb,	1	.
CG31213-RA	CGCTATCGATAGCGGGTCGGTACTTTGTCTTGATGATACAAATGGTAGTGTCGATCACGCGACCCAAAG	69	+	chr3R	15803755	15803824	15803755..15803824	CG31213-RA,	FBgn0051213,	CG31213,	1	.
CG6276-RA	ACAGCAGCTGGACAACTATCTGGACTACTTTGACGAGGCGGAACACAACAACTCCGAGCTGGATGACAT	69	-	chr3R	11144993	11145062	11144993..11145062	CG6276-RA,	FBgn0038316,	CG6276,	1	.
CG13951-RA	TGCCCTACGTCAAGGCCTTCAGCTTTGGACATCAAACGCAGAGGAGTTTCTACACAGGCAAAGATCAGA	69	+	chr2R	5287125	5287194	5287125..5287194	CG13951-RA,	FBgn0016970,	l(2)k10201,	1	.
CG8491-RA	CGCCCAACCAGATGAATCAGATGAACATGGGAGGTCAAGGCATGTCGCAGAATCCGATGATGCAG	65	+	chr3L	19837015	19837080	19837015..19837080	CG8491-RA,CG8491-RB,	FBgn0001324,	kto,	1	.
CG8332-RA	AGAAGAAGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTTCTGGACATGC	66	-	chr2R	12458425	12458491	12458425..12458491	CG8332-RA,CG8332-RB,	FBgn0034138,	RpS15,	1	.
CG17097-RA	AGCTAGGAACACAGACTTTAGAGTCACAGTCTCCATCCGAGGTGCTACTACACATTCAGGGGCCTTCCA	69	+	chr2L	10648467	10648536	10648467..10648536	CG17097-RB,	FBgn0032275,	CG17097,	1	.
CG7146-RA	TGGTGATCATCTGCCGCTGATCTTTGAGTTCGCTGACTGGGTCTTAAACGATAATCCCGAGGAAGGCCT	69	-	chr3R	14098134	14098203	14098134..14098203	CG7146-RA,	FBgn0038593,	CG7146,	1	.
CG10305-RB	TATGCATCCAGTTCTTTTTTAATTTCAAATAAACAGCGTGCTTCATTGGGAAACAGCTACTACCTACAA	69	-	chr2L	18442508	18442577	18442508..18442577	CG10305-RB,CG10305-RC,CG10305-RA,	FBgn0261597,	RpS26,	1	.
CG10998-RB	GCACCGCTCTAAAGAGCTTCGAGAATCGCCTCGTGGTAGTCGATGAGAATCTCAAGGATTGCACGGGC	68	-	chrX	20896352	20896420	20896352..20896420	CG10998-RA,	FBgn0031142,	r-cup,	1	.
CG3683-RA	TGCCGCAAGACCCAGGGAGTGTTCGACAAGTGTATCAAAGATAACTTCGACTGGGATCGTCCCTCCTAT	69	+	chr2R	20552616	20552685	20552616..20552685	CG3683-RA,CG3683-RB,CG3683-RC,CG3683-RD,	FBgn0035046,	CG3683,	1	.
CG4494-RA	AAATCAACATGTCTGACGAAAAGAAGGGAGGTGAGACCGAGCACATCAACCTGAAGGTCCTCGGC	65	-	chr2L	6967243	6967308	6967243..6967308	CG4494-RA,	FBgn0026170,	smt3,	1	.
CG32490-RE	CAACAAAGTTGAAAAAACGTCTTAGCGATGCGTTTAAGAATTGTCCTTTGAGAAACTTGTTCTGA	65	.	.	.	.	.	CG32490-RE,	FBgn0041605,	cpx,	1	.
CG10859-RA	TGTTCTGCATCGGAGACAACATGGGCAACTTGGAGTTTTGGGACCTGCTGATGTCTCACAAACGACCG	68	-	chr2L	13397032	13397100	13397032..13397100	CG10859-RA,	FBgn0032520,	CG10859,	1	.
CG7800-RA	AGTCCGGACTTCACCATGAACGACCTGAATCAACTGCCGTACCTAACAAGCCTTCAATTGCGACGTGGA	69	+	chr3R	4044004	4044073	4044004..4044073	CG7800-RA,	FBgn0037552,	CG7800,	1	.
CG4681-RA	TCAATGTGTGTAGATTGTCCAGGTCTTTTATCAAATCACAATCGTTGTTGCAAGAAACTTAGCCACCGT	69	-	chr2R	20467141	20467210	20467141..20467210	CG4681-RA,	FBgn0069913,	CG4681,	1	.
CG4877-RA	CGCATAAGCACAAGTCTCACAAGCATAGGAGCTCCCATAAGTCCCAGGCTGAATCTTCCGCCACCATCA	69	+	chr3L	16383114	16383183	16383114..16383183	CG4877-RB,CG4877-RA,	FBgn0036624,	CG4877,	1	.
CG32490-RH	GCTCCATACAGAGTTAGGAACGATCAAACTAATGAATGAATGCCTTAACGTGGCTCAAATGACTAGACC	69	+	chr3R	126282	126351	126282..126351	CG32490-RJ,CG32490-RK,CG32490-RI,CG32490-RC,CG32490-RA,CG32490-RG,CG32490-RH,CG32490-RL,CG32490-RM,CG32490-RN,CG32490-RO,CG32490-RP,CG32490-RR,CG32490-RS,CG32490-RT,CG32490-RU,CG32490-RV,CG32490-RW,CG32490-RX,CG32490-RY,	FBgn0041605,	cpx,	1	.
CG9220-RB	TGCCATCTACAAGTCGGACATACTCGATGAGGATATCAACGGATTCGATAAGGACATCACCGGCTGG	67	-	chrX	15480383	15480450	15480383..15480450	CG9220-RC,	FBgn0030662,	CG9220,	1	.
CG8846-RA	ACACGTCCAGCGGAAAGTTTTCGAAACCAATCCAATCAATCAGCTAAGATGTCCGCTTCACCCACCG	67	+	chr2L	3478567	3478634	3478567..3478634	CG8846-RA,	FBgn0261560,	Thor,	1	.
CG15138-RB	CCTCCACAACACACACTTTTCACCGATTTTTCCGTCTTCGCTTTGCATAGAAAATAAAGAAACTCACTG	69	-	chr2L	17189852	17189921	17189852..17189921	CG15138-RA,CG15138-RB,	FBgn0032629,	beat-IIIc,	1	.
CG17743-RA	ACCAGTATTTCGGGGAAAAGTGGTTGTTCAAACGCTGAATCAAACAGCCAGAGTGAAGATACCTCTGCA	69	-	chr4	1193580	1193649	1193580..1193649	CG17743-RA,CG17743-RB,	FBgn0002521,	pho,	1	.
CG8112-RA	ATGGAGCATTACGCCCTAAAGAACTGCAACCTAAGCAACGAGAGTTGGACGTATCGCCTGCTGCC	65	+	chr3R	4540808	4540873	4540808..4540873	CG8112-RA,CG8112-RB,	FBgn0037612,	CG8112,	1	.
CG2595-RA	TGCCGTGATCTTCGCTCCAACTCTGTTCGGAGATCTGGATCTAACCCTCGAAAATGTCGTCACTTGGCA	69	+	chr3R	3112840	3112909	3112840..3112909	CG2595-RA,CG2595-RB,	FBgn0045843,	RacGAP84C,	1	.
CG15625-RA	GCCTCCGCTCTGTGTGCGATGAACATCAAGAATTTCGATCACATCCGTCACATATCCTATGGCATCCGT	69	+	chr2L	4890479	4890548	4890479..4890548	CG15625-RA,	FBgn0031644,	CG15625,	1	.
CG4603-RA	AGTGTGAAGCTCAAGTCCAAAAAAGGTCAATTCATTGTCAACGACCTGAACGAGCATACGACGCTGGGG	69	+	chr3L	5127505	5127574	5127505..5127574	CG4603-RA,	FBgn0035593,	CG4603,	1	.
CG9067-RA	CAGGAACTGGAATTGCAATATCATGTTAACGCCGCCTTAGACGTCGTGGAGGAGAAGTGCCTGAT	65	-	chr2R	7166912	7166977	7166912..7166977	CG9067-RA,	FBgn0033605,	CG9067,	1	.
CG8959-RA	AAGGGTCGTGTGGTGAACTTCACTTGCTTCCTGAGGGAACTTAATCTGCCCCTCAACTTGCCAGC	65	-	chrX	15674649	15674714	15674649..15674714	CG8959-RA,	FBgn0030691,	CG8959,	1	.
CG4917-RB	CGGCGATCACAACAGCGTGCTTGTTGGTCTTACCCTATATGACATCGAGTTTTAAGGATACGCCGCGCT	69	-	chr3R	18514046	18514115	18514046..18514115	CG4917-RA,CG4917-RB,CG4917-RC,	FBgn0039003,	wfs1,	1	.
CG10018-RA	AGCACTGCAGTAAGATGCCTGAATTGGCCGGATCTAGACTCCGTGCTAACAGAAGATCGCAGCGG	65	+	chr3R	1382326	1382391	1382326..1382391	CG10018-RA,	FBgn0037338,	Snm1,	1	.
CG8379-RB	TACGCCAACTCCATGATGCACGACAGCAATCTTACCTTCAAAGTCATGCTGCATCGGGCGCAGAT	65	+	chr3R	4651820	4651885	4651820..4651885	CG8379-RA,CG8379-RB,	FBgn0037638,	CG8379,	1	.
CG4375-RA	ACAAGACTACCAACGGAGGTCTCTGCGAAAAACCAATCTCCAAGGTCGAGCCTGAACAATCTCGG	65	-	chr2L	1026383	1026448	1026383..1026448	CG4375-RA,CG4375-RB,	FBgn0031295,	CG4375,	1	.
CG33104-RA	ACCACTGGCCTCATTGTTCCGTGTGTTTCCCTCATTTGGCAGGAATTGCGAATTTCATCGATGGATCGT	69	-	chr3R	5510280	5510349	5510280..5510349	CG33104-RA,	FBgn0069242,	eca,	1	.
CG9034-RA	TGGTTTGTTCGTTGTGTAACTTAACTGAACGCGTTGAATTTTTGTGTACCAAGATGTCCGCATCC	65	-	chrX	9053860	9053983	9053860..9053881,9053939..9053983	CG9034-RA,	FBgn0040931,	CG9034,	1	.
CG10948-RC	TGCCGCTAGTCACAAGAAGGTTTGGGACCATTTCACCAAAGCCCAAAGAAAAAACATCGATCAATGGAA	69	-	chr3L	12840162	12840231	12840162..12840231	CG10948-RC,CG10948-RD,	FBgn0036317,	CG10948,	1	.
CG31121-RA	GGCACAGGCTACCGAACTGTACATTCCATAGAAACTAATTCTTGAAATAAATAGTGTTTAGTCGAGGCA	69	-	chr3R	20707205	20707274	20707205..20707274	CG31121-RA,CG31121-RB,	FBgn0051121,	CG31121,	1	.
CG8325-RA	CCGACCTCGTGAAGCTTTGGGAGTTGTTGAGGATGCTTTACACGAGTTTCCCGATAACCTGCAGCTACT	69	-	chr2R	2099288	2099357	2099288..2099357	CG8325-RA,CG8325-RB,	FBgn0021847,	l(2)k14710,l(2)k14710,	1	.
CG4953-RA	TGGCGAATCTGCCGAATTTCCATTGTCCGTCTGTCCATCTAAATTGGGCCTCGTGAAAATAACACCCTT	69	+	chr2L	10268182	10268251	10268182..10268251	CG4953-RA,	FBgn0032204,	CG4953,	1	.
CG5781-RA	GCCGAATCCCTGGAAGCAAACAAGGGTCACCGCTAGAAAAGATTCTCAGGCAGCCTAGAAATGAGATTG	69	-	chr2L	12696459	12696528	12696459..12696528	CG5781-RA,	FBgn0032448,	CG5781,	1	.
CG15096-RA	CCGAAACTACTAGTCAGCTAGTTCCGCTCTCCTTCAAATCCAAAACTATCAATCCTATTTGCAGCCAGG	69	-	chr2R	14696012	14696081	14696012..14696081	CG15096-RA,CG15096-RB,	FBgn0034394,	CG15096,	1	.
CG3216-RB	GCGATGTGTACTCCTTTGGCATTATTCTGGAGGAGATCGTCAACCGTGGTGGACCCTACCAGGAG	65	-	chr2R	16875421	16875486	16875421..16875486	CG3216-RC,CG3216-RD,	FBgn0034568,	CG3216,	1	.
CG11050-RA	TGGACAGACTGCCGAGAGCAAGTTCGTCAAGGATTTGGATCGTCTGGATATGGTTATGCAGGCGTTCGA	69	+	chr2L	6616224	6616293	6616224..6616293	CG11050-RA,CG11050-RB,CG11050-RC,	FBgn0031836,	CG11050,	1	.
CG1762-RA	GCTTCTTCGTCTATCAGGTCATCGACCACTCAAACTTCTTGACCATCCAGGCAGTTGATTGCGAGCCCC	69	+	chr2L	21056897	21056966	21056897..21056966	CG1762-RA,	FBgn0010395,	betaInt-nu,	1	.
CG17255-RA	GGGGAATCCCCGTCACAATCGCAAAATGGCAACTCAGCTAAATCACCGTAGCGAGGAGGAAATTAATTT	69	-	chrX	10358097	10358166	10358097..10358166	CG17255-RC,CG17255-RA,CG17255-RB,	FBgn0261710,	nocte,	1	.
CG4109-RA	CAGCAGAACGAAGGACTCGAGGTTCTATCAGCCACATTGTCCAGACAGCGCCAACTGGCCACACA	65	-	chr3L	16579569	16579634	16579569..16579634	CG4109-RA,	FBgn0036643,	Syx8,	1	.
CG33066-RC	TGGACAGGTGCGTTACCAAGTTCGCGCGCTTCAACCAGAATATGATGAAAGTTTACGTGGATGTGCAGA	69	-	chrX	19512141	19512210	19512141..19512210	CG17767-RB,CG17767-RC,CG12788-RA,	FBgn0027358,FBgn0031041,	Tim9b,CG12788,	2	.
CG8241-RA	CTGTGCGCATTCAGAAGGCAATCTGCTCCGGATTCTTCCGCAATGCAGCAAAAAAGGATCCGCAG	65	+	chr2R	10044170	10044235	10044170..10044235	CG8241-RA,	FBgn0086895,	pea,	1	.
CG17045-RA	GGCAATCGTTTGAACCGCGCGGAACTGTCACTTAGCAGGTTCTCATTTGATAGCCATGTTGGTCGTCCT	69	-	chr3R	9230514	9230583	9230514..9230583	CG17045-RA,	FBgn0038150,	yellow-e3,	1	.
CG6218-RA	GCGGACTTCGATCTTCCGAGAAACTATGCCGACAACGTCACAGTACTGTACACGTACACCGATCCTCGA	69	-	chr3R	11164341	11164410	11164341..11164410	CG6218-RA,	FBgn0038321,	CG6218,	1	.
CG7853-RA	CGCCGGAACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGTTCCTGCTCAGCT	69	+	chr3L	17036292	17036361	17036292..17036361	CG7853-RA,	FBgn0036695,	Papst2,	1	.
CG12325-RA	GGGCGTACAACGGGGAGACATGTCATCCAGGAGATTCCAGCAAGAGGTTAGGGTGTTCTCCGTAAAGTT	69	+	chr2R	6713682	6713751	6713682..6713751	CG12325-RA,	FBgn0033557,	CG12325,	1	.
CG12402-RA	GGCTACTGCAACCGTCTCACTTCAGAGGGATTTGAGGCATTGACCCAAAACTGTCCATCCCTGGAGG	67	-	chr3R	9931531	9931598	9931531..9931598	CG12402-RA,	FBgn0038202,	CG12402,	1	.
CG8378-RA	CCGCTGAACCAACCCACACAACCAACACGGACGAACTTTTCCTTTGCTAACTTTAACTGGAGACAGCGT	69	+	chr2R	8030355	8030424	8030355..8030424	CG8378-RA,	FBgn0027495,	CG8378,	1	.
CG32447-RA	GCCCCACCTGACCCTGGGAATTTTGATATATTCCTATCGGTCGGTCAGAGGGTTCGTGGAAGTTCGTGG	69	-	chr3L	21686442	21686511	21686442..21686511	CG32447-RA,CG32447-RB,	FBgn0052447,	CG32447,	1	.
CG31821-RA	GGCCCTGCAGATCAATGGTACTGTCTATGCGTCACAGGTTATGGAAGTGTTGTCCAGCCTTCACGGAGA	69	-	chr2L	15901430	15901499	15901430..15901499	CG31821-RA,	FBgn0051821,	CG31821,	1	.
CG10360-RA	TTTGCGCCCTCAACGACTCCCAGTGCTGAGAATAAGAAACCAGAAGAGCAGGGTCAATCCAGTGG	65	+	chr2L	19544521	19544586	19544521..19544586	CG10360-RA,CG10360-RB,	FBgn0003231,	ref(2)P,ref(2)P,	1	.
CG4637-RA	TGGCGCCACGATTGAGATGGAATCCTGGAAGAGCGATCCTGATCCCAACGATCCTGTATTGTATTATAT	69	-	chr3R	18954405	18954474	18954405..18954474	CG4637-RA,CG4637-RB,	FBgn0004644,	hh,	1	.
CG11231-RA	GGGCTCCAGAGAGGTCACGGGACCGATGTTCTGGAACACCACGTACAATAGTGTTCTAAGCCTTGCTC	68	+	chr4	820309	820377	820309..820377	CG11231-RA,	FBgn0039939,	CG11231,	1	.
CG12264-RA	CCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATCCGGCCACAAAATCTACGGCCCAAA	69	+	chr2L	12000516	12000585	12000516..12000585	CG12264-RA,	FBgn0032393,	CG12264,	1	.
CG7885-RA	TGTGCTTCGAGTATGATCCGGACAACTCCATGCGACACACTCTGTATCCCAAACCTGATGAGTGGCCAA	69	+	chr2L	13833970	13834039	13833970..13834039	CG7885-RA,	FBgn0026373,	RpII33,	1	.
CG2260-RA	GCTCTGGAGAGCCCAACTTCGATGCTATGGAAGACAATCCGTATGAGACTTCGAAGCAACGACGCGAGC	69	-	chrX	8013620	8013689	8013620..8013689	CG2260-RA,	FBgn0030000,	CG2260,	1	.
CG8436-RA	CCGGCGAAGTAGAAGCGCTGTAGTGTACACTTCTGCCGACGAGAAGGATCATGACGAGGCTCCTAG	66	+	chr3R	5084990	5085056	5084990..5085056	CG8436-RA,	FBgn0037670,	CG8436,	1	.
CG12229-RA	CGCGTCTTTGAATGCCAACTATGTGGTTCTGCCCAAGATACGATGCAAGAGCTTTCTTCGTGCCGTGCG	69	-	chr3L	17428496	17428565	17428496..17428565	CG12229-RA,	FBgn0036723,	CG12229,	1	.
CG15570-RA	TGGTCCTTGCCGACATTCCCATTTTGAGCAGCATTACTAACCTTCTGGGAGTGACAGGACTAATCGGAA	69	+	chrX	4116310	4116379	4116310..4116379	CG15570-RA,	FBgn0029697,	CG15570,	1	.
CG7842-RA	GCCCTGAAAACGGTGCGACTTCAGGACCCCGTCATTAGAGTGTACTCCAATGTGGATGGCAAACCCTAT	69	+	chr3L	17029662	17029731	17029662..17029731	CG7842-RA,	FBgn0036691,	beg,	1	.
CG18345-RB	TGCTCTTTCGCAATTCCGAAACCGAGAGCTTCCATTGTGTCCCAGCAAGCTGATAGCGAACTCGG	65	+	chr2R	5652568	5652633	5652568..5652633	CG18345-RA,CG18345-RB,CG18345-RD,	FBgn0005614,	trpl,	1	.
CG17142-RA	ACAGGCGAACAGACAAGCAACCCGACTGTGACTGATTGGAAGCAAGAGATTCTGAGTTTTTTGGGGTCA	69	-	chr3L	218051	218120	218051..218120	CG17142-RA,CG17142-RB,	FBgn0035113,	pyx,	1	.
CG31742-RA	CAAGGAAACTGGAGGAATGTGGCCAATAAAGACTGCCAGGAACTGCATGAACAGTACTCAGGTGTGGGA	69	+	chr2L	17991251	17991320	17991251..17991320	CG31742-RA,	FBgn0051742,	CG31742,	1	.
CG3782-RA	TGGAGAAGCCGGATGCATTAGCAGCAGAATCGTCGGTCGAACACAAGGATTCGGATATCGAAGCGCTTA	69	+	chr2L	4975024	4975093	4975024..4975093	CG3782-RA,	FBgn0031660,	mRpL28,	1	.
CG3735-RA	CGGAGACATCCGGAACGTTCTGACTCCAATACATCAGGTTTTCCGCCTAATCAATTGCTCCAGTGTGGA	69	-	chr2R	19825507	19825576	19825507..19825576	CG3735-RA,	FBgn0034933,	CG3735,	1	.
CG13896-RA	ACGAAGAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATGATCCATGATAATTTCAGGGCCA	69	-	chr3L	711018	711087	711018..711087	CG13896-RA,CG13896-RB,	FBgn0035159,	CG13896,	1	.
CG14777-RB	CGTATTTGTTACCTTTTGTGACTCCCAATTGTTAGGCCAATTGTTGAATTAGATAGCGGTAGCGT	65	+	chrX	1362660	1362725	1362660..1362725	CG14777-RB,CG14777-RC,	FBgn0026872,	CG14777,	1	.
CG2679-RA	TGCCGCACGCTATAACTGCCAGTCATCAGGTGACCGACGTCTAAAATATCGTCAACTACCCACGAACAA	69	-	chr2R	20962415	20962484	20962415..20962484	CG2679-RC,CG2679-RE,	FBgn0004919,	gol,	1	.
CG8905-RA	TAAAATCTGATATCGGGACTTAGCCTTATTAGCAGTCGAATAAAACGCAGATATGTTCGTGGCCC	65	-	chr2R	12661281	12661346	12661281..12661346	CG8905-RA,	FBgn0010213,	Sod2,	1	.
CG18135-RD	TGAGGTTCAAGCAGAACGTCTTCCCAGTGATGTTCCTCACGCAGGGAGAGACGAAGAAGTGGCAG	65	-	chr3L	18984253	18984318	18984253..18984318	CG18135-RA,CG18135-RB,CG18135-RC,CG18135-RD,	FBgn0036837,	CG18135,	1	.
CG10320-RA	ACGCGTAGGGGTTTTCACTAAAGCTAAAGTAGTCCTCCGATCAGTTAATGCGCGGCTTGAGCTCGTCGT	69	+	chr2R	17546307	17546376	17546307..17546376	,CG9862-RA	,FBgn0034646	,Rae1	1	.
CG15149-RA	CGATGTATCCGGCATGATTCAGCCCGTTCGTAAAATAGTCTTGATTGTAAACGATTCAACGCCGGAGCA	69	+	chr2L	18008142	18008211	18008142..18008211	CG42635-RA,CG42634-RA,	FBgn0261358,FBgn0261357,	CG42635,CG42634,	2	.
CG13389-RA	GCCCTGGTTGCCTAAGTTCTTGATTCGCTAGTTGGTAGTTTGTTTTCAAGTCTTGCGGGGTCCTACATT	69	-	chr2L	8363766	8363835	8363766..8363835	CG13389-RA,CG13389-RB,	FBgn0010265,	RpS13,	1	.
CG7716-RA	CGGAGGTCCTGAATCTCTACGGCTACGAGGCATTAGCTCTTGGCTATGAAACAAAATGGCCACTAAGCT	69	-	chr3L	7582448	7582517	7582448..7582517	CG7716-RA,	FBgn0035800,	CG7716,	1	.
CG16904-RA	CGCAGGATCATGAGCTAAAGTCCACGGAAAGGACACTGTCGTACATGTACCATCTGAACAAGGTGCTCG	69	-	chr3R	5642264	5642333	5642264..5642333	CG16904-RA,	FBgn0037763,	CG16904,	1	.
CG4166-RA	GCACCAGAAGGACACGTGGGTCAAGTGCGATGATCATGTGATAACGATGGCATCGCTCAAGCAGG	65	-	chr3L	18612492	18612557	18612492..18612557	CG4166-RB,	FBgn0013717,	not,	1	.
CG15231-RA	TCTAGTGAACAGAGTACAAAAGTCAAAAGTACAAAAAGTCACTTCAAAGTCAGTGCAAATTTCGTCATT	69	-	chr2R	16756368	16756437	16756368..16756437	CG15231-RA,	FBgn0040653,	IM4,	1	.
CG16992-RA	GGGCCTGGGAGGATAGACCTGACAAACTGAATTGGATTCCCGGTGTTGGCTTATATCGATGCTGGATAA	69	+	chr3L	7480309	7480378	7480309..7480378	CG16992-RA,	FBgn0035789,	mthl6,	1	.
CG17146-RB	CTCGAAGGGATTCCTCATCGATGGATATCCGCGTCAGAAGAACCAGGGCATTGAGTTCGAGGCGC	65	-	chr3L	12194005	12194070	12194005..12194070	CG17146-RA,CG17146-RB,	FBgn0022709,	Adk1,	1	.
CG8455-RA	CAAGCAGTTCCAGGAATATGTGTGGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGC	65	+	chr2L	8199353	8199418	8199353..8199418	CG8455-RA,CG8455-RB,	FBgn0031997,	CG8455,	1	.
CG4193-RA	ATTCGATGTTATGTGTATGCTCATGTGATGTTTAGCTTGTAAGCGCGAGATGTGGGTAGCAGGAG	65	+	chrX	5206920	5206985	5206920..5206985	CG4193-RA,	FBgn0011761,	dhd,	1	.
CG3799-RA	GGCAAGCGCCTGACGAAGATCAGCATATACGCCTTCCTCTTTTCGGATCTTCTGTTGCTGTGCAAACGT	69	+	chr3L	16986498	16986567	16986498..16986567	CG3799-RB,CG3799-RC,CG3799-RA,CG42665-RD,CG42665-RE,	FBgn0261547,	Exn,	1	.
CG31267-RA	CCACCACCTATAATCACTGGGGATCGGAGGGCTGGATATACTCCGTGGAGGATATCGTCATGCACTGCA	69	+	chr3R	12960405	12960474	12960405..12960474	CG31267-RA,	FBgn0051267,	CG31267,	1	.
CG12917-RA	GCAGCGCTTGGAAACAGTTCCATCCGGTGTCACTCTACTCGTGTACTGCAGTCCCTCGGTTTTCAAAGA	69	+	chr2R	6025542	6025611	6025542..6025611	CG12917-RB,	FBgn0033490,	CG12917,	1	.
CG5838-RA	AGCACTTCCCCTGGACACTGTACGAAACATTGAAGTTCTTTGCCGAGTCCATATCTTGGTCCGAGGACA	69	-	chr2L	9965431	9965500	9965431..9965500	CG5838-RA,	FBgn0015664,	Dref,	1	.
CG2727-RC	CCTGCCCTTGGTGTTTGAGAAAGAAGTAATGACTTCAAACGAGGTGCCTGGATACCGGTTCACCCCACC	69	-	chr2R	20865334	20865403	20865334..20865403	CG2727-RC,CG2727-RB,CG2727-RA,	FBgn0010435,	emp,	1	.
CG10175-RB	GGGTGACCCGCGAGATAAGATCCTTCTACTTGGGAAGCAAGCATGTGGGCATTGAATCAGTGGACGAGA	69	-	chr3R	19349397	19349466	19349397..19349466	CG10175-RB,CG10175-RC,CG10175-RA,	FBgn0039084,	CG10175,	1	.
CG18377-RA	TCCCCATTTGGTTGTTTCAAACGATCCCGCATATTTCCCAGAACCCAAGCGTTTTCTGCCCGAGC	65	-	chr2R	6337952	6338017	6337952..6338017	CG18377-RA,CG18377-RC,CG18377-RD,CG18377-RE,	FBgn0033524,	Cyp49a1,	1	.
CG33051-RA	GGCCGAATCTGCTGACCAAGAAGACAAACATCGAGGACAGACTGAAGGTTCTGGAGCAGAAAGAACTGA	69	-	chr3L	17419595	17419664	17419595..17419664	CG33051-RA,	FBgn0053051,	CG33051,	1	.
CG9879-RA	TTTGGGCGTGAGATTTGCCGTCTTTCCCACAGGATTCGTTTTGGTCCTTCACTCGACCAGTCACTG	66	+	chr2L	2665960	2666026	2665960..2666026	CG9879-RA,	FBgn0031444,	CG9879,	1	.
CG2555-RA	TCCAGGGATCCTACTCATACACTGGGGATGATGGCAAGCAGTACACGGTGAACTACACGGCCGATAAGA	69	+	chrX	12447731	12447800	12447731..12447800	CG2555-RA,	FBgn0030398,	Cpr11B,	1	.
CG13652-RA	GGCCCAGTGTCCGTTGCACAAGCAGCTAGAAGGGGGACAGTTCTACAACTACAACTACCACTTCCAC	67	+	chr3R	20986775	20986842	20986775..20986842				0	no match
CG32436-RA	TTCACGCCCAATGGAAGCTATGCCATCTACCACGACGAGTTCTTTCACGTCTTTGATCCCTACGGCAGT	69	+	chr3L	21346807	21346876	21346807..21346876	CG32436-RA,	FBgn0052436,	CG32436,	1	.
CG12907-RA	CCCCCAAACGGACATGTCAAGGAGCAGGATGTTTTCCCCCAAAATTCTCATCGAATCCATATCGTTTCT	69	+	chr2R	6241420	6241489	6241420..6241489	CG12907-RA,CG12907-RB,	FBgn0250840,	CG12907,	1	.
CG6331-RA	CGACGGAAAACCCTGCTCATCTTCTTCGATTGGTTTGTGAACAGTGGCGTTTACTACGGCCTGTCGTGG	69	+	chr3R	20103668	20103737	20103668..20103737	CG6331-RA,	FBgn0019952,	Orct,	1	.
CG6735-RA	AGTGAAGCCATATCGAAGACACTCTGCAAGCATGAAAGCATCAAGGATGTTGGACAAGCGATCCATTTT	69	-	chr3L	15059643	15059712	15059643..15059712	CG33957-RC,CG33957-RD,CG33957-RE,CG33957-RF,	FBgn0086690,	cp309,	1	.
CG16953-RA	GGCCAAAATGTGGAGTAACAAGCATCCATTGGACCGCAATCAGTTCCAGGATTTGGGAACGCAACTGCA	69	-	chr3R	16407789	16407858	16407789..16407858	CG16953-RB,	FBgn0038809,	CG16953,	1	.
CG41041-RA	GATGTGTCAAGCTGAGACGGATTGCGGCCGGTTCCCTTTGGAGATCTAGTGCAGAAAGGCAAAGG	65	-	chrU	403129	403699	403129..403164,403669..403699				0	no match
CG32443-RA	ATACCAAAACCGTGCAACAACCTGGCTATCAACCAGAAACAGCCGCTTACTCCTCTTTCGCCGCG	65	-	chr3L	21309692	21309757	21309692..21309757	CG32443-RA,	FBgn0003042,	Pc,	1	.
CG14043-RA	GGGACTGGAAATTCTCCTGGAGGCAGAAAAAATCTACGAGGACTTCAAAGCCAGTGGTCTGAAGCCCCT	69	+	chr2L	4972230	4972299	4972230..4972299	CG14043-RA,	FBgn0031659,	CG14043,	1	.
CG13125-RA	AGGGCATGAGGACTACTCACACATCGCGAGTGGATAAACGTGAAGATCGCCTAGCTCAACGCAGCAG	67	-	chr2L	9923001	9923068	9923001..9923068	CG13125-RA,	FBgn0032163,	CG13125,	1	.
CG12184-RA	AGCTTTGTTATTTTTCTATATATTTTAATCGATCACAATTGTTTAAGTCCAGTCCATACGTAATGTTAA	69	-	chrX	4521535	4521604	4521535..4521604	CG12184-RA,	FBgn0025387,	CG12184,	1	.
CG2374-RA	GCAGCGACGGATGGAGTTCTAGTTCTAGGCCTTCGGTAATCTCGAGCTATCCAACAGTACAAACTCGGA	69	+	chr2R	2939230	2939299	2939230..2939299	CG2374-RA,	FBgn0016032,	lbm,	1	.
CG8159-RA	GTTCAGCTGTCACCATCCCAGTCAGCGGATCAGGTCAAATTCGTGACGGAAAAGGAGCCAGAAGC	65	+	chr3R	4553861	4553926	4553861..4553926	CG8159-RB,	FBgn0037619,	CG8159,	1	.
CG11849-RA	GGCCACCCTACTCAGCTCCCTGTTCTTCCCTCCCTACGAATTTGTACATTGTGACCTCGACGATGACC	68	+	chr3R	21017876	21017944	21017876..21017944	CG11849-RA,	FBgn0039286,	dan,	1	.
CG10341-RA	GTGGTCCAGGGAAGTCCATCGGAAGAATCCAAAAAAGTTGCCTCTGACGCTTCTGCTACTGTGACCGC	68	+	chr2L	18699217	18699285	18699217..18699285	CG10341-RA,	FBgn0032701,	CG10341,	1	.
CG7654-RA	AGTATCGACGACCTCGAATAGTACTTGGAGATGGCTACAGAAATTGAGATATAAATTTCAACAGTAGAA	69	+	chr3L	19995238	19995307	19995238..19995307	CG7654-RA,	FBgn0036928,	Tom20,	1	.
CG10229-RA	GCGAATGGCTAGCGATTGTAGGAGTATATTTTTGAATAGCCTTAAACACGCGCTTAAGTCATTAAGCTT	69	-	chr3R	1053631	1053700	1053631..1053700	CG10229-RA,	FBgn0040208,	katanin-60,	1	.
CG13244-RA	TGCACTGTCACTATTTAGGCGTCTGTCCAATCTGCGCTCTGAGCTCATTTTCAGGAAGCGGGACATCAT	69	+	chr2L	15917194	15917263	15917194..15917263	CG13244-RA,	FBgn0032577,	CG13244,	1	.
CG8270-RA	TGCCCGGAGAGGTGATCAATGAAATAACCTATCATACACCCATAACTCCAGGGCGCTCCATCAAACCGT	69	+	chr3L	6482836	6482905	6482836..6482905	CG8270-RB,	FBgn0035703,	CG8270,	1	.
CG12068-RA	TCGCTGCTGGCAAAGTTTAAGGATGCATTGACCAGCTCACAACCCTTGGCTCTGTACATCGAGGAACC	68	+	chr3R	25621228	25621296	25621228..25621296	CG12068-RA,	FBgn0262112,	sro,	1	.
CG7248-RA	CAACAACCACAGAGAAGCCTTCACCGAATGGAATTTGTGCAGATAAGGCAGAGGGATCACTGGTGCCCT	69	+	chr3L	11949523	11949592	11949523..11949592	CG7248-RA,	FBgn0036229,	CG7248,	1	.
CG32403-RA	CTGCGTCACCTTCATCAGAGGTGCCATGGATATGAGCAGTTGAGATTGGAGACGAATCGCCTGGTCCAG	69	+	chr3L	6321550	6321619	6321550..6321619	CG32403-RA,	FBgn0041623,	Or65c,	1	.
CG14627-RA	CATCACAAACGGATCCGGCATTCAAGCCCTCGTACAAGATGCCCGAGATGGAGACCAACTTCACG	65	+	chrX	1076396	1076461	1076396..1076461	CG14627-RA,	FBgn0040361,	CG14627,	1	.
CG9737-RA	ACATTGCCATTATCCGGCTAAAGCATCCCGTGTCCTTCACTCACTTCGTCATGCCCATCTGTTTGCC	67	-	chr3R	26067940	26068007	26067940..26068007	CG9737-RA,	FBgn0039758,	CG9737,	1	.
CG12862-RB	CGCTACCTCCAATTAAGTCCCTCACCTCCTCATTAGCTTAGACCAGATAGCGGTAGACATGGACGACGG	69	-	chr2R	10527926	10527995	10527926..10527995				0	no match
CG12854-RA	GGGACATCGAAACGCACTACGATTTCTTCTTGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTA	69	-	chr2R	10657329	10657398	10657329..10657398	CG42254-RB,CG42254-RC,CG42254-RD,	FBgn0259112,	CG42254,	1	.
CG2286-RA	GCCTATGTGCACAACGAACTGCAGATTGCCTCGATTGGACCCAAGATCGATCTGTCCTACGACCACGAG	69	-	chrX	8143915	8143984	8143915..8143984	CG2286-RA,CG2286-RB,	FBgn0017566,	ND75,	1	.
CG8284-RA	CCGCGCCCCATTGAGCATGTGGTGTTATGTAATTGAACCCAGGTTCTGTTTCATTAATTTACGTGCAGT	69	+	chr3L	9693097	9693166	9693097..9693166	CG8284-RA,	FBgn0015321,	UbcD4,	1	.
CG13966-RA	CCCGTTTCGATACACACGAGCAACTTGCGTCTGAACATGATGAACCAGGATCCCAAGGACCTCCACACA	69	-	chr2L	19971492	19971561	19971492..19971561	CG13966-RA,CG13966-RB,	FBgn0032838,	CG13966,	1	.
CG5009-RA	AGCTGGGCATGAAGGGTGTCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTTTAAACAACA	69	+	chr2R	13650344	13650413	13650344..13650413	CG5009-RA,	FBgn0027572,	CG5009,	1	.
CG4609-RA	AACAAAAACGAAAAAAAACATCAAGAACACCCATTTACAAACCTAGGACAACTGTAAAGCAAAAGCAGG	69	-	chr3L	16397960	16398029	16397960..16398029	CG4609-RD,CG4609-RC,CG4609-RA,CG4609-RB,	FBgn0014163,	fax,	1	.
CG10173-RA	AAGTGGCTACGATCCTAACGATGTGATCACCACGATACCGGTGTCCTTGTCCATCCAGCGATCGC	65	-	chr3L	6240099	6240164	6240099..6240164	CG10173-RA,	FBgn0035696,	Best2,	1	.
CG5821-RA	GCCGAATCGAATGGACGCATTCAAGGTTGGTCCCAGTCGAGCCAAATGTCCTTGTTTTGTTTTGTCGCA	69	+	chr2R	18305511	18305580	18305511..18305580	CG5821-RA,	FBgn0022985,	qkr58E-2,	1	.
CG5792-RA	CCGAGGAGGAACTGATTGGCATACTGGAATCCACTACTCCTGGCTCCTATCGAGTGCCCATGAGCATCT	69	-	chr2L	12714134	12714203	12714134..12714203	CG5792-RA,	FBgn0032455,	CG5792,	1	.
CG15200-RA	TCCACGATTTTTTTCGAAATAAAACATCCAGCCATGTCGAACGGTTTTTCCTTCTGGAACGGACAGCCA	69	+	chrX	11077055	11077124	11077055..11077124	CG15200-RA,	FBgn0030278,	CG15200,	1	.
CG14752-RA	GAAAGTATTCATCTTCGTCGCCCTCTTCGCCGTGGCCTACTGCGCACCCAGTCCCGGCTTCTTTG	65	+	chr2R	4478085	4478582	4478085..4478095,4478527..4478582	CG14752-RA,	FBgn0033307,	CG14752,	1	.
CG6254-RA	CCACCTCGGGAACACTGAAGCGACACATAGAAGGCATCCACAACCAAATAAAGCCCTATGTGTGCGACC	69	-	chr3R	5985652	5985721	5985652..5985721	CG6254-RA,	FBgn0037794,	CG6254,	1	.
CG10991-RA	GGAGCCGTCGACACAGAGATCATTGATGAGAAAATCAATAAGGTCATTCCAAACTTTCCCATGCTGCGC	69	+	chr3R	1675007	1675076	1675007..1675076	CR10991-RB,CR10991-RC,	FBgn0037389,	CR10991,	1	.
CG7897-RA	AGTGCGTGTCACCGACCTAAAGCCACATGAAATTCATATAAGCGGACTAGACAAGGCGTTGCTCAAGGT	69	+	chr2R	1655492	1655561	1655492..1655561	CG7897-RA,	FBgn0033039,	gp210,	1	.
CG1569-RA	TGCTACAGAAGTGGCTCGCTCTGACTATGGAGTCTGCGGGTGATGGTACCATTTTGGAGGAGACCTTCA	69	+	chr3R	27412742	27412811	27412742..27412811	CG1569-RA,	FBgn0003268,	rod,	1	.
CG7131-RA	GCCGGCATTTGTTAGCCTGGAAATACATTATGGTTGCTCTGAAGAATCCGTCTCCCAAGCTCATCCCGA	69	-	chr3R	14112632	14112701	14112632..14112701	CG7131-RA,CG7131-RC,	FBgn0038598,	CG7131,	1	.
CG10260-RB	TGTCATCCGCAATTCGTACCAGAACTTCCGCACGCGTACCTACGACATGATCCAGTACTACCAGAACCA	69	+	chrX	2527248	2527317	2527248..2527317	CG10260-RC,	FBgn0261922,	PI4KIIIalpha,	1	.
CG17032-RA	GGGCGCCACTATCGAGGAAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTAATCCGCAGGT	69	+	chr3L	15952794	15952863	15952794..15952863	CG17032-RA,	FBgn0036547,	CG17032,	1	.
CG31776-RA	CCCATTTTGGATGCCATCTCACGCAAGACATTTGCCTATGCCAAACAAAATACGATGACTCGCTCCGGT	69	+	chr2L	3471187	3471256	3471187..3471256	CG31776-RA,	FBgn0051776,	CG31776,	1	.
CG5930-RA	GCGAAGACGATGTCACCGACGAAGACTCTGCCGAAATGTTTGACACAGATAACGTGATTGTTTGTCAGT	69	+	chr3R	23081615	23081684	23081615..23081684	CG5930-RC,CG5930-RA,CG5930-RB,	FBgn0011289,	TfIIA-L,	1	.
CG15867-RA	GACGCTTGGAGGCAGACCGCTGGATAAACGGACCGCTGAACAGCTACGGCAAGGTGAGTGTCTAA	65	+	chr2L	8916000	8916065	8916000..8916065				0	no match
CG16894-RA	ACATCTATGCCATACCCAGTTACGCTTGTGGATTGCACTGGTTCGGCGTCATCTTTGTGCACAGTGGAA	69	-	chr2R	16099825	16099894	16099825..16099894	CG16894-RA,	FBgn0034483,	CG16894,	1	.
CG4891-RA	TGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGGTACTTTCAGCGCTACGGACTAGCCCCACA	69	+	chr2L	16095079	16095148	16095079..16095148	CG4891-RA,	FBgn0028520,	CG4891,	1	.
CG3839-RA	TCGAGGACTACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACAATTCCGCCGA	69	+	chrX	304253	304322	304253..304322	CG3839-RA,	FBgn0002561,	l(1)sc,	1	.
CG33128-RA	GAGGGCAGCAGAATATCTTTCGTTAGAAAAGCTCAGAGTACTCATTAAATCATAATGCTGAAGTGGCTG	69	+	chr2L	1494091	1494160	1494091..1494160	CG33128-RA,	FBgn0053128,	CG33128,	1	.
CG11908-RA	GCTTACACCCTCCGAGGAACCTTCTTCGCAGTCTGAATCTCGAGGGACTGATAATGCAAATCCTATCAC	69	+	chr3R	21169039	21169108	21169039..21169108	CG11908-RA,	FBgn0027376,	rha,	1	.
CG11756-RA	CGTCGCTTGCAATTATTTTAAATTCTTAGTAAACTTTCTTGGAAAATGCTTAAATATTTGGCTGGAATT	69	+	chrX	11242192	11242261	11242192..11242261	CG11756-RA,	FBgn0030290,	CG11756,	1	.
CG14983-RA	CCAGAACAGCGACTAGCCCAACTGGAATCGGTCACATCACGGATGCATCTATACCATTCAAGGCGCG	67	-	chr3L	3949129	3949196	3949129..3949196	CG14983-RA,	FBgn0035479,	CG14983,	1	.
CG11537-RA	AGATGGGCTTTAACTATGTGGAGGTCTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCATCACGGTGC	69	-	chr3L	3130263	3130332	3130263..3130332	CG11537-RC,CG11537-RB,CG11537-RA,CG11537-RD,CG11537-RE,	FBgn0035400,	CG11537,	1	.
CG6930-RA	CGGCTCCTGAGGATCGTACAAGGACTTCTGGTAAACTCCCAGCCGAATTTCAAGCCATAAGGGGCG	66	-	chr3R	7594505	7594571	7594505..7594571	CG6930-RE,CG6930-RF,CG6930-RG,CG6930-RH,CG6930-RI,CG6930-RJ,CG6930-RK,CG6930-RA,CG6930-RB,CG6930-RC,CG6930-RD,	FBgn0086910,	l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,l(3)neo38,	1	.
CG11878-RA	GGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTACTTCAAGGATAGCTCACTGAAGCTGGCGA	69	+	chr3R	21099612	21099681	21099612..21099681	CG11878-RA,	FBgn0039310,	CG11878,	1	.
CG3780-RA	GTACACATGCCCAAGGATCGTGTCACCCAAATGCACCAGGGCTATGGATTCGTCGAGTTCCTCAG	65	+	chrX	6150198	6150263	6150198..6150263	CG3780-RA,	FBgn0015818,	Spx,	1	.
CG2103-RB	CGCTTGGCCACATAACAATTTACCCCGACTCAAGCGCACATATGCAACAGAGGATGCAACAGAGAGTAT	69	+	chr3L	2785738	2785807	2785738..2785807	CG2103-RA,CG2103-RB,	FBgn0035375,	pgant6,	1	.
CG14616-RC	ACTCTAACCGCCTCAAATCAGACAGAGGTTGTCGAACATGAGCCGATATCAACGACCGTAACGCCCA	67	+	chrX	21905377	21905444	21905377..21905444	CG14616-RG,CG14616-RH,CG14616-RI,CG14616-RJ,CG14616-RK,	FBgn0027279,	l(1)G0196,l(1)G0196,l(1)G0196,l(1)G0196,l(1)G0196,	1	.
CG15753-RA	CAATGCATGCGACATGGGCTGTCAGACGAGGGAATCGCTGTTTGTCAACAGTCCCGGAATTGGAC	65	+	chrX	13415186	13416821	13415186..13415216,13416786..13416821	CG15753-RB,	FBgn0030491,	CG15753,	1	.
CG11719-RA	TCGCCGTTCTGCTCAAACACCACCAAAAAAGTCTACAGTTCTCTATACTTTGTCAACGCATGGACGACT	69	+	chr3R	24118276	24118345	24118276..24118345	CG11719-RA,	FBgn0002865,	Mst98Ca,	1	.
CG11822-RB	CGGCCTACTGCGAACTCAACATGCTCAACTGGCCCCACGACAAGCAGAGCTGCAAGTTGAAGATC	65	+	chr2L	546008	546073	546008..546073	CG11822-RA,CG11822-RB,	FBgn0031261,	nAcRbeta-21C,	1	.
CG31560-RA	TGAGGAGACCGTCCAAGGATAAAGTGGATGACCAAATCGCAATGGGCTTCAATGGGATGATGGGCGAAA	69	+	chr3R	2136265	2136334	2136265..2136334	CG31560-RA,	FBgn0051560,	CG31560,	1	.
CG30061-RA	CAGACCATGGATCTGTGGACGATCCCGATGGATGTTTGCGGAACCATTTGGGATCATCGGCTAGC	65	-	chr2R	9324194	9324259	9324194..9324259	CG42321-RG,CG42321-RH,CG42321-RQ,	FBgn0259221,	CG42321,	1	.
CG17292-RA	TTCAATCACCATTGAATTAGTCCTCAAGTGCATAATGGGATTAGCGTTCGATTAAACTTGTTCAGCCGA	69	+	chr2L	8372131	8372200	8372131..8372200	CG17292-RA,	FBgn0032029,	CG17292,	1	.
CG6232-RA	ACCGCCTGTCTGGTCCTTCGGAATCCTCATCGAATAGCAGCCAAGTGAAGAGGAGCAAAATCGATG	66	+	chr2L	10448844	10448910	10448844..10448910	CG6232-RA,CG6232-RB,CG6232-RC,	FBgn0032252,	CG6232,	1	.
CG17283-RA	GCCATGACCACCAAGGAACCGGGAACCACTTTCGTGACCTCAAATTTCGATGGTATACTAGGGCTGGGA	69	+	chr3R	13234314	13234383	13234314..13234383	CG17283-RA,	FBgn0038505,	CG17283,	1	.
CG15279-RA	GGGCACAATGTACACAGGGATGCAGCAATTGTAACGGGTCTGGACACTATGACCTCTCTGCTAGCTGGA	69	-	chr2L	14846067	14846136	14846067..14846136	CG15279-RB,CG15279-RA,CG15279-RD,	FBgn0028886,	CG15279,	1	.
CG10418-RA	CGGATATCAGTGTCACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCATCCGTG	69	+	chr3L	12330059	12330128	12330059..12330128	CG10418-RA,	FBgn0036277,	CG10418,	1	.
CG9045-RE	CGTCGAACGCAGATCGGTTAATGCATCTGGTAGCGATTTGAAGAGTTCGCGAACCCATCTCATCACGCT	69	-	chrX	15750355	15750424	15750355..15750424	CG9045-RA,CG9045-RB,CG9045-RD,CG9045-RC,CG9045-RE,	FBgn0002914,	Myb,	1	.
CG31549-RA	TCCAGTGATCGAACTTCGCTTAGCGTAAAAGAAACACCCCACGATGTCATCCTTCAAGGACAAAGTGAT	69	+	chr3R	1458074	1458143	1458074..1458143	CG31549-RA,	FBgn0051549,	CG31549,	1	.
CG15596-RA	GCTGCGGACAGTGCGTCATATCTATGGGCAGTGTGCATATAGCGAGGACGTTTTCTGGTGCTGCAAG	67	-	chr3R	2094236	2094303	2094236..2094303	CG15596-RA,	FBgn0037418,	Osi11,	1	.
CG11864-RA	GCTGCTTGCCGGATTTTATCAGGGGGACATAAAAGCTCATCCAATTCGTACTCGAAACGGAATTGTCAA	69	-	chr2L	15613183	15613252	15613183..15613252	CG11864-RA,	FBgn0028944,	CG11864,	1	.
CG31453-RA	CCCAGCTGGATTCCCTTAAGACTTGTCCCAACGTACTGATCCTGGCCACATCTAACCTGGCTCAAAGCA	69	-	chr3R	4386385	4386454	4386385..4386454	CG31453-RA,	FBgn0051453,	pch2,	1	.
CG32178-RA	ACCGCCGTTTCTCAAACATCTGAACATCATCGATACGAATCTTTATGCGGCACTTAAGAGCATGCCCAA	69	-	chr3L	17749470	17749539	17749470..17749539	CG32178-RA,CG32178-RB,CG32178-RC,	FBgn0043025,	Msi,	1	.
CG7375-RA	CGAACTGAACCTGCCAAACACTTGCGCCACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCT	69	-	chr3L	8190467	8190536	8190467..8190536	CG7375-RA,	FBgn0035853,	CG7375,	1	.
CG10469-RA	ACCGGAGCTACACCATCGTCCACAAGAAGTTCGACCGTAAGACCGTGACAAACGATATAGCCCTGATCA	69	-	chr3L	6085759	6085828	6085759..6085828	CG10469-RA,	FBgn0035678,	CG10469,	1	.
CG30499-RA	CGAAATGTTTTGACCAAATTGCATTGCAAGTAATGGGGAAAATTCCTCGGGAAATGGTACCATTA	65	-	chr2R	3451956	3452021	3451956..3452021	CG30499-RA,	FBgn0050499,	CG30499,	1	.
CG5968-RA	TTGATGTCTGAGATGGAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAAGAAA	69	-	chr2L	16549542	16549611	16549542..16549611	CG5968-RA,	FBgn0032588,	CG5968,	1	.
CG15323-RA	AAGGACCTGAAAGATCTGATTGCCCTGAATGAGAAGGAATGTAATAGGCTGTTATTCGATCGCCT	65	-	chrX	20004270	20004335	20004270..20004335	CG15323-RA,	FBgn0040784,	CG15323,	1	.
CG7294-RA	GGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGGAGGTGGTCCATACGGCGGGGGATTCGGTAAT	69	-	chr2L	10688989	10689058	10688989..10689058	CG7294-RA,	FBgn0032284,	CG7294,	1	.
CG4064-RA	CGCACCCTAGATCGGTATATGCAAAAGAGGGCGGATAGATACTACAACAATTGCACCCAAACTGAGCCA	69	+	chrX	5679538	5679607	5679538..5679607	CG42699-RC,	FBgn0261610,	CG42699,	1	.
CG6742-RA	GCTGCATACGACCTCTCCTCCAGTGACGGAAAGAAGGCTCTGGACATTGCAGTGGACCAGGAAAAC	66	+	chr3R	18949026	18949092	18949026..18949092	CG6742-RA,CG6742-RB,CG6742-RC,	FBgn0039056,	cenB1A,	1	.
CG15660-RA	GGGAGTCCTGGGACCTGGGAACACGCACATCATCTTGGGGACACACGATACACGAGACGGCATAA	65	+	chr2R	17159937	17160002	17159937..17160002				0	no match
CG14505-RA	GGCACTCTCCGGACCTTTTGTAGCGAAAAAAGTTAACAAGTTTTTGTGCCGTTCCACTTGACTGCC	66	-	chr2R	14190796	14190862	14190796..14190862	CG14505-RC,CG14505-RB,	FBgn0034327,	CG14505,	1	.
CG12102-RA	CTGGCCAGGACACCTTGGATCCGCTAAGGGAGCTTTGCTATCCGGATAGCGATGTTTTCCTGCTC	65	+	chrX	10040506	10040571	10040506..10040571	CG34104-RB,	FBgn0083940,	CG34104,	1	.
CG2114-RA	CGCCTGAGTCGTGACCAACCGGATCTTATCCACTACGAGAGCTCCATATCGAACAACGGCGATGGAACT	69	+	chr3L	3009978	3010047	3009978..3010047	CG2114-RA,	FBgn0035385,	FR,	1	.
CG15848-RA	TTTCTGGACCAAAATGATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGATTGC	69	-	chr2RHet	1738105	1738174	1738105..1738174	CG15848-RA,	FBgn0020908,	Scp1,	1	.
CG13590-RA	GGCCAAGATCATCTGGTACATGATCCGGAACGTGTCCACCATCAACCACACCTGTCCCTATGAGGG	66	.	.	.	.	.	CG13590-RA,	FBgn0035012,	CG13590,	1	.
CG9187-RA	TGCCCATTGATCTAACCAACAATCTGCGTCCGCCCAAGTCACTTTACATCGAGGTGCGCTGCATG	65	-	chr3L	1247194	1247259	1247194..1247259	CG9187-RA,	FBgn0035194,	Psf1,	1	.
CG5038-RA	TGGAGCCCCACAACACATTGTACCACACGAATCTCGGAGTTCTCTATCATCGCTGGGACAAGACGCAG	68	+	chr3R	11178999	11179067	11178999..11179067	CG5038-RA,	FBgn0038324,	CG5038,	1	.
CG31637-RA	AGCAACTGGGTGCATTGTGCATTGTGAAAAACTCATTCATAGCGGGCACATTTTTGCTACACACGCAGA	69	+	chr2L	6526170	6526239	6526170..6526239	CG31637-RA,	FBgn0051637,	CG31637,	1	.
CG10523-RB	CGGAGTGTTGGGATGATGTCTTGAAGTCGCGTAGAATTCCCGGTCATTGTGAAAGTCTGGAGGTGGCCT	69	-	chr3L	21189025	21189094	21189025..21189094	CG10523-RB,CG10523-RC,	FBgn0041100,	park,	1	.
CG8705-RA	GCAGCACGGACAATGTGGATGGCAAGAAGGAGAAGAAAAAGAAGGGTCTGTTCTAAGTCAACACGCTCA	69	+	chr2R	4127125	4127194	4127125..4127194	CG8705-RB,CG8705-RA,	FBgn0013726,	pnut,	1	.
CG13137-RA	GGAGCCGGACTGTCAGCAAAAGATACGTTTGATACCGAATCCGAAGAGTTTAGGCTCCTTCTCCCTACT	69	+	chr2L	10173380	10173449	10173380..10173449	CG13137-RB,	FBgn0032188,	CG13137,	1	.
CG13121-RA	CCTGTTCCGAGAGTTTCTGCGTCAGAGTTACATCAATGGTCTGCATCCGTTTCTCTATCATACACCCGT	69	-	chr2L	9770895	9770964	9770895..9770964	CG13121-RA,	FBgn0032145,	CG13121,	1	.
CG8765-RA	TCAACTGCGGAGTTCCAGAAGATCGAGATACAGACTCCAACCACGCCTAGGTACCAGAATGCTGCCACT	69	-	chr3L	19678168	19678237	19678168..19678237	CG8765-RA,CG8765-RB,	FBgn0036900,	CG8765,	1	.
CG11517-RA	GCTGCAAGTGCCCCACTTTATTTTGTTAAGCGCCTTCGATGGCCAACAAACGAAAAGTCCTTTGAGCCA	69	+	chr3R	25256556	25256635	25256556..25256620,25256630..25256635				0	no match
CG1987-RA	AATGGCTCAACAGATTTCTGAAGTTTGACTCAATAAATTCGTCCCCCTCCATATAATAACCCCCC	65	-	chrX	13274766	13274831	13274766..13274831	CG1987-RA,	FBgn0030479,	Rbp1-like,	1	.
CG9655-RA	ACAAGCTGCTTTATTTCATCACCCTCAAGTCGTACAACGTTGTGTACATGGGCTGGTGCCTGACCGCAT	69	-	chr3L	19251328	19251397	19251328..19251397	CG9655-RA,CG9655-RB,CG9655-RC,	FBgn0026630,	nes,	1	.
CG31096-RA	CGGCGGTTAATCCTCTCTTGTACACCTTCACCACGCCCAAGTACCGAAATCAAATCTTCCTTCGCGGCT	69	+	chr3R	21502543	21502612	21502543..21502612	CG31096-RA,	FBgn0039354,	Lgr3,	1	.
CG13074-RA	GGCAACATCATCTTTTGCCCAGCCAATGATGGGTCACTGGAATACTATAGGGTGAGCGATGGAGCCCAT	69	-	chr3L	16089220	16089289	16089220..16089289	CG13074-RA,	FBgn0036567,	CG13074,	1	.
CG33348-RA	GTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGAATCTGGATGGGCGCTACAAGCT	69	+	chr2R	2837556	2837625	2837556..2837625	CG33348-RA,	FBgn0053348,	CheB42a,	1	.
CG9624-RA	GTAGCCCCTTCTTCGACGTGCTATGGCCATTGATCCTGGACGAGAATGTCTGTCGCATCGAGACC	65	-	chr3R	10054695	10054760	10054695..10054760	CG9624-RA,	FBgn0038213,	CG9624,	1	.
CG9709-RA	CCCCGCACTGAACAAGATATTGGAGAACGTGCTGGAACTATTTCTGGTCCAAACGGTGCTTAATAACCT	69	+	chr2R	17279415	17279484	17279415..17279484	CG9709-RA,	FBgn0034629,	Acox57D-d,	1	.
CG16755-RA	TCTTCATCGGGACTTCTGTGATGCAGGTCTACCTGGTGTGCTATTACGGTCAGCAAGTTCTCGACTT	67	+	chr3R	5224881	5224948	5224881..5224948	CG16755-RA,	FBgn0037685,	Or85f,	1	.
CG3178-RA	CCCAAGAAACGCGCCAAGAAAACAACCAATGGTGAGACTGCGGTAGAACTTGAGCCAAAGACCAAGGC	68	-	chr2L	2971386	2971454	2971386..2971454	CG3178-RA,CG3178-RB,	FBgn0004584,	Rrp1,	1	.
CG40133-RA	ACAATAGCGACTCGTCAGGGGAAGACATAATTCAGGAGTATAAAAATCTGCTAGCAACAAGGAGT	65	.	.	.	.	.				0	no match
CG10363-RA	TGCATTGGACACTCGCATCAAGAGGAATCTGCAGGACGGATACCAACATATGTTGCACTATCGCCACGA	69	+	chr2L	19554900	19554969	19554900..19554969	CG10363-RA,	FBgn0041180,	TepIV,	1	.
CG1409-RA	GGTCAGAAGAGCCGATGATCCTTCGCAGCTGTATTCACATGGATTGCCTTTTAGTAGCGTGGCATAAAA	69	+	chrX	7752697	7752766	7752697..7752766	CG1409-RB,	FBgn0029964,	CG1409,	1	.
CG13084-RA	GCCACATGACCAGCCTGAATCCTACAAGCTTCCTGTGGATTACAGTCCCAAACCTAACCACGAGCAACC	69	+	chr2L	19486206	19486275	19486206..19486275	CG13084-RA,	FBgn0032788,	CG13084,	1	.
CG9075-RB_00001-00239	CGCTTGTCGCTCAAAAAGGCTGCCTAGCTATCGCTTTCGGTCTCATACGTAAAGTCACCGCTTCGCAGA	69	+	chr2L	5982556	5982625	5982556..5982625	CG9075-RB,CG9075-RD,	FBgn0001942,	eIF-4a,	1	.
CG15226-RA	CCTGGGGTCAGTCCTTCAGTTTTCCCGTCTACACCGTGGGAAGCATAGTCTCGGCTCTAACAGGAG	66	-	chr2R	16676564	16676630	16676564..16676630	CG15226-RA,	FBgn0034550,	CG15226,	1	.
CG33171-RE	CGGCGAAAGTGAAAGTAGGGAGTTCAAGACGGCCGATGAGTATGCAGCGCATTTAGAAAATTTACTGCT	69	+	chr3L	7045079	7045148	7045079..7045148	CG42543-RB,CG42543-RE,CG42543-RF,CG42543-RG,CG42543-RH,CG42543-RI,CG42543-RJ,CG42543-RL,CG42543-RM,CG42543-RN,CG42543-RP,CG42543-RO,	FBgn0260660,	mp,	1	.
CG9759-RA	ACACACAGGGTAGATAGACGACCAGACCTAGAGACAGACGGCTACTCGTACTACAGCTACAGCCACAAA	69	-	chr3R	9433142	9433211	9433142..9433211				0	no match
CG6081-RA	AGCAATGGAGGTGGTATGAAAAGTTACAGAGACAGGGGTGTTTACCTAGCTTTTGGCGATGGACCTCGT	69	+	chr2L	5208914	5208983	5208914..5208983	CG6081-RA,	FBgn0031688,	Cyp28d2,	1	.
CG2005-RC	CGGATGCAGACCGAGGATTTGGGAGCACACTTCAATATCCGATCGTATCAATCCAATCATTTGTCAGCT	69	+	chr3R	25311728	25311797	25311728..25311797	CG11516-RA,CG11516-RC,CG11516-RF,CG11516-RG,	FBgn0004369,	Ptp99A,	1	.
CG32775-RA	CCACTCCGCTGGTCAGAAACCTTTTGGATAGAGCCGGATTGGAGAAGCGTTCCACGTTGCTGAACATC	68	+	chrX	4025655	4025723	4025655..4025723	CG32775-RA,	FBgn0066114,	GlcAT-I,	1	.
CG41119-RA	GCTTCTGCGTCTGGACATATACGACACAACCCACACCAATTTACTCGCATTTCGGAGTCGGGTCACACC	69	-	chr2L	22683623	22683692	22683623..22683692				0	no match
CG10531-RA	TGGCAAGTTCGATGTGTCCAATATCGATGCCGGTCTGTGCACCCATCTGAGCTACTCCTTCTTCGGAAT	69	-	chr2R	16956526	16956595	16956526..16956595	CG10531-RA,	FBgn0034582,	Cht9,	1	.
CG33494-RA	TCCTGGGACATCTTTCTGCTCAAATTACCGTGAGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCA	69	-	chr3R	21320012	21320081	21320012..21320081	CG33494-RA,	FBgn0053494,	CG33494,	1	.
CG11921-RA	CGAGGAGCTGACTGCCCTGGCGAACCTCAATAGATTCTTCTTTACCACCCGTAACGGAGGCAGTG	65	+	chr3R	20909632	20909697	20909632..20909697	CG11921-RA,	FBgn0004897,	fd96Ca,	1	.
CG7428-RA	GCTGCATCTCACGGACAACCTCATCCTGCAGACGATCAAGAACATCCGGCAGTATGACACCATCGAGAT	69	-	chr2L	1517861	1517930	1517861..1517930	CG7428-RA,CG7428-RB,	FBgn0001174,	halo,	1	.
CG33158-RB	CAGGGCGTTTGTTTTGCGGTTCTCGAGTGGTCTATCCAATCTGAAGGAGAGGATTTGAATTCCCGTGGC	69	+	chr3L	16415490	16415559	16415490..16415559	CG33158-RB,	FBgn0053158,	CG33158,	1	.
CG1148-RA	GGGACCGCTAAGCCATGTGAAAAGTGTGTCAGTTTTAAGTGGAGAGTCGATCCGTTAAGCCAATAAGCA	69	+	chr3R	2036954	2037023	2036954..2037023	CG1148-RA,	FBgn0037410,	Osi2,	1	.
CG3979-RA	TTGGCAATGCTCTGATTGGATTGAAGGTTCTGCCCAACTCTGTCCTCTTACTGGTGGTCATCCTG	65	-	chr3L	18822753	18822818	18822753..18822818	CG3979-RB,CG3979-RC,CG3979-RA,CG3979-RD,	FBgn0036816,	Indy,	1	.
CG11380-RA	GGGCTGAGGTCTGGATAAATGTTCAGATGTTCGAAGGCATGGAAACTCATTTGACCGAACGCACTATCT	69	+	chrX	1089980	1090049	1089980..1090049	CG11380-RA,	FBgn0040359,	CG11380,	1	.
CG6184-RA	GACACCTGTCGTCTGCGTTACAACGAGTCCACGATGCTGAAGCTCTACGGGATTGCCAGGCACAT	65	-	chr3R	15479692	15479757	15479692..15479757	CG6184-RA,CG6184-RC,CG6184-RD,	FBgn0038725,	CG6184,	1	.
CG15758-RB	GGTCGAGTGCCGAAAGTCGAGTGTCGATAGTCGAGTGGCAAACATTCAAAGTTGCACGATACCAGCGAA	69	+	chrX	13470248	13470317	13470248..13470317	CG32632-RB,	FBgn0086674,	Tango13,	1	.
CG14253-RA	GCCCTGTTGCGTCCCATCATTCACGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCGCTTC	69	+	chr3R	22810598	22810667	22810598..22810667	CG14253-RC,CG14253-RE,CG14253-RD,CG14253-RA,CG14253-RB,	FBgn0039467,	CG14253,	1	.
CG11765-RA	TCCGCACCACTGACAACTACTGACACAAAACCGTTCCCCATTTGTGATCCATTCAATAATGTGCCGTAT	69	+	chr2R	6307137	6307206	6307137..6307206	CG11765-RA,	FBgn0033518,	Prx2540-2,	1	.
CG9920-RA	TCGCGCCTGCTCTTATAGCTACCACTCACACTGCCATATCGTGTAAGGACAGGCCAAATAAACCACTGT	69	-	chr3R	9923034	9923103	9923034..9923103	CG9920-RA,	FBgn0038200,	CG9920,	1	.
CG14118-RA	TGATGCTTCAGTTTATCGGCCTAATTTTGGCGGTCGTGATTCTGCGAGAGATTCGGGCACGTGAGG	66	+	chr3L	12885813	12885879	12885813..12885879	CG14118-RA,	FBgn0036323,	CG14118,	1	.
CG31660-RB	TATCCACCAGTTGTCCATGTGACCCACTAAAATATCTCAAATTCGCAGGCTCTAAGTGCCAAACACCGC	69	+	chr2L	4874838	4874907	4874838..4874907	CG31660-RE,	FBgn0051660,	pog,	1	.
CG33201-RB	ACGGAGCAACAAGAGATTTCCACACGTGATCTGGGAGCAGGAAAGCCGTCTCACCTTATAAGGCAAGCC	69	.	.	.	.	.				0	no match
CG32077-RA	GCAGCGACCGCAAGAAGAGATCCCGACGAAACTAAAGTAGAGACCCCATTGCGAATACCCCAGGCATAA	69	+	chr3L	11124327	11124396	11124327..11124396	CG32077-RA,	FBgn0014368,	nol,	1	.
CG30175-RA	CCTCCACCACAAGCTCAAGTCAAGGAGGTTACTCCAGTGAAGGTAGTGTCTTCCCCACCACCTCC	65	-	chr2R	19897434	19897499	19897434..19897499	CG33519-RB,CG33519-RC,	FBgn0053519,	Unc-89,	1	.
CG15287-RA	CGGCCGATCCGGATGAATGGACAAAGCCCGAAGTTCGCCCATCAACTAAAAGTCAGCGATCAGATCGAT	69	+	chr2L	14332437	14332506	14332437..14332506	CG15287-RA,	FBgn0261529,	ms(2)34Fe,	1	.
CG3412-RA	TAGGCGCTGTAATACTAATCGAGGGTCAGTCTTTGAATCGCCCTTCGGATCAGTGGATCGATCGATTGG	69	-	chr3R	16945788	16945857	16945788..16945857	CG3412-RA,	FBgn0023423,	slmb,	1	.
CG33476-RA	CGCGTCAGGATGCGAGAAAGTAGGGACCCCTTTGTGATGGAAATGCTGTGGGTATACAGTGTAGTACGA	69	-	chr2R	6297498	6297567	6297498..6297567	CG33476-RA,	FBgn0053476,	CG33476,	1	.
CG3143-RA	CCACTGTGGGTCGATCGTAATCCAAATCGCAAGGATGATCGTTATAGCCGGTAGTCGTCGTTGTTGTGT	69	+	chr3R	9907622	9907691	9907622..9907691	CG3143-RF,CG3143-RB,CG3143-RC,	FBgn0038197,	foxo,	1	.
CG13197-RA	AATTGGCGTCCATTGCACACATGGAGTAAATCGAACTGGATACCTGATCTGCTACTTCATGATCTCCGT	69	+	chr2R	7581985	7582054	7581985..7582054	CG13197-RA,	FBgn0062449,	CG13197,	1	.
CG33196-RB	GCGGCTCAAAGGGTTGAGGATATCTGCGTATCTATGGTGGGGCTGATTATAGCACTGGTCATCACGGCA	69	-	chr2L	4479702	4479771	4479702..4479771	CG33196-RC,CG33196-RD,CG33196-RE,CG33196-RF,CG33196-RG,CG33196-RH,CG33196-RI,CG33196-RJ,CG33196-RK,CG33196-RL,CG33196-RM,CG33196-RN,	FBgn0053196,	dp,	1	.
CG5366-RA	GACGGTCTCGACATTCGCAAAGCGGCATTTGAATGCATGTACACACTTCTCGAGCAGGGCTTGGATCG	68	-	chr2L	10358835	10358903	10358835..10358903	CG5366-RA,	FBgn0027568,	Cand1,	1	.
CG15050-RA	CACGGTCATCTTTCCCTGCATCTACGCCTCGCAGATATTGCCCAGAGATGAACAGGAGCGTTTGAGG	67	-	chrX	18339995	18340171	18339995..18340017,18340126..18340171	CG32547-RC,	FBgn0052547,	CG32547,	1	.
CG8746-RA	GGAGTTCCGTATTCCGAAGCGGATCAAGGGATTGAAGGATCGTGAAAGAAAGAAGCTGGAACGGAAGGT	69	+	chr2R	4680469	4680538	4680469..4680538	CG8746-RA,	FBgn0033330,	CG8746,	1	.
CG5802-RA	TCTACGCCGTCGGTATCTTCGTATGCTACTTCTTGTACGGAATTGTCCAGGAGAAGTTGACGCGGG	66	+	chr3R	16964613	16964679	16964613..16964679	CG5802-RA,CG5802-RB,	FBgn0250820,	CG5802,	1	.
CG1133-RA	ACATCGAAGGGATTGGAAGCTTCGTCGCATATACGTACATACACTTTCGGCCTTAGATTTCCTCCAGCT	69	+	chr3R	695539	695608	695539..695608	CG1133-RA,	FBgn0003002,	opa,	1	.
CG32335-RA	AGGGTGCTCTGGATGAGAACTTTCGGACCGTAGATGTCAGTGTGGAAGCTTGCCCGGATTTAAGGGAC	68	-	chr3L	1202723	1202791	1202723..1202791	CG32335-RB,	FBgn0063667,	CG32335,	1	.
CG40224-RA	AATTACCAGCGCTAACGATCCCTATCACTTTTTGAAGATTTAGGTAGATCAATTTTGGGTCAATTTTCG	69	.	.	.	.	.				0	no match
CG15771-RA	GCAGCTGTTGGCCCATCACACTGTTGGCAAATTGTTATTTGCAACCTGCACGAAAAACAACCTCC	65	+	chrX	5653566	5653631	5653566..5653631	CG15771-RA,CG15771-RC,	FBgn0029801,	CG15771,	1	.
CG14269-RA	ACAGCCTATTGGTGGTCAGTTCCGGCTATGCGATCTACACTCTCCATCCAATGGAAACACCCTATGGCT	69	-	chrX	3329599	3329668	3329599..3329668	CG14269-RA,	FBgn0029658,	CG14269,	1	.
CG1132-RA	GCGGGACAAGAACACAATCGAGGATAACGACAGTGCTGGGAAGGGAAGCTACTGGATGCTGGACTCATC	69	+	chr3L	4020483	4020552	4020483..4020552	CG1132-RA,	FBgn0004895,	fd64A,	1	.
CG40156-RA	TCTGCTCCTCTCCACCAGTTCGATATTTGAAAATTCCCGCCTTCCACTCATTAATTTTCGGCAACACCG	69	+	chr3RHet	1459191	1459260	1459191..1459260				0	no match
CG30382-RA	CCGTGGATGTGCTGTGTCGTCGAATTGCGGATATCAACCAGGTGTACACGCAGAATGCCGAGATG	65	.	.	.	.	.	CG30382-RA,CG30382-RB,CG18495-RA,CG18495-RB,	FBgn0050382,FBgn0263121,	CG30382,Prosalpha1,	2	.
CG4045-RA	GGGTCTGTTGTACACCATGACGGACGTTGAGGACTTGCACAAGTGGATAGTGACACATATGGAGGAGCA	69	-	chrX	1969104	1969173	1969104..1969173	CG4045-RA,	FBgn0025629,	CG4045,	1	.
CG13033-RA	ACGCAACCACAGCTCCAATCGATTGAGCAGGTCAGATCCAGATCGCAGAGCAAGTGAAGCAAACATTTA	69	-	chr3L	16538649	16538718	16538649..16538718	CG13033-RA,	FBgn0036638,	CG13033,	1	.
CG3105-RA	GCTGAGGGTCTCGTTACCTGACTCAAGCCACACAGAAATCGGCGGTTCAATATGCTCCTCGAAATCCGA	69	+	chr2R	19879267	19879336	19879267..19879336	CG3105-RA,	FBgn0034950,	Pask,	1	.
CG15914-RA	TGCGCCCAACAAATTGGTCTACCCGGAAATCTACCCAAAGGAAAACCTCTACAACACCTCCAATGCGCT	69	+	chrX	15748511	15748580	15748511..15748580	CG15914-RA,	FBgn0030700,	CG15914,	1	.
CG40163-RA	ACACTGGCGTGCTCAGGATTTTCAGATCCCGAACTATATACACTGCCTTCAGCAATAACCGTTTCGATT	69	.	.	.	.	.				0	no match
CG15460-RA	GCAGCCTCAGTTTACGCGTGGATTCAATCAGTGGATGGGCAATCAGTCTACGATGACTAAGGGTTTGCC	69	-	chrX	20261646	20261715	20261646..20261715	CG15460-RC,	FBgn0031104,	CG15460,	1	.
CG7328-RA	CCCGCAGACCACCTATGAGGACTTCAGCAAGATAAACCTTTCGCAGTATGGATGGGTACACTTCGAGGC	69	-	chr3L	20132964	20133033	20132964..20133033	CG7328-RA,	FBgn0036942,	CG7328,	1	.
CG40178-RC	GCCTCGAAGTTTAACTAGGTTACGATACCTTCTAACCGCCTTTGAATTTTACGACCGAGTTGCAT	65	.	.	.	.	.	CG41320-RA,CG40178-RB,CG40178-RA,	FBgn0085612,FBgn0058178,	CG41320,CG40178,	2	.
CG2345-RA	CTCATCCGCAGTACTCATTTAACTATGATGTTCAGGATCCAGAGACAGGAGATGTTAAGTCCCAG	65	+	chr3R	2510385	2510450	2510385..2510450	CG2345-RA,	FBgn0000552,	Edg84A,	1	.
CG2918-RA	CGACCAGAGGCTATCAAAGCACTCAAGGGCATGATTGATGGCGCCGAAAAGTTCCTGGTCACTGG	65	-	chrX	2165965	2166030	2165965..2166030	CG2918-RA,CG2918-RB,	FBgn0023529,	CG2918,	1	.
CG31052-RA	TGGCGGAAATCTGTCGAGAAAGGAACGTGCCTACATTACAATTTCCGGTTTTCCCAAAGCAACTGTCCA	69	-	chr3R	18808315	18808384	18808315..18808384	CG31052-RA,	FBgn0051052,	Nha2,	1	.
CG11639-RA	CGCGAGGATCAGCATTCCTTGAAGGTCGATGTGGTCAAAATTGTGGCCTGTCTTGGAACTGACAATGGA	69	-	chrX	905182	905251	905182..905251	CG11639-RA,	FBgn0040338,	TfIIA-S-2,	1	.
CG4216-RA	CGGAGCAAACTGAAAGAGTAATCATCTATTTGTGCCTGAAATTGGTAAATCGTCCAACAAAGCTATAT	68	-	chr3L	18586752	18586820	18586752..18586820	CG4216-RA,	FBgn0003683,	term,	1	.
CG9084-RB	AGGACAACTAACATTCTGTGTAGAGGGTCCTGTCGGTTTAGGATTCTGCTGCTTCAGTTTGCCCAAAGA	69	-	chr2R	7105271	7105340	7105271..7105340	CG9084-RB,	FBgn0033582,	CG9084,	1	.
CG6295-RA	CACCTTCTACCTGTACACCAACTCGAACCGCAACTCTCCCCAGGAGATCAAGGCTACGTCAGCAT	65	-	chr3R	22832430	22832495	22832430..22832495	CG6295-RA,	FBgn0039471,	CG6295,	1	.
CG40445-RA	AGCGGTACCAAAGAAAACAGTTTGTTACATCTTGCGCCCAACGTGATTGTCGTCATCAAGGAGCCAGCA	69	-	chrYHet	33932	34001	33932..34001				0	no match
CG3401-RA	CACTTACGTTTAGGGCTATACGATAAACGAGCTCATCCAAAGATAATCGAACGACAACTCTCATGAGAT	69	+	chr2R	20200357	20200426	20200357..20200426	CG3401-RA,	FBgn0003888,	betaTub60D,	1	.
CG33468-RA	TCGCCGAAAACTGTGGTACATGTACTATGCGACAACAGATCAGGTGGACAAAACTGTGGATCAGATCCA	69	-	chr2R	10494155	10494224	10494155..10494224	CG33468-RA,	FBgn0053468,	CG33468,	1	.
CG31386-RA	CGTTACGTGCCCTCAAAGTGCCATTTTGTCACTGGGTCCTTTTTCTGCTACTTCCACTTCTTCTCGCAC	69	-	chr3R	7096092	7096161	7096092..7096161	CG31386-RA,	FBgn0051386,	CG31386,	1	.
CG1956-RA	CATTGCATAAACTTCGCGTACGAGTAGTAACCAATATGCCCTTAAATCAAAGTCTAAACACAGCCAACA	69	-	chr3L	1859474	1859543	1859474..1859543	CG1956-RA,CG1956-RB,	FBgn0004636,	R,	1	.
CG32090-RA	GGTCTCCGTTCTGATTGCCGGATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCACCTGGC	69	+	chr3L	11466728	11466797	11466728..11466797	CG32090-RA,CG32090-RB,	FBgn0028667,	Vha16-3,	1	.
CG15630-RA	ACTTTGAACTCGTAATCAGGTCGCAAGCATATTCACGGTTTTTTGTGTAGTAACCACAGGAATTC	65	-	chr2L	4793707	4793772	4793707..4793772	CG15630-RA,	FBgn0031627,	CG15630,	1	.
CG40370-RA	CCGATGCTGACGCTGCGATGGAGAACAATGACCGTTGCAGTGGATCTCCCCCTTTAAGATCTGCG	65	.	.	.	.	.				0	no match
CG8610-RA	TGGGCCACCGACCTAGATCCCAAAGGTGCCAACAATCAAATCAAAGATGCCTTCGACTCAATGGCTCAT	69	-	chr3L	7239048	7239117	7239048..7239117	CG8610-RA,	FBgn0012058,	Cdc27,	1	.
CG1748-RA	CGTAAACAACTGTATTGATTATTTAGAAGACAACGGGTTACAACAGGTTGGACTCTTTCGGGTGAGCAC	69	+	chr4	282046	282115	282046..282115	CG42316-RC,CG42316-RE,CG42316-RD,	FBgn0259216,	RhoGAP102A,	1	.
CG15880-RA	ACGGACTTCCAGTCCACCACGTATACCACCTGTAATGCCTTCAACATCTTTCCCTCCACATCGGCG	66	-	chr2L	817673	817739	817673..817739	CG15880-RA,	FBgn0031283,	CG15880,	1	.
CG5522-RB	GCTCACTCACTCCCTGAAACGAGGCAACCACAGAACATTCCCGCAACCACAACGAACGAACAAATTGC	68	+	chr2R	12678986	12679054	12678986..12679054	CG5522-RA,CG5522-RD,CG5522-RC,CG5522-RE,CG5522-RB,CG5522-RF,	FBgn0034158,	CG5522,	1	.
CG7460-RB	GCAGCGGATCACCTGTTTGAAGTATCCGGAAAGGGTCACTTGGAGTACTGGCTATGCGAAGGCGAG	66	+	chr3L	17734458	17734524	17734458..17734524	CG7460-RB,	FBgn0036749,	CG7460,	1	.
CG14086-RA	GCGACTTTGAAAAGGTGTCGAGCTTTGTGGATACCATGGAGGATGATTTCGCGGAGATTGGTGCCACGC	69	+	chr3L	19272720	19272853	19272720..19272733,19272797..19272853	CG14086-RA,CG14086-RB,	FBgn0036860,	CG14086,	1	.
CG1620-RA	TCTCTCATAACCCGTAAAGAATTTCTCTATTGTTAAGTGTGCGATTCGTCTATTTGTTACATGTGCGTG	69	-	chr2R	3381616	3381685	3381616..3381685	CG1620-RA,CG1620-RB,	FBgn0033183,	CG1620,	1	.
CG15336-RA	CGACTGCAACGTGGGTTTCTCCAGTTCGCGGGCCCTGTACCATCACCGGACGCTCCACGAGGATGGGAA	69	+	chrX	8042280	8042349	8042280..8042349	CG15336-RC,	FBgn0030009,	CG15336,	1	.
CG8714-RA	CCCTGACTGCCTACATGTTCCTTATCCTGGTCTGCTACCTGCCATCATACCTCTTTCCCGAGAGTCCCA	69	+	chr2R	3972841	3972910	3972841..3972910	CG8714-RA,	FBgn0028563,	sut1,	1	.
CG32168-RA	ACAAAGCGAGCGATTAACAAATGCATTGAACGCCTTCTATTCCGCACCCTCACACGATCGTCCAAGGGA	69	-	chr3L	17031033	17031102	17031033..17031102	CG33522-RA,	FBgn0261872,	scaf6,	1	.
CG13157-RA	ACCAGAATCCTGCCTATTCCCGACCAGTCAGTCGTGAAAGTTCAGCAGAGAAATATGGACGCCGGC	66	+	chr2R	8304724	8304790	8304724..8304790	CG13157-RA,	FBgn0033732,	CG13157,	1	.
CG1738-RA	AGATGGACCGAGGCGTTACGTGGGAATTAGTACATTTTGGCACTGTACATGTGCATTCAATATTTTGAT	69	+	chrX	11243091	11243160	11243091..11243160	CG1738-RA,	FBgn0030291,	CG1738,	1	.
CG7287-RA	GCTGCCGCTCCGGATGCAGAGATTGTTGACCTGGTGTCCGATGTCAATGCCGATAGCTATAGCTACAAA	69	+	chr3L	6144483	6144552	6144483..6144552	CR18775-RA,CG7287-RA,	FBgn0020646,FBgn0020645,	Lcp65APsi,Lcp65Aa,	2	.
CG17436-RA	TTTTTGGACCATGTCCCCGATTCAGTTGTTCAAAGTTTGGAAGCTCCGGAAGTCCTGAGAGCGAATCAT	69	+	chr3LHet	2254561	2254630	2254561..2254630	CG17436-RA,	FBgn0260987,	vtd,	1	.
CG41130-RA	GGCGAAGAACCTCCTACGACATCTTTTGCCGATAACATAGATAAAGCGTGTCCTTTACCAGTGCTGCGA	69	+	chr4	1223076	1223145	1223076..1223145	CG43369-RC,	FBgn0263112,	Mitf,	1	.
CG3204-RA	GCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGCATCTGCAAAGGATCGGATAAACGTAAACGAA	69	+	chr2R	19952710	19952779	19952710..19952779	CG3204-RA,CG3204-RB,	FBgn0025806,	Rap2l,	1	.
CG9811-RA	CTTTCGTTTTCCTCTAAGCATGAGTTGGGATAATTTTGAATGCTCGTTGTAATACGGCGACTGGAATAA	69	-	chr2R	15199811	15199880	15199811..15199880				0	no match
CG2053-RA	GCACCCACATTGACAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGCTACAAG	69	+	chr3R	27864325	27864394	27864325..27864394	CG2053-RA,	FBgn0039887,	CG2053,	1	.
CG9330-RA	CAGTGGAAAAGGAGACTGTGGTCACGCTCAAATTCCCCGAAGTGGAACCCCTTAATCCTCCCGTG	65	+	chr3L	19581236	19581301	19581236..19581301	CG9330-RA,	FBgn0036888,	CG9330,	1	.
CG9533-RA	GCGACAGAAGCGCCTACAAAAGTCCGAGCTCAATCACAAACGATCGGAGGTTGCAACAGAGGCAG	65	-	chrX	14684456	14684521	14684456..14684521	CG9533-RA,CG9533-RB,	FBgn0003301,	rut,	1	.
CG3544-RA	GATGTGCCATCCGACAAGAAGGGACGAATACATGGGCCTCCTATGCTTCCAAAACGGAGGATTGACGC	68	+	chr2L	785394	785462	785394..785462	CG3544-RA,	FBgn0031279,	CG3544,	1	.
CG15741-RA	ACCTACTTCGTCCACTTCTCCAACTTCGTCCACTTCTCCAACTTCGTCCACTTCTCCAACTTCGTCGTC	69	-	chrX	11731870	11731939	11731870..11731939	CG15741-RA,	FBgn0030338,	CG15741,	1	.
CG14442-RA	CCTGGCAGGCACAAAAGTCCACCGGAAACCCAGAAAGCTAAATGAAATGAAACACTGTGACGCCCC	66	-	chrX	6583503	6583569	6583503..6583569	CG14442-RA,CG14442-RB,	FBgn0029893,	CG14442,	1	.
CG33296-RA	CTTTGATCGGCCTTTTTACTCTATCTTGGGCCTTAATTGCAATAATTTTTTACCATTTCTCGGAGCCTG	69	-	chr2L	7715497	7715566	7715497..7715566	CG33296-RB,	FBgn0053296,	CG33296,	1	.
CG31628-RA	GCCGGAATACCTTCGTTGGTCATCTCCCACAAGGATTTCGCTAGCCGAGAGGTCTATGATGCGGAACTT	69	-	chr2L	7015469	7015538	7015469..7015538	CG31628-RA,	FBgn0000053,	ade3,	1	.
CG3436-RA	GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGGAATTCCATCCCGAGGGGG	68	+	chr2L	156448	156516	156448..156516	CG3436-RA,CG3436-RB,	FBgn0031229,	CG3436,	1	.
CG31294-RA	AAATGGATGCTGATGAAAGCTTTTTGAATCAACGGTCTCTACTAATGGATGTTATGAAGCAGCTTGAAG	69	-	chr3R	11542148	11542217	11542148..11542217	CG31294-RA,	FBgn0051294,	CG31294,	1	.
CG15239-RA	ATGAGACTGGATTCGCCTACGAGCTCCTCAATGGCATCCTGGATTTTTTCAACTGAGCGGCCAGC	65	+	chrX	3784269	3784334	3784269..3784334	CG15239-RA,	FBgn0029681,	CG15239,	1	.
CG15198-RA	GAAAACCCTCGAGTCCGACGACAAACCCTTCAATCCCTTCTACATTGGCCCACATCCCAGCAAGG	65	+	chrX	11142443	11142508	11142443..11142508	CG15198-RA,	FBgn0030283,	CG15198,	1	.
CG30361-RA	CCCCCGGAGATTCGAGATTCTCGCAACCATACGTAAGTAGAGGAAAGTGTCTGTTGACCCAAGCG	65	-	chr2R	4362680	4362745	4362680..4362745	CG30361-RC,CG30361-RD,CG30361-RE,CG30361-RF,	FBgn0050361,	mtt,	1	.
CG40207-RA	CGTGGACGTTGTCTCGCCACAGAGTCTAGACTTTGGAATTCGGACTTTTGCACTTTGCTTGTGCCTAAA	69	+	chrU	884800	884869	884800..884869				0	no match
CG11427-RA	TCGAGAGATTATATGTAAATGTGCAGTGTAACAGATGCAACTTAAGTGTTCAAGTGGGATCGAAATCCA	69	-	chrX	4430383	4430452	4430383..4430452	CG11427-RA,CG11427-RB,	FBgn0003210,	rb,	1	.
CG5545-RA	TGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCGACTAGCAGCAGTTAAATAGGAGTGGGGG	66	+	chr2L	17590945	17591011	17590945..17591011	CG5545-RA,CG5545-RB,CG5545-RC,	FBgn0032651,	Oli,	1	.
CG3351-RA	AGGTTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAGATTCAGGACCCGCCCA	69	+	chr3R	10338036	10338105	10338036..10338105	CG3351-RA,	FBgn0038234,	mRpL11,	1	.
CG3069-RA	CCGACTACGGTATTAATGTTAGGAAAGTGGACTATAGTCAGTAGATAATGGCATGCATTGTAGTAGTTT	69	-	chr2L	2767311	2767380	2767311..2767380	CG3069-RA,	FBgn0026324,	Taf10b,	1	.
CG31522-RC	CCTCACGTTCCTCTCCGAAACATGGGGGATCAATTATTTTGACACCAGTTCTCTAATTGGCAAGAGCGG	69	-	chr3R	273236	273305	273236..273305				0	no match
CG15655-RA	CCCTGACCTCCATGTTCATCAATGTGGTGCAGATCAAGCTGAGCGATCACTTCAAAATGGCCAGCGC	67	+	chr2R	16988322	16988389	16988322..16988389	CG34396-RC,CG34396-RD,	FBgn0085425,	CG34396,	1	.
CG15427-RA	TGAATGAGAGGCTGACCATACGTGTAAGTCCCAACTGAAAATCGCTCCTTGCATTTTGCATTCCGGACT	69	+	chr2L	4305400	4305469	4305400..4305469	CG15427-RA,	FBgn0010473,	tutl,	1	.
CG31013-RA	GCAACCAGTGGGGATATGGCAATTGAAAGCATTCTACAGCTGGAAGGATGAGCTTCCCACCGAACGTGA	69	-	chr3R	26471105	26471174	26471105..26471174	CG31013-RA,	FBgn0051013,	CG31013,	1	.
CG6440-RA	TTTTTTGCAAGGACATCCCGAACACCACTTGGTCCCGACATGAGACAACGACACTGGACCCTGAC	65	+	chr3R	20168922	20168987	20168922..20168987	CG6440-RA,	FBgn0011581,	Dms,	1	.
CG1179-RA	TGGCACTACTGCAGCGGATGGTTGCCGTCCATCGATGACTGCTTCTAAACCGATTTCGACCCTGAATAA	69	+	chr3L	1207768	1207837	1207768..1207837	CG1179-RA,	FBgn0004425,	LysB,	1	.
CG3822-RA	CTCCACATATCAGCGCATGTGGTCATTCATGGAATCAGCTCGTCCTTCCGTCTTTACAGCCAGCA	65	-	chr3R	16687323	16687388	16687323..16687388	CG3822-RA,	FBgn0038837,	CG3822,	1	.
CG17350-RA	TTTTTCGCTGACAATAACATATTCCTAATTGCCATCAAACTGTTAGAAAAGAATTGTATTTAGGTAAAG	69	+	chr2L	19383160	19383229	19383160..19383229	CG17350-RA,	FBgn0032772,	CG17350,	1	.
CG12169-RA	AATCGTGACGGCCTATCCCGACGTGGAGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGC	65	+	chr3L	582170	582235	582170..582235	CG12169-RA,	FBgn0035143,	Ppm1,	1	.
CG6040-RA	TGCTGGCAATCTAAGGAATGTAGTCTCGGTGCAGAATCTAAGTACACTGAACGAAGAATCCTCGGCCAA	69	+	chr3R	14956419	14956488	14956419..14956488	CG6040-RA,CG6040-RB,	FBgn0038679,	CG6040,	1	.
CG9745-RB	GCTGAGAAATCGGACAAACCGTTTACAACTGCACTGCACTGTAATGACGACACATAGCTCGGAAAACGA	69	-	chr3R	5063963	5064032	5063963..5064032	CG9745-RC,CG9745-RA,CG9745-RD,	FBgn0000412,	D1,	1	.
CG9699-RA	TCCCCCCCCAAAAAGCACAAAGAATCCGACGAACCAAAAACTTCAGACATCACACAGCCTTTTTCAATT	69	-	chrX	16578908	16578977	16578908..16578977	CG9699-RA,CG9699-RF,CG9699-RB,CG9699-RD,CG9699-RE,CG9699-RC,CG9699-RG,	FBgn0259923,	Sep4,	1	.
CG32138-RA	GCGTGTGGAGCGTATCTCGTCCAAGCTAGCCATTATGAACTATATGGGCAATTTTGTCGACAGCGTTCA	69	+	chr3L	14060922	14060991	14060922..14060991	CG32138-RA,CG32138-RB,CG32138-RC,	FBgn0052138,	CG32138,	1	.
CG6025-RA	TCGCCGAGGTCCATCATGCGTTAGGACTGGAGAACCTAAAGAACCGCACATTTCAAATATTCAAAACGT	69	+	chr3L	15977144	15977213	15977144..15977213	CG6025-RA,	FBgn0000115,	Arf72A,	1	.
CG30473-RA	TATCACCGGAGAGCTATGATAAGTATGGTGTAAAGGTAAAACCATGCCTCAAACTATCGCATCGC	65	-	chr2R	10911983	10912048	10911983..10912048	CG30473-RA,	FBgn0043530,	Obp51a,	1	.
CG12237-RA	TCATGCGGTTCTACGATGCCAGGAGTACTCGTGAGGGTCTCAAATGCGAAACCATCCATCCCGATC	66	-	chrX	19535554	19535620	19535554..19535620	CG12237-RA,	FBgn0031048,	CG12237,	1	.
CG3139-RA	TGTATCCCCTGTACACCCACTTACACAGTTGTAGTTATGTTCACTGAAGCAGAAGAGTTATGCGTAGGA	69	-	chr2L	2781064	2781133	2781064..2781133	CG3139-RA,CG3139-RB,CG3139-RC,CG3139-RD,	FBgn0004242,	Syt1,	1	.
CG7364-RA	CGGAAACTAAGCGAAAACTCGACGACTCAGCCATGTGAGCTAACTTCCCCTTCTTGTCCCCAGCTGCAG	69	+	chr2L	13773606	13773675	13773606..13773675	CG7364-RA,	FBgn0028541,	TM9SF4,	1	.
CG7337-RA	GCCACCAAGGCCTAGGAACCTGGCATTTGATCACAAGAGCAAACTGATGATCAACAATAGTGGCAGCCC	69	+	chr2L	1942320	1942389	1942320..1942389	CG7337-RA,CG7337-RB,CG7337-RC,CG7337-RD,CG7337-RE,	FBgn0031374,	CG7337,	1	.
CG2150-RA	GAGATCGCTTCCCCTTCTCAAGCCCTCTTCCCGAACTCAGCGACTGTACCCCAACACTCTGAAAC	65	-	chr3R	27589293	27589358	27589293..27589358	CG2150-RA,	FBgn0003065,	CG2150,	1	.
CG7635-RA	GCGACAGTTTCGAATCCATAGCCGATCGGAGAGCAACGAACGTAGGCCAGAACGGAGCAGAGAAAC	66	+	chrX	19082077	19082143	19082077..19082143	CG7635-RA,	FBgn0030993,	Mec2,	1	.
CG6007-RA	CTGTGGACTCCCTGTACGGGCCGACTAAGAACATCTGGAGCGAGGACCTTAACAAGGATCACTGG	65	-	chr3R	14853898	14853963	14853898..14853963	CG6007-RA,	FBgn0260779,	gatA,	1	.
CG3962-RA	CACACCCGGATGGAAGTAACAACGGGGAAAGGAATGCTCATACACCACAAAACACGTACGGCAGTGGG	68	-	chr3R	12900422	12900490	12900422..12900490	CG3962-RA,CG3962-RB,CG3962-RC,	FBgn0038475,	Keap1,	1	.
CG11417-RA	TGCTCAAAAGGCGGTTTCAGAGGACCCACAGAAGAGCAAGCCCAAAAAGACTTCTAAGCAGGAACGCAT	69	+	chrX	1249491	1249560	1249491..1249560	CG11417-RA,	FBgn0024364,	CG11417,	1	.
CG40380-RA	ACCCTGCGCCTATGGTTCTCACCAAGACAGTTTCAGCCTACTTTATGCTGTCATCCTTGCTCCTGATGC	69	.	.	.	.	.				0	no match
CG40303-RA	AGAAAGTAAGCATCTGCGTTTAAAAAACAAGCAGTTTGCATGCCTACCGGTTGCTCCCAACTTAAGGCA	69	+	chrX	22411213	22411282	22411213..22411282				0	no match
CG12913-RA	GGTCTACTACCCCGTCGTATTTAGCCTGTACAATCCGCATGTGGTGTACTCACTGCAGGGCAAGCC	66	+	chr2R	6141840	6141906	6141840..6141906	CG12913-RA,	FBgn0033500,	CG12913,	1	.
CG10349-RB	CGACCGAATACCAGCAAATGCCCAAAGTAAATCTCTTTCGAGTGGCTGCAATCCCCGTGGACGTTCAGT	69	.	.	.	.	.				0	no match
CG6329-RA	AAATCACCTTTCAGCGTGAATCATATCATTGAGCTTTGCTTCACAAGAAGACGGGAAGACATTCT	65	+	chr2R	9720354	9720419	9720354..9720419	CG6329-RA,	FBgn0033872,	CG6329,	1	.
CG9664-RA	GGAGCAGTTCCTCAAGGACTTCCAGATGGAGGGCAATGAGTTCGATTGGGATATGGCTGTCCTGGGAAT	69	-	chr2L	3291402	3291471	3291402..3291471	CG9664-RB,CG9664-RA,CG9664-RC,CG9664-RD,	FBgn0031515,	CG9664,	1	.
CG11655-RA	GCTGGACGTGAAGATCAAGCGACCGAAACGTGTGGTGGATGACATATTCCTGGGTACGATCATACTACT	69	+	chrX	15348017	15348086	15348017..15348086	CG11655-RA,	FBgn0030638,	CG11655,	1	.
CG4035-RC	GCTCCTTATTCGGTCCGATCCCACACTGATTATTTTGTCTTTCATTTATTTATCGTTATAAGCAACAGT	69	-	chr3L	9392883	9392952	9392883..9392952	CG4035-RA,CG4035-RG,CG4035-RE,CG4035-RF,CG4035-RB,CG4035-RC,CG4035-RD,	FBgn0015218,	eIF-4E,	1	.
CG1964-RA	AGAAAACCAAGTCCATGGGTAATCTGTCCAACGAGAAGGTCAAACTGCAGGTGGTTTACAAGCCGCCCT	69	+	chr3R	25557189	25557258	25557189..25557258	CG1964-RA,	FBgn0039688,	Kul,	1	.
CG14476-RA	GCGCCTCAACCTTGATGTTGCACGATCCGTACACACTGATAATCTGCTTAGACCGTCAGGGCAAGGC	67	-	chrX	21472179	21472246	21472179..21472246	CG14476-RB,CG14476-RA,CG14476-RD,CG14476-RE,CG14476-RC,	FBgn0027588,	CG14476,	1	.
CG15385-RA	CAACCAGGGCCAAACCATAGCCTATGCCTCCAGACTAGCATTCGAAGTTTACCGGAGCGACGCTCA	66	-	chr2L	2210486	2210552	2210486..2210552	CG15385-RA,	FBgn0031397,	CG15385,	1	.
CG13460-RA	ACTACTACCACTGTTTCTGGTGAGGATTCGCCATCTGTGACTACCGATGTCGTTCCCGATCAGTCG	66	-	chr3L	15054221	15054287	15054221..15054287	CG13460-RB,	FBgn0036471,	CG13460,	1	.
CG14984-RA	ATCGAAGAGTCTCGTCACCGAATCTCCCCAGGCGGAAACTACAAACCCACCAACCACATCCGATG	65	-	chr3L	3951428	3951758	3951428..3951486,3951751..3951758	CG14984-RB,	FBgn0035480,	CG14984,	1	.
CG1965-RA	ACTGACATGTCGTCATACCAGGACGCATTTGTTAGCCTGTGCCTTCCAAAAGTCTTGGCTCCGCT	65	+	chr3R	2896039	2896104	2896039..2896104	CG1965-RA,CG1965-RB,	FBgn0037466,	CG1965,	1	.
CG32041-RC	AAGAAGCTTTTGTTGGAAAAACCAAGTTACCTTATTAACTACAATGCGTTCCTTACCGATGTTTTGGCG	69	+	chr3L	9367307	9367376	9367307..9367376	CG4456-RB,CG4460-RA,CG4460-RB,	FBgn0001228,FBgn0001223,	Hsp67Bb,Hsp22,	2	.
CG2069-RA	TGAGCGGGGACTAGTGTTTTAATTACTCCAGCTGTTTTTCATTCTGCTTATCCCAGGTGGTACAGGCGT	69	-	chr3L	1731256	1731325	1731256..1731325	CG2069-RA,	FBgn0035264,	Oseg4,	1	.
CG6348-RB	CGGGCATCAAAAGGAGTGACAGCTTAGATCCCATAGCGAACACTACGATTCTATCCGTGCCGCAAC	66	-	chr3R	22706718	22706784	22706718..22706784	CG6348-RA,CG6348-RB,	FBgn0003267,	ro,	1	.
CG4041-RA	CTCAGCTTGTTCAAGTTCATTCCAAAGTATCTGCAATGGTTCTTTCTCAAGGATAATTCGGCGGT	65	-	chrX	4810448	4810513	4810448..4810513	CG4041-RB,	FBgn0029736,	CG4041,	1	.
CG9575-RA	AGCGGTTTGCGAAACAAATGGACATCGAGCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGA	69	-	chrX	20051746	20051815	20051746..20051815	CG9575-RA,CG9575-RB,	FBgn0031090,	Rab35,	1	.
CG11594-RB	TGCTGTGGCTGAAGAGGAATCTGTCACAGACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACT	69	-	chr3L	4024390	4024459	4024390..4024459	CG11594-RB,CG11594-RA,CG11594-RC,	FBgn0035484,	CG11594,	1	.
CG6132-RA	GACCTTTTATCTGCTGGCATTTAAAACTGCTGTCTAATAAAACTATTATCATTCCTGCACGACCC	65	-	chr3L	11502066	11502131	11502066..11502131	CG6132-RA,	FBgn0003378,	Sgs8,	1	.
CG9147-RA	CGACCTTGTAGAGCAGTTGGAACAGGGCTTTGCAGGTCAATACCGTCTGGAGAAGGTTTACATCGACCG	69	+	chr2L	6067363	6067432	6067363..6067432	CG9147-RB,CG9147-RA,	FBgn0031774,	CG9147,	1	.
CG15354-RA	AGCACAGCGATGAGAATTCCTTCCGGATGTCAGGGTCAAGTAGCTGGGAAATGCAAATTATTGATGCAA	69	-	chr2L	2000524	2000593	2000524..2000593				0	no match
CG15437-RA	GAAGACGAGGAGACCGAAAACGACGTAGACATCATGGGCTTTGAGGATCTGGAGGACCCCCAACC	65	-	chr2L	4444162	4444227	4444162..4444227	CG15437-RA,	FBgn0027609,	morgue,	1	.
CG9602-RA	CACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTCACCGATCCCAATGACGAGTCGGC	65	-	chr3R	9543354	9543419	9543354..9543419	CG9602-RA,	FBgn0038175,	CG9602,	1	.
CG31722-RA	GCCTTCGATGGAGTAGATCCCATTGGTGGAGCCCATAGGATTGGCGTTTCCTGGGGTTTTCACTGTTG	68	-	chr2L	10843081	10843149	10843081..10843149	CG17140-RA,CG17140-RB,CG17139-RA,	FBgn0260453,FBgn0260454,	CG17140,CG17139,	2	.
CG1671-RA	CAGGAGTGCACCATACTGAGAGCCGAGTTCCTGGATCACGGCAAGTTCATTATCTCCGCTGCTTCG	66	+	chr2R	5737365	5737431	5737365..5737431	CG1671-RA,	FBgn0033454,	CG1671,	1	.
CG31352-RA	GGGAAACTATGCTAATTTCACAGCCAGTTTTGAAACACGCTTTAAATAGTTGATGCAAGTGAAACCAAC	69	-	chr3R	5520606	5520675	5520606..5520675	CG31352-RA,CG31352-RB,CG31352-RC,	FBgn0051352,	Unc-115a,	1	.
CG1629-RA	TTTAGGCATTGATGTCCATAATAACCGCCTGTTTGTGACAACTCCTCGTTGGAAGAATGGTGTGCCTGC	69	+	chr4	249557	249626	249557..249626	CG1629-RA,	FBgn0039896,	yellow-h,	1	.
CG10480-RA	CCGTTGGATGTGGCGAAGTCTGTTCCTATGCCGTTACAATTGATGGCAAACTGTATTCCTGGGGCTCCG	69	-	chr3L	5924208	5924277	5924208..5924277	CG10480-RA,CG10480-RB,CG10480-RC,	FBgn0002638,	Bj1,	1	.
CG6067-RA	CCACTCACACATCCTGCCATCAGCATCAGAGTAAATCGCCAAGGATTTGTGTCCAGCCGAAAACCAGCA	69	+	chrX	5851697	5851766	5851697..5851766	CG6067-RA,	FBgn0029828,	CG6067,	1	.
CG9487-RA	CCGGCCAAACGGAACTCGAGTGTTAGCCATGTCTATGACAACTATCTGCTGTATGCCACCAGCGA	65	+	chr2L	8931668	8931733	8931668..8931733	CG34398-RA,CG34398-RH,CG34398-RI,	FBgn0085427,	CG34398,	1	.
CG15514-RA	CTCCAACTTGACGCGCCACTTAATCCGGAACCACAAGCTCTTGGCCCGATCAATTTTTGCCGGCG	65	-	chr3R	25686907	25686972	25686907..25686972	CG15514-RA,	FBgn0039712,	CG15514,	1	.
CG33226-RA	GGGCAAAACGGAATCTCAACTGACGAGCACAATACTCCAGACAACTAGTTTGTTCCATCTGGATCGCAA	69	-	chr2R	17426010	17426079	17426010..17426079	CG33226-RC,	FBgn0069056,	CG33226,	1	.
CG11820-RA	GCTGCAAGGCGTTTTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGCATCCCA	69	+	chr3R	20892080	20892149	20892080..20892149	CG11820-RA,	FBgn0039270,	PQBP1,	1	.
CG9363-RA	TGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCCGATCAGCCTGATCAAATCCGGTGGCG	65	-	chr3R	5284379	5284444	5284379..5284444	CG9363-RB,CG9363-RA,CG9363-RC,	FBgn0037697,	CG9363,	1	.
CG11374-RA	ACGCCTAACACACTCATTGCCTCGACCCATTCCACATTCAAACAAACTTCCCCGAGATGGAGAGAACGT	69	+	chr2L	76972	77041	76972..77041	CG11374-RC,	FBgn0031214,	CG11374,	1	.
CG15423-RA	CAATTGTAGAGGTGGACATTGTGCCGCCAAGGATTCCTCGACCAGTGATTGAGATCGGAGTGGGC	65	+	chr2L	4006170	4006235	4006170..4006235	CG15423-RA,	FBgn0031580,	CG15423,	1	.
CG8657-RA	TGTGGATGCGTACATCACTTACAACTTCCACAAGACGCGCGAATCTCGATTCTATCTGCTCAGCAGTCG	69	+	chr2R	8646392	8646461	8646392..8646461	CG8657-RA,	FBgn0020930,	Dgkepsilon,	1	.
CG3950-RA	TGATCGAGGCACCACAGATGCGTCAGAATCAGAGTCACACCATGAGCACCACTCGATCCAGCAAC	65	+	chrX	6456039	6456104	6456039..6456104	CG34417-RD,CG34417-RF,CG34417-RH,CG34417-RK,CG34417-RL,CG34417-RI,CG34417-RJ,	FBgn0085446,	CG34417,	1	.
CG15829-RA	GTCTGACCGCCGATGATGCCAAGGCCTACTACATCGAGGTCTACAAGAAGTACGCTCCCCAGTACGAAT	69	+	chr3L	7122303	7122372	7122303..7122372	CG15829-RA,	FBgn0035743,	CG15829,	1	.
CG9854-RA	TCCCCACAGCTGGTTTGAGGAGTGCGTAGAAGAGAGAAGTGTGGAGAGGAGGATGTGGATAAAGATGGA	69	-	chr2R	15551711	15551780	15551711..15551780	CG9854-RA,CG9854-RB,	FBgn0015949,	hrg,	1	.
CG9795-RA	AAAGGAGACTAACAAACGCCTCTCACATCTGGAATCCGAAAACAAGTGCCTTCGTCAAGCTCTGGCCGG	69	+	chr3R	150623	150692	150623..150692	CG9795-RB,CG9795-RA,CG9795-RC,CG9795-RD,	FBgn0037234,	CG9795,	1	.
CG3083-RA	GGCAAGTGCATGGTCTTGCCCACCGTCAAAGCCGAAGATGTTCCTAAGCTCTTTCCTGATGGTATCGAA	69	-	chr2L	2877241	2877310	2877241..2877310	CG3083-RA,	FBgn0031479,	Prx6005,	1	.
CG41061-RA	GGTATTTAAAACCGAAACAGTTATTGATAATGGCAGTTTATATAGTTCGGGATCTGAAAATCCTGAGCA	69	.	.	.	.	.				0	no match
CG4370-RA	CGCTGGACAGTGTGATCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATAGGCCGACCAGC	68	-	chr3R	19344232	19344300	19344232..19344300	CG4370-RA,	FBgn0039081,	Irk2,	1	.
CG40290-RA	CCATCGCCGGAATCGCCACAAGTAGGACCAAGTGGAATGGTTAAACAACCTTATACAATGCCACGGCCA	69	+	chr2R	493599	493668	493599..493668				0	no match
CG8624-RA	GTTCGAGGTCTCCAAGACAGACAAGTCCAACCCAAACTGCAATGAGTTGGAATACCAGTGGGGCTGCTT	69	+	chr3L	7135286	7135355	7135286..7135355	CG8624-RB,CG8624-RC,	FBgn0023001,	melt,	1	.
CG12189-RA	AATCCATATGTCACCACCAATGTGAGCCCGCTAAAGGCCACCGATCTTAAGCCATCGACTTCCCG	65	+	chr3L	657202	657267	657202..657267	CG12189-RA,	FBgn0035150,	Rev1,	1	.
CG2196-RA	ATTCCCATGAGCTATGTGTGGCCCTTGGACAAGGAAGAAAAGCAGAACCCCAAGCTCTACTCGCC	65	-	chr3R	27577828	27577893	27577828..27577893	CG2196-RB,	FBgn0039872,	salt,	1	.
CG1318-RD	GAGTGTCCCATTGACGCGTACGATGCACAAGTTTGACCAGCTATTAAACCATTTCTCTTAACGGTCGCT	69	+	chr3L	4291033	4291102	4291033..4291102	CG1318-RD,CG1318-RE,	FBgn0041630,	Hexo1,	1	.
CG3024-RA	GAATTAGAAAGATCCCTGGAACGCACCCTCATTGGCCAGCACATCGTGAGGCAGCATATCGTCCC	65	-	chrX	4543483	4543548	4543483..4543548	CG3024-RA,	FBgn0025615,	torp4a,	1	.
CG9004-RA	GCGTTTGAAGGCCATGCTGAAGAATGATCGCTACGTGGTGACTCTGAACATAACCCTGGAGGACCTCCT	69	+	chr3L	2375557	2375626	2375557..2375626	CG9004-RA,	FBgn0035336,	CG9004,	1	.
CG9613-RA	TGGGCACCCTTCTGAAATCAGACGAAAGCAAGAAACAGCGACAATCCTCACTAACAACATCGACGGCCA	69	-	chr3R	4140922	4140991	4140922..4140991	CG9613-RA,	FBgn0037574,	Coq2,	1	.
CG2879-RA	GCGCTGAATACGATGGTGCGGCAGGCGAATAAACCGGGGCGGCAGGAGCAGAATATCCTTGGTCC	65	-	chrX	2170214	2170279	2170214..2170279	,CG34333-RA	,FBgn0085362	,Vml	1	.
CG9094-RB	TGGGATGGAATCCACTGGATGCTGATGTCCAAAAAAGCGACGAAAGCCTCTGCGAAAGGCCAAAAATGG	69	+	chr3L	1103752	1103821	1103752..1103821				0	no match
CG31670-RA	TCGCCAATACCGAAAGCCCTGAGTTCCGTGTAGACACGCTACACAGATCCTCCAGGACACGTTTCGATA	69	-	chr2L	1950489	1950558	1950489..1950558	CG31670-RA,	FBgn0031375,	erm,	1	.
CG6416-RG	AAATACCCTTTCCCAAGACCCCTGCTAAAAGTCCTTCCCGTCCACACTTCTTTCCGACCCACCAC	65	+	chr3L	8629755	8629820	8629755..8629820	CG6416-RG,	FBgn0035917,	Zasp66,	1	.
CG9616-RA	TGCCCCAGCACTACTGCGATGAGCACTTCAGATATGCCATGAAAGACAAACAACAGACCTATATAGGCA	69	-	chr3R	10071049	10071118	10071049..10071118	CG9616-RB,	FBgn0038214,	CG9616,	1	.
CG9874-RA	CGCTGATCCCGGTATTGTGCCACAACTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGA	69	-	chr2R	17574379	17574448	17574379..17574448	CG9874-RA,	FBgn0003687,	Tbp,	1	.
CG17029-RA	TGATGCAGGAGGGCTATCAGAAGGCAAAGACGGAATACAAGGTCAAGGCGGACTTCTACGACCTGGT	67	+	chr3L	15970254	15970321	15970254..15970321	CG17029-RA,	FBgn0036551,	CG17029,	1	.
CG14214-RA	AGTGGCAAGGAAACCACCAATCATCCAATCATCCATTATAGCATACATCAGATCAACGTCTTTTTTTTT	69	+	chrX	19538134	19538203	19538134..19538203	CG14214-RA,	FBgn0031049,	Sec61gamma,	1	.
CG15130-RA	CCTAATAAGTGAGTACATCATAGCTGTAGCTTCGGTCTGGACACAGTTTAATCGAATCATTGCCG	65	-	chr2L	20424430	20424495	20424430..20424495				0	no match
CG4928-RA	GGACGATCTCGAGGAGGACATTGTGGTCACGCGCCTGTAAATGTTTTTTTCTCACCCAAGGACACCCC	68	+	chrX	16830670	16830738	16830670..16830738	CG4928-RA,CG4928-RB,	FBgn0027556,	CG4928,	1	.
CG11779-RB	TGTACAAAGGTTTCGCTTTCGATTGCTTTGAAAGTTTTGTCCGCCACTAGTCAACTGCGTCCGCC	65	-	chr3R	14980647	14980712	14980647..14980712	CG11779-RB,CG11779-RA,	FBgn0038683,	CG11779,	1	.
CG8669-RA	GGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATATCGTCAATATGCGTGCTAAGGAGCTCGAA	69	+	chr2L	21318553	21318622	21318553..21318622	CG8669-RB,CG8669-RA,	FBgn0000370,	crc,	1	.
CG11584-RB	GCATCAAGTTGGGTGTTCAACGATTTAGCTGAACTTAGTGTTACGTAGCCAATTTCTAGCACCTTATAA	69	+	chrX	14077247	14077316	14077247..14077316	CG11584-RB,	FBgn0030541,	CG11584,	1	.
CG11920-RA	ACATATCCGATGTGGTTATGCGACATGATATACCCGACATTGGACACATGAGCGAGCAGAAGCCACACT	69	+	chr3R	20901633	20901702	20901633..20901702	CG11920-RA,	FBgn0039274,	CG11920,	1	.
CG3869-RA	CCGCAGTAGTGGAACAGTAGTGGGTTGGCTGACCGTGGGGCAAAACACTAACCAGAATGTGGATGATC	68	+	chrX	6264284	6264352	6264284..6264352	CG3869-RA,CG3869-RB,CG3869-RC,	FBgn0029870,	Marf,	1	.
CG33092-RA	GCCGAGGAGACAACGTTTGCATCCGTAGTGACGCAACATCCGAAATTGGCGGGGATTAACTTCACTGG	68	+	chr3R	17705354	17705422	17705354..17705422	CG33092-RA,CG33092-RB,CG33092-RC,CG33092-RD,CG33092-RE,CG33092-RG,	FBgn0053092,	P5CDh2,	1	.
CG31344-RA	GCTGGTGGACATATTCACCTATTACTTGCCCTACGTCGCCATTTGGAAGTTTGGCCCGAAGTCCGCGTA	69	-	chr3R	11049218	11049287	11049218..11049287	CG31344-RA,	FBgn0051344,	CG31344,	1	.
CG14205-RA	GCATTCGGGTACTGTCCTTCATCTGGGTCGTCTATGGCCACATATACCTCGTATCTTTCTTTGGCCCCA	69	+	chrX	19487743	19487812	19487743..19487812	CG14205-RA,	FBgn0031034,	CG14205,	1	.
CG1546-RB	AGTTGGGCAATCCAAAGAAAGCCGCAAGACTACTGAGTCAGATCCTTGAATCGCAACCAACACATTCCG	69	+	chr3R	26316659	26316728	26316659..26316728	CG1546-RA,CG1546-RB,	FBgn0039779,	PH4alphaSG2,	1	.
CG33338-RA	GGCCAGGTGGCTAAGGTGAGACTACGAGGCACTGAAAATTACTTCGCTATGAAAAGGCTTATGCGCCCA	69	-	chr3R	19975742	19975811	19975742..19975811	CG33338-RA,	FBgn0046322,	p38c,	1	.
CG9036-RA	GCAGGGCAAATTCAACGGCTACTAAGATGGGGAAGTGAGGATACCCGATTTAGGTCGACCCCGCAACTA	69	-	chr2R	16176324	16176393	16176324..16176393	CG9036-RA,	FBgn0034499,	Cpr56F,	1	.
CG9559-RA	GCCACCACAGAGACAGTTGCTACATCGGGCCAGGTTAATGAAATCAGCTTGACAGCAACGTCAGCATCA	69	-	chrX	22229188	22229257	22229188..22229257	CG9559-RA,CG9559-RB,	FBgn0000719,	fog,	1	.
CG32120-RA	AGGCTAGGCGGCAATCTCTGATCCAGGAGATCCCAGTATTAGCTAAGCAGGACGAGACACACACTCAAA	69	-	chr3L	13389862	13389931	13389862..13389931	CG32120-RA,	FBgn0002573,	sens,	1	.
CG31088-RA	TGCCCCAAAATCAGTGAAATTACGATCAAATCGCTTGACTGGGAGCTTCAGGGTCTTATTCAGCCAAGT	69	-	chr3R	11776105	11776174	11776105..11776174	CG31088-RA,	FBgn0051088,	CG31088,	1	.
CG32234-RA	GCCACTCGAGGAGTACATGCTATTCACAAAGTCCGGTGCCGACAACATAACGGTCATCAATCCGCAGG	68	-	chr3L	4644123	4644191	4644123..4644191	CG42664-RB,CG43225-RC,CG43225-RD,CG43225-RE,	FBgn0262870,	axo,	1	.
CG9214-RA	GCCTCTTTGAGTCGCACTTCTCTGCGGATGTTAGCAGCATGGGTCTGTATGTGAGCGGAACAGCT	65	-	chrX	15974389	15974454	15974389..15974454	CG9214-RA,CG9214-RB,CG9214-RC,CG9214-RD,	FBgn0028397,	Tob,	1	.
CG33286-RA	GGGCCCAAGGGCTTTGGTCAAGCGTCCAGATGCAGAGGAAGTCGTTACTCAGGTTAAGACTTTAGACTT	69	-	chr3L	20965359	20965428	20965359..20965428	CG33286-RB,	FBgn0053286,	CG33286,	1	.
CG6030-RA	GTCGATAGCTTCCAGAAGCAGTACGAAGCCCTGAAGGTGCCCTATCCCCAGGACAAGGTGTCGTC	65	+	chr3R	14921328	14921393	14921328..14921393	CG6030-RB,CG6030-RA,	FBgn0016120,	ATPsyn-d,	1	.
CG6127-RA	TGGATCGGGTCACAGTCTGCTGATAGGAGTGCTATGCGGTGTCTTTATAGTCCTGGTGGGATTCTCGGT	69	-	chr3R	22999220	22999289	22999220..22999289	CG6127-RA,	FBgn0004197,	Ser,	1	.
CG5986-RA	ACCGCATTTTACTTGCTCTGCACTCTGTTCGCACACTTCATTTGACGGTCAAGTTTAGCCGCTACCGGT	69	+	chr3R	19873538	19873607	19873538..19873607	CG5986-RA,	FBgn0043455,	CG5986,	1	.
CG30037-RA	CACCGTGCAAAGGATAACGTGATGTGGGAGGCATGGTACCGAGTCACCAACTTCAGCAGCAAGTG	65	-	chr2R	7866724	7866789	7866724..7866789	CG30037-RA,	FBgn0050037,	CG30037,	1	.
CG11975-RA	GGCTTCCAGCATCCCCGGAGAGTGCAATGAACCTCACAGAGCAAAACCCATATGGAAACGGGCTG	65	+	chr3R	4819079	4819144	4819079..4819144	CG11975-RA,	FBgn0037648,	CG11975,	1	.
CG13024-RA	ACCAAAGACCTGGATACCGTATCCATCGCTAGCTCTATGCACTTCACGATGGTCAATGGAGAGGGTGGT	69	-	chr3L	16803301	16803370	16803301..16803370	CG13024-RB,CG13024-RC,	FBgn0036665,	CG13024,	1	.
CG14735-RA	ACTTCGTGAGCGCCACCATACGGATGTCATGTTGTTGGAGGATCACGATCAGATGTGTTCGGTGGG	66	+	chr3R	7859906	7859972	7859906..7859972	CG14735-RA,	FBgn0037985,	ssp5,	1	.
CG6139-RA	GGAATGAACGATCCACCCCGAAAAAGATTCCAAAGTGAACCAATTGTGAAAAAGAAAGTGCAATCCAGA	69	-	chr2R	9417266	9417335	9417266..9417335	CG33528-RD,	FBgn0260964,	Vmat,	1	.
CG17498-RA	ACGGCATCAATTCGATCCTCTTCCAACGCGGAATTTACCCAGCCGAAGACTTTAACAACACGCAGCAGT	69	-	chr3L	5805889	5805958	5805889..5805958	CG17498-RA,	FBgn0035640,	mad2,	1	.
CG31305-RI	CAGTGAACATCTTGTGCAGAACACAGACCAAATATTCCAAAAATGTCTTTCGTTGGCAAGAAGTACAAG	69	-	chr3R	7392682	7392751	7392682..7392751	CG6783-RA,CG6783-RB,CG6783-RC,CG6782-RD,	FBgn0037913,FBgn0037912,	fabp,sea,	2	.
CG4057-RA	TTGTTGTATTTTTTGTACACCTCTGTTGACGTTTCGAGTTCCAAACGCCTTTCTCTATATGCCATGGCC	69	-	chr2R	20014355	20014424	20014355..20014424	CG4057-RA,CG4057-RB,	FBgn0041582,	tamo,	1	.
CG7405-RA	TGCCTGCAAAGTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTAAACAACATCAAGGGCGACAGGAA	69	+	chr3L	21815513	21815582	21815513..21815582	CG7405-RA,	FBgn0022936,	CycH,	1	.
CG14156-RA	TCTTGGGCTACGACACCTTTGATCGAAATTTTGGTTTCCTCATCTGGTTTCCCTTCGATGCAACAAGGA	69	-	chr3L	10237235	10237304	10237235..10237304	CG14156-RA,	FBgn0036078,	Or67c,	1	.
CG14143-RA	CCGCCACGGTCACTGTTTCATCGGTCACTGTTTCATCGGTCACTATTCCATCGGTCACTATTCCTTCGG	69	+	chr3L	11128166	11128235	11128166..11128235	CG14143-RA,	FBgn0036138,	CG14143,	1	.
CG33233-RA	GGCACTCGTAGGAGCGCTGTCCTTCTCGGTGATTTCTGCTTTAATGCCGGATCTCTATTCGCTTTCTGT	69	+	chr3L	2660038	2660107	2660038..2660107	CG33233-RC,CG33233-RE,	FBgn0053233,	CG33233,	1	.
CG14810-RA	ACAGGATCTAAATATGACCAGTGGCTCCATCAACCCAGCTACATCGACCTCGAAAGGCGCCATCCC	66	-	chrX	1713609	1713675	1713609..1713675	CG14810-RA,	FBgn0029589,	CG14810,	1	.
CG31019-RA	TCGCTGCAATCTGATGGGACAGGATATGAATCGCAACTGGCACATAGGATCCGAGTTCACGCAACCAGA	69	+	chr3R	26423864	26423933	26423864..26423933	CG31019-RA,	FBgn0051019,	CG31019,	1	.
CG1420-RA	GCAGCGGCTACTACAGAACCTGCAGCTCAAAGCCAATTCAAGGTACCAGAAGTGCCACCTGAAAGG	66	-	chr3R	24863131	24863197	24863131..24863197	CG1420-RA,	FBgn0039626,	Slu7,	1	.
CG10396-RA	ACACCCGAATGGAAGATGTGTCTGGGCGTCGCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATA	69	+	chr2R	1241941	1242010	1241941..1242010	CG10396-RA,	FBgn0033020,	CG10396,	1	.
CG15094-RB	TTTATGCTTTTCGGACGCACAAGGGTTCAACCGTGGAATAGTCGCCCCACAACGAGAACTCCGTC	65	-	chr2R	14682377	14682442	14682377..14682442	CG15094-RA,CG15094-RB,	FBgn0034392,	CG15094,	1	.
CG15023-RA	TATGGCTATGACTACCCCAAGCCGGAGATACCATTTGTGATTACCTCGACGACGGAGCCACCACC	65	-	chr3L	4461091	4461156	4461091..4461156	CG15023-RB,	FBgn0035548,	CG15023,	1	.
CG2604-RA	CCCAGAGACTGCCAAGATTCTATCCCTTTCTCAAGCCACGACCGCTGGTCTTCCGCTCTACCGAG	65	-	chr3R	1048148	1048213	1048148..1048213	CG2604-RA,CG2604-RC,CG2604-RB,	FBgn0037298,	CG2604,	1	.
CG4103-RA	GCCGGCAATGTACAGAAAGGGAACGATTCTGCTGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCA	69	-	chr2L	15008871	15008940	15008871..15008940	CG4103-RA,CG4103-RB,	FBgn0261882,	l(2)35Bc,l(2)35Bc,	1	.
CG15400-RA	GCTGCATAATGTACCTGCTGATCATTGGAATGGTGGTCTGTATGTGGCTGAGTCGCCTCTACCTGGCCA	69	-	chr2L	2815006	2815075	2815006..2815075	CG15400-RB,	FBgn0031463,	CG15400,	1	.
CG2019-RA	AGCTGGCGGAATCATGATGGCATCCAACATATTGCCCTACATACAGATTGGCGTCTTCCTGGTCGTTGT	69	-	chr3R	1676750	1676819	1676750..1676819	CG2019-RA,	FBgn0029088,	disp,	1	.
CG15531-RA	GAACACTCCGTTCCAGTACTTTGGGGACTCCCTAGCCACCTCCATGTTCGTGGGTTTCTGGCTGC	65	-	chr3R	26020996	26021061	26020996..26021061	CG15531-RA,	FBgn0039755,	CG15531,	1	.
CG11474-RA	CAAGTTCGAGCTTTCGCCACTGGAACACTTTTGGACGAGTCCCTACGAGTTCTATCGCATGCCAGAGGT	69	-	chr2R	17959398	17959467	17959398..17959467	CG11474-RA,CG11474-RC,	FBgn0034688,	CG11474,	1	.
CG17332-RB	TCCGCTTCTCCATCACACTTGCAATGATGTTTGTTCTTGCTATCTTTAAGCGCATGTTTGTTCCCCGTT	69	-	chr2L	16723628	16723697	16723628..16723697	CG17332-RA,CG17332-RB,CG17332-RD,	FBgn0027779,	VhaSFD,	1	.
CG12082-RA	GGGAAAGTACAGCAGTATTGCCGAGAACACTTTGGACACCGATCACAGCACCGGAATATCGCCGG	65	-	chr3L	3146741	3146806	3146741..3146806	CG12082-RA,CG12082-RB,	FBgn0035402,	CG12082,	1	.
CG9131-RA	TCGGAGCCACTGTCATCTCTAGCAGCACAGCACGAGTAAAGGTCAGCTCTCGTAACTTGTCTCGGAAAT	69	-	chr2L	6047871	6047940	6047871..6047940	CG34179-RB,CG9131-RA,CG9131-RD,	FBgn0085208,FBgn0029161,	CG34179,slmo,	2	.
CG15899-RB	TGGAGACGAACACGCACCAGATTATACCCATCAATCCGACGATTATACGGGTGATGAGGGTACTGCGGA	69	-	chrX	6003012	6003081	6003012..6003081	CG15899-RB,CG15899-RC,CG15899-RD,CG15899-RE,	FBgn0029846,	Ca-alpha1T,	1	.
CG15358-RA	TACGGAATATGCAGAAGCTCAGTATTTGGCTGTTACTTGCTCTTTTTGCCTGGAATGCGCACGCG	65	-	chr2L	1883116	1883181	1883116..1883181	CG15358-RA,	FBgn0031373,	CG15358,	1	.
CG31513-RA	GCTGGCGAAACAGGCATGTTGTCGTGTTAAATACGGTGCATGTCACGGCATTAACTTTAAGGCCAATGT	69	+	chr3R	3214985	3215054	3214985..3215054				0	no match
CG8995-RA	TCGATCATCAGCGACACCATAAGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTT	69	-	chrX	15696389	15696458	15696389..15696458	CG8995-RA,CG8995-RB,	FBgn0030695,	PGRP-LE,	1	.
CG12314-RA	GCATTATCACAGCTGACGACAAACTCACAGCCACGTTTCAGGCGGAATTCCAACGAATGTGGCGGG	66	-	chr2L	11989103	11989169	11989103..11989169	CG12314-RA,	FBgn0261266,	zuc,	1	.
CG9908-RA	ACTGTAGTGCGACATCTAAGTGTATAGTATTCAATCCGTTCCTCAGTGTGAATGTGCAGATGCATGAAT	69	-	chrX	16105182	16105251	16105182..16105251	CG9908-RA,CG9908-RB,	FBgn0000459,	disco,	1	.
CG11699-RA	GTTGTGCGATCCAATTCGGGCATTAGTAGTTACGACAACAATAAATCGCAATTGAGAAGGATGAGCGAG	69	+	chrX	11464682	11464751	11464682..11464751	CG11699-RA,	FBgn0030311,	CG11699,	1	.
CR30367-RA	CGTGAGTAACGGCAGGATACGAACTTTTTGGATTGAGTGGCTCATCCCCCATCCCCCATCCGTAGG	66	-	chr2R	4320772	4320881	4320772..4320814,4320857..4320881	CR30367-RA,	FBgn0011812,	Lcp1Psi,	1	.
CG8080-RA	GATGCCCTTCTGACAATCGCTTTAGACTGAATCCAGTGATGCGCCCCTAGTGCCTGGTCATCTCGC	66	-	chr2R	4977386	4977452	4977386..4977452	CG8080-RA,	FBgn0033373,	CG8080,	1	.
CG31191-RA	GGCCGGTCGGTAGGTAGTCCTACAAGCCCAAACTTCGTACAATTTTACCTTTTCAACGTCTCAGTGTCT	69	-	chr3R	16735063	16735132	16735063..16735132	CG31191-RA,CG31191-RC,	FBgn0051191,	CG31191,	1	.
CG33045-RF	CCTCCCCAGATTCCTTTCTAAAACGATGTATGTACACATGGATGCCTTCTTCATTATAGACATCCGGAA	69	+	chr3L	217795	217864	217795..217864	CG1220-RH,	FBgn0063923,	Kaz1-ORFB,	1	.
CG1771-RB	ACATGTGATCAAATGGGTCACCGTGGATCAAGTGGGTCATGTGGGTTGTGGTTCAATGTGCCATTTCAC	69	-	chrX	13109297	13109366	13109297..13109366	CG1771-RA,CG1771-RB,	FBgn0004456,	mew,	1	.
CG9580-RA	ACTGGACCATCAAGCTCTGGTCGCTAAAGGACACCAAGCCGCTGTACTCCTTTGAGCAGTACATCG	66	-	chrX	20068860	20068993	20068860..20068897,20068964..20068993	CG9580-RA,	FBgn0067861,	Sdic1,	1	.
CG17116-RA	GTCGGTGAAGAGTGTGCGGAGGATCAACTCCAAGAAGTTCAATCACTTGGACTTCCTGATTTCCGGCGA	69	-	chr2L	10702476	10702545	10702476..10702545	CG17116-RA,	FBgn0024740,	Lip2,	1	.
CG11112-RA	CCCAGAACGGGGTTGCAAGAAAGGACTAAGAAAGGATTGAGTGCGGGCATTAAGAAGTGCGTCCTTATG	69	+	chr2R	3288847	3288916	3288847..3288916	CG11112-RC,	FBgn0033164,	CG11112,	1	.
CG31158-RB	AGGTCGTTCATCAGAAGACATCGGCATAATCTCGGCAACCAGAGGATTATCTCGAATTCGTGCAGTTGA	69	+	chr3R	18433418	18433487	18433418..18433487	CG31158-RC,CG31158-RD,CG31158-RG,	FBgn0051158,	CG31158,	1	.
CG7996-RA	CCCAGCAGGACATCAAGATCCTCATCATCGTGCTGCATCCGAAGTACAGATCCTCGGCATATTACCACG	69	-	chr3R	8866381	8866450	8866381..8866450	CG7996-RA,CG7996-RB,	FBgn0003450,	snk,	1	.
CG33147-RA	ACCTAGGCTAATGCTTTCCGTGACGATCCATCCAATTTCGGTTTACACCAACTTGAGCACACTCTTTCA	69	+	chr2R	14641180	14641249	14641180..14641249	CG33147-RA,	FBgn0053147,	Hs3st-A,	1	.
CG10208-RA	CCATTTATGTAAACAGTGCCATAGAGATGTGCAAGATCATCTTCCGTATTGATGACGAATTATCAATAC	69	-	chr3R	19598740	19598809	19598740..19598809	CG10208-RA,	FBgn0039118,	CG10208,	1	.
CG16857-RA	TTGGCCAGTGAAACTAAGAGGCGATAGATGAGGAAATGGGTGGGTTGTTCACCGTGCACCAGTCC	65	+	chr2L	4331654	4331719	4331654..4331719	CG16857-RA,	FBgn0028482,	CG16857,	1	.
CG7695-RA	ACCAAGGAATGCCCGGATATCTATGACCCAGTCTGTGCGCAGATCTTCCAGGAGGAGTACTTGACATTT	69	-	chr3R	14442863	14442932	14442863..14442932	CG7695-RA,	FBgn0038631,	CG7695,	1	.
CG7120-RA	GCACAGCCACAGTGACATTTCGCAGACCAGCAGTATGGACAGCTATATGGAGGAGTATCTGCGGAAGCT	69	+	chr3L	8394249	8394318	8394249..8394318	CG7120-RF,CG7120-RD,CG7120-RE,	FBgn0035888,	CG7120,	1	.
CG1763-RA	GCTGGAGCTCTCGTCTATACACATTCAGGACAGCAGTCTGAGTCTGTTGGGTTTCCATAGCGATAGCGA	69	+	chrX	11478625	11478694	11478625..11478694	CG1763-RA,	FBgn0002948,	nod,	1	.
CG7106-RA	TCGCAATAGTTATAAATGCATCACCTTCAGGATGCGAGGAGACAGATCGTGTCGAAGCCTCGAAGCGCT	69	+	chr2L	7857157	7857226	7857157..7857226	CG7106-RB,	FBgn0040099,	lectin-28C,	1	.
CG6189-RA	CCGCAGACAGCAAACTACAATCCTTGCGAGAAGCCAGTTTGAAGTTGCTCAAAAAGATACTCGCTAGGA	69	+	chrX	526731	526800	526731..526800	CG6189-RA,	FBgn0001341,	l(1)1Bi,	1	.
CG10289-RA	TTGCTGATTTCGATGCGCACTTTAGCACATTTGGCAGCGATCTTGGTATGCCCATAAGTGCGCCG	65	-	chr3L	6163602	6163667	6163602..6163667	CG10289-RA,	FBgn0035688,	CG10289,	1	.
CG16979-RA	TCAGCATTGCTGTGACCAATGAGGAACAGATCCGAGTCCAGGTACCATTAGAGATCGAAGCCATGGCCA	69	+	chr3L	15570609	15570678	15570609..15570678	CG16979-RA,	FBgn0036512,	CG16979,	1	.
CG16813-RA	CATGGATGCGGACTCTGATGACGATGTGGTCTTCATTATGGAACAGCCGGGCCAACGCACTCCAG	65	+	chr2L	13227905	13227970	13227905..13227970	CG16813-RA,	FBgn0032490,	CG16813,	1	.
CG31223-RA	GCGGATGAAGTTTGGAGCCGGTTAACTACAGAGGAGCAAGATGAGTTCCAGAAATTGATCACCAATGGA	69	+	chr3R	16657394	16657463	16657394..16657463	CG31223-RA,	FBgn0051223,	CG31223,	1	.
CG9395-RA	GCGGCCCTAAACGACTGCCTCTACCGCACCATGTATCGCTACAAGTATCTGGCACTGGTGGATCTG	66	-	chr2L	13351979	13352045	13351979..13352045	CG9395-RB,CG9395-RC,	FBgn0032506,	CG9395,	1	.
CG3254-RB	GCACTGGGAACGCAGAGATGGTCCTTCGGGAAGTATGCGTGAGGAAGAGGACTTGGTTTCGAGTAAACT	69	-	chr2L	3405549	3405618	3405549..3405618	CG3254-RA,CG3254-RB,	FBgn0031530,	pgant2,	1	.
CG9486-RA	GTGGATTTCCCGTCGTCACATCTACCTGCAGCAACCAGAACTCCAAACGCCTTATGACCGCCCTAAA	67	+	chr2L	6256344	6256411	6256344..6256411	CG9486-RA,	FBgn0031791,	CG9486,	1	.
CG10373-RA	TTCGCAACGTCGCACGGAGCCTACGTCAACCGAGTTATCAGAAGCTCTTTCAGCAGGACAAGAGC	65	-	chr2L	18705407	18705472	18705407..18705472	CG10373-RA,	FBgn0032704,	Jwa,	1	.
CG7831-RA	TGAGCAACGAGCAGAAGGACATGGAGATTCGAATGGCCAAGAACAACAAGAACGACATCTACGTGTCCA	69	-	chr3R	25630684	25630753	25630684..25630753	CG7831-RA,	FBgn0002924,	ncd,	1	.
CG10492-RA	CGCCTTTGCCACGTCTCTTAGTTCCGTAAGCCTCTCAATTCGCGTTAATTCAATTCGAGGATCGGCAG	68	+	chr2L	19057652	19057720	19057652..19057720	CG10492-RA,CG10492-RB,	FBgn0032748,	CG10492,	1	.
CG5937-RA	CCTCGCAGTGCAAGTTGTCAGACGACCGGAGCTACTCGTTTCTCTTGTACCCGCTTAACAATGGCTTCA	69	+	chrX	5941401	5941470	5941401..5941470	CG5937-RC,CG5937-RD,	FBgn0029834,	CG5937,	1	.
CG8519-RA	TCAACTATATACGCCGTGCCAAATCCGATCTTCAGTCCGATACACCCGTCCAACTTTGTGCCAACAA	67	+	chr3L	6701727	6701794	6701727..6701794	CG8519-RA,	FBgn0035711,	CG8519,	1	.
CG14707-RA	CATTACTGGGAAACCCCGTACTCGCAGCCGTACTTCGACAACTCCTCGAGGCGTGAGGTCACCGC	65	-	chr3R	7364880	7364945	7364880..7364945	CG33512-RB,	FBgn0053512,	dpr4,	1	.
CG17707-RA	TGCCAACCGTAAATGCAATACTGTCGTATCGCGTTATGTGGCCACTTTCACGACTCACATACTGTGCCT	69	-	chrX	39577	39646	39577..39646	CG17707-RA,CG17707-RB,	FBgn0025835,	CG17707,	1	.
CG7959-RA	CACCAGCAGTTAGAGACTCAATTCGCGAATACTCAATATTTCATGGACAACTGAGAATGCTCCGAACCC	69	+	chr3L	1640702	1640771	1640702..1640771	CG7959-RA,	FBgn0013753,	Bgb,	1	.
CG8254-RA	ACACCCTGTATTCTTGCCCCCAGTTTCATTCGCGCAATCGGTCTAAATCTTTTTTGGGTTTTTTGCACT	69	+	chr3L	7944150	7944219	7944150..7944219	CG8254-RA,	FBgn0041156,	exex,	1	.
CG10296-RA	CCGACGTCCTGGAACTCAACTTTATGGAGTCCCTAATCCTGTGCAGAAAAGAATTGGCCATCAATGCGG	69	+	chr3R	2175538	2176040	2175538..2175589,2176022..2176040	CG10296-RA,	FBgn0037436,	Hr83,	1	.
CG11124-RB	GCTGACATGATATCAACGATTTGTAGACAAGATGATTACATTACCTGATGCGCACATCACATTAATTAT	69	+	chr2R	3331201	3331270	3331201..3331270	CG11124-RB,CG11124-RA,CG11124-RC,	FBgn0033170,	sPLA2,	1	.
CG31765-RA	TCCCAGCAACAACTCCTCAATTAAAACCCCACCTTACGCCTATGCCAGGAAGGAGTCACTCTACTCGGT	69	+	chr2L	13962141	13962210	13962141..13962210	CG42282-RD,CG42282-RE,	FBgn0261514,	nimA,	1	.
CG4986-RA	GGAACGCACTTTTTGATCCTGCTTCTGTTGTGTGGAGTCCTGGGATCTAACGGTGTGACGCCCGACATT	69	-	chr3R	21655331	21655400	21655331..21655400	CG4986-RA,	FBgn0011670,	Mst57Dc,	1	.
CG4594-RA	ACAGACGTGGAGCGACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTGCCCTCTATGGAACA	69	+	chr2L	9920704	9920773	9920704..9920773	CG4594-RA,	FBgn0032161,	CG4594,	1	.
CG12194-RA	TGGTGGAGAATTGGCCAAACTAAGCGATATAGTCACCTTCAAGCTGGACTTCTGGATGGTGTCCGTGGT	69	+	chr2L	4840212	4840281	4840212..4840281	CG12194-RA,CG12194-RB,	FBgn0031636,	CG12194,	1	.
CG2830-RA	TGCAGGGCAAACCCAAGACAGGACTTTTGGAAATGCGCATCCAGCAAATTCAAGATGAACTGGCGGAAA	69	+	chr2L	729561	729630	729561..729630	CG2830-RA,	FBgn0011244,	Hsp60B,	1	.
CG17054-RD	GAACGATGTGACGCAATCTGCTGCCATAACCGCAGTAGACGCTACTGAAACTCCAAAGGCAGCCG	65	+	chr2R	9023977	9024042	9023977..9024042	CG17054-RB,CG34438-RG,	FBgn0259876,	Cap-G,	1	.
CG10559-RA	CATCTCAAGGGTCCGTACCCCCAGAACTACTTGCAACCCACGTACGCCGATACCATGAAGGAGAG	65	-	chr3R	21141177	21141242	21141177..21141242	CG10559-RB,	FBgn0039323,	CG10559,	1	.
CG18666-RA	CTGATATTTCAAGTGCCCCCTCGGTTGTCATTGCGTTGCCAAGTAGCGAGACCCTCGTCGTGACC	65	+	chr2L	11035002	11035067	11035002..11035067	CG18666-RA,	FBgn0040967,	CG18666,	1	.
CG13369-RA	CCCTCCTCCACCGAGGTCAAGTAATCTCGAGTGATAAGCGGCAGTGAACTCTCGTCTCTGCTTCTCCAT	69	+	chrX	517589	517658	517589..517658	CG13369-RA,	FBgn0025640,	CG13369,	1	.
CG13348-RA	TGCTAATTCCCGCCGATCATGTGAGTCGACAGAAATCCGATTGCTATTACATCAATCAGCAGCATCTGC	69	+	chr2R	9856253	9856322	9856253..9856322	CG13348-RA,	FBgn0020766,	Aats-phe,	1	.
CG33013-RB	TGGCACGTTGACTCACAGTGATTCGGGATACTACTTCATATACCAGGATAGACGCGGTCTGAGTCCGCT	69	+	chr2R	8253415	8253484	8253415..8253484	CG33013-RC,	FBgn0053013,	CG33013,	1	.
CG15120-RA	ACGCATTGAGCACACGAAACCTGGAGGTAATGTGCACGACATTGAAGATAATCCAACAGCTGGTCATGT	69	+	chr2R	15387405	15387474	15387405..15387474	CG15120-RA,	FBgn0034454,	CG15120,	1	.
CG4404-RA	TCTCCGTGAAGAAAAAAAGCCACAAGAATCGAAGAAAACACACCCAGTTGATAGAAAACGCCAAC	65	-	chrX	12797890	12797955	12797890..12797955	CG4404-RA,	FBgn0030432,	CG4404,	1	.
CG14076-RA	GCGACAACCAAATGGATCATTCGATGGTCTCATGGGACGTTTTCAACGCTATGAACTGGACTTGGCCCA	69	-	chr3L	18902882	18902951	18902882..18902951	CG14076-RA,CG14077-RB,	FBgn0036829,FBgn0036830,	Ir75d,CG14077,	2	.
CG13316-RA	GGCGGAGGTTCAGTGAATGGGTTCCATCAGGCCGATAAGGATCGCAATTACACTTTCCTGAGGCTCAGT	69	+	chrX	3594478	3594753	3594478..3594497,3594703..3594753	CG13316-RC,CG13316-RA,CG13316-RI,CG13316-RJ,CG13316-RD,CG13316-RE,CG13316-RF,CG13316-RG,CG13316-RH,	FBgn0023215,	Mnt,	1	.
CG6768-RA	GCCGCGAAAAGTTTGAATCCCTGCTGACCCTCTTCATGCAATCTTTGGCTGAAAAGAAGACCACCGAGC	69	+	chr3R	19180048	19180117	19180048..19180117	CG6768-RA,	FBgn0020756,	DNApol-epsilon,	1	.
CG12350-RA	ATCATTCATCCCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATTCTGATCCTGGATGGGGAT	69	+	chr2R	7224697	7224766	7224697..7224766	CG12350-RA,	FBgn0043470,	lambdaTry,	1	.
CG31275-RB	CTAATGCTACAAACGATTCATGCGAGTTGAACGATTCCGGAAGAAATACAAAGTTATTGCTGCAAAACC	69	-	chr3R	12576606	12576675	12576606..12576675	CG31275-RB,CG31275-RA,	FBgn0063261,	CG31275,	1	.
CG12964-RA	ACAATACAACCGCTACCTCCCTCTGAAGATCAACGGAGCACAGTTCCCGATTCCCGATAGCGAGGAG	67	-	chr2R	11374266	11374333	11374266..11374333	CG12964-RB,	FBgn0034022,	CG12964,	1	.
CG17211-RA	GCCCAATCTCGATGAACTAATCGTTGACAAGGCGAACAAAAAGCCGATTGAAGAGCATATCGAGACCGT	69	+	chr2L	12128566	12128635	12128566..12128635	CG17211-RA,	FBgn0032414,	CG17211,	1	.
CG10151-RB	ATACATCCACTTTGGCTGACATGTTACAGGGTAACAAACCGTCGAATCTGCTTCCTTTCACCGGG	65	-	chr2R	10642026	10642091	10642026..10642091	CG10151-RA,CG10151-RB,CG10151-RC,CG10151-RD,	FBgn0033960,	CG10151,	1	.
CG12843-RA	GGCCGCATTCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGTCTGCTGGTTGCTTGTCAT	69	+	chr2R	2923837	2923906	2923837..2923906	CG12843-RA,	FBgn0033130,	Tsp42Ei,	1	.
CG13321-RA	GCGAGTATATAACATCACGTTCCAGACCTAAATCAACATACAAAAAAAGCACACAAATACAACATGGGA	69	+	chr2R	8841098	8841167	8841098..8841167	CG13321-RA,	FBgn0033787,	CG13321,	1	.
CG8332-RB	GGCATCCGTGCGGGTATCGAACAAAATGCCATACGAAACACCATTAGAAGACTTCGTTGCACGGCTGCT	69	-	chr2R	12458590	12458659	12458590..12458659	CG8332-RB,	FBgn0034138,	RpS15,	1	.
CG2189-RA	TCAACAGCAACAATCCGATCTCATGACCAATCTTCAGCTACACATCAAGCAGGACTACGATCTGACGGC	69	+	chr3R	2627585	2627654	2627585..2627654	CG2189-RA,	FBgn0000439,	Dfd,	1	.
CG3723-RA	ACTTCACCCAGGAAACACTCGAGATGTCAGGCAAGGAGGCAGAGTTCAAAGCCATTCTCTTCTCCCTCT	69	-	chr3R	16853096	16853165	16853096..16853165	CG3723-RB,	FBgn0013812,	Dhc93AB,	1	.
CG11718-RA	GGCTCCACAGTTAGTAAGTCCTTTGTGCAGCATCTGAGAAAGCCCTCTCACAAGCAGAAACGAGCGCC	68	-	chr3R	4190990	4191058	4190990..4191058	CG11718-RA,	FBgn0259182,	CG42286,	1	.
CG1100-RA	TGACGGAAAAGCTGGTTTGTGCCGTGCTTTATTGCGTTTTAGCTCCCTTCGACAACGAACAGAGCGACA	69	+	chr3R	1616425	1616494	1616425..1616494	CG1100-RA,	FBgn0028690,	Rpn5,	1	.
CG13723-RA	ACCACGCGATCTACTTCTACGTGTCACTCTTTTCGATGTCCTACTGCGTTGTACTGTGGCAGGTGCG	67	+	chr3L	17257648	17257715	17257648..17257715	CG13723-RA,	FBgn0036705,	CG13723,	1	.
CG14898-RA	ATTGACCCCAAGACTGTAGAAATGTTGAAAGACGACCAAGTAGTCCAACTATACGAGCTGATGCT	65	-	chr3R	12307635	12307700	12307635..12307700	CG14898-RA,	FBgn0038437,	CG14898,	1	.
CG6856-RA	AGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAATGGGTAAGCAGTTGGAGATTGA	69	+	chr3L	18861416	18861485	18861416..18861485	CG6856-RA,	FBgn0036819,	dysb,	1	.
CG10241-RA	TCACCGAGCATCGCTACGGGAATATGCTGGATATATTCCTCTTTGGATTTCCCAAGTTATCGCGCCGCT	69	+	chr2R	10762118	10762187	10762118..10762187	CG10241-RA,	FBgn0015714,	Cyp6a17,	1	.
CG2175-RA	TGACACCCGGCATGTTGGAGAGACTTCTTCGGATCAAGATGGATTTCCAGCGTAGATTTCCCCATTTGT	69	-	chrX	7761598	7761667	7761598..7761667	CG2175-RC,CG2175-RA,CG2175-RB,	FBgn0000427,	dec-1,	1	.
CG15734-RA	GCAGCGAGAATGCATTGATTTTGGATAACGAAAGTCGCATCGGATGTGTAGCCGTAAATGGGACAAGGA	69	-	chrX	11980695	11980764	11980695..11980764	CG15734-RC,CG15734-RD,	FBgn0030374,	CG15734,	1	.
CG17178-RA	AGAGCAATGAGGCGTACCAGAGTATTGCTGGTGATCGCAATATTACGGATGGAACAATCGCCATCGGCA	69	+	chr2L	12929300	12929369	12929300..12929369	CG17178-RA,	FBgn0040506,	ACXE,	1	.
CG15603-RA	TCGACTCGACTGCCACGAGACACCAGATAGCGAGAGAGAACCCTTCAGTTCAGGAGCTCTTCCATTTGA	69	-	chrX	15843376	15843588	15843376..15843409,15843552..15843588				0	no match
CG8320-RA	ATAGCTGACACACAACTTGCAATCCCACCATGGCTCCCCAGCAAAAGGGTAAACAAGGCACGAAG	65	+	chr2R	11880182	11880312	11880182..11880217,11880282..11880312	CG8320-RA,	FBgn0034059,	CG8320,	1	.
CG31735-RA	GGCACTTTAGGGACGCCAGATTCGTTACCCATATTCCCTATTCCGGACCCAACTTCGATGGACTATGTT	69	+	chr2L	15896447	15896516	15896447..15896516	CG31735-RA,CG31735-RC,	FBgn0051735,	CG31735,	1	.
CG12995-RB	CGCCGCGTCGGTTAAAACACTTCTACCACATCCAACCATGTTCACCTATCGCCTGAAACTGATGATCCT	69	-	chrX	17103962	17104031	17103962..17104031				0	no match
CG8260-RB	TGATGGCGAGGTTAATCCGTGCGATATGGGCGAAATTTTGAGGGCCGCATACTTCCTGGACATTCC	66	+	chrX	15650930	15650996	15650930..15650996	CG8260-RA,CG8260-RB,	FBgn0030684,	CG8260,	1	.
CG3876-RA	GCCCTCTTCTGCTTGTCGTTTTGGACCTCTGCGGATCATTACGAGACCCACAGAAACGCATTTGTGGTG	69	-	chr2L	818893	818962	818893..818962	CG3876-RA,	FBgn0031284,	CG3876,	1	.
CG5018-RA	ACATTTGTCGCAGCATGCTCCCTTTCTGAAAGGTTCCGTAGCTTCCATGGCAATCAGTAAAAAGCTTTT	69	-	chr3L	16220617	16220686	16220617..16220686	CG5018-RA,	FBgn0036578,	CG5018,	1	.
CG1718-RA	TACGCGCGCCAATCAGTGAGCTAGCCCCCAAAAAGATCCAACACCCAGTTGATAACACCACATGG	65	-	chrX	21164318	21164383	21164318..21164383	CG1718-RB,	FBgn0031170,	CG1718,	1	.
CG2249-RA	GCTCGCAAATAACATGGACTTGGTAGAACGACGTCAGAAACCGATGTACACGCAAAGTTGCCAACTGGA	69	+	chr2R	5937713	5937782	5937713..5937782	CG2249-RA,	FBgn0040773,	CG2249,	1	.
CG32379-RA	CAACATCCGGCGATACGACAGACTTTGCGTTTGGAGTGGTGAATGCCACAGTTGCCATGACCATG	65	+	chr3L	7391025	7391090	7391025..7391090	CG32379-RB,	FBgn0052379,	CG32379,	1	.
CG7734-RD	AGATCCGAGAGCGAGAGAAGTGTGTTATTTTTAAGGCCTAGCCCCGAAAATGAACCTCCAAACCGAACC	69	+	chr2R	7104280	7104349	7104280..7104349	CG7734-RA,CG7734-RB,CG7734-RC,CG7734-RD,	FBgn0003396,	shn,	1	.
CG6201-RA	GCGAAGAGCCCAAGCACCTAGACTCTACAAGACGGGACCCATCTGGCAGTACAACAGCGAGCTAGTTAT	69	-	chr2L	11111272	11111341	11111272..11111341	CG6201-RA,	FBgn0032343,	CG6201,	1	.
CG6908-RA	TCGCCAGCTGGAAAGTGTTCTATAAGGAGCGCAACACCTACGGACAATACATTCCCGAGTTTGAGCAGA	69	-	chr3R	7515210	7515279	7515210..7515279	CG6908-RA,	FBgn0037936,	CG6908,	1	.
CG6817-RA	GGGCATGTCGGTAAAGTCGGCCGTCTACTACAACCTGTTGACTGGAGTCCTGAGTTTCATCGGCATGAT	69	+	chr3L	8525811	8525880	8525811..8525880	CG6817-RA,	FBgn0024236,	foi,	1	.
CG32530-RA	TGAAAGCCTTTAAATCATTGGATTGGTAGTTATCTGTATACGCAATGTGGTACAATAATTTTTAAGCGG	69	.	.	.	.	.	CG33931-RA,CG33932-RA,	FBgn0066304,FBgn0066303,	Rpp20,CG33932,	2	.
CG13420-RA	TGCAATCAGCTGCACGAGAGACTACGAAACCCATTACCACAAGATGATCATCTCTGGTACGGAAAGTGT	69	+	chr3R	17594468	17594537	17594468..17594537	CG42335-RC,	FBgn0259237,	CG42335,	1	.
CG2233-RA	ATGCGTACTTGGCAAAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGCAGTTTGGTCCAGG	69	-	chrX	7930584	7930653	7930584..7930653	CG2233-RA,	FBgn0029990,	CG2233,	1	.
CG2893-RA	CCTGGTCTCCCTGTATGCCGTCTATCTTGCGGTCATGTATTTCGACAAAACTTTCCAAAAGTGCGCCAA	69	+	chrXHet	9600	9669	9600..9669	CG2893-RA,CG2893-RD,CG2893-RE,CG2893-RF,	FBgn0040030,	CG2893,	1	.
CG31200-RA	TGGATAATGGAAAATTTGAAGTAGAAAGTACAACTTGTTATGTGAATACTCAATAAACTATTCAACATG	69	-	chr3R	16569955	16570024	16569955..16570024	CG31200-RA,	FBgn0051200,	CG31200,	1	.
CG1900-RB	CTGACCACGTCCCAGTGCTTCAATTCACTGACCCAGAGCTCCAAGAGCAAGAACCGCTGCAAGAC	65	-	chrX	12354438	12354503	12354438..12354503	CG1900-RA,CG1900-RB,	FBgn0030391,	Rab40,	1	.
CG1759-RA	GCCGTTGCACCTGGAATATTGCACGTTGTTAATTTTTGTGATTGTATATTCCTGGTTTCGACACGCGCC	69	+	chr2L	20782537	20782606	20782537..20782606	CG1759-RA,CG1759-RB,	FBgn0000251,	cad,	1	.
CG15552-RA	CACAGAGAGAAAGAAAGCATCGGTATTCCTAAACTTATTTGGGGATTCAATCGGAGAAATACAATGGCA	69	+	chr3R	26908885	26908954	26908885..26908954	CG15552-RA,	FBgn0024288,	Sox100B,	1	.
CG13494-RA	TCATGGATGACACATTATCAACGGTAGAAGGCGGGATGACGGAAACATCCTCATGGAGCACCACGAT	67	-	chr2R	17842212	17842279	17842212..17842279	CG13494-RA,	FBgn0034671,	CG13494,	1	.
CG8882-RA	GTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTACAAAACGGAGCGTCCAGTAAACTCGGCGG	65	-	chr2L	4966749	4966814	4966749..4966814	CG8882-RA,	FBgn0015834,	Trip1,	1	.
CG8010-RA	AGGGTTCAAGTGCAAGTTCCTAGCTGTGTTGCTTCACAATCAACAAACAAAATATCGTGTGGGCTCTCA	69	-	chrX	19160875	19160944	19160875..19160944	CG8010-RA,	FBgn0031008,	CG8010,	1	.
CG13004-RA	CAAAAAAAACTGTAACAACGACATCGATAAGTGGTGTTCTGGAAACTCTGGTGTTTTCGAAAGTTCCCA	69	-	chrX	16721227	16721296	16721227..16721296	CG13004-RA,CG13004-RC,CG13004-RB,CG13004-RD,	FBgn0030797,	CG13004,	1	.
CG15543-RA	CAAGTGCGGGATCATCTCGGAGCTCACCAAAACTCCCTATGTGCTGGGTAAAAAATACGGCGAGGCAAA	69	+	chr3R	26569456	26569525	26569456..26569525	CG15543-RA,	FBgn0039799,	CG15543,	1	.
CG8671-RA	GGAGCGAATGCGTTTTCAACAGCACCATCAATTGCGGAAGAACTCCAACGCATCAAACGGGTCGG	65	+	chr2L	21277898	21277963	21277898..21277963	CG8671-RA,CG8671-RC,	FBgn0032938,	CG8671,	1	.
CG7787-RA	GCAGCGATGCCAAACACGTGTGTCCAGTCTCTTGCAATCCATTTTATCATGCCACTTATCCGCTAATCT	69	+	chr2L	8320849	8320918	8320849..8320918	CG7787-RA,	FBgn0032020,	CG7787,	1	.
CG14612-RA	CCCGATCCTGGATATAAGCCTACGTTACGCAGTCAAGATAAGGCCGCCCTGAAGGAACTGCTGCA	65	+	chr3R	2919875	2920002	2919875..2919922,2919984..2920002	CG14612-RA,	FBgn0040670,	e(y)2b,	1	.
CG13284-RB	GCGGCCATCTACCTCGTAGGACTGCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATTGGTC	69	-	chr2L	16846832	16846901	16846832..16846901	CG13284-RA,CG13284-RB,	FBgn0032614,	CG13284,	1	.
CG14036-RA	AGACCTGCAAGTACAACGCCACACACCGAGTCCAGGACATGGAGAAGCATCTGAAGGAGTGTGACTACT	69	-	chr2L	5054768	5054837	5054768..5054837	CG14036-RA,	FBgn0031677,	CG14036,	1	.
CG31807-RA	AGCCCAGACTCGCTCGTTGATGAGGATGCTGAAGAAGGATGTTGTTGAGCAGCTCTTAGCGGAAAGGAA	69	-	chr2L	16682283	16682352	16682283..16682352	CG31807-RA,	FBgn0051807,	CG31807,	1	.
CG8721-RA	AGGCCAAGAACCTCTTCAAGTTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATTGGC	65	+	chr2R	3893327	3893392	3893327..3893392	CG8721-RA,	FBgn0013307,	Odc1,	1	.
CG6343-RB	TGGTGCGAAGCCCGTATCAAGTACTGCCATGAGAAGCCCGATCTGATGAATTACTTCAATGTGCCGCGT	69	+	chr3R	17854735	17854804	17854735..17854804	CG6343-RA,CG6343-RB,	FBgn0019957,	ND42,	1	.
CG9021-RA	AGCTGCTCCATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACCTACTACGCGGAGTACGTGCG	67	-	chr2L	5903938	5904005	5903938..5904005	CG9021-RA,	FBgn0031747,	CG9021,	1	.
CG17221-RA	GGGACTGGGAGTAGGAGCGCTTAAGAATGTGTTCGATCTGTTCCAGACCAACGTAAGATCCGTCACGCA	69	+	chr2L	3041243	3041312	3041243..3041312	CG17221-RB,CG17221-RA,	FBgn0031500,	CG17221,	1	.
CG15211-RA	TAAGCCAAGCCAAACTATAAACAGCAACAATATGGTCGAGACCGTTGTCAATATCGAGCGCACAACAAC	69	+	chrX	10667000	10667069	10667000..10667069	CG15211-RA,CG15211-RB,CG15211-RC,CG15211-RD,	FBgn0030234,	CG15211,	1	.
CG15270-RA	ACAACGACACGCATAACTGTGAGATAATATCGTCCATTGTTCCTTCCATATAAAGGATAACGCCTTCGC	69	+	chr2L	15096479	15096548	15096479..15096548	CG15270-RA,CG15270-RB,CG15270-RC,	FBgn0028879,	CG15270,	1	.
CG1402-RA	CGACTGATGCAAGGCTCCGAGAGTACACCCAAAGCTCCACTAGGTAATAATGCGCGACCAGTGCAAAGT	69	+	chrX	7733765	7733834	7733765..7733834	CG1402-RB,	FBgn0029962,	CG1402,	1	.
CG33113-RA	TTCTTGTTGAGGATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCACCTACGTGGGTG	69	-	chr2L	4994540	4994609	4994540..4994609	CG33113-RE,CG33113-RD,CG33113-RA,CG33113-RC,CG33113-RG,CG33113-RF,CG33113-RB,CG33113-RH,CG33113-RI,CG33113-RJ,CG33113-RK,	FBgn0053113,	Rtnl1,	1	.
CG4666-RA	ACCCATCTTCCATCCGTACAAGATTCAGACCAAGCTGATCTGGTGGGACGACAAGGCCATTTACCTGGA	69	-	chrX	5970598	5970667	5970598..5970667	CG4666-RA,	FBgn0029838,	CG4666,	1	.
CG2699-RA	ACTGCCCTCCGCTATCCCCTCAAGAATTAGACGGCTCCAGAAACAAAAGAAAAACAAAGGGAAAACGTT	69	+	chr2L	303204	303273	303204..303273	CG2699-RA,	FBgn0020622,	Pi3K21B,	1	.
CG17018-RD	AGTCACATTGGCGAGCATAATGGACTTCCAATCAGTCAGCCCCCCCTGAAACGAAGCGCAACAATCAAT	69	+	chr2L	22367654	22367723	22367654..22367723	CG17018-RA,CG17018-RC,CG17018-RD,CG17018-RE,CG17018-RF,	FBgn0039972,	CG17018,	1	.
CG8401-RA	CTGCACAGGATGGAACACATCAGAAGGGGATCGGGTCTGGTTTCCAGGGAGCATGGTGTCCAGGG	65	+	chr2R	11916440	11916505	11916440..11916505	CG8401-RB,	FBgn0034069,	CG8401,	1	.
CG14565-RA	CGGAGGTTCCGGAAACCACAACTAGTGCGGTTATCCGGGATCAAGAGGGGAATGTCACCACCGCG	65	-	chr3L	21737193	21737258	21737193..21737258	CG14565-RA,	FBgn0037129,	CG14565,	1	.
CG6895-RA	GGCTGAGCAAGCGAAAGATATCCCATTTCGGCGATGACTTTCACACCTACAGCTTGGATTGGAGCAGCA	69	+	chr3L	18670434	18670503	18670434..18670503	CG6895-RA,	FBgn0040323,	GNBP1,	1	.
CG6805-RA	CTGAAGGAGCGCATCGAAGACTATCACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATATCGC	69	+	chr2R	12893733	12893802	12893733..12893802	CG6805-RA,CG6805-RB,	FBgn0034179,	CG6805,	1	.
CG32491-RJ	CCGAAAACTTAAGATCGGAGAGTTCTCCTTCACTCGAAACAAGACCTCGGGATTGAAAACTTATTGGTC	69	-	chr3R	17182974	17183043	17182974..17183043	CG32491-RJ,	FBgn0002781,	mod(mdg4),	1	.
CG10959-RA	GCGGAACCCATCGAGATGCTTTTCACCTACTGACCGAACTGAGTGGAAACCTCCTGTCGCCTTAAGCTC	69	+	chrX	8044297	8044366	8044297..8044366	CG10959-RA,	FBgn0030010,	CG10959,	1	.
CG32422-RA	TTATGTGGTGAATGCCATGATAGCAACCGCCTGGGATATCGCTCGAAGGTTAGTCCTCCAGCGCA	65	-	chr3L	5499181	5499246	5499181..5499246				0	no match
CG7945-RC	GAGAACTCTGCTTACGTTGTAAGTGCCCGTTCAAGAAGTCCACCAAAGTGTCTACATCAGCAGTTGGGA	69	-	chr3L	15513616	15513685	15513616..15513685	CR43159-RA,	FBgn0262689,	CR43159,	1	.
CG17262-RA	CGCGATAGTCTGGGTGTCTACGATCCGGTGGACATACACAGTCGGGGATTGCTAAAGGTCCATCTGAGA	69	-	chr2L	3039323	3039392	3039323..3039392	CG17262-RA,	FBgn0243513,	cnir,	1	.
CG18180-RA	CCCATGTCGACTTCAACGGACTGATCAACAAGATCCCTCTGCCAAGCATGAACGAGCAGAACGAC	65	+	chr3L	9634522	9634587	9634522..9634587	CG18180-RA,	FBgn0036024,	CG18180,	1	.
CG7263-RB	GCTCCCTGGCACACTATTCCAGAGAGAACAATGGCGGTAAAGTGTACCAGGTGTTCCAGGAAAATGCCA	69	+	chr2L	2153939	2154008	2153939..2154008	CG7263-RA,CG7263-RB,	FBgn0031392,	AIF,	1	.
CG8396-RA	GCAAGCAAGAAGGCGAAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGGTGCT	69	+	chr2L	8211570	8211639	8211570..8211639	CG8396-RA,	FBgn0015299,	Ssb-c31a,	1	.
CG2910-RB	AGCGCCTTTCAAGAGCTCAAAGCCGCCATATGATGAAAGTGCGTTGGAGTACAGACGTCCGGAATACGA	69	+	chr2R	3851829	3851898	3851829..3851898	CG2910-RB,CG2910-RA,	FBgn0027548,	nito,	1	.
CG17759-RA	CCTCAGCGAGATGCAATAACGGCCCGAGAGTTTATACTGCGAATGTTTGTAGATTTAAATCCAGATTCC	69	+	chr2R	8505949	8506018	8505949..8506018	CG17759-RA,CG17759-RG,CG17759-RC,CG17759-RE,CG17759-RH,CG17759-RI,CG17759-RK,	FBgn0004435,	Galpha49B,	1	.
CG12831-RA	GCGTTTTCCTGCACAATCTCTTCGAGGCGATGGTCAACGACTTTAGGTTCTTTAGCCGCCACATGAGCA	69	-	chr2R	2960709	2960778	2960709..2960778	CG12831-RB,	FBgn0033141,	CG12831,	1	.
CG31832-RA	GGCCAGAGTTCACCACACACGTGTCCTAGTGGCAGTCCAAATGGAATTCACCAGCTAATGTTGCCAGAA	69	-	chr2L	15031600	15031669	15031600..15031669	CG31832-RA,	FBgn0051832,	CG31832,	1	.
CG6227-RA	CGCGCGGTTTGGATGTTAAGGATCTCATACTGGTGGTCAACTACGATGTGCCCAACCACTACGAGGACT	69	+	chrX	15242430	15242499	15242430..15242499	CG6227-RA,	FBgn0030631,	CG6227,	1	.
CG1869-RA	TGGTGCTGAAGATCGTGTGGCCTACGTCAGTCTGCTAAAGGAATTGCGAGTGGCTTTTGAGGGTG	65	-	chr3L	3092684	3092749	3092684..3092749	CG1869-RA,	FBgn0035398,	Cht7,	1	.
CG32577-RA	CCAACGACGAAACGCTTGATATGAGGAAACGAACAAAATTTGATTACAGATTGCCGTTTACCGAA	65	-	chrX	16012355	16012420	16012355..16012420				0	no match
CG4946-RA	ACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCAAGAATTTGACATGATTTCGGCCAAGGAAT	69	+	chr2L	10266386	10266455	10266386..10266455	CG4946-RA,	FBgn0259482,	Mob3,	1	.
CG7201-RA	CCAACTCCCATGCGAACCCCTATTGTTGACCTCGTCTAGATGTTAGGATTACGATTGAGTTGAGCGCGT	69	-	chr3L	8283606	8283675	8283606..8283675	CG7201-RA,	FBgn0035865,	CG7201,	1	.
CG8386-RA	ACGGCAAGACAGCGAAGATGTACCGTGGTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTG	67	-	chr2R	11894640	11894707	11894640..11894707	CG8386-RA,	FBgn0034061,	CG8386,	1	.
CG7219-RA	CCAGGATGATTCTGGCCAACGCATTGTACTTTAAGGCATTCTGGGAAACGGACTTTATAGAGTCAGCCA	69	-	chr2L	8005339	8005408	8005339..8005408	CG7219-RA,	FBgn0031973,	Spn28D,	1	.
CG32245-RB	CGGGTATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCGACCAGGCTACT	65	+	chr3L	4586630	4586695	4586630..4586695	CG42540-RD,CG42540-RB,CG42540-RC,CG42540-RF,CG42540-RG,	FBgn0260657,	CG42540,	1	.
CG3766-RA	TGGCCCTCAAAGTCCAAGCCTCCCGATATGCTCAACGATTCCATTCTGAACGAAAGCAGAAGTTGTCCT	69	+	chr2L	9433989	9434058	9433989..9434058	CG3766-RA,	FBgn0011232,	scat,	1	.
CG4695-RA	ACAAAATCTCATTGCCATTGAGTCACTCCGAGGAGATGTACGACGAGAAGAATCCCGATGTTGTGCCCT	69	+	chr3R	6871188	6871257	6871188..6871257	CG34114-RB,CG34114-RC,	FBgn0083950,	CG34114,	1	.
CG11060-RA	GGCCAAGAAGCCTCGCGATAGACCCTGGGATTTAAGTATCGAGACCCTGCGTCACTTTATTGGCAAGCA	69	+	chr2R	3065200	3065269	3065200..3065269	CG11060-RA,	FBgn0033149,	CG11060,	1	.
CG12236-RB	CCCAACCAGCCCATTCCCTCGTGTTTCGATCAAAGGCCCCAAAACGAAAACTAGCCAAATTTGTCAACT	69	+	chrX	5804818	5804887	5804818..5804887	CG12236-RB,	FBgn0029822,	CG12236,	1	.
CG12310-RA	CCAGGTTCGGAGGTCATGGTCCAGTTGTGATCAGGCGTCACCCTAGTCTTGTCTAGGTCAAAGCCCTAT	69	-	chr3L	15043507	15043576	15043507..15043576	CG12310-RA,	FBgn0036467,	CG12310,	1	.
CG31728-RA	AGGCGACCCACTTATCCTAGTTATCCCTCGCCAGTTACAACCACGACAACTACGAGACGTCCTGTGAGC	69	+	chr2L	13256292	13256361	13256292..13256361	CG31728-RC,	FBgn0051728,	CG31728,	1	.
CG8243-RA	CCACCACCTCCTCAGTACCGTCAAATCTGAACCAGCAGTTTGGGAATCTTAATATCGGTAATGTGTGGC	69	+	chr2R	4812134	4812203	4812134..4812203	CG8243-RA,	FBgn0033349,	CG8243,	1	.
CG2520-RA	ATTTGGCCGACAATTTGCAGAGAAGCTTGCTTAGAGGGTTGGCTTACCAAATCGAATGTATCTTGTAGA	69	+	chr3R	3026236	3026305	3026236..3026305	CG2520-RA,	FBgn0086372,	lap,	1	.
CG16995-RA	ATTCTCCGTCGTTTCAAGGTAACACCGGCCATTTCACTCAGGTGGTCTGGAAGAGCTCCACCGAG	65	+	chr2L	2308443	2308508	2308443..2308508	CG16995-RA,	FBgn0031412,	CG16995,	1	.
CG14354-RA	CGAAGCAAGGAACAAGGCTGTAAGGGACCGAAGATCCTACGAGGAGGACATCGGTGGAACTTTTGGG	67	+	chr3R	21642032	21642099	21642032..21642099	CG14354-RA,	FBgn0039376,	CG14354,	1	.
CG3240-RA	ATAGCCAGGAGGAGATATTCATTCAGTTCTTCATAATTCCTTTGCTCAACACTGATTAAACCGAAACTA	69	-	chr2L	2573472	2573541	2573472..2573541	CG3240-RA,CG34314-RA,	FBgn0026778,FBgn0085343,	Rad1,CG34314,	2	.
CG5906-RA	GGGCCTGGTGTGCCACTATTGGTACCAACATCTGGACTACTTGTTTCCGAAGCGCACCTATAAGGTGGT	69	-	chr3L	11864047	11864116	11864047..11864116	CG5906-RA,	FBgn0036217,	CG5906,	1	.
CG5885-RA	CGAACTGAAAAATGGGATCCGGCAAACAACAGAAAGTCCAGTCCTCTGGCTTCACCAAGGAAGAGGAGC	69	-	chr2L	9918023	9918092	9918023..9918092	CG5885-RA,	FBgn0025700,	CG5885,	1	.
CG7777-RA	CGCAGGACGAATTAGCTTGATCAGAGCCTTTTTCTATGTGGTTTTCCAGTGCTTGGGTGCAATTGCCGG	69	+	chr2R	7327750	7327819	7327750..7327819	CG7777-RB,CG7777-RA,CG7777-RC,	FBgn0033635,	CG7777,	1	.
CG8837-RA	GTTCACCATGACGTTCCCCTTCGTCCAAGAGAGCCCCCACTACTATCTGCGCAAGAACAACATGG	65	+	chr2L	3321776	3321841	3321776..3321841	CG8837-RA,	FBgn0031520,	CG8837,	1	.
CG15675-RA	GCCGGCTGTCTTGGAAGCACCCAAAGTGAATCCGCACACATTTCCAGCGATATTAAGCAGGATTCTACT	69	+	chr2R	17554513	17554582	17554513..17554582	CG42365-RA,	FBgn0259711,	CG42365,	1	.
CG17592-RA	TCCCCATTTTGGAGCGGTTCTTTTTCGCCACTATCTCGTGCAATATGAGCTGGACTCTCGAATGTCCCT	69	-	chrX	4441032	4441101	4441032..4441101				0	no match
CG6867-RA	GCCCGTTTTCCACAAGGTGGTCAATGAAAAGTTCGGCTCCTGGCTTAGAGATCCATCTCCGGACAGTGA	69	+	chrX	17921200	17921269	17921200..17921269	CG6867-RA,	FBgn0030887,	CG6867,	1	.
CG13907-RA	AGCCTAGGCAACAGCGGAGGATGAAGTGCGGAAAATTCACTTTTCTACCAGGAGAACTCAGCTTAGCTT	69	-	chr3L	878166	878235	878166..878235	CG13907-RA,	FBgn0035173,	CG13907,	1	.
CG4579-RA	ACGGCTAAAGCGTCCGATGCAAAAAACGGTGCTACGCAAACGATTCCAAAAATAGTGGCCCATACCCTA	69	+	chr2L	11008422	11008491	11008422..11008491	CG4579-RB,CG4579-RA,	FBgn0021761,	Nup154,	1	.
CG1637-RA	TGCACTTCATCGGTTTTAGCACAGAAGTCTATTATTTCACTAAGTTCGGGATCAAGCAGATCGTG	65	-	chrX	10766943	10767008	10766943..10767008	CG1637-RA,	FBgn0030245,	CG1637,	1	.
CG3123-RA	CGCGTCGCCTTGAACACCTATCCCAACTTGATCCCTCTGGTAAGCGGACTTAGTGTTTCGGAGATGGAG	69	-	chr2L	2824745	2824814	2824745..2824814	CG3123-RA,	FBgn0031465,	CG3123,	1	.
CG6302-RA	AGGCGGAGAACCGTAATGTCCTGGTGTTCAACTGAGAGCGATTGATTACCTCACCACACCGTATTTATT	69	-	chr3L	11066776	11066845	11066776..11066845	CG6302-RA,	FBgn0010741,	l(3)01239,	1	.
CG1397-RA	TTCTTGCTCTGCTTAAGATTTTATTGCCGTTTACTCGTGCATTTTTTCGTATCATTTTTCCGATCGCAA	69	-	chrX	11046802	11046871	11046802..11046871	CG1397-RA,CG1908-RB	FBgn0261277,FBgn0030274	rtv,CG1908	2	.
CG8567-RA	GCGTGGTGGACGAGAACAACATGTTCCTGTCGGAAGAGAACATCACGTCCAAGGATGAGCCGTGG	65	+	chr3L	19821620	19821685	19821620..19821685	CG8567-RA,CG8567-RB,	FBgn0013799,	Deaf1,	1	.
CG8719-RA	ACCTGAATGATGGAATCTTCGGAGCGTTCGCAGGAATGTTTTACTACCCTGAAGAGGTGGCTCCCG	66	+	chr2R	3896030	3896096	3896030..3896096	CG8719-RA,	FBgn0013308,	Odc2,	1	.
CG1712-RA	CCATTGTATCCGGTGTTTACTGTGGCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGACTAA	69	-	chr2R	3279881	3279950	3279881..3279950	CG1712-RA,CG1712-RB,	FBgn0041243,	Gr43a,	1	.
CG7171-RA	TGGACAAGCCACATGGCACCATCTATGCCCAATTGGCCCGGAAGAACATCAATAGTCACCTGTAGATCG	69	+	chr2L	7781180	7781249	7781180..7781249	CG7171-RA,	FBgn0003961,	Uro,	1	.
CG10334-RA	CCTTCGATGCCTGGTACTGTTTGAACGATGCCCATTGCTTTGCGGTGAAGATAGCCGATCTACCGGTTT	69	-	chr2L	19568675	19568744	19568675..19568744	CG10334-RE,CG10334-RB,CG10334-RA,CG10334-RG,CG10334-RF,	FBgn0005672,	spi,	1	.
CG11202-RA	GACGCATGTTTCCCACGTTTCAGGTGAGGATCGGTGGTTTGGATCCACATGCCACCTACATTTGCATG	68	-	chrX	8345665	8345733	8345665..8345733	CG11202-RA,	FBgn0021767,	org-1,	1	.
CG3709-RA	CCGCCAAGGTGCATCGTGGAAATCCAAAAGCCTTGATCATCGATATTGTCACTCAAGCGGGGACTTACA	69	-	chr2L	153825	153894	153825..153894	CG3709-RA,	FBgn0031227,	CG3709,	1	.
CG4581-RA	GTGGCGAATCCACAACCGAAGCAGAAGAACAGCCAGAATATCGTGCTCGTGGATGGAGTCCGCAC	65	-	chr2R	19755644	19755709	19755644..19755709	CG4581-RA,	FBgn0025352,	Thiolase,	1	.
CG32516-RA	TCAGTCATTTCGATTTTCCCTTTGCAGACGACAAAAATGCCCGAGTGATCAAGCCAACACAGCGA	65	+	chrX	21003369	21003434	21003369..21003434	CG34120-RB,	FBgn0083956,	CG34120,	1	.
CG11163-RB	TGTTAATAGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCAGAGGAGCAAACCTGGGAAG	68	-	chr2R	1665746	1665814	1665746..1665814	CG11163-RA,CG11163-RB,CG11163-RC,CG11163-RD,	FBgn0025693,	CG11163,	1	.
CG7823-RA	AGCATTTTTCGCCTAAGTCCTCCTCAATGAGAGTCAAGTCAAAACCAAGTCAAGTCACTAGGCCAGTCA	69	+	chr3L	19925547	19925616	19925547..19925616	CG7823-RA,	FBgn0036921,	RhoGDI,	1	.
CG4701-RA	TGGGAGCACTTGGAAATTCAAATGGAAGACCTTCTCAAGTCGCTGTCCGTCATGAAGGCGTCGAAACAT	69	+	chr2L	14767047	14767116	14767047..14767116	CG4701-RA,	FBgn0028868,	CG4701,	1	.
CG4898-RB	AGTAGCCTGCACTTTTGATTTGTGTGTTCGTAGATGGATAGTTTGTAGATTGATTTTGATCGCGGACCA	69	+	chr3R	11133529	11133598	11133529..11133598	CG4898-RJ,CG4898-RE,CG4898-RG,CG4898-RM,CG4898-RN,CG4898-RO,	FBgn0003721,	Tm1,	1	.
CG32491-RV	AGAGCCGAACAGTTTTGATGAATTTAAAAAGGCTAAGCACAACCACTAGCCAATAAATACAATTTTTAT	69	+	chr3R	17194702	17194771	17194702..17194771	CG42776-RA,CG32491-RV,	FBgn0261844,FBgn0002781,	pre-mod(mdg4)-V,mod(mdg4),	2	.
CG9446-RA	TGCGCACCATACAAGACGAGATCCGCAAACTTAAGGCGATCATCGTCAAGCAAGAGAACCGCATCCG	67	-	chr2R	2750717	2750784	2750717..2750784	CG9446-RA,CG9446-RB,CG9446-RC,	FBgn0033109,	coro,	1	.
CG9094-RA	GGTGACCAAACGTACACATAAGGGGTAAAATGGGTACTGGGGAGGGGAAAGAGTATGGGGATGGGGC	67	+	chr3L	1104257	1104324	1104257..1104324				0	no match
CG1515-RA	AGCACGCTATCAAAATCCCGTCGAAGCAGATCCGCTGACGAAAATGCAAAACGACCTGGACGAAACGAA	69	+	chrX	7815180	7815249	7815180..7815249	CG1515-RA,	FBgn0260858,	Ykt6,	1	.
CG17763-RA	AGGCGCACTTTAACGAAATGACCGACTGCTTGCATAAGCTTTTGACTCCAGTGACGCCCAGTAGCATGA	69	-	chrX	5509973	5510042	5509973..5510042	CG34434-RB,	FBgn0250904,	CG34434,	1	.
CG8193-RA	CAACTCTTAGCAATCTATTGCATCTTTATTGAGCCGCTTAATAAACAAGACATCATGGCATTCCA	65	-	chr2R	4929764	4929829	4929764..4929829	CG8193-RA,	FBgn0033367,	CG8193,	1	.
CG2658-RB	CGACGGGAGCTCAAAACGATCTGGAAAAGGTGACGAAGATCGCGTACTCGCAGATCAAGAAGTTCGGCA	69	-	chrX	2589622	2589691	2589622..2589691	CG2658-RA,CG2658-RB,	FBgn0024992,	CG2658,	1	.
CG15653-RA	CGAACCGAACACTGGGCAATATTTGTGTCTACGGTGCGGTGGCCTCCATATCCGCTGTGATGTACATGA	69	-	chr2R	16947882	16947951	16947882..16947951	CG15653-RA,	FBgn0034578,	CG15653,	1	.
CG4618-RA	CTTAGTTTAAGATCGCACCAAATCCCAAAATGTTCAACAATATTTTCGGAAAGAAACCCACCGTGAAGG	69	+	chr3L	5132815	5132884	5132815..5132884	CG4618-RA,	FBgn0035589,	CHMP2B,	1	.
CG9138-RA	GTGCGATGGCTTCTGCGAGAACTCTGGTGCGTGTGTCAAGGACTTGAAGGGCACACCATCTTGCC	65	-	chr2L	6974080	6974145	6974080..6974145	CG9138-RA,CG9138-RD,CG9138-RE,CG9138-RF,CG9138-RB,CG9138-RC,	FBgn0031879,	uif,	1	.
CG9010-RA	AGTGCTCCGGTAGGTTTACCACCCTGAAAGCCTGTCAAGGTCACTTGGATAGTGGGGCCAAAAAG	65	-	chr2R	12847252	12847317	12847252..12847317	CG9010-RA,	FBgn0034173,	CG9010,	1	.
CG4937-RA	CCCACCCATCAGTTGACCCTGTACGAGGTTATCCTGAACGACAGCTTAGAGCGTCCTCTTCACCATGAC	69	+	chrX	16848863	16848932	16848863..16848932	CG4937-RB,CG4937-RC,	FBgn0030808,	RhoGAP15B,	1	.
CG10105-RA	ATGGAAGACTTCCCACCGTTGGACAATCGCGAACCCTGCTCTAAGTTTGGCTTCTCCCAACTGAC	65	+	chr2R	10300275	10300340	10300275..10300340	CG10105-RA,	FBgn0033935,	Sin1,	1	.
CG8428-RB	GCTCAGTTGGGCGGACAAGTTCCCGATGTTCATGTTCCTATTGGAAGGGATCGGAGGAAGGAGGA	65	+	chr2R	12024922	12024987	12024922..12024987	CG8428-RE,CG8428-RD,CG8428-RC,CG8428-RB,CG8428-RA,	FBgn0086676,	spin,	1	.
CG4457-RA	TTTTTGTTAATTACACAGGAATTGCAATAAACCAACCAAGAATTCACTGAAAGAATGGCGACAGC	65	-	chr3L	7341010	7341075	7341010..7341075	CG4457-RA,	FBgn0015298,	Srp19,	1	.
CG33120-RA	CCGGCCACCACAATCGAAGACCTGCCTTTCCTTAAATCTTCATCGCTTTGGGGACAAATACAGACTGGC	69	-	chr2L	18841562	18841631	18841562..18841631	CG33120-RA,	FBgn0053120,	CG33120,	1	.
CG9101-RA	GACGCCTCATAAGATCGCGCAGCTTCACCACCGATATCCAACGAATGCCAACGGAGGCCATTTAC	65	-	chrX	15123356	15123513	15123356..15123375,15123467..15123513	CG9101-RA,	FBgn0030622,	CG9101,	1	.
CG10969-RA	TGCCAATGGTTTCAATCCGACGTCCCCAATTGCGGAAATATCGTGACCATATGCGATGAGGAACACCAA	69	-	chr3L	12773326	12773395	12773326..12773395	CG10969-RA,	FBgn0036310,	CG10969,	1	.
CG31150-RA	CGCTTCCCACGAGCTTACCTTCGACTCAGGACTTAAGCGCTCCTGCTCAGTAATCAATGGCATAGTCAA	69	-	chr3R	11670861	11670930	11670861..11670930	CG31150-RA,	FBgn0051150,	CG31150,	1	.
CG8346-RA	AGCGTGGCTGTCATATAAAAGTAGGGCTGGGAACTAGTTTGCCACTCATTTCGTAAAAGTGCCGCCACT	69	+	chr3R	21847506	21847575	21847506..21847575	CG8346-RA,	FBgn0002609,	HLHm3,	1	.
CG4976-RA	GCCGTTCGTATCCATGTGAAGCCTAAGAAGACTCCCAAGGTGAAACACATAAGTGCGGACGATGAGCCA	69	-	chr3R	23758925	23758994	23758925..23758994	CG4976-RA,	FBgn0039559,	Mes-4,	1	.
CG5800-RA	TCAGGATCGTCGCATTGCCATCTACGAGGATTTCCTTCGCAAGAGCCACGTCGTTATGTTCTCCACTGA	69	+	chrX	17531582	17531651	17531582..17531651	CG5800-RA,	FBgn0030855,	CG5800,	1	.
CG15113-RA	AAAGAAACCCAAGAGTAGTACGCTTAGATACCCTAGAAACCCTAAGTAGGTGGTATGAACAGTGATCGG	69	-	chr2R	14910650	14910719	14910650..14910719	CG15113-RC,CG15113-RA,	FBgn0263116,	5-HT1B,	1	.
CG32212-RA	CTTACTCTGCTCCTCTAGACTACTCTGCTCTCGCTGCCGTGGTAACTGCTCCCACTCCACCTGTG	65	+	chr3L	19481209	19481274	19481209..19481274	CG32212-RA,CR33940-RA	FBgn0052212,FBgn0062928	CG32212,pncr009:3L	2	.
CG1106-RD	ACGTTGCAAAGCCTGGTTCCGATGAGATCGTGGTCAGCACCGTTCCCTTCGATGAGAAACTTCCTCTTT	69	+	chr3R	65428	65497	65428..65497	CG1106-RB,CG1106-RD,CG1106-RA,CG1106-RH,CG1106-RF,	FBgn0010225,	Gel,	1	.
CG17660-RA	ACCAAGTTCGAGGTGTCGAAAATGCAATAAGCTGTGACTTTCGCTGGACCGAAGAGACTTTTTACGCAT	69	-	chr2L	1707732	1707801	1707732..1707801	CG17660-RA,	FBgn0031356,	CG17660,	1	.
CG17272-RA	GCCGACGATCCAAGAACTGGTTTCCTATCTGAAGCAAAAGAATGGGAAAATGAGCTTCGCCGACTTCCT	69	-	chr3R	16649366	16649435	16649366..16649435	CG17272-RA,	FBgn0038830,	CG17272,	1	.
CG4135-RA	CAAGCTGGAAAACGCGGAAATGCACAGTCACATGTTGCCATCAGCAGAGATTGCGACAACGGCAG	65	-	chr3R	13073103	13073168	13073103..13073168	CG4135-RA,CG4135-RB,	FBgn0038494,	beat-IIb,	1	.
CG33091-RA	GCCGGATCTGTGTCAGCGTTACCAGGCAAAGATCGATCGACTGGTGGAGAACGTAATGGAGTACGGAGA	69	+	chr3R	21098252	21098321	21098252..21098321	CG11891-RD,CG11891-RE,CG11889-RA,	FBgn0039309,FBgn0039308,	CG11891,CG11889,	2	.
CG8289-RA	AAGACAGCGATTGCCAGACCTCTACCTCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAG	65	-	chrX	17529728	17529793	17529728..17529793	CG8289-RA,	FBgn0030854,	CG8289,	1	.
CG17065-RA	ATTCTCCAAATAAATTGTTAAACTTATACATTCCAATTGAAGGAGCTTGAGATTCTTGTGAGTGCAGCC	69	-	chrX	20125786	20125855	20125786..20125855	CG17065-RA,CG17065-RB,	FBgn0031099,	CG17065,	1	.
CG6236-RA	TGTCGCGATTGATTTGTGCACAAAATGACAAGTCCAAAACATAGAAACTGCTAAGCAATCAACTGGAAT	69	-	chr3R	11151203	11151272	11151203..11151272	CG6236-RB,CG6236-RA,	FBgn0038318,	CG6236,	1	.
CG7875-RA	GGGCACTGCTAATGTTCGGCTCCTATTCGGTTATCAACATCATTGTGCTTCTCAACATGCTGATTGCCA	69	-	chr3R	25742867	25742936	25742867..25742936	CG7875-RA,	FBgn0003861,	trp,	1	.
CG12346-RA	TCGAGGCGATTCTGGTGAAAAGCGAACCCATCTCGAATAAGGACGATTGTGATGAGCCATACCCCGTGA	69	-	chr2R	6780897	6780966	6780897..6780966	CG12346-RA,	FBgn0017414,	cag,	1	.
CG12861-RA	GGATCCCATGCCCTGTGATGACGTGAAGAAAAAGCCCGAGATACTGATTGAAGTGCCGCGTATCGGG	67	-	chr2R	10552258	10552325	10552258..10552325	CG12861-RA,	FBgn0033953,	CG12861,	1	.
CG8409-RA	AGTGGCCAATGAAAAAATCCCACGAATGGTAATCCACTTCTACGAAGAGCGCCTATCCTGGTACTCTGA	69	-	chr2L	8209847	8209916	8209847..8209916	CG8409-RA,CG8409-RB,	FBgn0003607,	Su(var)205,Su(var)205,	1	.
CG32465-RB	GGCTTTGCGGCGTACTCCACAGCTTTGAGTGTGACCATCGCAATAGGATGTTCGCTTTTGATCCTGAAT	69	-	chr3R	3398667	3398736	3398667..3398736	CG34127-RB,	FBgn0083963,	CG34127,	1	.
CG31847-RA	GTCTAATCGAGTATATTTCCCGAGGCTTAACTCCTCTATTCTTCGCAAGCCACTTGATTTCCCTGCCCA	69	+	chr2L	13499472	13499541	13499472..13499541	CG42784-RE,CG42784-RB,CG42784-RC,	FBgn0261855,	CG42784,	1	.
CG10425-RA	GTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAGAAACCGAGGAGCATTGTGGGTCG	65	-	chr3R	21088015	21088080	21088015..21088080	CG10425-RA,	FBgn0039304,	CG10425,	1	.
CG4655-RB	ACTGAAGTTCCCACAGTTGACCTTTCTAATTGCCTCTAGATGTGACTGATGGGTCTCAGATAATTCTCT	69	+	chr3R	6667251	6667320	6667251..6667320				0	no match
CG11450-RA	GCCGATCAATCCGTACCGTCCATTGCCACGTGCTTAGAAGCTGTAACATCAACCATCCAAACGGAGGG	68	-	chr2L	83295	83363	83295..83363	CG11450-RB,	FBgn0002931,	net,	1	.
CG12299-RA	TGGAGCCACAACGACTCCAACTATTCCACGTCGCGTATTTCCCAGAATCGCCTGAAGAGATTACATTAA	69	+	chr2L	10740678	10740747	10740678..10740747	CG12299-RA,	FBgn0032295,	CG12299,	1	.
CG7910-RA	GCGTTTGCTGATGGTGGAACTCTTCAACAGCATCATAGGTCACTCAATCTTCACCAAAGAGGCCATGGT	69	+	chr3R	3914652	3914721	3914652..3914721	CG7910-RA,	FBgn0037547,	CG7910,	1	.
CG2316-RB	GCAGGGGAGTTGCACATACCAAGGCCTGTGAAAGACGTTCCATGTATGTTTTACATTCCCCAACGTCCA	69	-	chr4	206737	206806	206737..206806	CG2316-RB,CG2316-RG,CG2316-RA,CG2316-RE,CG2316-RF,CG2316-RD,CG2316-RC,CG2316-RH,	FBgn0039890,	CG2316,	1	.
CG8909-RB	GCCTGTCCGGATGTGATGGATCCCAAGGATGTGGCATGCTCCATTAAGCCAAAAGTTTTGGTGCAC	66	+	chrX	15813150	15813216	15813150..15813216	CG8909-RB,CG8909-RC,	FBgn0030706,	CG8909,	1	.
CG12255-RA	TGCTCGCCGAGAAGAAAGTTCTGGTGATACCGAATCCAACTCCCATCGCTGTTCGTTCACAGCCGATAT	69	+	chr3L	16358586	16358655	16358586..16358655	CG12255-RA,	FBgn0036618,	Cpr72Eb,	1	.
CG15595-RA	CGCTTTGGTCACATCCGGTATTTTGGCTCTGAAATGGATTTTGTCTGGAGGACATGCACACGATCGCCT	69	+	chr3R	2118277	2118346	2118277..2118346	CG15595-RA,	FBgn0037422,	Osi13,	1	.
CG7865-RB	GGCCGCACTCTGATTCCTGTGGAAGAGCTCACCGAAATGGCAAGCGAGAAACTGATAGACATCCAAGAT	69	+	chr2R	1906006	1906075	1906006..1906075	CG7865-RB,CG7865-RA,	FBgn0033050,	Pngl,	1	.
CG18471-RA	TCATATCCCCACGGCTATGGCTATCCACCGGAACCTCAGAGAAGTCCATACGGTGATCCCAGTCG	65	+	chr2R	12535756	12535821	12535756..12535821	CG18471-RA,	FBgn0024232,	gprs,	1	.
CG17169-RA	AGCCGGGCCTTTTAAGGAACTGCAAGACGAGAGATCAAATGCGACCTCTGATTAATAAAGTCAAGCAGT	69	+	chrXHet	64278	64347	64278..64347	CG17169-RB,	FBgn0040514,	CG17169,	1	.
CG31760-RA	GCACCCCAATCGTCGTCTGATGGCTTCCATCTCCAATCCCGTTCTGCTTAACTTGTGATTATGTTTACA	69	+	chr2L	12169361	12169430	12169361..12169430	CG31760-RA,CG31760-RB,	FBgn0051760,	CG31760,	1	.
CG3812-RB	GCCGGAAGTCCCATACAGGATAGCAAATCGGGCGAAGATAGCAGAAGGCATCTGGATCCAGGATCTGAA	69	+	chrX	12661095	12661164	12661095..12661164	CG3812-RA,CG3812-RB,	FBgn0030421,	CG3812,	1	.
CG3757-RA	TGGGCATCGGCAATACCACCACTAATCCGTGCCCCTATGCGGTAAATGTCTTTGACTTGACCACGGATA	69	+	chrX	253829	253898	253829..253898	CG3757-RA,	FBgn0004034,	y,	1	.
CG13933-RA	GCAGTTCGTTTCGCACCAACTCGTGCTACCTGCTTTTCTACTACATCATCCTGATCACGAAGAAGGAGT	69	-	chr3L	1772906	1772975	1772906..1772975	CG13933-RA,	FBgn0035270,	CG13933,	1	.
CG14809-RA	CATCCTTTGTCAGAGCGACAACAATGACATTGCGAGTGCGAGCCGATGGACTCATCCGATGGAGC	65	-	chrX	1651067	1651132	1651067..1651132				0	no match
CG2712-RA	AATGTGGAGACCTGAAGCTAGATCGCTTATACTATCGGCTTAATGTACAAATCGGGACATTTAGTTTTA	69	+	chrX	2628218	2628287	2628218..2628287	CG2712-RA,	FBgn0024975,	CG2712,	1	.
CG8981-RA	AGAAACCAAAGGGCAAATCACGTACACGGATTCGCACGCTAGTCCACACCAACATGCACCAGGAG	65	-	chr2R	7784634	7784699	7784634..7784699	CG42572-RA,CG42572-RB,CG42572-RC,CG42572-RD,	FBgn0260959,	MCPH1,	1	.
CG18278-RA	CTCAACAAAAGGCGAAGGGTTCCATTTTTCGAGCGTTCCCTGTTGATCGAGTACTGGGGCGAGGG	65	.	.	.	.	.	CG18278-RA,CG30059-RA,	FBgn0033836,FBgn0260475,	CG18278,CG30059,	2	.
CG10344-RB	TGCCTTCCATGAACCGGGTGGCTTCTTCCACACCTTCACCTTTCTTATGGCCATGTTCCTGGTGTTTAA	69	-	chr2R	18314236	18314305	18314236..18314305	CG10344-RA,CG10344-RB,	FBgn0034729,	CG10344,	1	.
CG15172-RA	AGTGGTCGAGTAAATGAAAGTAAAACGTAGCCACTAATTGTTCGACAATAAAAAAGAGTAAATTCAGCA	69	+	chr2L	19023576	19023645	19023576..19023645	CG15172-RA,	FBgn0032740,	CG15172,	1	.
CG13409-RA	GCCATTCTGCAAGCGACGTTCCTTTGTGCTCTACTCATGTTTTGGCTGTGCATCTACCATGGACTGCGA	69	-	chr3R	17856180	17856249	17856180..17856249	CG13409-RA,CG13409-RB,	FBgn0038926,	CG13409,	1	.
CG7745-RA	TGGGAGAATTAGTCACCACGGAACTGCTGAAAATGAACAAGGAACGGAAGAAAAGTGCACAGAAACGGA	69	+	chr2R	7196932	7197001	7196932..7197001	CG7745-RA,	FBgn0033616,	CG7745,	1	.
CG1693-RA	GAATCCTGCTTTTCGACTCTTGTACATATTATATACCGAACTATACCCGAACTTTCCGAGCAAGTCGAC	69	-	chrX	21202664	21202733	21202664..21202733	CG1693-RA,	FBgn0015558,	tty,	1	.
CG4267-RA	TCGGACGCACTACACTCGATCGGTCAGAAGCCCCGAGGGAGATATCTTGGAACAGCCATGATCTC	65	+	chr2L	2242464	2242529	2242464..2242529	CG4267-RA,	FBgn0031405,	CG4267,	1	.
CG15258-RA	ACTCGGCGGAAATCAGTTTCAACTTTTGGCAGGAGTTCGAACACATCCGGTCGATCCAGCAAAATCGCA	69	-	chr2L	15361440	15361509	15361440..15361509	CG15258-RA,	FBgn0032563,	CG15258,	1	.
CG17026-RA	TGGCGCGCTACCCGGATCACAAATTCATTGGGGAAGAGGATACCCACAAGAATGACAATGTAACGAAAG	69	+	chr3L	15968747	15968816	15968747..15968816	CG17026-RA,	FBgn0036550,	CG17026,	1	.
CG8524-RA	TCGATCAGCCGCTAAATCTGTGTGTGGTCAAAAAGTCTCGCGACAGCAACAACTCACCCATGCCG	65	-	chr3R	10169992	10170057	10169992..10170057	CG8524-RA,CG8524-RB,CG8524-RC,	FBgn0024321,	NK7.1,	1	.
CG4286-RA	GAAGGGTAAACGTGACAGTGACAGTGGGCCACATGGTAGTGGTTTGGGATCCAATGTGCCCGAAC	65	-	chr2R	17065801	17065866	17065801..17065866	CG4286-RA,	FBgn0034601,	CG4286,	1	.
CG3827-RA	GGCACCTACGAAGGAGTTCCCCAACAAATATCCACCCACCTGGATCGTCTGGATCATCTGGACAACGAA	69	+	chrX	291052	291121	291052..291121	CG3827-RA,	FBgn0004170,	sc,	1	.
CG31286-RC	AGATCGCCATGGAGTCCCAAAATTGACATTGGACAACGTGCTCAGTAAGGGATGCCAAAGTTATGCTTG	69	+	chr3R	2467217	2467286	2467217..2467286	CG31286-RB,	FBgn0051286,	CG31286,	1	.
CG12945-RA	GGTCGGACCTGGTTAACGATATCAATCAGCCCGGTGAATTGTGCCAGTGTCCTACGTGTCCAGATGTGT	69	-	chr3R	5616643	5616712	5616643..5616712	CG12945-RB,	FBgn0037755,	CG12945,	1	.
CG5855-RB	CCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTTTGTACCGGAACATGCGTGAGGGTTGGA	69	-	chr2L	16310045	16310114	16310045..16310114	CG5855-RA,CG5855-RB,	FBgn0000339,	cni,	1	.
CG2811-RA	AGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTATGATCGCGAGCAACAAACCA	69	-	chr2R	20827613	20827682	20827613..20827682	CG2811-RA,	FBgn0035082,	CG2811,	1	.
CG1019-RA	TCCATGTCTGTGAACCGTTCCGATGCATCTGTCTAATGACCAATCTGTTTTAACTAACTATCCCTGAAA	69	-	chr3R	2939887	2939956	2939887..2939956	CG1019-RA,CG1019-RB,	FBgn0014863,	Mlp84B,	1	.
CG18531-RA	GTGGGCAACGACTTCCTGGCTATCACCTCCAACTGCTACTGGATGTTCCTCAACTTCCGCCAGTC	65	+	chrX	1347542	1347607	1347542..1347607	CG18531-RB,CG18531-RC,	FBgn0027796,	Gr2a,	1	.
CG33071-RB	TTCCATTGAGTCGGTCCCACTGGAGGACCAACGTTTGGACAGTGAAAAGACCCTGTTTGACCACGTGAA	69	-	chrX	21189445	21189514	21189445..21189514	CG33713-RA,CG33713-RB,CG33714-RA,CG33714-RB,	FBgn0064116,FBgn0064117,	CG33713,CG33714,	2	.
CG2621-RC	CGAGCTAAGATCTAACTAACTAAGAGTTTGCGTAGGTTAAACAAGGCATGGTCTTGCAACAACGTGCAG	69	+	chrX	2569341	2569410	2569341..2569410	CG2621-RD,CG2621-RH,CG2621-RI,CG2621-RG,CG2621-RK,CG2621-RB,CG2621-RE,CG2621-RF,CG2621-RC,CG2621-RN,	FBgn0003371,	sgg,	1	.
CG13897-RA	TCAAGATTGAAGCCGAGCATATGCCCATGTTGTCGACCTTTAAGAGCGAGCAAGTCTCAGCTGCGGA	67	-	chr3L	738467	738534	738467..738534	CG13897-RA,	FBgn0035160,	CG13897,	1	.
CG32454-RA	TCGCCCGAGCTATGGCACTTCTACGACCCATCGAGTCCTGTCAGTTGTATAGTGCAAGAGGTGGCTAAT	69	+	chr3L	22723541	22723610	22723541..22723610	CG32454-RA,	FBgn0260481,	CG32454,	1	.
CG12932-RA	CCACCATCTGCCATACTCGAAACTAGACTTAGATTACCCGAAACTGCCGCAAGAGCATAAGCGACAAGT	69	+	chr2R	5411731	5411800	5411731..5411800	CG42344-RF,	FBgn0259246,	brp,	1	.
CG6357-RA	ACGCTGACTCATCGACACCCACAATTGAACACACCTCTGGCTTATCTGAGTTCGAGGAGGAATGCCAGT	69	+	chr2R	9727721	9727790	9727721..9727790	CG6357-RA,	FBgn0033875,	CG6357,	1	.
CG6758-RA	CGCGGATAGCACTTTGTTGCTGGTAACCCCACTTCCCAAATCCTTCAAAGTTCGGCGTAAGAGGTTCAT	69	+	chr2R	18064794	18064863	18064794..18064863	CG6758-RA,	FBgn0034704,	CG6758,	1	.
CG16970-RA	TGTGCCACTGTCTATGCGTTCATCGTCACCATGTGCTATTGGCTACTGGTCCACAATCCCGGTAAGTGA	69	-	chr2L	13307926	13307995	13307926..13307995	CG16970-RA,CG16970-RB,	FBgn0032504,	CG16970,	1	.
CG41129-RA	CAAGGATTTTTGCGGGCATGGATCATGGCACCAGCAGTTGACAGCCTTTGTAAGCAATCGTGGCG	65	+	chr3LHet	1091365	1091772	1091365..1091393,1091735..1091772				0	no match
CG32495-RB	GATTCACCCAGGCATATAGCATCGGTCTGTTGCGATCCGACTATATGGCACACGTGTCCGAGGGC	65	.	.	.	.	.	CG6835-RE,CG6835-RJ,CG32495-RB,CG32495-RG,	FBgn0030882,FBgn0052495,	GS,CG32495,	2	.
CG14061-RA	GGGGATGACGTAAAGATGGCCTACTATGGTCCACCCAAGTTCCAGATCAGACTGTACAACACGCGGGTT	69	-	chr3R	24583341	24583410	24583341..24583410	CG14061-RA,	FBgn0039598,	CG14061,	1	.
CG13391-RA	GGCCATTGCCAAGGGTATCCGAAGAATTGTGGCTCTTACAGGACCCGAAGCTCTGAAGGCACTGAAG	67	-	chr2L	8379024	8379091	8379024..8379091	CG13391-RB,CG13391-RA,	FBgn0027094,	Aats-ala,	1	.
CG12210-RA	CCTCCTAGGGAGTGAGGTAAACACATGGATACGAAATGGAAAAGGACCAAACAAACACAACTGGGACGG	69	-	chr2R	6137183	6137252	6137183..6137252	CG12210-RA,CG12210-RB,CG12210-RC,CG12210-RD,	FBgn0003660,	Syb,	1	.
CG2478-RA	TGCGGTGTCCTTTAATCTAGAACTTTTGCCTAGCGTACAGATTACAAGCTGGGATGTGCTTCCCGCAGA	69	-	chr2L	20652403	20652472	20652403..20652472	CG2478-RA,	FBgn0261787,	bru,	1	.
CG8214-RA	AGCCACCCTGCATCGATACAACGACCAATTCGCCAAGGAGAATGACCAACTACGCAAGGACAGCG	65	-	chr2R	11576109	11576174	11576109..11576174	CG8214-RA,	FBgn0034037,	CG8214,	1	.
CG12178-RA	GCAATCGACTCTGAACACTTGTCTGAACTCACCGAGGAAGAGGACGTCACCTTTACTCAAGCGCGCGA	68	-	chr2L	104683	104751	104683..104751	CG12178-RB,	FBgn0026787,	Nhe1,	1	.
CG10583-RA	CGTCTAGACCACCTCCATTGGGAACAACTAGTCACCGTGCAGGAATTCTCCCGCGTCAAATCACTGCA	68	-	chr3L	5653827	5653895	5653827..5653895	CG10583-RA,	FBgn0035627,	Sse,	1	.
CG7675-RB	ACGCACAATTTACTGATTTACTTTTCTTGTTTTTAAGGGGGAGTTTACTGTAGCCTAAGTTTTCTCAAT	69	-	chr3R	14203865	14203934	14203865..14203934	CG7675-RA,CG7675-RB,CG7675-RC,	FBgn0038610,	CG7675,	1	.
CG10248-RA	CGTGCTCGAAGACGCCCAATCCTTTGGTCTACGATCCCAAATCATTCGTACTTGGTGTGAAAGACGGAA	69	-	chr2R	10774931	10775000	10774931..10775000	CG10248-RA,	FBgn0013772,	Cyp6a8,	1	.
CG13277-RA	GGAGTCGAGAGCATCGCCAATCCGTTTATAACGCAATAGTCCAAGGTTTTGTGGCTGGGATGCGTTCCA	69	-	chr2L	16742638	16742707	16742638..16742707	CG13277-RA,	FBgn0261068,	LSm7,	1	.
CG8291-RB	ACGTATTGGTCCAGGAAGATGGGCAGTCTTATCCAAATTGGAGTGCTGTTAGTCATTCCCGTGACTGCT	69	-	chr2R	11811634	11811703	11811634..11811703	CG8291-RA,CG8291-RB,CG8291-RC,	FBgn0034049,	bdg,	1	.
CG12287-RA	CGCCAAACTCGATGACTGCCAATTCTCTGGGAATGAGTAGTGCCGTGATGACTCCAAATACGCCCAGC	68	+	chr2L	12685022	12685090	12685022..12685090	CG12287-RB,CG12287-RA,	FBgn0004394,	pdm2,	1	.
CG7272-RA	CCTCCCGTTCCCACATAACCCGTTTGAAAGGCATCAACTGAGAGTCATTGAAATCATGGAGGCACTGGG	69	+	chr3L	15494135	15494204	15494135..15494204	CG7272-RA,	FBgn0036501,	CG7272,	1	.
CG3241-RA	TCGGATGACTTGTAAGCAAGACGACTCATCCCTATATGTTTGTTTTTTTATGTGCTCAGTGATGTCCAG	69	-	chr2L	3463211	3463280	3463211..3463280	CG3241-RB,CG3241-RA,	FBgn0005616,	msl-2,	1	.
CG14656-RA	GTTGTTGACTACAGCATTATGCCGCACCTCACAACGGTCGCAACAACCACACCACATGCCTTGAC	65	-	chr3R	623133	623198	623133..623198	CG42574-RB,CG42574-RD,CG42574-RF,CG42574-RG,CG17735-RB,	FBgn0260794,	CG42574,	1	.
CG9978-RA	GAAACCCGTACAACTTGACCGTTGACATGACTCCCTTCATTAAGATCAACGAAAGCTACTATGTTTT	67	+	chr2L	19418470	19418537	19418470..19418537	CG33532-RA,CG33532-RB,	FBgn0053532,	lectin-37Da,	1	.
CG1288-RA	GCGCAGCAGATCCCATTAGATGCCGTTCAAACTTATCGCCCTGCCATAGAACCTATATCGCTGCGCTCT	69	-	chr3R	3033552	3033621	3033552..3033621	CG1288-RA,	FBgn0250845,	CG1288,	1	.
CG12877-RA	AGGCTGCACCTATGCCAACTACCACGTCAGCGACTATTACGATCCGGAAAAGCTCACCTGTTTCGTGAA	69	+	chr3R	23535689	23535758	23535689..23535758	CG12877-RC,CG12877-RE,	FBgn0039544,	CG12877,	1	.
CG2342-RA	GCTTCGCCTCTTATCTCGTACGCCTATTGAAATGCTCAGGAATAGGCCACCACGACCCGATAATTGCCG	69	+	chr3R	2513256	2513325	2513256..2513325	CG2342-RA,	FBgn0004777,	Ccp84Ag,	1	.
CG8303-RA	TGCGATTGGTCGGAGTTCATCGATCGGTGTCTGATAGGAATCCGGCGTTTCTACTTCAAGGAGTCGGCA	69	-	chr2R	12483162	12483231	12483162..12483231	CG8303-RB,	FBgn0034143,	CG8303,	1	.
CG13995-RA	AGCCACCCAAAGGATCGGACTCTGGATCGGGTTTCATTTCACTCCATTCAGTGGCGACCGTTTCCTAAT	69	+	chr2L	6059865	6059934	6059865..6059934	CG13995-RA,	FBgn0031770,	CG13995,	1	.
CG5029-RA	TGGACTCAATTTTTCCCAACGGAAGATCCTATTGTCTGGGCTCCATGAACCTGGAGTGTTGGTACCTCT	69	+	chr2L	10340572	10340641	10340572..10340641	CG5029-RA,CG5029-RB,	FBgn0019932,	SamDC,	1	.
CG4625-RA	GTCCAGTTCGCTATGAAGCAAATGAAATTCACGAAACCGCCAAAAACATACACTTGCAAAAAAGTGGAT	69	-	chr3R	21311746	21311815	21311746..21311815	CG4625-RA,	FBgn0040212,	Dhap-at,	1	.
CG10262-RA	GATGCGGTCACCATTAAGGCCGTTGACAGACCGGAGAAGATTACGCTCAGCTTCGAGTCGGATGG	65	-	chr2L	19583473	19583538	19583473..19583538	CG10262-RA,CG10262-RB,	FBgn0032813,	CG10262,	1	.
CG5848-RB	CTAGACACACACGTTCTCAAAATGCATCCAGGAAATGGAACCTTATGTACTTACTGTCCCGGCACGTGG	69	-	chr2L	16313169	16313238	16313169..16313238	CG5848-RA,CG5848-RB,CG5848-RD,	FBgn0000250,	cact,	1	.
CG5809-RA	ACGAATCGAAACCAACGATCATATAAACTATGTACCACAAAATGAATAAACTGTGCAACAAAACGTGTA	69	-	chr2L	16354942	16355011	16354942..16355011	CG5809-RA,	FBgn0025678,	CaBP1,	1	.
CG15220-RA	TCTGCTGAAATTGGCTGTTTTTTGAACGTTATTAACTGAGGAGTTATTATGGATGCCTTTGATCCACGC	69	-	chrX	11509766	11509835	11509766..11509835	CG15220-RA,	FBgn0030322,	CG15220,	1	.
CG14793-RA	AACTAAAAGCTTTCGAAAGTTAGGGACGAGATAGCGAAAGAGAAATTGAACCCAAAGCGCCTCAC	65	-	chrX	1380374	1380439	1380374..1380439	CG33513-RA,CG33513-RB,CG33513-RC,CG33513-RD,CG33513-RE,	FBgn0053513,	Nmdar2,	1	.
CG6293-RA	TGGATGCAGAAGAACCCTGGAGCTATTGACACCGGAAACAAGACCGTGGACTCAACGTTATCGGTGCTA	69	-	chr3R	6134530	6134599	6134530..6134599	CG6293-RA,	FBgn0037807,	CG6293,	1	.
CG11025-RA	AGCTGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCAATCGCCGAAATCAGCA	69	+	chr2R	15559472	15559541	15559472..15559541	CG11025-RA,CG11025-RB,	FBgn0028372,	isopeptidase-T-3,	1	.
CG7920-RA	GCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCCGAATCTGTTCTACAAGCAGATC	69	-	chr3R	25837508	25837577	25837508..25837577	CG7920-RA,	FBgn0039737,	CG7920,	1	.
CG15721-RA	TGCAGTCTCCGATCCAGAAACCATTCAAAATACAACGTTTGCAACGACACCTTTCCCGGAAACCACTAA	69	+	chrX	12867597	12867666	12867597..12867666	CG15721-RB,	FBgn0030438,	CG15721,	1	.
CG7161-RA	CAAGTGCTGCAAAAAGGTCACTGTCCCTTTTGTCACACATCCTCCGAAAAGCTGATGGAAGACTTTTGA	69	-	chr3L	8400470	8400539	8400470..8400539	CG7161-RA,	FBgn0035891,	Oseg1,	1	.
CG10281-RA	ACCGTTTGGTCGAGACCATGACGAAAATCCTGAAGAAGATCAATCCCGTCAAGCACACCATCCAGGGGA	69	+	chr3R	2208159	2208228	2208159..2208228	CG10281-RA,	FBgn0010282,	TfIIFalpha,	1	.
CG17052-RA	ACACAGATTCGCGTCTTAGTCACTTAAATTTAGTAGTTCTAGCCCATTTCCTATAGAGCGTATGTGTAG	69	+	chrX	20113347	20113416	20113347..20113416	CG17052-RA,CG17052-RB,	FBgn0031097,	obst-A,	1	.
CG31795-RB	ACTTTGATTTGGCGTGAGCACTTGGAAGGTTCGAAAAAGGCTTCACGAGATTGTCAGTAGGAGGACATT	69	-	chr2L	1013769	1013838	1013769..1013838	CG31795-RC,CG31795-RD,	FBgn0031294,	IA-2,	1	.
CG5945-RA	GGTGTCCGTCAAACTCAATGGCGACAAGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACAT	69	+	chr2L	13240564	13240633	13240564..13240633	CG5945-RA,	FBgn0032494,	CG5945,	1	.
CG15929-RA	AGAAGGCTTCAGCGTCCAGCAGTAGTACGTTATTGGCCGAAAAGGATGTCCCGGAGGTCAAGGAG	65	-	chrX	5648724	5648789	5648724..5648789	CG15929-RA,	FBgn0029800,	lin-52,	1	.
CG16926-RA	CGCCCAACAAGTACAACGACAAGCTGATGAACTCCATCTGGGGATTGTACAATCGCTATTCCCCCCACA	69	-	chr2R	15388063	15388132	15388063..15388132	CG16926-RA,	FBgn0040732,	CG16926,	1	.
CG4901-RA	TCGAGCGTTCTGCACGGAAAGTACAAGCCGAGCTACATACTCTTCACCGAAATTGTGCAGACGGAGCAA	69	+	chr2L	10213544	10213613	10213544..10213613	CG4901-RA,	FBgn0032194,	CG4901,	1	.
CG3860-RA	GCCGAGTCCTACGTCCAGTTTTTGAAGCAGGGAACCAGGAAGAACGATGACTACGATGGCTCTCCGAAC	69	-	chr2R	19880712	19880781	19880712..19880781	CG3860-RA,	FBgn0034951,	CG3860,	1	.
CG33142-RA	AGTGGGGCCGATTAGTAAACCGAATCCCCATGATTCTCAAAAGGAGGCAACCTCGTTTCTGGAGCGACA	69	-	chr2R	12884100	12884169	12884100..12884169	CG30461-RC,CG30461-RD,CG30461-RE,CG9002-RA,	FBgn0050461,FBgn0050462,	CG30461,ste24c,	2	.
CG11943-RB	AGCAGCAGACCAACCCCACCGATGACTCGAAGAGGCTACGTGTCAAGTATTTTCTGGATATAGCAGCCA	69	+	chrX	19752452	19752521	19752452..19752521	CG11943-RA,CG11943-RB,	FBgn0031078,	CG11943,	1	.
CG11777-RA	TCCGAAACATCAAGGGATTTATTGTCCAAACTGGAGATCCTACGAACACCGGAAAGAATGGACAGTCCA	69	+	chr2R	6356329	6356398	6356329..6356398	CG11777-RA,	FBgn0033527,	CG11777,	1	.
CG15284-RA	CGACGTCATCGTCAACAAATGCGAAGGATTGTGCAACAGTCAGGTGCAACCATCGGTGATAACGCCC	67	-	chr2L	14417078	14417145	14417078..14417145	CG15284-RA,	FBgn0032546,	pburs,	1	.
CG11570-RA	CCTTCGCTGTGAGCAAAACCTCCAGTGGAGTTCAGTATACCAGAGATGCGTTGTCCCACAGTATGGCGA	69	-	chr3L	11950265	11950334	11950265..11950334	CG11570-RA,CG11570-RB,	FBgn0036230,	CG11570,	1	.
CG7182-RA	GACTATTTATTGTTGCTAGCCTAATGATTACAATACAAAAACTTAATAAAGATAAATACGCAAGCG	66	-	chr3L	8337522	8337588	8337522..8337588	CG7182-RA,	FBgn0035878,	CG7182,	1	.
CG11900-RA	AGGATCCTCAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTCCGTGGAGGCCT	69	-	chr3R	25027969	25028038	25027969..25028038	CG11900-RA,	FBgn0039650,	Mesh1,	1	.
CG3884-RA	CAGCTTGACACCCGGTGTAATTGAGACCTACAACCGATGCCTCCAGATCCCATTCGGTGGCCAAG	65	-	chr2R	8836238	8836303	8836238..8836303	CG3884-RA,	FBgn0033786,	CG3884,	1	.
CG2127-RA	AGCTCCGGGGATGTCTCTCGCTTATGGCCCTCCCACATTTTCATTCCATAAGACTGAGGACTCTGTACT	69	-	chr2R	4255989	4256058	4255989..4256058	CG2127-RA,CG2127-RB,	FBgn0033286,	CG2127,	1	.
CG14892-RA	GGATGGGGCAAGGCCAACATTAGTGGTGATCTCTCCAATCAGCTGCTGAAAACACAGGTGCCATTGC	67	+	chr3R	12422374	12422441	12422374..12422441	CG14892-RA,	FBgn0038447,	CG14892,	1	.
CG15793-RA	ACTGAAAGTCCTGCACGAATGTAATTTCCCGCACATTGTCGGTTTCTACGGCGCCTTCTACAGCG	65	+	chrX	9142862	9142927	9142862..9142927	CG15793-RA,	FBgn0010269,	Dsor1,	1	.
CG11748-RB	GCTCAGCTGCCTGAAGAACAACATCAAGGTATTCGTGTTTCCCTAGGCTTTCCATCCGAGGCTGCCAAT	69	+	chrX	20287325	20287394	20287325..20287394	CG11748-RC,	FBgn0031109,	Obp19a,	1	.
CG11881-RA	TTAATCTTAGCACCTCGCCATCTGGACGCCTAGATGCACTGGTTCCACATACCGAGAGCCACCAG	65	-	chr3R	24954713	24954778	24954713..24954778	CG11881-RA,	FBgn0039638,	dgt6,	1	.
CG31622-RA	AGGGAAAATTTCGACCCGACGAATGCTTGATCATGCTTTTGACCTCCTCTACTTGGGATACTCCGTGGA	69	+	chr2L	21297073	21297142	21297073..21297142	CG31622-RA,	FBgn0041244,	Gr39a,	1	.
CG3014-RA	AGGTCGTACGGATCGCTTAACACGGATCACACAGGTCGGAGTCTGGACACTTTCGGATCCCTCTG	65	-	chr3R	3625469	3625534	3625469..3625534	CG3014-RA,CG3014-RB,	FBgn0037519,	CG3014,	1	.
CG17324-RA	GCCGTGGCACTACAAACGCATGGGAAGTCCGTTCATTAACCCCATTATGCCCATGAATTTCCTGCCCTA	69	+	chr2L	18820811	18820880	18820811..18820880	CG17324-RB,	FBgn0027074,	CG17324,	1	.
CG6470-RA	ACCAACCAGCAGGATCAGATGACCCAGCAGGAAAAACTTCAGAAGATTATCATGCGCGAGTCGGCA	66	-	chrX	18407242	18407308	18407242..18407308	CG6470-RA,	FBgn0030933,	CG6470,	1	.
CG17302-RA	TCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAGGACCAACACCAGATACCAGGTGGCA	69	+	chr2L	2655761	2655830	2655761..2655830	CG17302-RA,	FBgn0031443,	Prosbeta4R2,	1	.
CG15307-RA	ACCGCCAGAGGAGTCAGGAATTCAGTGGGAAAATCAGCCGAGAGCCGTACTAAGGAATCAACAGGGAAA	69	+	chrX	10229919	10229988	10229919..10229988	CG15307-RA,	FBgn0030192,	CG15307,	1	.
CG10445-RA	TGCAAGCTAGAAATTGCGAAAGTTGTGCTTCCAGAGGAAGGAGGAGAAGTGACCAAATGTGTTGGCGGT	69	-	chr3R	3742691	3742760	3742691..3742760	CG10445-RC,CG10445-RD,	FBgn0037531,	CG10445,	1	.
CG9075-RB	GAAAGAATTCTAAACAAAAAGTGAGTGAGCAAAACAGCAAACAAGAACTGCGAAATCGATAACCGAGCG	69	+	chr2L	5985200	5985269	5985200..5985269				0	no match
CG31609-RA	TTTGCCATTTTCCATCTGCTTCAGCCGTATTTTGGGTGTGGAATTTGGCATTTTTCCGCAGGCTGCAAT	69	+	chr2L	9098427	9098496	9098427..9098496				0	no match
CG15769-RA	ACCGTGGCTACGACAGTGTCAGTGGTTGTTATGGTGTAAATTTGGATCGAAACTTCGACTACGGCTG	67	-	chrX	5667641	5667708	5667641..5667708	CG42264-RB,CG42264-RA,	FBgn0259149,	CG42264,	1	.
CG11888-RA	GCCCCCAGAGCCCTTTGAGTACATCGAGGACTAAATGGGCATGCTGTTTGTCATTATCTAAGTGAATCC	69	+	chr3R	24982801	24982870	24982801..24982870	CG11888-RA,	FBgn0028692,	Rpn2,	1	.
CG31498-RA	CGCATAGAGCCACTCATCTGACGTCACCTCGAGTCCCCGATAATTATCGATGGGAGTTATGGCGCTGCT	69	+	chr3R	12490732	12490801	12490732..12490801				0	no match
CG32194-RB	TGAACAGAGCTCCCTTTGCAATTCCCAAACTCCCACTGTCTGTGTCTGCAAGTGACAGAGATGGAGCGA	69	-	chr3L	18079147	18079216	18079147..18079216	CR32194-RC,	FBgn0052194,	CR32194,	1	.
CG7395-RA	CGAGTGGCGCTTCTACATCCTATTCTTCTTTGTGGCCCACTCTATTGCCATGAGCTCCACCTGCTACAA	69	-	chr3L	20067849	20067918	20067849..20067918	CG7395-RA,	FBgn0036934,	sNPF-R,	1	.
CG10495-RA	CGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATTGCGGATGTCCACAAAGCTGGGCAAT	69	+	chr2L	19063726	19063795	19063726..19063795	CG10495-RA,	FBgn0032750,	CG10495,	1	.
CG5999-RA	AATCATCTATTGAACCCCCTGATCGGTAATCCCCTGGAGGTTTCCTATGCCGGAATCAGTAATCCTGCA	69	-	chr3R	8568816	8568885	8568816..8568885	CG5999-RB,	FBgn0038083,	CG5999,	1	.
CG15375-RA	CGCGAAAACTAAAGTTCTCCGGTATTTGTAAGCTAACCGATGAGGAACTGTCGCATCTCTACAAG	65	+	chrX	3995483	3995548	3995483..3995548	CG15375-RA,	FBgn0029694,	CG15375,	1	.
CG7320-RA	TCGGCAGGAAAACGAACTTAATTGTGACTTTAGCCAGGGTGTCAGTCGATGGGATGAACTGCCCTTGGG	69	+	chr3L	18196497	18196566	18196497..18196566	CG7320-RA,	FBgn0036782,	CG7320,	1	.
CG4091-RC	GCCACCCATCTCACCTGCAGTCGTTAGTCGATGCTAAGTTGGTTATGCTAAGTCGTCACCAGAACCTGT	69	-	chr2R	19586767	19586836	19586767..19586836	CG4091-RA,CG4091-RC,CG4091-RB,	FBgn0034894,	CG4091,	1	.
CG7115-RA	TGCGTTGGAGCATCTGAAAGAGCCGGACTTTGGCGCCAAATCACTTGCCATGGAGTCGTATAAACG	66	+	chr2L	7824648	7824714	7824648..7824714	CG7115-RA,CG7115-RB,	FBgn0027515,	CG7115,	1	.
CG15719-RA	CGATACGGTGAAAAGGCTTCGTACCATGATGCAACGATGTTCTCAGCTGCTTCCCGTCCTGGTCA	65	-	chrX	12898265	12898330	12898265..12898330	CG15719-RB,	FBgn0030440,	CG15719,	1	.
CG14698-RA	GGAGCTTATAAACCAATTTGCCGGCCCGATCAAAAGAAAATCTATGGAGTAGCGCGAAACGAGGCC	66	+	chr3R	6860228	6860497	6860228..6860235,6860438..6860497				0	no match
CG12147-RA	TTCCGGAACCAGTACAAGGTGTGTGACTTCCTCTTCGACTGGGTCGTTTTGAAGCGAGAGTCGCC	65	-	chr3R	1251832	1251897	1251832..1251897	CG12147-RA,	FBgn0037325,	CG12147,	1	.
CG2140-RB	AACGCGCAGTAGAAATCAACAAGTGATCACCATGTCGAGCGAGGAAACAAAGACTTTCACGCGGGCCGA	69	+	chr2R	3421084	3421153	3421084..3421153	CG2140-RB,	FBgn0033189,	Cyt-b5,	1	.
CG15887-RA	TGGTAGATGATTTGTTTCGGTTTTGGCTGACCAGGATGACAATGCAAGACCAGGGATAACGGCGAGCTG	69	-	chr3R	9113655	9113724	9113655..9113724	CG15887-RA,	FBgn0038132,	CG15887,	1	.
CG13991-RA	GCCCAACTACAACTTCAGGACCAACGTTGATATGCGCGACGGTCCCGAGTTTAGTCGACTCAAGGT	66	+	chr2L	6144671	6144737	6144671..6144737	CG13991-RA,	FBgn0031785,	CG13991,	1	.
CG9271-RA	GCCCATCCAGTGGTAGGATGATCCACAGACTTCACTAACCCCTGATCAACGACAAAAGCAATGCA	65	-	chr2L	13411176	13411241	13411176..13411241	CG9271-RA,	FBgn0003983,	Vm34Ca,	1	.
CG5214-RA	GATACGTCCTATGATGTACATCGCCCTGACCTACGATCACCGAATCATTGATGGACGTGAGGCGGTCC	68	+	chr3R	7072184	7072252	7072184..7072252	CG5214-RA,	FBgn0037891,	CG5214,	1	.
CG31650-RA	AGGTGGACCATCTCTTTGTCTCCACCGATGAGGATCACGACGATCGCCTGTCCTACCTGGAAATACTCA	69	-	chr2L	5040967	5041036	5040967..5041036	CG31650-RA,CG31650-RB,CG31650-RC,CG31650-RD,CG31650-RE,CG31650-RF,	FBgn0031673,	CG31650,	1	.
CG10539-RA	TATGAATATGATTATGTTTATGAGGCAGACGGAGAAGATGATTGTGCTACGAGAAGGAAAGCGTTCGTT	69	-	chr3L	5793115	5793184	5793115..5793184	CG10539-RA,	FBgn0015806,	S6k,	1	.
CG8728-RA	TGCGCTCGAAGATCCAGCTTCAGTCCATGTTACTAATGAACCTGGAGTCGAGACCCGTTGTGTTCGAGG	69	-	chr2R	3824774	3824843	3824774..3824843	CG8728-RA,	FBgn0033235,	CG8728,	1	.
CG13178-RA	GGGCTTTCAGGCCATGGACGGTAGTTTCATCAGGGACGTGGATCAAGATTACTACGCGGAATACGTTGA	69	-	chr2R	8031194	8031263	8031194..8031263	CG13178-RA,	FBgn0033685,	CG13178,	1	.
CG13158-RA	CCAATATGTTGGCCTCCATTCGACCAAGTCCAGAAACGGAACAACAAGACTGTGACTTCTTGGCCAGCA	69	+	chr2R	8281666	8281735	8281666..8281735	CG13158-RA,	FBgn0033727,	Or49a,	1	.
CG8790-RB	CCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAGACGAAGATCTACCTGCTGGCCA	69	+	chr3R	9194059	9194128	9194059..9194128	CG8790-RB,CG8790-RA,	FBgn0027610,	Dic1,	1	.
CG11556-RA	ATGTTTTTCCTGTAGGACACATTTGAACGAACTGATTTCTCAGCGCAGTCAAGGAAATATGAACCATAT	69	-	chrX	10643683	10643752	10643683..10643752	CG11556-RA,CG11556-RB,	FBgn0030230,	Rph,	1	.
CG2099-RA	ATTAAAACGCAACTTGGCTTTTTTATTAAGGCGAGATACCGATTGAAAGTTGACGGTAATCTGTA	65	-	chr3R	1291288	1291353	1291288..1291353	CG2099-RA,	FBgn0037328,	RpL35A,	1	.
CG9674-RB	AGAGCAGCTAATATCAAGTTTTGTGTGCGTGCATCGTCCTTAGCCTATAGTGCGAAATTCTTTAACGAT	69	-	chr3L	16781419	16781488	16781419..16781488	CG9674-RA,CG9674-RC,CG9674-RD,CG9674-RE,CG9674-RF,	FBgn0036663,	CG9674,	1	.
CG31109-RA	ACGGGTAGCACTACTCGGGAAGGAACCCATGCAGATTAATAACTGCTAACCTCGTCTCTGGTCGGTGGA	69	-	chr3R	20879287	20879356	20879287..20879356	CG31109-RA,	FBgn0051109,	CG31109,	1	.
CG13097-RA	TGCGACCGGTGAACACCCCGCAAGAGTACAGAAAACAACTTGTGCTTGACCAGGAGAAATCAAAACAAT	69	-	chr2L	8513345	8513414	8513345..8513414	CG13097-RA,	FBgn0032051,	CG13097,	1	.
CG33458-RA	TCGATCGATTCACCTGTCGCTACTGGTTTGGATACATGGTTGATCGTACTCACATTTGTGCGGGCGAAA	69	+	chr2R	12374990	12375059	12374990..12375059	CG33458-RA,	FBgn0053458,	CG33458,	1	.
CG9702-RA	CAGTGTAGTGAGTGTCTTCGAGGGATTGAACACGAGGCTGGTGCTTTGCTACAACACCCATGCCC	65	+	chr3R	26407588	26407653	26407588..26407653	CG9702-RA,	FBgn0039787,	CG9702,	1	.
CG9734-RA	AACGGAGCATAAACATGAACAGCGATGAGGTGCAACTGATCAAGAAGACCTGGGAAATCCCCGTGGCAA	69	-	chr3R	11723600	11723669	11723600..11723669	CG9734-RC,CG9734-RB,CG9734-RA,CG9734-RD,CG9734-RE,	FBgn0027657,	glob1,	1	.
CG17129-RA	GACCTGGTTCCCTACGCAGAGAATATGATTCGGGTTCGCACTGACCTGTTGCAGGAGCAAGTTGACC	67	-	chr3L	678760	678827	678760..678827	CG17129-RC,CG17129-RA,CG17129-RB,	FBgn0035151,	CG17129,	1	.
CG32087-RA	AATTCCCTGGCCTATCTAAGCCATCTGGTTCGTGCTTTCGAGCTGTGTGCCTTCATCATGGTCACCTG	68	+	chr3L	11726340	11726408	11726340..11726408	CG32087-RA,	FBgn0052087,	CG32087,	1	.
CG40244-RA	TTTGACTATAAGTTACCTGTTAACGACGATTAATACGTGTGCAAGGGAATGGAAGGTATGCAAGT	65	.	.	.	.	.				0	no match
CG10388-RA	TGCCATTGCGATTTTCCGTTCTCCCAGTGTAATTAGAGCCTGAGTTGTTTGAGAGAGTCTTCGCGGGCT	69	-	chr3R	12483383	12483452	12483383..12483452	CG10388-RA,CG10388-RB,CG10388-RC,CG10388-RD,CG10388-RE,CG10388-RF,	FBgn0003944,	Ubx,	1	.
CG1411-RD	CGATCCTAAGGTGAGAAGTGTAGGGTGTATATTGTTTTAAACACAAGCAAATCCAAGTATCAGGGAGTA	69	+	chr3R	1400701	1400770	1400701..1400770				0	no match
CG13109-RA	GCAGCGCTACGAGGTGACCCTAAGGTGCCTAGTTCAGAACCAAGGATCACGTACAACCAAAACTTCTCT	69	+	chr2L	9245791	9245860	9245791..9245860	CG13109-RC,CG13109-RD,CG13109-RE,CG13109-RF,CG13109-RG,	FBgn0041092,	tai,	1	.
CG1552-RA	TGTAGGCTATAATTTAGATTGTAACATATATAAGCTGGTATTCATCAAACTGAGCACAAAAAAAAA	66	-	chrX	10946377	10946443	10946377..10946443	CG1552-RA,CG1552-RB,	FBgn0030258,	CG1552,	1	.
CG33189-RA	TCGAAGAGCAGAAGATCGAGTGTAAAGTGGTCCAACAAGGATGAAGTGTGTCCCGATTGCCAGGAACCT	69	-	chr3R	4605935	4606004	4605935..4606004	CG33189-RA,	FBgn0053189,	CG33189,	1	.
CG9781-RA	CGCGTCCTACAACCCTTGACAAAATGTGTGCTGGCAAGAAGGATGGAGTGATGCTTACAAAGAACGGGT	69	-	chr3L	11945902	11945971	11945902..11945971	CG9781-RA,	FBgn0036228,	obst-G,	1	.
CG6115-RA	GGCCCTGTACTCGCTGAAGAAGTACCGAAGTGTCAAGCAGCGCTATAGTTACAATGACTAAGTGGGCGG	69	-	chr2L	16887453	16887522	16887453..16887522	CG6115-RA,	FBgn0040985,	CG6115,	1	.
CG2040-RA	GCAGTTGTTGGACGAGTGTTGATTAGTTAGGAGCTAAGAAATGCCAAGCTAAGTGGCCCTTTAAAGTCA	69	-	chr2R	5115420	5115489	5115420..5115489	CG2040-RB,CG2040-RA,CG2040-RC,CG2040-RD,	FBgn0010114,	hig,	1	.
CG33263-RA	TGACCATTGTGAGATGTCCTTACAAGTATGGCTGGGACTTTCCTACAAAGCAATGCAAGCCTAGCAGC	68	-	chr3L	13416614	13416682	13416614..13416682	CG33263-RA,	FBgn0053263,	CG33263,	1	.
CG4119-RA	GCGAGCCAATCGTGAAGAACAGCTTCATTGATTTCTAAATCCACCTTGTTAGCGTTAATTAATAAATAT	69	+	chrX	5564427	5564496	5564427..5564496	CG4119-RA,	FBgn0028474,	CG4119,	1	.
CG10553-RA	TGCATCCCCAGACAAAGGATGAGGATGTTAGCCAAAAACAGGTCACCATTCCGGATTGGGTTAAGCCAA	69	-	chr3R	21143726	21143795	21143726..21143795	CG10553-RA,	FBgn0039324,	CG10553,	1	.
CG3365-RB	GTTTCCATTGCTAATCATCTGCTTTTCGTGTGCTAATTTTATACACTAGTACGTGCGATATCGGCCGTG	69	-	chr2L	833845	833914	833845..833914	CG3365-RC,CG3365-RH,CG3365-RF,CG3365-RG,	FBgn0020304,	drongo,	1	.
CG1200-RB	TGCATCGACTACTTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCACCG	65	+	chr3L	1198322	1198387	1198322..1198387	CG1200-RA,CG1200-RB,	FBgn0040281,	Aplip1,	1	.
CG7453-RA	GGCCAAATTGAATTTAAAGCCAACTGATTTTCAACACTAAATTCGAGTGGACTCTTAAGTTTAAGCATT	69	+	chrX	19075504	19075573	19075504..19075573	CG7453-RA,	FBgn0030991,	CG7453,	1	.
CG33178-RA	GCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGCTATCTTTTTTGGTCCACAGTCCTGGT	69	+	chrX	14976950	14977019	14976950..14977019	CG33178-RA,	FBgn0053178,	CG33178,	1	.
CG11505-RB	GGGCGCTGAGTATGGGATCCAGATTCAGGAGGGCAACAATACTAAGAACGTTACTAAGCAGAGCTCCAG	69	+	chr3L	3230975	3231044	3230975..3231044	CG11505-RA,CG11505-RB,CG11505-RD,	FBgn0035424,	CG11505,	1	.
CG40108-RA	AATTTAATCAGTCACCATATATTAGACAGCATGATCACGTCTCACCAAATGGTACTAGTTCCGTG	65	+	chrU	1340705	1340770	1340705..1340770				0	no match
CG11405-RA	ACGAAATCGATACCCGAACTCAGCTGCAGGCAGAAACGGGAAACACAATCCAATCCCCATGAAAACCCA	69	-	chrX	1137405	1137474	1137405..1137474	CG11405-RA,	FBgn0028550,	Atf3,	1	.
CG6262-RB	AATCGCAACAGCAGAGAACCCTGGGGATACAGCACGATCCAGATTGTCCATGTGCCGGACCACAG	65	+	chr2R	12249795	12249860	12249795..12249860	CG6262-RA,CG6262-RB,CG6262-RC,	FBgn0034121,	CG6262,	1	.
CG15817-RB	AGAAACGTTTTCATGTAACAAGCTGCAACAGAACTTCATTCACTCACAAATCACACACGTTTGTAATGT	69	+	chr3R	25060552	25060621	25060552..25060621	CG15817-RC,CG15817-RD,	FBgn0028476,	CG15817,	1	.
CG14285-RA	CTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGCAGCAACAGTACTCCAAAATTTGGCACTTGCC	69	+	chr3R	14851494	14851563	14851494..14851563	CG14285-RA,	FBgn0038674,	CG14285,	1	.
CG11790-RA	AGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACCCAGAGCCATCCTCA	69	+	chr3R	20874416	20874485	20874416..20874485	CG11790-RA,CG11790-RB,	FBgn0039265,	CG11790,	1	.
CG9949-RA	ATATTTTTGGTGAGATTTCGCAGATTTGTATAACACACTTTCCTGTCGAATGCGAAAATCGTGGCTGAC	69	+	chr3L	16850922	16850991	16850922..16850991	CG9949-RA,CG9949-RB,	FBgn0003410,	sina,	1	.
CG14318-RA	TGCCCACCATATCTGTGAGTCGTTCCTCGGAAGAAGGGGATGAACTGGCTAAGATCGAGGACGAGC	66	-	chr3R	13605043	13605109	13605043..13605109	CG43102-RA,CG43102-RB,CG43102-RC,CG43102-RD,	FBgn0262562,	CG43102,	1	.
CG31679-RA	GGCCCGTTTGTGGAATCGTCCTACTTCATGGGCCGACAAATTCAGGGAGCTGGTATTATCACCGATCCT	69	-	chr2L	2237879	2237948	2237879..2237948	CG31679-RA,	FBgn0051679,	CG31679,	1	.
CG33218-RA	TCCAATAATTCCACCCATCGAAGCTAACAAAATGATACCGAGGCCTCAAAATGGATTCGTCAGCCGAGC	69	+	chrX	2224546	2224615	2224546..2224615	CG33218-RA,CG33218-RB,	FBgn0053218,	CG33218,	1	.
CG32104-RB	GCTCCGGATTTGCATGAGCTGCTTCGTGATTGCCTGATGGATTTCTACAGGGAGAATGCAGCCCATGAA	69	-	chr3L	12387421	12387490	12387421..12387490	CG32104-RB,	FBgn0052104,	CG32104,	1	.
CG30272-RA	CTTCAGTTCCCTTCTGGGCCTTGATGGTCACTAGGTGCTGTCAGTCCTGGGGATATTCCACGCTC	65	+	chr2R	18718442	18718507	18718442..18718507	CG30272-RA,	FBgn0050272,	CG30272,	1	.
CG15324-RA	GCGGTGCTCTCACTTGAGGAGTCACTGTACCGACTACGTGATGAGGATGACCCAGGTATTACAGTGGCT	69	+	chrX	7770367	7770436	7770367..7770436	CG15324-RA,	FBgn0029966,	Ir7c,	1	.
CG3443-RB	TAAAGAGTACACAAATGAAACAAATCCCGCATTACATAAGCCTAAGCGATAAGCGAACTTCGGACAGGA	69	+	chrX	2131307	2131376	2131307..2131376	CG3443-RB,	FBgn0003048,	pcx,	1	.
CG33485-RA	AGCAGAACGAACCCTTCGGAAGGCTGCTCAACACTGCATTAAAGACACAAACAAAAGGCAAAGGGAAAA	69	-	chr3R	10882437	10882506	10882437..10882506	CG33485-RA,	FBgn0038282,	dpr9,	1	.
CG31472-RB	TCCACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGACAGCAAACTGGTTCACA	69	+	chr3R	3637148	3637217	3637148..3637217	CG31472-RA,CG31472-RB,	FBgn0051472,	CG31472,	1	.
CG13220-RA	TGGATAAGCTGCAGAAGAACTAGATGATCTGATCGATACGATATAGGACTGAGGTATTCGAACCCAAAA	69	+	chr2R	7172441	7172510	7172441..7172510	CG13220-RA,	FBgn0033608,	CG13220,	1	.
CG33208-RA	GCTGCGGAGTTCTCCACCCAATACCAAATGCCAAACCTGGAGTTCGCTGTTAATCACTACGGCAAACCA	69	-	chr3R	5845904	5845973	5845904..5845973	CG33208-RC,CG33208-RH,CG33208-RG,CG33208-RD,CG33208-RA,CG33208-RB,CG33208-RE,CG33208-RF,CG33208-RI,CG33208-RJ,CG33208-RK,CG33208-RL,CG33208-RM,	FBgn0053208,	Mical,	1	.
CG5655-RA	GACTCGAACAACGTCAAACCAAAATCTAGAAGTACGCAATTTTAATAAAGGAAATGCGGAACAGTTTC	68	-	chr2L	10262435	10262503	10262435..10262503	CG5655-RA,	FBgn0011305,	Rsf1,	1	.
CG15429-RA	CGACCTCGTGTCCTATTCCCTCCCATATTGGAAGTGGCCATATCGGAGTTTTGCAAAACACCGGGGG	67	+	chr2L	4353345	4353412	4353345..4353412	CG15429-RA,	FBgn0031596,	CG15429,	1	.
CG8776-RA	TGCCCACTTTCAATCTCTCAGTAGGTGTGTAGGATTAGGAATCTCAGCAGATGAGCAGAAGACCAAGCA	69	-	chr2R	8547409	8547478	8547409..8547478	CG8776-RF,CG8776-RE,CG8776-RG,CG8776-RA,CG8776-RC,CG8776-RB,	FBgn0261673,	nemy,	1	.
CG6125-RB	CCCTTCGCCTTCGAGTATCAGAATCGCACCTATGTGTTCACGGATATCCTCCATGAGCTGGGCAGC	66	-	chr3R	11229802	11229868	11229802..11229868	CG6125-RB,CG6125-RA,	FBgn0038337,	CG6125,	1	.
CG11362-RA	TCATTACAAATGTGGACAGGGATATCCCGGGAAAGAGAAAACCGAAGATTACTCAGTACTTCAAGCTGA	69	+	chr2R	18450148	18450217	18450148..18450217	CG11362-RA,	FBgn0034737,	CG11362,	1	.
CG32511-RA	ATCGGCCAGAACGATTAACGCTCCTCTGATAAAACACATTATTGATTTGGGTGGTTCCTACGGCGGAG	68	-	chrX	21027620	21028084	21027620..21027661,21028057..21028084				0	no match
CG40267-RA	GCGACCATACGCTGAAGTGGGTGTCTTAGATTGGATAGTAATGGGACTGTTAGATACTGGAGCGGCACA	69	.	.	.	.	.				0	no match
CG1429-RD	GGAACCAAAAACGTTTTTTGATGGTTGGCCTAATTGATTTGAGCCGAGATCACAGCCTTGTGCAAGCAA	69	-	chr2R	5803264	5803333	5803264..5803333	CG1429-RF,CG1429-RC,	FBgn0011656,	Mef2,	1	.
CG1134-RA	TGGTCTACGACAACTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTGGTTTCTTCTCTGGCG	69	+	chr3L	4022028	4022097	4022028..4022097	CG1134-RA,	FBgn0035483,	CG1134,	1	.
CG40178-RB	TCCGCCATCTCTGATCGCTCAAACGGTAAGAGCAGACAACGAAGGAGGAATCCCTCAATCAAATGGGAA	69	-	chr3LHet	1335092	1342669	1335092..1335116,1342624..1342669				0	no match
CG30427-RA	TGTGCGAGAGTTTGATACCAATATTGCAAGTGTTTTAATTGAGGAGAATACCAAGCAATACTCAA	65	-	chr2R	20824827	20824892	20824827..20824892	CG30427-RC,CG30427-RB,CG30427-RA,CG30427-RE,	FBgn0043792,	CG30427,	1	.
CG4049-RA	TGGACCCACGAAGCCACTAGACGATCAAAATACGCCTAAATCACCAAACGGTGCCTCTCACTCGCCAAT	69	-	chr2R	19996983	19997052	19996983..19997052	CG4049-RA,	FBgn0034976,	CG4049,	1	.
CG13065-RA	TGGTAAACGAGGTCCATACCACCCATCATCGTTTTCCGCATGCATTTCGTTTTGTTTGGATCGGTCAGA	69	+	chr3L	16271072	16271141	16271072..16271141	CG13065-RA,	FBgn0036590,	CG13065,	1	.
CG3107-RB	TGTTCACAGTCCCATATCTCCACCAAGACCATCCAACACTGCGAGTTTTGGCAAAATTGCTATCAGCCA	69	+	chr2R	982037	982106	982037..982106	CG3107-RB,CG3107-RA,CG3107-RC,	FBgn0033005,	CG3107,	1	.
CG1599-RA	TGCATTCCGTAAGGCCTCCCGAAATTTGGCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGT	69	-	chr2R	5728780	5728849	5728780..5728849	CG1599-RA,	FBgn0033452,	CG1599,	1	.
CG40195-RA	TTGGAGCTAATCAACAGAACGGCAGAGAATGTCTCCGTGTCCATTTCAAGTATGCAACGGTACCGAGCT	69	-	chrU	1047339	1047408	1047339..1047408				0	no match
CG15481-RA	TGCGAAAGTTGGTTGAAATAAAGTAATCTTTTCTATTCCAATCTTGTCGTTTTTTACAATTGAAGGGCA	69	-	chr2L	13221427	13221496	13221427..13221496	CG15481-RA,	FBgn0032487,	Ski6,	1	.
CG7344-RA	CCGAGCGCATGTTCCTCCAGGTTGTCGGAATCTTACGCGATGAGAATGAGGTTTGTGTACTGGCTAACA	69	+	chr3R	15412186	15412255	15412186..15412255				0	no match
CG40322-RA	GTACTCGATTTCGTACTGGGTCCCGTACTGGTTCCGTACTCGGTTCCGTACTCGGTCCCGTACTG	65	.	.	.	.	.				0	no match
CG2711-RA	AGGCTAAGGATTAGACACTTAGTTCAATAAAACTGATTTTTGTTCCAGAAAAAACTGAAAGAAAA	65	+	chrX	2624027	2624092	2624027..2624092	CG2711-RA,	FBgn0000520,	dwg,	1	.
CG31067-RA	ACCTGTCCCAAGTGACGTGCGTTCTAAACTTAGCAGGATTTTTATCGCAAACCGCAAATTTCGGGGGAT	69	+	chr3R	22986018	22986087	22986018..22986087				0	no match
CG11664-RA	CCTGGCAATAGCCTTTCGAAAATGCGGAGATAAGCGATATCCCGCCCTCTTTACGGACGTCCACTACCA	69	+	chrX	770393	770462	770393..770462	CG11664-RA,	FBgn0040341,	CG11664,	1	.
CG4461-RA	TCGACTCCGTCCGCTCTACCATCCGCCGTATGATTTCCAGCTATATCCGTATCTGTGGGACGATTCGC	68	+	chr3L	9368630	9368698	9368630..9368698	CG4461-RA,	FBgn0035982,	CG4461,	1	.
CG9109-RA	CGCATATATACTTCGCCATCAAAACCTGTGCGAAATTCCACAAGGAACGCATACCAATCATCGAGCGCA	69	-	chr2L	6032841	6032910	6032841..6032910	CG9109-RA,CG9109-RB,	FBgn0031765,	CG9109,	1	.
CG6345-RA	TTTGGAGTAGGTGACTTTTTGGCCGTCCGCATTGAGGAATCCAACTCACAGGTGCTGAAGGGCAC	65	-	chr3R	6240009	6240074	6240009..6240074	CG6345-RA,	FBgn0037816,	CG6345,	1	.
CG40470-RA	GGTTCGCCTGCCTAAGGAAGTTTTGCCTCTAAGCTATGAAGTCCTCATTGAACCGCATATGGATAACCA	69	-	chr3L	23928111	23928180	23928111..23928180	CG40470-RA,	FBgn0058470,	CG40470,	1	.
CG3422-RA	TGAACCGAATGCATACTTTTTTTAATTACCACTTTCTATTCTTCGGAACCCTGTAAAACGGTATGAAAA	69	+	chrX	16171496	16171565	16171496..16171565	CG3422-RA,	FBgn0004066,	Pros28.1,	1	.
CG33480-RA	GCTGCCTGCTCCACATGTCCAAGGATCAGATTGCGATTGCCAGAGTTTCGGCGTTGTTTTGTTTTCGTT	69	+	chr2R	5134383	5134452	5134383..5134452	,CG2040-RB,CG2040-RA,CG2040-RC,CG2040-RD	,FBgn0010114	,hig	1	.
CG31413-RA	GGCTGCCATTAAGCAATTCTTGATCTTTGTCGACCTTAAGCCCCAGAAACCGTTGCCAAAAACCCCACC	69	+	chr3R	19529338	19529407	19529338..19529407	CG31413-RA,	FBgn0051413,	CG31413,	1	.
CG1976-RA	ATTTTTGCCCACCTTAATAACATTTTGACGCTTTACGGGGATTTTTGTCATGGTTTTTCGAGCGGTTTG	69	+	chr3R	27670796	27670865	27670796..27670865	CG1976-RC,CG1976-RD,CG1976-RE,CG1976-RF,CG1976-RG,	FBgn0039883,	RhoGAP100F,	1	.
CG32110-RA	ACGCTGGACTAGAAAGGTGGATCTGTTTAGCATGGACCTCATACTTGTGCCTGTTCACCAAATGCTCGT	69	+	chr3L	12802698	12802767	12802698..12802767	CG32110-RA,	FBgn0052110,	CG32110,	1	.
CG15673-RA	GAAGATCCATTCCTCGTGCTGCGTAGACGGCCAGTCCTATCTCTTCAGCGTGGAGAACGTTCTCC	65	-	chr2R	17497397	17497677	17497397..17497450,17497665..17497677				0	no match
CG40497-RB	GTCCCAGGACGAGCGTTGCCTCGCCCCAAAACGATACACCCTGTCCCATACCATCCTAATCCTGG	65	+	chr2L	22407339	22407404	22407339..22407404				0	no match
CG8631-RA	TCCACGTGGATGACCACTTGCTGTATACGGAGGAGAAGGAGTATGTCCACAACTACCTCACAGACGACA	69	-	chr3L	7117323	7117392	7117323..7117392	CG8631-RA,CG8631-RB,	FBgn0002775,	msl-3,	1	.
CG17514-RA	GTCAGAGAGACAATGCTCCATGCACTTCGAAGTATTGTCAGTCGATCTGGAGACAAAATGTCGGAACCA	69	+	chr2RHet	2820302	2820371	2820302..2820371	CG17514-RA,	FBgn0039959,	CG17514,	1	.
CG17181-RA	GCTCCGTGTGTGATAAAGCATTGACTTCCCATCGGCAACTGAATCATCCGTCTATATTCGAGGCGG	66	-	chr3L	589012	589078	589012..589078	CG17181-RA,	FBgn0035144,	CG17181,	1	.
CG5753-RA	AAGCATAAGCATCGGCGAATGTCGGAAAGCCGTATACCGTACCCCATGACCGGTCGATTTGCCAAAAC	68	-	chr2R	14006439	14006507	14006439..14006507	CG5753-RA,CG5753-RB,	FBgn0003520,	stau,	1	.
CG7754-RA	CGAGAGCCATCAATTTAGCCAGTACGAGTCCATCGGGTGGAACAACAGTCACTGTCACGGGTTGGG	66	+	chr2R	7244632	7244698	7244632..7244698	CG7754-RA,	FBgn0015001,	iotaTry,	1	.
CG14115-RA	TGGGTGGAGTTTTCGTTCTTGGCTTGAGCTTAGCACATTGTTTTCTGGTGTTTCCTCGTCAGGGATCCT	69	-	chr3L	13054397	13054466	13054397..13054466	CG14115-RA,	FBgn0036343,	CG14115,	1	.
CG1637-RC	GCGATTCGTCGATGGTGGAAAGAAGGCTCGCACTCAGTACATACACAATGTGGAACTGAAGGATCTGGA	69	-	chrX	10765885	10765954	10765885..10765954	CG1637-RC,	FBgn0030245,	CG1637,	1	.
CG15373-RA	CGCGATGTCCACGATACCAAGTTCAATGAGGACAAGCTATCCATACAGTTTCGAACAGGCAGATTGGGT	69	+	chrX	17941785	17941854	17941785..17941854	CG15373-RA,CG15373-RB,	FBgn0030889,	CG15373,	1	.
CG8738-RA	TGAATTGCGCATTGATCCGGCTGAAATCGTAGGGGTTATTCGGATTCCAAACAAATTCCCAGCGAGTGT	69	+	chr2R	4583972	4584041	4583972..4584041	CG8738-RA,	FBgn0033321,	CG8738,	1	.
CG32186-RA	GGGCAATCGCAGTTCCTGGCACCTGGAAGACTATTCCCTATCACAGCCATCCTTGGAAGATGCATTTGA	69	-	chr3L	17785240	17785309	17785240..17785309	CG42816-RB,	FBgn0261998,	CG42816,	1	.
CG13425-RD	ATGCCGCGACAAATGTGCCTCAGGGTCATGATCCCAACAACAGCACACAGGTCACCATTCCAAAAG	66	+	chr2R	16493056	16493122	16493056..16493122	CG13425-RB,CG13425-RA,CG13425-RC,CG13425-RD,CG13425-RE,	FBgn0015907,	bl,	1	.
CG1745-RA	ACCATCTCGACGAGTCATTGGCCAAGAGGAAGCGTAAGAGCGTGGCTAACTCAAAACCAAACAAAAGCA	69	+	chrX	11349425	11349494	11349425..11349494	CG1745-RB,CG1745-RA,	FBgn0030301,	HP5,	1	.
CG7304-RA	GCCGAAAACTTGGTGTTCGTGGATGCACAAGTGGAGTTTACAAATGGCTGGTTATCCCCATTACTTGAT	69	+	chr3L	15673422	15673491	15673422..15673491	CG7304-RB,	FBgn0036527,	CG7304,	1	.
CG17477-RA	ACGGCTGGTCACTGTGTCAAAGGATACCCGACTAGCAGACTTCAAGTGGCCACTGGTACAATTCGCTAT	69	-	chr3R	12952391	12952460	12952391..12952460	CG17477-RA,	FBgn0038479,	CG17477,	1	.
CG4125-RA	AATATAGAAGCTAGATCTTGACAGTCGCCTTAACTTATGACACGCCCATACATCTCAAAACGCCCATGC	69	-	chrX	2846677	2846746	2846677..2846746	CG4125-RA,	FBgn0003285,	rst,	1	.
CG32066-RB	AGCCTCCGCGTAACGTAGCAAAGAAGTCGGACAAAAAGTGGGACGCATATATCAGCAGCAACAATATTT	69	-	chr3L	10633997	10634066	10633997..10634066	CG32066-RC,CG32066-RB,	FBgn0052066,	CG32066,	1	.
CG9842-RA	CCTCCCCCTGCGATAATGCGATAATTTAAGATGAAAAACCCCAGCAGAATCCCCATAATCCCCAGAGGC	69	-	chrX	16451128	16451197	16451128..16451197	CG9842-RA,CG9842-RB,	FBgn0011826,	Pp2B-14D,	1	.
CG2081-RB	GCTGCCCACTGTATGAGTGCAAGAGCTACGAGTCGAATTCGGGGGGAACTCTGGAGCAGACCAACATAT	69	+	chrX	10983835	10983904	10983835..10983904	CG2081-RB,CG2081-RC,	FBgn0030262,	Vago,	1	.
CG9388-RA	CTTCAGCGAGTCATCCTGCAACAGGTAGCTTCATCTCCACCCGCGTTTTTGTCTGCGATGCGTTG	65	-	chr3R	5383529	5383594	5383529..5383594	CG9388-RA,	FBgn0024833,	AP-47,	1	.
CG9581-RA	GCGGAGGCGTTTTAAGAGCTCACAACGAAAACCAAATTCCTAGTCATAAGCCTTTCATTCTCCCG	65	-	chrX	20062133	20062198	20062133..20062198	CG9581-RA,	FBgn0031093,	CG9581,	1	.
CG3759-RA	AGGAACTACAGAAGATTCGGGATCCAGCAAGCCGATAACAGCTACTCCCCCAAATACAGGAGGCGGTG	68	+	chr2L	9425964	9426032	9425964..9426032	CG3759-RA,CG3759-RB,CG3759-RC,	FBgn0032116,	CG3759,	1	.
CG15785-RA	GCGAGTATGCTGGACAGGATGGTGCCGACACCTACTGCATGGACAAGTGTCTCAACTATGAATCGGAGT	69	+	chrX	5200129	5200198	5200129..5200198	CG42749-RC,	FBgn0261803,	CG42749,	1	.
CG14650-RA	GGAGAATCGACTAATTTACGACCAAAGCATTGCCGAAACTCTGCACACCGAGAAGGCGTGGACGGA	66	+	chr3R	265747	265813	265747..265813	CG14650-RA,	FBgn0037252,	CG14650,	1	.
CG33321-RA	GGTTCAGCGTGATGCACTATGAACGTGGTAGTTGGCAACCCACAATGTTCAACCTTCACTCCCCGAACT	69	-	chr2L	20816888	20816957	20816888..20816957	CG33321-RA,	FBgn0067311,	CheB38b,	1	.
CG31644-RA	ACTTTGGCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAAGAGGAAGTACAGG	69	-	chr2L	5818164	5818233	5818164..5818233	CG31644-RA,	FBgn0051644,	CG31644,	1	.
CG3634-RA	CCGTAGCCGACAAGTTTTCGCCAGACATAGCATCCAAGCGAGGTCTAAGTCAAGCTGAAATGAGCGCC	68	-	chr3L	20800926	20800994	20800926..20800994	CG3634-RA,	FBgn0037026,	CG3634,	1	.
CG31317-RA	GGCAGAGGAGGAAACGCCAAACTACATGAACTGCTAGGCCATCCCAACGACACATATTGTAATCGAAAG	69	+	chr3R	10433183	10433252	10433183..10433252	CG31317-RA,CG31317-RB,CG31317-RC,	FBgn0020299,	stumps,	1	.
CG15308-RA	GACAGGCCCCCATCTACGATGCTCCACTGGTGCAGTCCTATGGTGGATGGTTGAAGCAGAAGTAG	65	-	chrX	10112128	10112193	10112128..10112193	CG15308-RB,	FBgn0040941,	CG15308,	1	.
CG15254-RA	AAAACGGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAACTTATGGGGCAGCGATTG	65	-	chr2L	15614033	15614098	15614033..15614098	CG15254-RA,	FBgn0028949,	CG15254,	1	.
CG30412-RA	GTGGAGCGATGCAGTACGCCTATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCC	65	-	chr2R	19206335	19206400	19206335..19206400	CG30412-RB,CG30412-RA,	FBgn0050412,	CG30412,	1	.
CG40245-RA	CCGGACCCCCAATGGTTAGGAAATCTGAACACCGTTCAGCTATATGTTGTTTGGCTCTTCTAAAAGCCA	69	-	chrU	688016	688085	688016..688085	CG40245-RB,	FBgn0058245,	CG40245,	1	.
CG11458-RA	ACCTGTCTCGCCTCTTTTCCATTCTCAATTGTTTTAACGATGTGTTTTCATTACTTCCTTGTTTAATTT	69	+	chr3L	20899335	20899404	20899335..20899404	CG11458-RA,	FBgn0040637,	CG11458,	1	.
CG5902-RA	CGTGGCTGCATTGGTACTTTTAGTGCAATGGAACTGCACCATGGTCTTCGGGAGTACGCCTTGACC	66	+	chr3R	19813422	19813488	19813422..19813488	CG5902-RB,CG5902-RA,CG5902-RC,	FBgn0039136,	CG5902,	1	.
CG3382-RA	GCGCCAGGTCTCTCGTACATGGATGATAACTCCGCAAGTTCCAAGACCCCAGCAATGCTAAGTATGGGA	69	-	chr2R	18110156	18110225	18110156..18110225				0	no match
CG3097-RA	GGTGGCAATATCTGGAAGGAGAACTCCAAGTTTCTGGACATCTCCATTGCCAGGGATCAACTGAAGGCC	69	-	chrX	5661448	5661517	5661448..5661517	CG3097-RA,	FBgn0029804,	CG3097,	1	.
CG31536-RC	ATTTTCCAAAGCAAAACCAAAAACCAATTTCGCCTCAAAATTCTAATCCAGTCTTGTACGAGCATTGAA	69	+	chr3R	749736	749805	749736..749805	CG31536-RC,	FBgn0051536,	Cdep,	1	.
CG15916-RA	GCCAAAGATCAAGTTTGTCCGGGACAAAACGAGCACTGGTCTCCATCAGGTCCACGAGGTTCTGTCC	67	+	chrX	15785237	15785304	15785237..15785304	CG15916-RA,	FBgn0030704,	CG15916,	1	.
CG1544-RA	GGACACTGGCTTGGATTACTCACTACTTCATTACATTGGTCAGCAGAGTGTGACTTTCCCCGAAGACTT	69	.	.	.	.	.	CG1544-RA,CG1544-RB,CG1544-RC,	FBgn0039827,	CG1544,	1	.
CG31030-RA	GGTGAGTCTCTCGGGACACGGAGAAGAGGATGACTCTGAGATTCTGTTGGCCTACAACGAAGCCGTGAA	69	-	chr3R	25991628	25991697	25991628..25991697	CG31030-RA,CG31030-RB,	FBgn0051030,	CG31030,	1	.
CG11842-RA	CGCACCCCGAATTTAGCTACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTAA	69	+	chr3R	24879004	24879073	24879004..24879073	CG11842-RA,	FBgn0039629,	CG11842,	1	.
CG3906-RA	CGGAGTGGAGTATTCAATGTGTCTCCATTGTATGTATGTAAGCCCAATAAAGCAACAAGTGAAAG	65	-	chr2R	19398828	19398893	19398828..19398893	CG3906-RA,	FBgn0034871,	CG3906,	1	.
CG17379-RA	ACCGCACCGCGTATGATTGCCTATCGCAACAAGAAGGGTAATGTGGTCTATGATGGAACCGTGGGTCAT	69	+	chr3R	19231909	19231978	19231909..19231978	CG17379-RB,	FBgn0259194,	Ir94e,	1	.
CG12239-RA	ATGGATTTGTCCCGACGCATGGAACGTGAACAGACTGAGCGAGACTCTGAGGAACGCATCGAGAG	65	+	chrX	5687192	5687257	5687192..5687257	CG12239-RA,	FBgn0029810,	CG12239,	1	.
CG6055-RA	TCTGTGCTGTTCGCTTATCGAGTTTTGAGCCCCGCTTTGTGTCGTTCGTTTCAATCTAAAGCTATCCAA	69	.	.	.	.	.	CG6055-RA,	FBgn0031918,	CG6055,	1	.
CG9771-RA	TGCAGGCCGAGTTAGAGCAGAACCCGACAATATAGATACTACTGAAGTGTCTGTGTTCAACTTCAAGGG	69	-	chr3R	470632	470701	470632..470701	CG9771-RA,	FBgn0040466,	Dip2,	1	.
CG9720-RA	AGCCAGGATCGGCCCTCTTTTGGTATAACTTGGACACGAAGGGTAACGATCATATGGGTTCCCTGCACA	69	-	chr3R	26336152	26336221	26336152..26336221	CG9720-RA,	FBgn0039783,	PH4alphaNE2,	1	.
CG32156-RE	GGCGGGATCTTCGTACTCCACAAGCGATCGATATGTCAGCCCCTATTCGAGTAGTTATGATAAGGGTGT	69	+	chr3L	16069384	16069453	16069384..16069453	CG32156-RE,CG32156-RF,	FBgn0005536,	Mbs,	1	.
CG6044-RC	AGCCCACGCAAAAGAGCTCAGAACTCACAAAAAACCCTGGTGACAAAACAAAGTTCAGTGTCTCGGCCG	69	+	chr2R	18291713	18291782	18291713..18291782	CG6044-RA,CG6044-RE,	FBgn0034725,	CG6044,	1	.
CG3081-RA	GCACGCTTGGTGAGGCCGATTTCTTCGACAAGGACATCCTGAGGAAGCGAACGGATTTTGGCGGT	65	-	chrX	4534122	4534187	4534122..4534187	CG3081-RA,	FBgn0025613,	CG3081,	1	.
CG12441-RB	CGACTGGCAAAGATAGCCGGCCTAAACCGCCTAAAGACAGATGGTGATCCAGGACAAACGGGATCG	66	+	chr2L	10125043	10125109	10125043..10125109	CG34109-RC,	FBgn0083945,	CG34109,	1	.
CG31424-RA	TCAACTCAGCCCATAGACTCCGGAATTCCAATGGTTTTCTCGTCGCTATTGATTGTGGTTCCCTGCGGA	69	-	chr3R	17942134	17942203	17942134..17942203	CG31424-RA,	FBgn0051424,	Ir94b,	1	.
CG7384-RA	TCCAGCAGGGGGTATGTCCGTACAGAATCTGTGATAGTGCTAACCTGCAATGGCGTCCATAGCATAGTT	69	-	chr2L	10507918	10507987	10507918..10507987	CG7384-RA,	FBgn0032262,	CG7384,	1	.
CG7355-RA	GTGAGTCAAGGGTCGTGAGAAATGGCAGAAACAACGATATTTCGAATATTTTCAATGAGAACTGTCGGC	69	+	chr3L	15643254	15643323	15643254..15643323	CG7355-RA,CG7355-RB,	FBgn0004589,	Eig71Eb,	1	.
CG2238-RA	AGACCACGCTTGTATCCCACTGAAGAAGTCTGATCCCGTCGTCTCCTACCGTGAGACTGTGTCGG	65	-	chr2L	21679134	21679199	21679134..21679199	CG2238-RA,CG2238-RC,CG2238-RB,	FBgn0000559,	Ef2b,	1	.
CG6058-RA	GTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACCAGTCGATCCTGGAGAACGCCAATGTC	65	-	chr3R	22083232	22083297	22083232..22083297	CG6058-RB,CG6058-RC,CG6058-RD,CG6058-RE,CG6058-RH,CG6058-RI,CG6058-RJ,	FBgn0000064,	Ald,	1	.
CG4096-RA	GGTGAGTCCAACGAACCGTTCCAACGAATCGTGTCCATTAAACGCAATCTTCTCATAGCCTTGGGTGA	68	+	chrX	5602196	5602264	5602196..5602264				0	no match
CG11440-RA	TCGGCCTTCAACGGCTTATTGCTCGATGGCGATTACGAGAATTTCGGCTATGGGTGAGTATCTCGCCAA	69	-	chr3L	22452354	22452423	22452354..22452423	CG11440-RA,	FBgn0037163,	laza,	1	.
CG40411-RC	CGCACCATGCCAGATCCTACTAAGAGCTATATAAGAAGTGATGGGGTTGAAATTCCTTACGGAGAAACC	69	+	chr3RHet	2026580	2026649	2026580..2026649	CG40411-RB,	FBgn0010247,	Parp,	1	.
CG40342-RA	GGAGGAGGGTTAGTACAAGCTGCGATGGAAAGCGAGAAGTTCATGTCGTTAAGAGGAGAAGCTGCGACA	69	+	chrU	556943	557012	556943..557012				0	no match
CG13296-RA	ACTCTCCGAGGATGTGTATAGCTTCAATGCCATCTTCGAACTGCATGGTGGACAAGTGCGCGTCCG	66	+	chr3L	6156615	6156681	6156615..6156681	CG13296-RA,	FBgn0035687,	CG13296,	1	.
CG10376-RA	TGCCCGAGTCGCTCATAATCGAAACCGTTTACGATTCCCTAGCGGATACCACAATGAAGTTGGACGACA	69	-	chr2L	18701730	18701799	18701730..18701799	CG10376-RA,	FBgn0032702,	CG10376,	1	.
CG6367-RA	AAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGATTGTGAGCCCCTAATCGATGG	65	-	chrX	18379950	18380015	18379950..18380015	CG6367-RA,	FBgn0030926,	psh,	1	.
CG9691-RB	ACAGCCCATTAATCTTATGATTACAGGGATTTTGCAATCGCTTGAAGGTCCCCTCCGTCTCGTTGCATA	69	+	chrX	9778944	9779013	9778944..9779013	CG9691-RB,	FBgn0030160,	CG9691,	1	.
CG11672-RA	CCTGTTCACTTATTGCTTATGCATGACATTTATTTGACAAGTTTTTGATTGATTTTACAGCTGCTGCAG	69	-	chr3R	4115307	4115376	4115307..4115376	CG11672-RA,	FBgn0037563,	CG11672,	1	.
CG4039-RA	CGTGGACGAATGCAATGAGGTGGTGGACTATGCCATTGCTCGCAAGATCGTTGATCTGCACTCGAACAT	69	+	chrX	6570121	6570190	6570121..6570190	CG4039-RA,	FBgn0025815,	Mcm6,	1	.
CG1982-RA	TCCTATCGCTGGTCCTACGTCACGCTGATAACTGATAACCGCGAATTCAGAAGTCCACTAGTGTAAGGT	69	+	chr3R	2878165	2878234	2878165..2878234	CG1982-RA,	FBgn0024289,	Sodh-1,	1	.
CG1471-RB	TGATGTGATGCTATCGCTGAACACCGGGGTTCTCTTCGACGGACATCCCATAAACACCGACTTTGGC	67	+	chr3R	26290796	26290863	26290796..26290863	CG1471-RB,CG1471-RA,CG1471-RC,CG1471-RD,CG1471-RE,	FBgn0039774,	CDase,	1	.
CG15696-RA	GCCAACAAACTAGCCGACTCCTTGGAGCTGACCAATACGCGGGTGAAGATCTGGTTCCAGAATCGA	66	+	chr3R	16673201	16673267	16673201..16673267	CG15696-RA,	FBgn0038833,	CG15696,	1	.
CG13835-RA	AGGCAACTCGAAACAGTTTTGGTGGACCAAAGTCCTCGGGAAATCAGAAGAAAGAGTCAGCAGGGG	66	-	chr3R	18827094	18827160	18827094..18827160	CG34375-RA,CG34375-RB,	FBgn0085404,	CG34375,	1	.
CG15047-RA	GTCGCAAGTTGAGCAATTGCATCTGAAATCTCCGCCAGAAACGGCTGCAGCAGGAGCAGGATCTC	65	+	chrX	18422746	18422811	18422746..18422811	CG15047-RA,	FBgn0030938,	CG15047,	1	.
CG2045-RA	GCATTTTGGCAACTGCAACTCGGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTGCG	65	+	chrX	9759501	9759566	9759501..9759566	CG2045-RA,	FBgn0019929,	Ser7,	1	.
CG32056-RA	AATGAAACTCCTTGTTAATTTTGATGAACATACTGAACTCAGGCTTCCTTCGAGAGGACATTGCCAGAA	69	-	chr3L	10213903	10213972	10213903..10213972	CG32056-RA,CG32056-RB,CG32056-RC,	FBgn0052056,	scramb1,	1	.
CG2091-RA	AGCTGCGCATGTACTTTCATTACCAGCCGTCCTTCTATCACCTCCACGTGCACATCAATCCAGTACGGA	69	-	chr3R	1579484	1579553	1579484..1579553	CG2091-RA,	FBgn0037372,	CG2091,	1	.
CG6641-RA	AGACACACCGACCTAGCATCATGCAGTCTACTCCAATCATTCTGGTGGCAATCGTCCTTCTCGGCG	66	-	chr2L	7497283	7497349	7497283..7497349	CG6641-RA,	FBgn0011283,	Pbprp5,	1	.
CG9596-RA	GGGCAAAGAAACACTGGAGCTGAAGTCTCTTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGT	69	-	chr2L	6561385	6561454	6561385..6561454	CG9596-RB,	FBgn0031832,	CG9596,	1	.
CG11628-RA	AGCGCTACTGTCAACTAAATCCAGATATATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAA	69	-	chr2L	21742558	21742627	21742558..21742627	CG11628-RA,CG11628-RC,CG11628-RD,	FBgn0086779,	step,	1	.
CG6202-RA	TCTGTGGGACTTCCAGTTCTTACTGCGAAACTTTGCACTCATCGGAGCCCTACTGCTCGTCCTGG	65	-	chr3R	11170463	11170528	11170463..11170528	CG6202-RA,CG6202-RB,	FBgn0019925,	Surf4,	1	.
CG9168-RA	GCGAACCCACTGAAACGGTAACCAACCAAAGGCTCCTCAGAAAAGTGGCTCAAGAGGTGGTGCATCATA	69	+	chr3L	1412692	1412761	1412692..1412761	CG9168-RA,	FBgn0035216,	CG9168,	1	.
CG15389-RA	GCAAAAATGTGTTTGTCGTTTCGACCGCCAAGGACCTCTTTGCGAGCTGCCCATTATCATCCGGAATGC	69	+	chr2L	2346442	2346888	2346442..2346449,2346826..2346888				0	no match
CG15480-RA	CAAAACCGCCGGCTATACGCACAAAAAGTTTGGCAAGAAGAGCTCCAAGGATATCGCCCCCAACC	65	-	chr2L	13225073	13225138	13225073..13225138	CG15480-RA,	FBgn0032489,	CG15480,	1	.
CG9675-RA	AAATACAGGAACAAAATGATGCAGCCGAGACTAGTGATTTTGGGTCTGATCGGATTGACGGCGGT	65	-	chrX	16595880	16595945	16595880..16595945	CG9675-RA,	FBgn0030774,	spheroide,	1	.
CG31957-RA	AGCCACCAGCCAAAACAAAGACGACTCCGATTTCGAGGATGATCTCCTGCCCAATACAAATCGGCCTG	68	-	chr2L	3871611	3871679	3871611..3871679	CG31957-RA,	FBgn0051957,	CG31957,	1	.
CG3136-RC	TGAGATTGAGCCTGTCGGAAAACAATTAAGCATGTCCAATCGACGGTTACTATGGGCTGATTCAGAGGA	69	+	chr2R	1040574	1040643	1040574..1040643	CG3136-RC,CG3136-RA,CG3136-RB,	FBgn0033010,	Atf6,	1	.
CG1644-RA	GCACGCCTGTCTACATATCGGTGTTGGGAATCCATCGTGATGCACAGTACTGGCCAAATCCCGAAGTCT	69	-	chrX	21388835	21388904	21388835..21388904	CG1644-RA,	FBgn0031182,	Cyp6t1,	1	.
CG10508-RC	CGCCAACATCAAATGCAACTAGGCGGGAGTATCTCATCTGGAACCTCCCCCAGAGTGCCAAAGAAGTGA	69	+	chr3L	21208861	21208930	21208861..21208930	CG10508-RG,CG10508-RJ,CG10508-RK,	FBgn0037060,	CG10508,	1	.
CG6097-RA	TGGCGGATCGTGAAAAGGCAATACATGAGGATGCCATTTGGAATGTTGAGGAGCACCGCTATACACAGA	69	-	chr3L	11578171	11578240	11578171..11578240	CG6097-RA,	FBgn0003292,	rt,	1	.
CG9554-RA	TATGCCAACCGATACACCAAAGACCACAGCTCCCTGATGACCATCGCCTTCCGCATGGAGGAGAT	65	-	chr2L	6528841	6528906	6528841..6528906	CG9554-RA,CG9554-RB,CG9554-RC,	FBgn0000320,	eya,	1	.
CG15566-RA	AATTTCGATAATTGCAATGCGAATGTCTACTGTGGTCAGAAGGCAAAGCAACTAGGGCCAATTAC	65	+	chr3R	27192843	27192908	27192843..27192908	CG34347-RB,	FBgn0085376,	CG34347,	1	.
CG3325-RA	GCCTGCGAGAAGAGGCATCCCGAAATGGAGCTGAATTTTCTGGGAAACATCTTTGTGGAAAATCACATT	69	+	chr3R	10154539	10154608	10154539..10154608	CG3325-RA,	FBgn0003480,	spn-B,	1	.
CG11854-RA	CGCGTCTCCAAGGGCGATCATCAAACCTACGCCGAGGTGATGAACATAAAGGTTGAGCTGGATCCATCC	69	+	chr3R	21068466	21068535	21068466..21068535	CG11854-RA,	FBgn0039299,	CG11854,	1	.
CG9441-RA	AGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGCGTACATCGACAACGCCAGG	65	+	chr2R	17067085	17067150	17067085..17067150	CG9441-RA,CG9441-RD,	FBgn0003162,	Pu,	1	.
CG11391-RA	CGGCGGACTACGAAAAGATTAAGGACATAGGAGCCTCGCTGGGAGCTCTGATCATCACCGTTAACGGGA	69	+	chr3R	15604905	15604974	15604905..15604974	CG11391-RA,	FBgn0038732,	CG11391,	1	.
CG15454-RA	CAGCAGTCACATTGATGCGGGTTTCGAAAGCGACAGCATTTCGGTAACAGGATCGCCGCGAAAAA	65	+	chrX	20436235	20436300	20436235..20436300	CG15454-RA,	FBgn0259162,	RunxB,	1	.
CG8677-RA	CCTTTGATCTTACGTATTAACATTAAGAAACGTTAATTTTCAAGTTTTGAATATGGTTTAGGGAGAATT	69	+	chr2L	21233949	21234018	21233949..21234018	CG8677-RA,	FBgn0026577,	CG8677,	1	.
CG4000-RA	GCCTTAACCCCCTTTGATGGTCATTTAAGTTAGTCCTAAAGCTAGTCAATGTTTTTGGAGCTCAC	65	-	chr3R	16501993	16502058	16501993..16502058	CG4000-RA,	FBgn0038820,	CG4000,	1	.
CG15871-RA	CGCGTGCAGGACTACTAGAACTACTCAATGGGGTGCTGTTAAGTTTTGTGTGTAATAGTGGTTAACAAG	69	+	chrX	14121867	14121936	14121867..14121936	CG15871-RA,	FBgn0030552,	mRpL38,	1	.
CG9883-RA	CCACGAAAGGCGCAGAAAGACATTGTATATATTCGTAGTAGGTCCTGCTAAAAGTAAAAGTAAAGTTAT	69	+	chr2L	2579072	2579141	2579072..2579141	CG9883-RA,	FBgn0031435,	CG9883,	1	.
CG9825-RA	CGAGGACTATCTGCAGACACAGAACCCGGAACTTGCCAATAGACCACCTATGCAGGCGTTATCCTTTCC	69	+	chr2R	18726689	18726758	18726689..18726758	CG9825-RA,	FBgn0034783,	CG9825,	1	.
CG31008-RA	CCGCCAGTACAATATTTAGGAAGCTAGAAAGGGGAAGGGATTTTAATTTGTCAAATTATAAGACGTTAA	69	-	chr3R	26815243	26815312	26815243..26815312	CG31008-RA,	FBgn0051008,	CG31008,	1	.
CG41103-RA	TGGGATCCCGAAACAAAGCCGAAAGACAGAAACTCAAAATTCAGAGCCCTAACACTCAAACACTCAGCA	69	+	chrX	22261257	22261326	22261257..22261326				0	no match
CG4656-RA	AGCTGAAACGTCGGTGCTCTATCAATGGTCACTACTACAATCGGGAGACGTCGTTTTTCACGCCGCCC	68	-	chr3R	18940933	18941001	18940933..18941001	CG4656-RA,	FBgn0039055,	Rassf,	1	.
CG40317-RA	GCCATGACATTACAGCACGTGTGTTCAGACAAAAGTTGAAGTCTTTAATAAGTTTCATTACTAAATCAC	69	-	chrXHet	167562	167631	167562..167631				0	no match
CG8643-RA	TGCACCCAATGACTTGTGTGCGAAACAAACAAAATGTCTAGGGCGATATGCAGTCAACTGTAACGTGGT	69	+	chr2R	4499166	4499235	4499166..4499235				0	no match
CG2263-RA	CCACTCTCACCAAGTTGGAGACGGATCTCACGGTGGAAATGCTCGCAAATGGATTGTGGGACCAG	65	-	chrX	8038919	8038984	8038919..8038984	CG2263-RA,	FBgn0030007,	CG2263,	1	.
CG13209-RA	GTCAACTGGACAGCGGATACATGAGCACCGATTCAACGGAACTGTACAAGCGAAATGTCTACGATCGGT	69	+	chr2R	7222994	7223063	7222994..7223063	CG13209-RA,CG13209-RB,	FBgn0003382,	sha,	1	.
CG30330-RA	GTGTGCGAGGACGATATGCGCTCCTGAACAAGGATCTTCAGGCGATTGTGACCGAATCCCAGTCG	65	-	chr2R	18992071	18992136	18992071..18992136	CG30330-RA,	FBgn0041236,	Gr59d,	1	.
CG9027-RB	GCCTGTGGTGTTATTGGCATCAAGTAAATATCCCTTCCAACGTGTCAGCCAAATCAATATGCTGCTCGA	69	-	chr2R	7269031	7269100	7269031..7269100	CG9027-RB,CG9027-RA,CG9027-RC,	FBgn0033631,	CG9027,	1	.
CG9629-RA	TGCCAGCGTTGTCCATCGCGAAACCTTTGCACCAATTGTGTACATCCTCAAAGCCAAAAACGTGGACCA	69	-	chr3L	19260234	19260303	19260234..19260303	CG9629-RA,	FBgn0036857,	CG9629,	1	.
CG2960-RA	GGTTAACCATCTAAGTAAATATATGTACATTTTGTGAAACCACATCTAATCGAAATGTATTGCAT	65	+	chr2L	4228463	4228528	4228463..4228528	CG2960-RA,	FBgn0003941,	RpL40,	1	.
CG9122-RA	GGAGTGCGCTACAACCCGTACACGATGAGTGTTGAAGTCCTGTCGAATGCCAAGAAGATCACAGCGGTG	69	-	chr3L	1191013	1191082	1191013..1191082	CG9122-RA,	FBgn0035187,	Trh,	1	.
CG31688-RA	AGCCAAGGGGAATCGGGATGTTTTCGGAATTCACAATCATGGTTCGATTTAGTGGGTCATGTGAAAGTT	69	.	.	.	.	.	CG31688-RB,CG31688-RC,	FBgn0051688,	CG31688,	1	.
CG6462-RA	GCTTTAATACGACTGCCAAGAAAAGTCAGAACTTCAGAACAAGTGCAACCCATTGAGTTGGCTGG	65	+	chr3L	6030720	6030785	6030720..6030785	CG6462-RA,	FBgn0035663,	CG6462,	1	.
CG9641-RA	GCGGTAGAGCCCATGAGGATGTAAAGAAGCAGAGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATA	69	-	chr2L	2976055	2976124	2976055..2976124	CG9641-RA,CG9641-RB,	FBgn0031483,	CG9641,	1	.
CG9889-RA	AGGCGAGAGCTTCTACCTGATGGACGGCATGTTTGCACTGAACAACGACAAGCGCAATCTTTACTTCCA	69	+	chr2R	19267200	19267269	19267200..19267269	CG9889-RA,	FBgn0041712,	yellow-d,	1	.
CG14234-RA	AAGTACGGACGTATTTCTCAATCCACAGTACGGATTAAGCCCTTTTAGCTGGACACACCTACAACCAAT	69	+	chrX	19633747	19633816	19633747..19633816	CG14234-RA,	FBgn0031065,	CG14234,	1	.
CG15171-RA	CACTGGTGATTCTGGCCCGATCCATGGTGCAGGATTTGGAGAATGGGGACGAGCTGAGTTACGTG	65	+	chr2L	19011143	19011208	19011143..19011208	CG15171-RA,	FBgn0028569,	robl37BC,	1	.
CG5148-RA	GTGGTGATGGGGCATCAAACTCGGAGGATGATCTGCAAATAGCCCTGGCTATGTCGAAGGCCACCTAC	68	+	chr3R	12916362	12916430	12916362..12916430	CG5148-RA,	FBgn0038478,	cal1,	1	.
CG11852-RA	GCGCTGATCCTGCAACCAGCAAGTTTGAGATGTACGGATCCTTTCCCAAGATCGTGCTGAAGGGC	65	+	chr3R	21063929	21063994	21063929..21063994	CG11852-RA,	FBgn0039297,	CG11852,	1	.
CG8690-RA	AACTTCGGATCGGTAGCTAAAACCGTTGACTTGAGTCAGTTTGACAAGAGCCGTACCGAAAGCCTGCAG	69	+	chr2R	4361197	4361266	4361197..4361266	CG8690-RA,	FBgn0033297,	Mal-A8,	1	.
CG11617-RA	TCTGACCGAGCGGATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGAAAAGTA	69	-	chr2L	205397	205466	205397..205466	CG11617-RA,CG11617-RB,	FBgn0031232,	CG11617,	1	.
CG11968-RA	CGCACCGCTTTGAAAAGGTGTCCAACATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTA	69	-	chr3R	4809043	4809112	4809043..4809112	CG11968-RA,	FBgn0037647,	RagA,	1	.
CG4013-RC	TGTCATTTGTTATTTGTCCTTTGTCTTTCGGTCGTTGATTCCCTCTGCTCCTCACACAGCTCCAGCCT	68	-	chrX	12580208	12580276	12580208..12580276	CG4013-RA,CG4013-RB,CG4013-RC,	FBgn0024308,	Smr,	1	.
CG33342-RA	GCTCATCTGTCATCGCCTTTTACTGGTTTATTCGTGTTGCAGGCTCGGAGATCGGAATGCAGGTGCCT	68	+	chr3R	20203059	20203127	20203059..20203127				0	no match
CG31363-RE	AACCCTACACTCCCGTATCCAGGTCAGAAAATCGAAAGGCACGAAAGTAGGACATGATGGCCAACGAAT	69	-	chr3R	7416688	7416757	7416688..7416757	CG31363-RD,CG31363-RH,CG31363-RE,CG31363-RC,CG31363-RA,CG31363-RB,	FBgn0051363,	Jupiter,	1	.
CG14224-RA	CCCATCAAGCCGGAAATGTCAGGAATCCATCATAGCCACATGCCAACATACCAACACCCCCAAGACACA	69	+	chrX	19580293	19580362	19580293..19580362	CG14224-RA,	FBgn0031057,	Ubqn,	1	.
CG15498-RA	TTTGGTTATGGCTCGGTACCTGCTGTGGCATCCAAACGACCCAATCAAATGAGCTGTTGCAAGTTTGCC	69	-	chr3R	17393279	17393348	17393279..17393348	CG15498-RA,	FBgn0038892,	CG15498,	1	.
CG3342-RA	GCGATTCGACAAGGAACCGGATGAGAAGGAATTCATAACGTTTATGGTCAAAAACAAACTGCCAGTGGA	69	-	chrX	6421235	6421304	6421235..6421304	CG3342-RA,	FBgn0029874,	CG3342,	1	.
CG9060-RA	ACAACACCCTTTCAAGTGCTTCTCGAGGACATATCCGGCAATAGTTTCATCGAGAATCCCCTGGCACCT	69	-	chrX	9055398	9055467	9055398..9055467	CG9060-RA,	FBgn0030096,	Zpr1,	1	.
CG9588-RA	CCGAGGCGATGGATCACTGATGTAGCTTTGTGTTTAAGCTTTTTTCGAGTTGCCTGTGCACTCCTGCCC	69	-	chr3R	9501175	9501244	9501175..9501244	CG9588-RA,	FBgn0038166,	CG9588,	1	.
CG32147-RA	GCGTCGTCAGATCGAAAGCTCATTGTAGTCTCCGGATTTGGTCCATTTCTCGGTCACGAAGCGGTCAAC	69	-	chr3L	15137037	15137106	15137037..15137106	CG32147-RA,	FBgn0047178,	CG32147,	1	.
CG31102-RA	GGGCTGAGTGTAAAGTTTGCACCAAAGTGCCACCATGCGGAGGATATCAAAGGAAGGATCTGCCTGGTT	69	-	chr3R	21120333	21120402	21120333..21120402	CG31102-RA,	FBgn0051102,	CG31102,	1	.
CG32387-RB	AGCTGTCAGGTTGACAACGGCATTGGAACTGATCGACTGACGCACACCTTAATCGTTCAAGTGCCACC	68	-	chr3L	7158818	7158886	7158818..7158886	CG42256-RI,CG42256-RH,CG42256-RG,CG42256-RK,CG42256-RM,CG42256-RJ,CG42256-RL,	FBgn0263218,	Dscam2,	1	.
CG9293-RA	ATACGGCGACTGGACAACGATTTAGCACGCTTCGAGGGTGAGATTCAGGAGAAGGCCTCATCCAC	65	-	chr2L	13386788	13386853	13386788..13386853	CG9293-RA,CG9293-RB,	FBgn0032516,	CG9293,	1	.
CG33309-RA	GGTACGACAAGCATATGTGACCATTTTGCAAATTGCTACCCCTCGTTGGACTCACTTGGATGCCTCACT	69	+	chr2L	14811918	14811987	14811918..14811987	CG33309-RA,	FBgn0053309,	CG33309,	1	.
CG6108-RA	AGCGAGGTGCTGCCACTCCAACCAATATGGAGCCACAACTACCAGAGGTCTATGTGGAACCCGAG	65	+	chr2L	13280448	13280513	13280448..13280513	CG6108-RA,	FBgn0032498,	CG6108,	1	.
CG6146-RA	TGGCCTCCTGGATCGAGAATGTGCAGGGACAGGTCAAGTACATCATGTTGAATCCCTCCTCGAAACTCA	69	+	chrX	15218726	15218795	15218726..15218795	CG6146-RA,CG6146-RC,CG6146-RB,CG6146-RD,	FBgn0004924,	Top1,	1	.
CG6013-RA	AACATTTTAGGATCGGAATTCATTCATAAAGGACACAATGCCAAAGAAAATGGGAATCAACTCGAAGGC	69	+	chr3R	14857255	14857324	14857255..14857324	CG6013-RA,	FBgn0038675,	CG6013,	1	.
CG30108-RA	ATAGATCCGATCTTCGAAACCGGGCTTGAGGAGAATAATGCGAATAGATCTGATGCAAAACAGCA	65	+	chr2R	13557227	13557292	13557227..13557292	CG30108-RB,CG30109-RA,	FBgn0050108,FBgn0050109,	CG30108,CG30109,	2	.
CG12035-RA	CCGACTCCGAGAGCGACATATGCAGTCAGCAGAACAGAGCGAAATTGCCTGAATCCCGTTGGCGT	65	+	chr3L	1724984	1725049	1724984..1725049	CG12035-RA,	FBgn0035263,	CG12035,	1	.
CG13048-RA	TGGGTGGTGAGGCAAAGCCCTCTCATCTTCACTACAATCACTTCGATCCCCACCATGTCAACCACTTTG	69	-	chr3L	16276586	16276655	16276586..16276655	CG13048-RA,	FBgn0036593,	CG13048,	1	.
CG14945-RA	TGTCCATCGTCTGCTGATCAGCTACTTGCGGGATCAGTTAAAGGACCTGATAGCCCATCCTTCGCT	66	+	chr2L	12051126	12051192	12051126..12051192	CG14945-RB,CG14945-RA,	FBgn0032402,	CG14945,	1	.
CG6156-RB	CCAAGCTGAAGGGACGTCGTTCCAATGTCCAGCATACCATTGTCAGTTTGGAATCACCCTTCAGCGACA	69	-	chr3R	11190777	11190846	11190777..11190846	CG34404-RC,CG34404-RD,CG34404-RE,	FBgn0085433,	CG34404,	1	.
CG17523-RA	CGCTGCGAAATGTCAGTATACCCTATTTTCTTCGCCAAGTAAGCCTGGTACCCAAGGAGAAGGTGGACA	69	+	chr2R	14287359	14287428	14287359..14287428	CG17523-RA,	FBgn0063498,	GstE2,	1	.
CG31330-RA	CCAGCCGCCTTAAGACTGTGATCAAAACGACAATGGTGAAGCGAAGTCCTAGCCATGACTCAACGGCAA	69	-	chr3R	10257824	10257893	10257824..10257893	CG34389-RC,CG34389-RD,	FBgn0086901,	cv-c,	1	.
CG4079-RA	TCTCGTTTCCAACTTTACGGAAGAACAGCTGGATCGCTACGAAATGTATCGTCGCTCTGCCTTTCCCAA	69	-	chr2L	9762771	9762840	9762771..9762840	CG4079-RA,	FBgn0011291,	Taf11,	1	.
CG7443-RA	GGTGGTTAGATTATCTTATCCTTACCCACACCTTATAACACCTCTCTAACACTAGCTATTAAATGGGAT	69	+	chr3R	4150614	4150683	4150614..4150683	CG7443-RA,	FBgn0037577,	CG7443,	1	.
CG1418-RA	GCAGCGAAGACGTGTATCTAAGATAAGTGTTAGGACGAGGTTGGGAAAGCACAAGCAAAATGGCACACA	69	-	chr2R	5852211	5852280	5852211..5852280	CG1418-RA,	FBgn0033468,	CG1418,	1	.
CG1417-RC	GGCCATCCGATCTAAAATAGTCAAATAATACTGTTCATAGGAGCCTGGGATAGCCAACCGCGCATACCT	69	+	chrX	21255741	21255810	21255741..21255810	CG1417-RC,CG1417-RF,CG1417-RG,CG1417-RH,CG1417-RD,CG1417-RE,CG1417-RB,CG1417-RI,CG1417-RJ,CG1417-RK,CG1417-RL,CG1417-RN,	FBgn0003423,	slgA,	1	.
CG33264-RA	ACGCCCTACTGAAAGACAGTTCTACGCTTCGGAGCAAAGGATAGTGTTCCTTCTTGGAACCATTTGCCA	69	-	chr3L	12960687	12960756	12960687..12960756	CG33264-RA,	FBgn0041622,	Or69a,	1	.
CG15004-RA	CGGTACTCGTGGGAGAACAATCTGTACCACCTAATCCTTTCGCTGATCATACCGAACGTGCTCTTT	66	-	chr3L	4180834	4180900	4180834..4180900	CG15004-RA,CG15004-RB,	FBgn0035505,	Teh2,	1	.
CG31040-RA	CCTGTCCAACGTTCTTGAAGAGTTGGGCTTGTCCATCAACCTTCAGTTGTCTCAGATCCTCACGCTGCT	69	-	chr3R	25756454	25756523	25756454..25756523	CG31040-RA,	FBgn0051040,	Cog7,	1	.
CG10423-RA	ACAGTTCTTGTCGTATTTGTTTATAGAAAGTGGATAATTGCCAACAGGATAGATAGTGGAGCTCAATCG	69	-	chr3R	21071827	21071896	21071827..21071896	CG10423-RA,CG10423-RB,	FBgn0039300,	RpS27,	1	.
CG15157-RA	GTCCACATTTACGCTCACATCCTTCGACAGTGATATCGGACACGGCCTGAAAGAACGCGAGTCGC	65	-	chr2L	18203908	18203973	18203908..18203973	CG42750-RB,	FBgn0261804,	CG42750,	1	.
CG15062-RA	GAAATTGAATGCCAGCAGTACGCATCTGGACTGGGAGAACACCTGCAATCTGAAGCCCACGGGTC	65	+	chrX	18173804	18173869	18173804..18173869	CG33542-RB,	FBgn0053542,	upd3,	1	.
CG2822-RA	CAGCATCGCGACACCCAGGAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAAAAACC	65	+	chr2L	3721819	3721884	3721819..3721884	CG2822-RA,CG2822-RB,CG2822-RC,	FBgn0003386,	Shaw,	1	.
CG41087-RA	TGCTTGTCAAAGTCCTGCCAGAGCTTATCTGTTAGACGTTTGTTTACCAGAAGATCAAGCAAGAGGCCT	69	-	chrU	2089814	2089883	2089814..2089883	CG41087-RB,	FBgn0069947,	CG41087,	1	.
CG15439-RA	TGCAAGAGGAGCAAGGATCAGCATCTGTTGGTCAAATGTGACACTTGCAATTTGCACTACCACCTGGGC	69	-	chr2L	4451115	4451184	4451115..4451184	CG15439-RA,	FBgn0031606,	CG15439,	1	.
CG2047-RA	TCGCAGAGTTAGAGAAGAAATCTAGCAATACACATCCGATATGGCCACCACAAACAGCCAGAGCCACTA	69	+	chr3R	2690075	2690144	2690075..2690144	CG2047-RA,	FBgn0001077,	ftz,	1	.
CG15593-RB	TTCTGCTAACGCGTCTACATCCCCATGGAGTCCTAGAAGTCTAGGCAGAATTATAGCCCACTGCA	65	+	chr3R	2092038	2092103	2092038..2092103	CG15593-RB,	FBgn0037417,	Osi10,	1	.
CG11495-RA	GCTCTGAGTTGCTCCTGACCAAGTCGGATGGTCGCTCCAAGACCAAAACTTTTTGACCTCGCCAAAAGT	69	+	chr3L	3163645	3163714	3163645..3163714	CG11495-RA,	FBgn0024194,	rasp,	1	.
CG17370-RA	CACTGGACGGTCTCAAGCGTAATGGACTCGTCTCGGGTCTCTACCTGCCTCATATCGATGCTGCTGATA	69	+	chr3R	21711364	21711433	21711364..21711433	CG17370-RA,CG17370-RB,CG17370-RC,CG17370-RD,CG17370-RE,	FBgn0039381,	CG17370,	1	.
CG12123-RA	TGGTCTGGCTGCAATTCGAGGAACCGGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTG	65	-	chrX	8335876	8335941	8335876..8335941	CG12123-RA,	FBgn0030039,	CG12123,	1	.
CG9155-RC	AGGGCGACTTGATTCTGATCATTCCGCGCATAATCGAGTTCAGCACGTATATCATTGACACCGTGGGAA	69	+	chr3L	1329058	1329127	1329058..1329127	CG9155-RC,CG9155-RB,CG9155-RD,CG9155-RA,	FBgn0010246,	Myo61F,	1	.
CG15924-RA	GGCCAGTTCGCCAAGTATTCTAATTGGAAGCGTTAACAGGCAGGAAGCGATTGGCAGTGCAAATGGAAA	69	+	chr2R	12197448	12197517	12197448..12197517	CG34399-RC,	FBgn0085428,	Nox,	1	.
CG31529-RA	GGCCAGGGTTGTCATACTGTCGTGTAGTTGACAAACATTTGTACATAAGCGTCTGACAGAGTTGCCCTC	69	-	chr3R	630711	630780	630711..630780				0	no match
CG9015-RA	CGTGCAATATTCGAGGGCGTACAAATGGTTTTCATGTGATATAATTGTAGCGTACATATGTTTTTGTAT	69	-	chr2R	7411987	7412056	7411987..7412056	CG9015-RB,CG9015-RA,	FBgn0000577,	en,	1	.
CG12743-RA	AATGGCAGTCAGTTTAGTTTCTATACTACTCCATCGCCGCATCATCACCTGATAACACCGCCGAGG	66	-	chrX	8379862	8379928	8379862..8379928	CG12743-RA,CG12743-RB,CG12743-RC,	FBgn0003023,	otu,	1	.
CG9935-RA	GGGATCCTCGAAAGCGAAAGAAACTATACCCCACCTGACCGTTCATTTTGGATCGAAATTGCTGAGGAA	69	-	chr4	657038	657107	657038..657107	CG9935-RA,CG9935-RB,	FBgn0039916,	CG9935,	1	.
CG11727-RB	TCTGGAATCTCGCATGAAGGATGAGCTGATGAATGTGAAAATCAAATTCACCGAGCAAAGCCAAACGGT	69	-	chrX	11329621	11329690	11329621..11329690	CG11727-RD,CG11727-RC,CG11727-RA,CG11727-RB,	FBgn0262740,	CG11727,	1	.
CG3086-RD	GCATCCAGGACGTCATTAGCAACAAGTGGATTGCCCAGTACAATGCTGTTCCACAGACACCGCTCT	66	-	chrX	5655299	5655365	5655299..5655365	CG3086-RB,CG3086-RC,CG3086-RD,CG3086-RE,CG3086-RF,	FBgn0013987,	MAPk-Ak2,	1	.
CG17299-RA	GCGTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACATCGAGACCGCCGAC	66	+	chr3R	17037129	17037195	17037129..17037195	CG17299-RK,CG17299-RI,CG17299-RJ,CG17299-RA,CG17299-RB,CG17299-RF,CG17299-RC,CG17299-RE,CG17299-RG,CG17299-RM,CG17299-RN,CG17299-RO,CG17299-RP,CG17299-RQ,CG17299-RR,CG17299-RS,	FBgn0025803,	SNF4Agamma,	1	.
CG13481-RA	AGCTCGGAGTCCCTAAACAAGATGAAGTCTCTTGTGGGGAAGATGATCTTCATGCAAGTCACCGAACAT	69	-	chr3L	14362662	14362731	14362662..14362731	CG13481-RB,	FBgn0036421,	CG13481,	1	.
CG5235-RA	CCGGAACGTTGCACTCACATCAAGCTGGTCGCACAATTAGTCTTCGACATGTTCGATCTGGTAAGGAGT	69	-	chr3L	16081967	16082036	16081967..16082036	CG5235-RA,	FBgn0036565,	CG5235,	1	.
CG4244-RB	ACGCTCCACTGTAAATAGTTTACTCGACCGAATTCGAATTGTTGACGAGCTGAGTTTGGTGTACTGGCA	69	+	chr2L	2043883	2043952	2043883..2043952	CG4244-RC,CG4244-RB,CG4244-RA,	FBgn0003557,	Su(dx),Su(dx),Su(dx),	1	.
CG30047-RA	TGTCCATATGGTTCGCCATAATCCTGGTCCTTCATGTGCTGGGAATGATCCTCAGTCTCGGGCTGC	66	+	chr2R	8241117	8241183	8241117..8241183	CG30047-RA,	FBgn0050047,	CG30047,	1	.
CG32203-RA	CAAGTGCGCGGTGTTATGGTTCCATTCAAGAACAGCGATATGGGAATGCTGGTATTACTGCCAAGGCCA	69	-	chr3L	19122039	19122108	19122039..19122108	CG32203-RB,	FBgn0052203,	Spn75F,	1	.
CG18542-RA	GTTTAGCCAATATATAGTAAGCTAATACTCCACAAACATTCCTGCATGTCGACAGACTTTAGCCGTTGT	69	.	.	.	.	.	CG18542-RA,CG32939-RA,	FBgn0037731,FBgn0052939,	CG18542,CG32939,	2	.
CG13443-RA	GAGCCGCTTAAGGTGAAGCTGACACTGCCAGAGCTGACCGAGAACAATGCAGAAGAAACAGAAGTCCCT	69	+	chr2R	16661853	16661922	16661853..16661922	CG13443-RA,	FBgn0034548,	CG13443,	1	.
CG11783-RA	GGAGATGTCCTACGGCACTCAGTCTACGTACGGTGGATGCAATTCGGCTGCAAACAATAGCCAGCC	66	+	chr3R	20852714	20852780	20852714..20852780	CG11783-RA,	FBgn0015240,	Hr96,	1	.
CG5397-RA	TCCCCTGCTGACTGGAGTCACCAAGCACGAGACAGCAAATTCCGTCACTGTGGAAACGATAGAAAAGGT	69	+	chr2L	1241247	1241316	1241247..1241316	CG5397-RA,	FBgn0031327,	CG5397,	1	.
CG14741-RA	GGTCCTGTTCCTGATTCCTTATGGCGTCTACAAGGATGGCGTTTCGGCAAACGGATTTGTTGTGAGCGA	69	-	chr3R	7896279	7896348	7896279..7896348	CG14741-RC,CG14741-RD,CG14741-RE,CG14741-RB,	FBgn0037989,	CG14741,	1	.
CG2988-RA	AGAGACCCTTTCTCTCCATCCACACTTCTCTCTCAAGATCCGTGCCAAATCCTTGCGAAGTTTCGAGGT	69	+	chr3R	9729862	9729931	9729862..9729931	CG2988-RA,	FBgn0000576,	ems,	1	.
CG10635-RA	GCACGAACAAAGTGTTCCAGAACCACGATGACGTGCACATCTCCTTCGAGGATCAGCAGCGGATC	65	-	chr3L	5360832	5361022	5360832..5360874,5360999..5361022	CG10635-RA,	FBgn0035603,	CG10635,	1	.
CG32677-RA	TTGAACCGCGACATTAGTCAGAGAGTACAGCAGCTATAGTAACAGAACCCCCATATATGCTTACC	65	+	chrX	10603627	10603692	10603627..10603692	CG32677-RA,	FBgn0052677,	X11Lbeta,	1	.
CG4196-RB	ACGGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCAAACTGATCTGCGCAAGC	69	+	chr3R	11025352	11025421	11025352..11025421	CG42542-RB,CG42542-RC,CG42542-RE,CG42542-RD,CG42542-RF,	FBgn0260659,	CG42542,	1	.
CG32638-RA	TTGCCCCCGGCTAGCTAATAGTTGTTGACATCACTCGTTATTCGCCGTTCATTGTTGACGCCCCC	65	-	chrX	13022721	13022786	13022721..13022786	CG32638-RB,	FBgn0052638,	CG32638,	1	.
CG4707-RA	GCCGGACATAGAGCCTGAGGAACGTTACGCTGAGATTCCCAAGCGGGTTGTGGTGAAACCTAAGAAGTA	69	-	chr2R	20493483	20493552	20493483..20493552	CG4707-RA,	FBgn0035036,	CG4707,	1	.
CG14362-RA	ACGGACTCGAACCAAATAATGTTCCAAGACTTCTGCAAAGCATTCGCAGTCTTCGACATGACCGAAATG	69	-	chr3R	9680433	9680502	9680433..9680502	CG14362-RA,	FBgn0038186,	CG14362,	1	.
CG7735-RA	CAGGTGTTTCCATTAAGGCAATCGACATGTCCGGTGCGACGCGATACAGGAATCTGTGGGAGCAC	65	+	chr2R	15331957	15332022	15331957..15332022	CG7735-RA,	FBgn0034446,	CG7735,	1	.
CG2980-RA	CCTCAAGGCCAAGGACTACGGAAAACCCTTCTGTTGGCTGCAAAGTATGTGCTCGATTGCAACCGTCAA	69	+	chr2R	19843023	19843092	19843023..19843092	CG2980-RA,	FBgn0034939,	thoc5,	1	.
CG13561-RA	GGACTACGGACTCTTCACCACCTTCACTTTCCACCGATCGGAGTTGGCCCAGGTTAAGGTGTACTTCAC	69	-	chr2R	19691856	19691925	19691856..19691925	CG13561-RA,	FBgn0034906,	CG13561,	1	.
CG2915-RA	TCAAAGCGGAGAACGGTAGGGATTACGTGAGTGGTAGTCTGTTTGAGACCATCTATCCGTCGAGCG	66	-	chr2R	3845985	3846051	3845985..3846051	CG2915-RB,CG2915-RA,	FBgn0033241,	CG2915,	1	.
CG7435-RA	GGCCAGAAGTCTCTGCGATCCTACTGGAGAAACTACTTCGAGTCCACTGATGGTCTGGTCTGGGTGGT	68	+	chr3R	4167163	4167231	4167163..4167231	CG7435-RA,	FBgn0004908,	Arf84F,	1	.
CG7048-RA	CGCCAAGTCCGAGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAGCAGGAGTT	69	+	chr3R	18313038	18313107	18313038..18313107	CG7048-RA,CG7048-RB,	FBgn0038976,	CG7048,	1	.
CG13837-RA	TGGATGGTCATTACTACGACGAAAAATTGGAACGCTGTTTGGATCGAAAGTTGGTGTCGAGATGCCGG	68	+	chr3R	18869889	18869957	18869889..18869957	CG13837-RA,	FBgn0039042,	CG13837,	1	.
CG14417-RA	GGCGACAAGTACCTACGTCATTCCGATGTCTTGGAACGATCTGATTGGGACGTTCAATTTCCCAGAGCC	69	-	chrX	2770401	2770470	2770401..2770470	CG14417-RA,	FBgn0040353,	CG14417,	1	.
CG11089-RA	AAACACCCTGTTAATCAAACCCCATCAAACTGCCTTATGACCATTCCAAGCTCAATAAAACCACT	65	+	chr3R	20707115	20707180	20707115..20707180	CG11089-RA,CG11089-RB,CG11089-RC,CG11089-RD,CG11089-RE,CG31381-RC,CG31381-RD,	FBgn0039241,FBgn0043799,	CG11089,CG31381,	2	.
CG17579-RA	CGCTACAGTGAACCACCAGAGCCATGCCTACTATAGTTGGGAGTCCACTGTTTGTCTGTGGGAGGTGG	68	+	chr2R	8688479	8688547	8688479..8688547	CG17579-RA,CG17579-RB,	FBgn0003326,	sca,	1	.
CR32887-RA	CATGATGATTTTATTCGTACCGCCCCAGTCTGAAGAGACGTGTTGATTGGTTATTTATACTGATA	65	+	chr2R	13586716	13586781	13586716..13586781	CR32887-RA,	FBgn0063381,	snoRNA:Me28S-G3081a,	1	.
CG12708-RA	TTCTTAAAATAAATCCGCGAACCATTTATTTTATTTTTTTGCTGTTGGAAATAAATATCAGTGCCGAA	68	+	chrX	15569631	15569699	15569631..15569699	CG12708-RA,CG12708-RB,	FBgn0030666,	CG12708,	1	.
CG31757-RA	ACGGCTCACTGACGATTATCCGACGCACCAATAGCCGCAACTTTACCCAATTCGACGGCCAACTG	65	-	chr2L	11835583	11835648	11835583..11835648	CG42325-RB,CG42325-RE,CG42325-RD,CG42325-RF,CG42325-RG,CG42325-RH,	FBgn0259225,	Pde1c,	1	.
CG4230-RA	GCGCGTGACACGAGCTCATCACTTCAAATTTTCAGTTGTCAGCTGTGCAGTTGTCAGTTTTTCGACGGT	69	+	chr2L	5096380	5096449	5096380..5096449	CG4230-RA,	FBgn0031683,	CG4230,	1	.
CG11140-RB	CGGCATGGGCAGATATCATGGAAAGTACGGCTTCGAGACCTTCACGCACAAGAAATCTTGCCTGGG	66	-	chr2R	3355231	3355297	3355231..3355297	CG11140-RI,CG11140-RE,CG11140-RJ,CG11140-RK,CG11140-RL,CG11140-RM,CG11140-RN,CG11140-RO,CG11140-RQ,	FBgn0010548,	Aldh-III,	1	.
CG5609-RA	CGCATGGCTCCTAGCTTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGTGGATATACGGGA	69	+	chr3R	16699935	16700004	16699935..16700004	CG5609-RA,	FBgn0038838,	TotB,	1	.
CG14857-RA	TGAAGCCTTCAGGAGGAACTGCATCGTCAAGAGGAAGCTTTCAAACCAACCGGAACAAACGGCAGGAAT	69	+	chr3R	10628761	10628830	10628761..10628830	CG14857-RA,	FBgn0038262,	CG14857,	1	.
CG18559-RA	TCATGCCCTGACCGTGATGCTGGATGGCTACGATACTTCGGGAACAGCTCTTCTCCATGCTCTGTACTA	69	-	chr2L	2571831	2571900	2571831..2571900	CG18559-RA,	FBgn0041337,	Cyp309a2,	1	.
CG15333-RA	ACAGCCACAGTATAATGGTTCCATCACACCACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGG	68	-	chrX	7914294	7914362	7914294..7914362	CG15333-RA,	FBgn0029989,	CG15333,	1	.
CG31323-RA	CGCAAGTCCCGCAGACCTGGAGTCACTGATGAGGCACCTGCTCAGTCTGGTCGTGTTCCTATTGG	65	+	chr3R	22010255	22010320	22010255..22010320	CG31323-RA,CG31323-RB,CG31323-RC,	FBgn0051323,	CG31323,	1	.
CG10104-RA	GGGTCCCATCTTCCTGGCAGCAAAATTCGACGGCATCTTTGGATTGGCCTATCGCAGCATCTCTATG	67	+	chr2R	10278846	10278913	10278846..10278913	CG10104-RA,	FBgn0033933,	CG10104,	1	.
CG11539-RA	GATGAGCAACGAGACCCTGAGGGAGTTGACCGCATCCGAGGAACTGACCTTAGAAGAGGAGCACG	65	-	chr3R	27441571	27441636	27441571..27441636	CG11539-RA,	FBgn0039859,	CG11539,	1	.
CG30021-RA	CCATGTGGGTGCAGTAGATCGGTTGCCAAATGTGGACAAGCATTTCATGCAGTTTGTTGATGAACACCA	69	-	chr2R	7114475	7114544	7114475..7114544	CG30021-RA,CG30021-RB,CG30021-RC,	FBgn0050021,	metro,	1	.
CG14470-RA	TCCCGCGTCCCGAATTTGATGGATTGGTCCGATACGAGATTGATGTGCAGCAAACGATTGCATTTGCCA	69	+	chr2R	1818418	1818487	1818418..1818487	CG43366-RB,	FBgn0263109,	CG43366,	1	.
CG2503-RA	GGTTACAACGTCAAGAAGTCGCTTCGGGAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAG	67	+	chr3R	601950	602017	601950..602017	CG2503-RA,	FBgn0010750,	atms,	1	.
CG14644-RA	AACTTGTGCGGAGAAAACGTTGTTTGTGCTGTCCATGATTCTGATAGTCCTTTGCCTGCCGTGGTCCCT	69	-	chr3R	78451	78520	78451..78520	CG14644-RA,	FBgn0250821,	CG14644,	1	.
CG14628-RA	TGAGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGATGGCCCGGGAGACATGCA	69	+	chrX	1040042	1040111	1040042..1040111	CG14628-RA,	FBgn0040365,	CG14628,	1	.
CG30388-RA	GCACGGCGATGTAGTGAATCTCATCAAGGAGTCTGGTCTTCATGTGCGTCTCACTATCGGCGTTCCG	67	-	chr2R	17017649	17017716	17017649..17017716	CG30388-RA,	FBgn0034590,	Magi,	1	.
CG5222-RA	TCCTTCGGGCGTTGTCTATGACCTCTTTGAGTGCCTCACCCAGAATTTGGAAAACGCTGGCCTAAACAA	69	-	chr3L	16097637	16097706	16097637..16097706	CG5222-RA,	FBgn0036570,	CG5222,	1	.
CG3821-RA	GTTCCGCGATATTCTCACTGAGCAGGGCTTCACAGAGATTCACACGCCGAAGATCATTTCAGCGGCC	67	+	chr2R	8769309	8769376	8769309..8769376	CG3821-RA,	FBgn0002069,	Aats-asp,	1	.
CG3552-RA	AGGAGGTAAAGCGACCGGTCCGTAGGCGAACCATGAGCAAGGTTAAGTACGAGACGAGTCTGGAG	65	+	chr3L	9451254	9451319	9451254..9451319	CG3552-RA,CG3552-RD,	FBgn0035999,	CG3552,	1	.
CG6534-RA	GCCTTCACGTACGAACAACTAGTTTCCCTGGAGAACAAGTTCAAGACCACCAGATATCTCAGCGTCTGC	69	-	chr3R	17375228	17375297	17375228..17375297	CG6534-RA,	FBgn0002941,	slou,	1	.
CG14575-RA	GCTGGAAAACAGCCACACAGTTTGCGAGGAGCCCAAAGTTGAGAACGATATTTGGATCGAGAACGAGGA	69	-	chr3L	21552293	21552362	21552293..21552362	CG14575-RB,	FBgn0037100,	capaR,	1	.
CG10747-RA	GGAGATTTTTGAGCCACTTCTGGAGATTCGCCAGTTCGTGGACACCCATCCAGAGGAGGTGGTAATCCT	69	-	chr2L	20090641	20090710	20090641..20090710	CG10747-RA,	FBgn0032845,	CG10747,	1	.
CG12042-RA	GCCGGAGAACATTTTCACGGAACCCTTGAACTTGCGGAATGTGACAACCATCACCCAGCGACATAGC	67	-	chr2R	3555664	3555731	3555664..3555731	CG12042-RA,	FBgn0033206,	CG12042,	1	.
CG3701-RA	CTAGCGGTGGATACCTACTCGTTGAGGTTCCTGGGCATGATTGCTACCTACAATCCGCCGCGAAG	65	-	chr2R	18362558	18362623	18362558..18362623	CG3701-RA,CG3701-RB,	FBgn0034732,	CG3701,	1	.
CG13604-RA	AGTTTCTCTGCAAGCATTGAGACTGAGACTCAACTCGATTGGGACGGACCTGGAGGTGAATCACACGCT	69	-	chr3R	19815108	19815177	19815108..19815177	CG13604-RA,CG13604-RB,CG13604-RC,CG13604-RD,	FBgn0039137,	CG13604,	1	.
CG7479-RA	GGAAACCAAAGAGCCCGTGGTCATGACCTGGGAAAAGATGTCTAAGTCAAAGCTGAATGGGGTGGAGCC	69	+	chr3L	4827722	4827791	4827722..4827791	CG7479-RA,	FBgn0027085,	Aats-leu,	1	.
CG3227-RA	CCCGCGGCAGAACATAAAACTACCAGCCAAACCCCAAGTCAAAGCCCGTAATGGCAGTTTTACCGATCT	69	-	chr2L	2575856	2575925	2575856..2575925	CG3227-RA,	FBgn0031434,	CG3227,	1	.
CG1430-RA	GTGCGCGATGTGTTGAAACGCTATCGCAGTGGCAAGATCCCTAAGGCCTTCAAGATCATACCCAAGCTG	69	+	chrX	7796656	7796725	7796656..7796725	CG1430-RA,	FBgn0010292,	bys,	1	.
CG31326-RA	GCCGGAGATACCAAGTCCCGTCCCACAACGACCGACACCAAATCCTAGTCGATCTAATGCTCCTCAG	67	-	chr3R	10044946	10045013	10044946..10045013	CG31326-RA,	FBgn0051326,	CG31326,	1	.
CG14589-RA	GTGCGTGACCTTCTTGTGGATATTTCTGTGCATCTACGTCCTGTCCAAGCTAACCCAACTCGTGGAGCT	69	+	chr2R	2025017	2025086	2025017..2025086	CG14589-RA,CG14589-RB,	FBgn0033063,	CG14589,	1	.
CG5686-RA	CCCAGTTCGAATTGCCTGCCAATGAAAGTGGAGAAACTCAAGCTATCCGACTATCAGACAGCACCGCCA	69	-	chr2L	10243518	10243587	10243518..10243587	CG5686-RA,CG5686-RB,	FBgn0024248,	chico,	1	.
CG14931-RA	CGAGAGCGAGTCTGATTTTTTGACTTCGCATCCCAGTGCTTTGCACAACTCCACGATGATCATGTCGCC	69	.	.	.	.	.	CG14931-RB,	FBgn0032374,	CG14931,	1	.
CG3478-RA	CATGGCGATGAGGTCCTGGTCAGTGTGCTGCCAGCATATGTCGTGTCCACTGACAATTTGCACGAAATT	69	-	chr2L	14379662	14379731	14379662..14379731	CG3478-RA,	FBgn0020258,	ppk,	1	.
CG30280-RA	ACGGATACAGGGTAACCCAAATGATGATAAGACCCAAGTGCCGAATGATACCAGTGACTCAGCGGTGA	68	+	chr2R	18002078	18002146	18002078..18002146	CG30280-RB,	FBgn0050280,	CG30280,	1	.
CG1838-RA	TCACCAGCTTTGGATGGCATTTCGTTGTAGCACCAACGTCCTTTGACGCATACTTCTGCAGTGGTGACT	69	-	chr4	712798	712867	712798..712867	CG1838-RA,CG1838-RB,CG1838-RC,CG1838-RD,	FBgn0026199,	myoglianin,	1	.
CG7563-RA	GCGAACTGGAAAACCGTCCCCAGGGTCTGAACTTTTTCAGATACAAGTCTTCTGTGGGAAGATCGCCGC	69	+	chr2R	15315778	15315847	15315778..15315847	CG7563-RB,CG7563-RA,CG7563-RC,	FBgn0012051,	CalpA,	1	.
CG32069-RA	TGGCCAAAATTCCCCTGATATTCCTTAACATAATTGCGATTATATTTAAACTATTACTTGGTTGA	65	-	chr3L	11055272	11055399	11055272..11055328,11055390..11055399	CG32069-RA,	FBgn0052069,	CG32069,	1	.
CG14488-RA	GCCACCGAAAAACGAAGAGACCGAGGAAGTTCTGGTCAACAAGTATCCACTTTACTGCACTACTGCCGT	69	-	chr2R	13654871	13654940	13654871..13654940	CG14488-RA,	FBgn0034278,	CG14488,	1	.
CG1082-RA	CCACCTCGGACCCAAATGCTCCACTCACTAAATCTCTGGTGGATTGGAAGCCCGTAACTCGATTCGGAA	69	-	chr3R	3362586	3362655	3362586..3362655	CG1082-RA,	FBgn0015572,	alpha-Est4,	1	.
CG14792-RD	GTCCACTAACCATATGCCTGTCTCGTTCACAGGTCCGTAACTCTTTCCACGTTAACATGTCGGGAGGCT	69	-	chrX	1376911	1376980	1376911..1376980	CG14792-RD,	FBgn0003517,	sta,	1	.
CG14332-RA	CTGCTGGAGCTCATGGACGTCCAAATGTAGGTGGATCTGCCCATGGAAATTCCTACCAGAATCGCCAA	68	-	chr3R	13247544	13247612	13247544..13247612	CG14332-RA,	FBgn0038509,	CG14332,	1	.
CG14920-RA	GGCACTCCGTTGTGCAGAACCTATCACCTACCAGCCATGTTGATTATCCTGCTCGTCCTCATCCAGAAC	69	-	chr2L	11085032	11085101	11085032..11085101	CG14920-RB,	FBgn0032337,	Ast-CC,	1	.
CG33334-RA	CATCGAGAGCATCAGTCTGCCGGATGTGGTTGTCGAGTCAACGACCGTCAATGCATCCACATCAGG	66	+	chr3R	17951810	17951876	17951810..17951876	CG42390-RB,CG42390-RD,	FBgn0259736,	CG42390,	1	.
CG32251-RA	CGACGAGGAAAGTGACGCAGAGCCAGTAGAGGAAATTCCGGAAACCTTTGTAGACTACGATTCCGAGGA	69	+	chr3L	4317221	4317290	4317221..4317290	CG32251-RA,	FBgn0052251,	CG32251,	1	.
CG32221-RA	GCACCAGCAAGGATCTAATAAAAGCCATTGGGATACACCTTCCGCGGGTCAACAGTCTGAGCCTGG	66	+	chr3L	19828303	19828369	19828303..19828369	CG32221-RB,	FBgn0052221,	CG32221,	1	.
CG17855-RA	GGAGAAAGTGAAACGTTGTCGTGCTTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGT	69	+	chr2L	9540957	9541026	9540957..9541026	CG17855-RA,	FBgn0032124,	CG17855,	1	.
CG14778-RA	GCTCCGGTTCAGCATGTACGGTGGTCTGTTTGTTGCTCCTACCCTCTACGGATGGGTCAAGATTTCCA	68	+	chrX	1364069	1364196	1364069..1364130,1364189..1364196	CG14778-RA,	FBgn0029580,	CG14778,	1	.
CG3328-RA	TCATCCCATTCGCAAATTCAATCCTGGAACCGTCTACACCCACGTTTACAAGACCGTATCGCCCCCA	67	+	chr2R	20059376	20059443	20059376..20059443	CG3328-RA,	FBgn0034985,	CG3328,	1	.
CG17603-RB	AGTTTGATGAAGCCTGGGGCAATGATGATTACAACTTTGACCGTGGCAGTAGGGCCAGTTCACCCG	66	+	chr3R	2478754	2478820	2478754..2478820	CG17603-RA,CG17603-RB,CG17603-RC,CG17603-RD,CG17603-RE,	FBgn0010355,	Taf1,	1	.
CG3638-RB	CGGTGGAAAAGCGAAGACACAGTCGGCGAAAGATGACTAGGTGCTCCTGAACATTTCCAAACGAGTTTT	69	-	chrX	1112053	1112122	1112053..1112122	CG3638-RE,CG3638-RB,CG3638-RA,CG3638-RF,	FBgn0261444,	CG3638,	1	.
CG31461-RA	TTGATGGGGGAAATCCTTAAAGTTCTCACACTGAAAGTATTGCTAAAACAGAAGCCTGAAGTCCG	65	+	chr3R	11546519	11546584	11546519..11546584				0	no match
CG30054-RB	TGGGTACGTGGAGTGGGATGTATTGGGATGTATCAAGGATACAATGTGCGTATATCCACAGGCGCATGC	69	+	chr2R	8511345	8511414	8511345..8511414	CG30054-RF,	FBgn0050054,	CG30054,	1	.
CG14968-RE	GCCAGCATCAATCACTGGAGCTATCCCATCGACACGATCTCGTATGGCGTTCAGGACCTGGTCTACACA	69	-	chr3L	3299804	3299873	3299804..3299873	CG14968-RB,CG14968-RC,CG14968-RD,CG14968-RE,CG14968-RA,	FBgn0035431,	CG14968,	1	.
CG6963-RB	TGGACATCCGGAAGAGTTTGCGACATATTTGCGTTATGTACGGCGGTTAGATTTTTTCGAAACTCCCGA	69	+	chr3R	12122907	12122976	12122907..12122976	CG6963-RI,CG6963-RB,CG6963-RA,CG6963-RD,CG6963-RE,CG6963-RC,CG6963-RF,CG6963-RG,CG6963-RH,CG6963-RJ,CG6963-RK,	FBgn0250823,	gish,	1	.
CG10737-RB	GAACACACACATGTGCAATAAGTTCTTTGGATTCGTTTTTAACCCATTTCTCCGTGTCAACGTGC	65	+	chr2R	15065538	15065603	15065538..15065603	CG10737-RE,CG10737-RS,CG10737-RO,	FBgn0034420,	CG10737,	1	.
CG4719-RA	TTGGGTTAATCAAAAGTGAAGCACAGTTTTTGAGTGATTTTAATTCGAAATACGGAAAATGCGATTCGA	69	-	chr3R	21478963	21479032	21478963..21479032	CG4719-RA,	FBgn0027508,	tankyrase,	1	.
CG1089-RA	GGCACGGCTTTAATCGCACCTTTAACGCCAGACTTACCTATGCAAAAGCACCCACATATTACTATCGCT	69	-	chr3R	3360347	3360416	3360347..3360416	CG1089-RB,CG1089-RA,	FBgn0261393,	alpha-Est5,	1	.
CG1079-RA	GCAAGTGGTATGTGATGCATAGCTTCTACCAGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCA	69	+	chr3L	3894013	3894082	3894013..3894082	CG1079-RA,	FBgn0026592,	Fie,	1	.
CG7332-RA	GGCATCTGTGAGCAGAGCGACATCGGCTTTATAACACTGATGGAGGAAATGCGTTACTGCACGGTGGG	68	+	chrX	18780646	18780714	18780646..18780714	CG7332-RA,	FBgn0030973,	CG7332,	1	.
CG1468-RA	AGGTTGACCCCTATGGCACTTACGATAGCCAAATCCACTCAATTGGGGCTAATGATGACGGCAACTGGA	69	+	chrX	9773146	9773215	9773146..9773215	CG1468-RA,	FBgn0030157,	CG1468,	1	.
CG14960-RA	TCGGCTATGGTTGCCTTTCTGGTCGCCATTGGTATGAAGTCTCTGTTCCTGCTCAAGGTCTTAGTGGTT	69	+	chr3L	3275565	3275634	3275565..3275634	CG14960-RA,	FBgn0035428,	CG14960,	1	.
CG11629-RA	GAAACTCCCCGAAGAACCCATACAAGCAGCTGAACAATGACTCGGTGGAGGAGAAACGCCTGTCG	65	-	chr2L	21898087	21898152	21898087..21898152	CG11629-RA,	FBgn0032965,	CG11629,	1	.
CG13499-RD	GCGCTCAGTTCGTCTGCAGAAGTCAGCAGTAGCGGTTCGTAGTGCTCCGTAATTTCAATGTGTACAGAG	69	-	chr2R	17926873	17926942	17926873..17926942				0	no match
CG3027-RA	GCCCACAAGTGCGAAAGATATTGCCGAACAGAATGGATTCGACATCAAGGGCTATCGCTTCACGGCG	67	-	chr3R	3574852	3574919	3574852..3574919	CG3027-RA,	FBgn0037513,	pyd3,	1	.
CG4157-RA	TCGCTTTACCCTACAACAATTGCCATCTCTAAAAAAAAGCGAAAATCATCTTGGGAATTTGCAGAAAAC	69	+	chr3L	16576101	16576170	16576101..16576170	CG4157-RA,	FBgn0028693,	Rpn12,	1	.
CG3149-RA	CCAAATGGAAAGCATTTCAACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTG	66	-	chrX	5588095	5588161	5588095..5588161	CG3149-RA,	FBgn0027564,	CG3149,	1	.
CG7529-RA	GTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATATGTTCAAGAGAGCGATTGTGCAGTCAGGTTCGA	69	+	chr3L	21495858	21495927	21495858..21495927	CG7529-RA,	FBgn0037090,	Est-Q,	1	.
CG1745-RB	TCTTTAGAAAAACCAACGAACGAAGACAGGGTTGAGAAAGTAGAGGACGAGGTCGAGCATGCCGA	65	+	chrX	11351259	11351324	11351259..11351324	CG1745-RB,	FBgn0030301,	HP5,	1	.
CG12015-RA	GGATTAATCGAGCGATCACAGCCATGGCCACGATGCGCATACCCAAACAAAAGGTGATCCTGTGCG	66	+	chr3L	690596	690662	690596..690662	CG12015-RA,	FBgn0035155,	RabX6,	1	.
CG33497-RA	AGCTCTGGTCGCTAAAGGACACAAAGCCGCTGTACTCCTTTGAGGACAACTCCGACTACGTGATGGA	67	.	.	.	.	.	CG18000-RE,CG18000-RK,CG18000-RJ,CG18000-RC,CG18000-RA,CG18000-RH,CG18000-RI,CG18000-RM,CG18000-RB,CG18000-RL,CG18000-RG,CG18000-RF,CG18000-RD,CG33499-RA,CG33497-RA,	FBgn0003654,FBgn0053499,FBgn0053497,	sw,Sdic4,Sdic2,	3	.
CG31329-RA	GGCCAACACTTGTCACGTCCGCATTACCCTAGACCCGGTTGAAAACGGACCAGTAGTGCTTCGAAT	66	-	chr3R	2974542	2974608	2974542..2974608	CG33546-RB,	FBgn0250732,	gfzf,	1	.
CG17227-RB	TTGGGCGTTTGTGGAAGACAGTGACCAAAGTGCACTCTGGCTTGGATGATGCTACCAACGCAGAG	65	-	chr3R	8225763	8225828	8225763..8225828	CG17227-RA,	FBgn0038035,	lig3,	1	.
CG10918-RA	ACCGATAGCTCCACCGATAGCTCTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCAC	65	-	chrX	21299743	21299808	21299743..21299808	CG10918-RA,	FBgn0031178,	CG10918,	1	.
CG31633-RA	AGTGCATTCGCTTCACGGTGACGGAACTTACACTCCAATACCTAGCCATGGATCACCTGGAGCGG	65	-	chr2L	6655906	6655971	6655906..6655971	CG31633-RA,	FBgn0051633,	CG31633,	1	.
CG1453-RC	GCAAGCGTTAGTTCATTCCCGCATTCGACCCGTTCATCCACAATCACCAACAATCATCCACCACACCCA	69	-	chrX	11024954	11025023	11024954..11025023	CG1453-RA,CG1453-RE,CG1453-RD,CG1453-RB,CG1453-RC,	FBgn0030268,	Klp10A,	1	.
CG6483-RA	ACCAGCGTCGCTAACACTCTGCAGTACGAAGTCTTCGAGGTTGTGTCCGTCTCTCAATGCCAGAACACT	69	+	chr3L	6044460	6044529	6044460..6044529	CG6483-RA,	FBgn0035665,	Jon65Aiii,	1	.
CG1597-RA	GGCCGAGCAATTCTAGATCTCGCCTACACGGTTTTCAGCCTGCCAAAACTGCTGTGAGTTCCTCAACG	68	-	chrX	11239247	11239315	11239247..11239315	CG1597-RC,CG1597-RB,	FBgn0030289,	CG1597,	1	.
CG17259-RA	GTACGCCCGTGACTACGTTCCCCTGTACACGCCCTTCTTCATGCGAAAGGAGGTAATGCAGGAGG	65	-	chr2L	3036438	3036503	3036438..3036503	CG17259-RA,	FBgn0031497,	CG17259,	1	.
CG4822-RA	ACCCGGCTGACTTCATTATCGAAGTTGCTTGCCTTGAGTATGGCGGGTCCTATCACGAGCCAATGGTAG	69	-	chr2L	118581	118650	118581..118650	CG4822-RA,CG4822-RC,CG4822-RD,CG4822-RB,CG4822-RE,CG4822-RF,CG4822-RG,CG4822-RH,	FBgn0031220,	CG4822,	1	.
CG13326-RA	AGAGCATCCTTTCCAAGTGTCCCACTATGAAGTTCGCCATTCGCAACTGCCTCACCTTCACGGACATC	68	-	chr2R	9017944	9018012	9017944..9018012	CG13326-RA,	FBgn0033794,	CG13326,	1	.
CG32301-RA	CCACCATCGAGAACTACGAGGCGGATAAGTCGGGTCTGCGAGCTCTTCACGAGATGATCTGCTACTTCG	69	+	chr3L	2247598	2247667	2247598..2247667	CG32301-RB,CG32301-RC,	FBgn0052301,	CG32301,	1	.
CG4586-RA	GGCTTGCAATCATTTGTGGTGAGGATCAGGGACGAGAGGACACACGAACCGTTGACTGGAGTCGATG	67	+	chrX	6864704	6864771	6864704..6864771	CG4586-RA,	FBgn0029924,	CG4586,	1	.
CG5358-RA	GGATCAGCGTGAACGGAATAGGCGAAGGCATGGACATCACTCATGGACTTATGCATCCGCACTAGGG	67	-	chr3R	5809632	5809699	5809632..5809699	CG5358-RA,	FBgn0037770,	Art4,	1	.
CG6465-RA	TGTGGTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGGCTCTAGATGTGGACTTTGAGGAGTT	69	-	chr3R	6501825	6501894	6501825..6501894	CG6465-RA,	FBgn0037818,	CG6465,	1	.
CG5334-RA	TCTTCTCGGCAAAATCTTCATAAAATCTGTCGCTATCGATTGCGTGGAAATTGTCGTTTCGATGATTTA	69	+	chrX	14669397	14669466	14669397..14669466	CG5334-RA,	FBgn0030577,	CG5334,	1	.
CG11307-RA	TTCGTCACCATATCATCCATGGACCAGACCTCCAGTACCGACTTGGATCAAAAGCGGCTCAGGGA	65	+	chr3L	21611845	21611910	21611845..21611910	CG11307-RA,CG11307-RB,CG11307-RC,	FBgn0037106,	CG11307,	1	.
CG7895-RA	CGCCTCATGGAGACCGCTAGCAACTCGTCCTCCCTAAGGAGCATCTACGGTTCAGATGAGGGCGC	65	+	chr3R	17206593	17206658	17206593..17206658	CG7895-RA,	FBgn0004110,	tin,	1	.
CG17911-RA	AGGACATACTTCGGCATCGGGACAGATCTCTACGGATCTTTTGCTTTGTGCTGTTGCTACCCAGGTGGT	69	-	chr3R	4338103	4338172	4338103..4338172	CG17911-RA,	FBgn0037591,	Or85c,	1	.
CG31611-RA	GAACACGCCAAGAGGAAGACAGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGGCCG	65	.	.	.	.	.	CR33867-RA,CG33909-RA,CG33883-RA,CG33887-RA,CG33885-RA,CG31611-RA,CG33895-RA,CG33873-RA,CG33891-RA,CG33889-RA,CG33875-RA,CG33893-RA,CG33871-RA,CG33901-RA,CG33899-RA,CG33907-RA,CG33903-RA,CG33897-RA,CG33905-RA,	FBgn0053867,FBgn0053909,FBgn0053883,FBgn0053887,FBgn0053885,FBgn0051611,FBgn0053895,FBgn0053873,FBgn0053891,FBgn0053889,FBgn0053875,FBgn0053893,FBgn0053871,FBgn0053901,FBgn0053899,FBgn0053907,FBgn0053903,FBgn0053897,FBgn0053905,	His-Psi:CR33867,His4:CG33909,His4:CG33883,His4:CG33887,His4:CG33885,His4:CG31611,His4:CG33895,His4:CG33873,His4:CG33891,His4:CG33889,His4:CG33875,His4:CG33893,His4:CG33871,His4:CG33901,His4:CG33899,His4:CG33907,His4:CG33903,His4:CG33897,His4:CG33905,	19	.
CG1086-RB	ACTACACGTTCTTGCCGTTCAGCGTATTCCTGGCCATCTTCTGGATATTCACGTACAAGAAGGTGCCCG	69	+	chr3L	984149	984218	984149..984218	CG1086-RC,CG1086-RB,CG1086-RD,CG1086-RE,CG1086-RJ,CG1086-RK,CG1086-RL,CG1086-RM,	FBgn0261914,	Glut1,	1	.
CG10788-RB	TGACGCCTTTGAAAATGTAGTTTTTCTTTTTGGTTTTCTTTTTTCCGTTCAAAACACTTAAGGCAAATA	69	-	chrX	3135542	3135611	3135542..3135611	CG10788-RB,	FBgn0010295,	ng3,	1	.
CG6725-RA	GTCTGACGCCTGGAGAGAGATCCCACATGCACGATGCTTTAGATCAGTTGAAGAGCTGTCGAGGACGC	68	-	chr3R	12137348	12137416	12137348..12137416	CG6725-RA,	FBgn0040271,	Sulf1,	1	.
CG18313-RA	AGCGGAATCCATGAGTTGACCATCGAGTTCACCGATTCCAGTGAGGTTGTGGTAGTCATGCCCAAGGTT	69	+	chrX	14274692	14274761	14274692..14274761	CG18313-RA,	FBgn0030566,	betaNACtes4,	1	.
CG6975-RA	CGTCGCTAGTCTACCAAAGTGTGCAGAAAAAGCATCCGTACGCATCGAATTGGCTAGAACGATTGCGCA	69	+	chr3L	20131708	20131777	20131708..20131777	CG6975-RA,	FBgn0005198,	gig,	1	.
CG11127-RA	TTCCCTTCCAGCAGTCCAATGGCACACGTTCGCGAATCCATCAACTATTACTCACGGACTGCTTGC	66	+	chr2R	3351896	3351962	3351896..3351962	CG11127-RA,	FBgn0033178,	CG11127,	1	.
CG32345-RA	GGTGCAACAATACAACAACTGAGGAGAAGACTGCGAGAACAACAAAAAAGAATTCTTTACGAGCCTCGC	69	-	chr3L	622032	622101	622032..622101	CG43337-RA,	FBgn0263042,	CG43337,	1	.
CG17347-RA	CCAAGATTGGCGATAAGAACGTCTTCGAGAGCAAGTGCTATGTGGGCCCCGGTGTCACTGTTTCCAG	67	+	chr2L	19132743	19132810	19132743..19132810	CG17347-RA,	FBgn0086446,	l(2)37Ce,	1	.
CG33180-RB	GATGGACCTGTGGGCTCACGATCCTGCCGTTACGACACCAATTCTCAAATTGTTTGCCGAGCTGG	65	-	chrX	15824660	15824725	15824660..15824725	CG33180-RB,CG33180-RC,CG33180-RE,CG33180-RF,CG33180-RG,	FBgn0053180,	Ranbp16,	1	.
CG5727-RA	AGTGGCGAGAAAATCGGACGTTCCAATCTATCCACCATTTCAAGTGGAACCCCAGCTATCGTGCAGCAA	69	-	chr2L	10210234	10210303	10210234..10210303	CG5727-RA,	FBgn0032193,	CG5727,	1	.
CG11674-RA	AAAACTTTGTGCACAACCACAACATGACCAAGTGCATCAAGGGCTCCGCTTACGGTGACACGTGC	65	-	chrX	14119154	14119219	14119154..14119219	CG11674-RA,	FBgn0030551,	CG11674,	1	.
CG4280-RA	GCGTGCCGAGACAAAGCACCCATTTACTCCTCCTTCCCTCACTTTTACCTAGCGGATCAGTCGTATGTT	69	-	chr2L	449571	449640	449571..449640	CG4280-RA,CG4280-RB,CG4280-RC,	FBgn0015924,	crq,	1	.
CG31136-RA	GCATTGAGTACCATGTGGAGCACGCTATGGACTATGTGCAGACGGCAACTCAGGACACCAAGAAGGC	67	-	chr3R	19929395	19929462	19929395..19929462	CG31136-RA,CG31136-RB,	FBgn0013343,	Syx1A,	1	.
CG17012-RA	GGCAGTACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAACGCATCATCGGCG	68	-	chr2L	2254943	2255011	2254943..2255011	CG17012-RA,	FBgn0031406,	CG17012,	1	.
CG4750-RA	TTGATGCTTTGGTACAGTGTTTGCACAGAAAAAACATTCTGGTCTGGAGAAGCCATCCTCGTAAAGGTT	69	+	chr2R	12424347	12424416	12424347..12424416	CG4750-RA,CG4750-RC,	FBgn0259795,	loopin-1,	1	.
CG2861-RB	ACCCAGGGTACCAAAAGCTCCAAAGGAACCAAAAGTACCCAAGATTCCGAAGAACCCCAGGGTACCG	67	-	chrX	4695354	4695421	4695354..4695421	CG2861-RA,CG2861-RC,	FBgn0029728,	CG2861,	1	.
CG7041-RA	AGCCGGTGGAGAATCTCGACTGTCCAGACCTGATAGCCAACTTCGAGGAGTCGCTGAAGAACAACAAGA	69	+	chrX	8975497	8975566	8975497..8975566	CG7041-RA,CG7041-RB,	FBgn0030082,	HP1b,	1	.
CG31222-RA	AGCGAATGTCCGCAGTCCTGGACCACAGATGAGAACTCTGACAGCGATAGAGACACCCAGCACAG	65	+	chr3R	14773311	14773376	14773311..14773376	CG42613-RH,CG42613-RE,CG42613-RG,	FBgn0261262,	CG42613,	1	.
CG33052-RA	GAGGCTCAGTTCTTGCGGGCCAAGATAGAGCTGCACAATGCATCCGAAAAGAAGGAGCTGCTCAC	65	-	chr3L	17420820	17420885	17420820..17420885	CG33052-RA,	FBgn0053052,	CG33052,	1	.
CG12338-RA	GCTTTCTACGGCGATTACGACACCTACGTTCTTCCCGGATTTGAGACTGTGACCCTGGGAGGATGTCG	68	-	chr2R	6617444	6617512	6617444..6617512	CG12338-RA,	FBgn0033543,	CG12338,	1	.
CG33090-RB	CATGTCCGCCATGGCTACCATTCTGGACCAGCCGAACGATTGCCTGCGCTATCAGGATATTTTGG	65	+	chr2L	14344727	14344792	14344727..14344792	CG33090-RB,	FBgn0028916,	CG33090,	1	.
CG32098-RA	AGACGGTCCGACAAGTAATCGCCTTAAAATGCAATTTGTTTTGTTGCAATCAACGATTTTTGATG	65	-	chr3L	12254405	12254470	12254405..12254470				0	no match
CG6928-RA	CGGTCTGCCCAACGTTTCACTGCCAAAGTTTGAGACCACCATACTGGACAGGAATGGCACTGAGATCAG	69	+	chr3L	11999204	11999273	11999204..11999273	CG6928-RB,CG6928-RA,	FBgn0036240,	CG6928,	1	.
CG3530-RA	GGGGCTATATGGCCAATCACCTGAACGAGTATATCAACCCGCTGTACAAACCAAATGTAGACGAGGCCA	69	-	chr2R	19277858	19277927	19277858..19277927	CG3530-RB,CG3530-RA,CG3530-RC,	FBgn0028497,	CG3530,	1	.
CG18477-RA	AGGAGGTTCCTTACGCAAGTCCAACACTTTCTGCAGGCCCGTATCTTAACCAGTGGAATCAACCGAACT	69	.	.	.	.	.	CG31780-RB,CG18477-RA,	FBgn0051780,FBgn0028864,	CG31780,CG18477,	2	.
CG10711-RA	CACGCGGGACAACTTTACCAGCAATTCTGCCTACTTCAGTAGCCTGGCCCGACAGATTTGCGAAATG	67	-	chr3L	13505257	13505324	13505257..13505324	CG10711-RA,	FBgn0086785,	Vps36,	1	.
CG1124-RA	TCCATGCTAACTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCTTCAAGGG	67	+	chr3R	793592	793659	793592..793659	CG1124-RA,	FBgn0037290,	CG1124,	1	.
CG7619-RA	ACCCGAGGACAACTTGCCGGACTTTGCTAACATGACTGAGGAGGAACAGATTGCCTTCGCTATGCAGAT	69	+	chr3L	21531245	21531314	21531245..21531314	CG7619-RA,	FBgn0015283,	Pros54,	1	.
CG1462-RA	CGAATGACTCCAGACCTCAGAACAGCTCCAACATGTGGATGCCCCTGAAGCATTTTACCGCTGAGGAG	68	+	chr3R	26877730	26877798	26877730..26877798	CG1462-RA,CG1462-RB,	FBgn0016123,	Aph-4,	1	.
CG5596-RB	CAACACCAACAAACTTTTAGCGACAACCATTCTCCATAGATGTTATATTCATCGCTAACTCTCTCTATC	69	-	chr3R	23483513	23483582	23483513..23483582	CG5596-RB,CG5596-RA,	FBgn0002772,	Mlc1,	1	.
CG15056-RA	ACGCGGAGGTCCACATACCCCAATGTTTTCACATTTCGAGGATTTCATACGCCTGATGTCGATCCGGCT	69	+	chrX	18309866	18309935	18309866..18309935	CG15056-RA,	FBgn0030918,	CG15056,	1	.
CG30016-RA	CGGAGCGCAATGTGAGGACACTTTATCCAGCAATTGACTTGATTGTGGATTGCAGTGAGAATCAGAACT	69	-	chr2R	6762535	6762604	6762535..6762604	CG30016-RA,	FBgn0050016,	CG30016,	1	.
CG7604-RA	GCAGAATGCGGATTCGATCCACAATGCCCACAAGGCTGGAATCCCGATAGTCCTCTATTACCCGATCCC	69	-	chr3L	15647773	15647842	15647773..15647842	CG7604-RA,	FBgn0004592,	Eig71Ee,	1	.
CG5826-RA	GCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGATCTCTGCCGACTACGATGTGTTGCTG	68	-	chr3R	13371358	13371426	13371358..13371426	CG5826-RA,	FBgn0038519,	Prx3,	1	.
CR31396-RA	AGAGGTTAAGGCGTTGGACTGCTAATCCAATGTGCTCTGCACGCGTGGGTTCGAATCCCATCCTC	65	.	.	.	.	.	CR31476-RA,CR31162-RA,CR31166-RA,CR31165-RA,CR31396-RA,	FBgn0011971,FBgn0051162,FBgn0051166,FBgn0051165,FBgn0011970,	tRNA:S2b:88A,tRNA:CR31162,tRNA:CR31166,tRNA:CR31165,tRNA:S2b:86A,	5	.
CR30505-RA	CTTTGATTACTTAAGGAAACATTTGCCAGGTTGCAATAGATCGTTGAACAGGTTGAAGAAAAAAC	65	-	chr2R	398035	398100	398035..398100	CR30505-RA,	FBgn0050505,	tRNA:CR30505,	1	.
CG10897-RA	CAAGTTCTTCGAGTCCCGCTGGGGTGAACTGACTGACAAGCACTCCTGATCCTGCACCACTAGCC	65	-	chr2R	7467315	7467380	7467315..7467380	CG10897-RA,CG10897-RB,CG10897-RE,	FBgn0033636,	tou,	1	.
CG17388-RA	TGTACGCATTCTTTGCAGTTGGCGAGAAGGAGGATGAGGAAAACACCGGACTGCTGGAGCCCAAG	65	+	chr2R	10329744	10329809	10329744..10329809				0	no match
CG32707-RA	CGGCGAGGATCATAGGGACAGGGATCTCGTCACCTGCACCTATTACGTTAACGAAGCGTCCAGGAC	66	+	chrX	8979091	8979157	8979091..8979157	CG32707-RA,CG32707-RB,	FBgn0052707,	APC4,	1	.
CG4140-RA	CGAAACGGGACTGATAGATTAATCACTTAATAGTCAAACTATGCGCATACTTATAGAATAACTAATATA	69	-	chr2L	15006597	15006666	15006597..15006666	CG4140-RA,	FBgn0261881,	l(2)35Be,	1	.
CG10839-RA	AAGAACCTGAAAGTCCTGAGCCTGGCACGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCC	69	+	chr2L	15979778	15979847	15979778..15979847	CG10839-RA,CG10839-RB,	FBgn0028858,	CG10839,	1	.
CG6372-RA	TCGTCAGCGTCCCCTAAAAATTTCCAACGACATTGTTCCCAGGGAAAAAATGTTTGTTCGTTTTAAGTA	69	+	chr3L	8612458	8612527	8612458..8612527	CG6372-RA,	FBgn0035915,	S-Lap1,	1	.
CG2934-RA	GCATCTCCGAGCAGGATCTGGATGAGATGAACATCGAGATCATTCGTAACACCCTTTACAAGGCCTACC	69	+	chrX	3775855	3775924	3775855..3775924	CG2934-RA,	FBgn0028665,	VhaAC39-1,	1	.
CG13568-RA	CCGAGGATCTGCCCTTCTTCAATTCCTTGACCTATACCATCTCCACCGACCCCACAACATACGCCTTCA	69	-	chr2R	19941415	19941484	19941415..19941484	CG13568-RD,CG13568-RE,CG13568-RF,CG13568-RG,	FBgn0034965,	CG13568,	1	.
CG4790-RA	GGGCGCCTTATGAAGTTGGTTCGAATGGGGGTAGAGTCCCGACAGGATCTAATACTCACCAGTGGCATG	69	-	chrX	5852811	5852880	5852811..5852880	CG4790-RA,	FBgn0005390,	fs(1)M3,	1	.
CG6422-RB	CGATGGCCCGGACTTTGACAGAGAAAATGACTTTGGGTCCCACTACGGGTCCAATAACCGAAAAAATGA	69	-	chr3R	20860500	20860569	20860500..20860569	CG6422-RA,CG6422-RB,CG6422-RC,	FBgn0039261,	CG6422,	1	.
CG17977-RA	ACCGCATCCTGAGGCCAGAAGGTCGAATAGAACCGCTGAAAAACAATTTGTCAAAGATGTTCAACTACG	69	-	chr2R	3954716	3954785	3954716..3954785	CG17977-RA,	FBgn0040778,	CG17977,	1	.
CG18480-RA	AGTCGGGAGAAACTGTGCCTAAGATACCGCATTTGCTTGGAGCGTGTGAGTCATGAACTCCTGGCT	66	+	chr2L	15631353	15631419	15631353..15631419	CG18480-RA,	FBgn0028518,	CG18480,	1	.
CG32211-RA	TGCCTCCCGACTGATGGCTCAAATCTGCAAGAACTTCAATACCCTAACCAACAATCTGCAAACCCGTGT	69	+	chr3L	19593301	19593370	19593301..19593370	CG32211-RA,	FBgn0010417,	Taf6,	1	.
CG32828-RA	GGTTGCTGTTCCGATTCCACTTGGACATTATTCCGCCGTTCCAATTGGAACCAGCCGTCGTCTCG	65	+	chr2L	6821790	6821855	6821790..6821855				0	no match
CG14887-RA	AGGTGTCACCGGCTGTACATTACCAAAATAATGCAGAAGTTCGATTGCGACACCTTTTTCCCCGCGATC	69	+	chr3R	12307407	12307476	12307407..12307476	CG14887-RA,CG14887-RB,	FBgn0004087,	Dhfr,	1	.
CG2113-RA	CGACAAGTTGCTTGCCACTCTGTTGGGTGCCCGAAAGTATGGGTTCGTAGACTTTAGCGGAGAAACCC	68	+	chr3L	2995645	2995713	2995645..2995713	CG2113-RA,	FBgn0035384,	CG2113,	1	.
CG3455-RA	CCGATGCCGGACAATCTGCGGGTGAAAGCCTTATCCGAGTACCGAAAGAAGTTGCTAGAGCACAAGGAA	69	-	chrX	6185069	6185138	6185069..6185138	CG3455-RB,CG15896-RB	FBgn0028685,FBgn0029858	Rpt4,CG15896	2	.
CG3662-RA	TGTATTAGCCTCGAGGGCGGATTGAAAGGATACGGAGAGATTGGATCGGTACACGCGCACAGACA	65	+	chr2L	824056	824121	824056..824121	CG3662-RA,CG3662-RB,CG3662-RC,CG3662-RD,	FBgn0031285,	CG3662,	1	.
CG7011-RA	CCTCGAGGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACACCACTCGTGATCA	69	-	chr3L	15156329	15156398	15156329..15156398	CG7011-RA,	FBgn0036489,	CG7011,	1	.
CG2021-RA	GACGGACGGAACTTCATCGGGACACTCAAGGGATTCGACCAGACCATCAATATCATCATAGACGAGTG	68	-	chr3L	1777211	1777279	1777211..1777279	CG2021-RA,	FBgn0035271,	CG2021,	1	.
CG11072-RA	TACTACAAGACGGGAGCCTGGTGGACGTCACACTAGTTTGTTCAGAGGGCACATCCATCAGAGCC	65	-	chrX	13795521	13795586	13795521..13795586	CG34346-RC,CG34346-RG,CG34346-RF,CG34346-RD,CG34346-RE,	FBgn0263115,	mamo,	1	.
CG31043-RA	CCAGTTTGGATCGCCCTCCAAGACCTTTGCTCCAAAGATGCGAGGACCCGTGAATATGGTGGCTG	65	+	chr3R	14847359	14847424	14847359..14847424	CG31043-RB,CG31043-RA,CG31043-RC,CG31043-RD,	FBgn0026239,	gukh,	1	.
CG6857-RA	TGCTAGTGCTATTCCGGGATCACAAACGAGCATCCTTCTTCGGCCTCACGATTGACGCCTTCTACCAC	68	-	chrX	18620283	18620351	18620283..18620351	CG42301-RA,	FBgn0259231,	CCKLR-17D1,	1	.
CG13760-RB	GGCCCAAGCTGTTAGACCAAAACATTCCCAGTTCAGTTTCCAATTGGACGCCAGGATCAAAGGAGCGC	68	-	chrX	2479335	2479403	2479335..2479403	CG13760-RC,CG13760-RD,	FBgn0040375,	CG13760,	1	.
CG1338-RA	CCACATTCAAAATAGAACACGATCGAACACGAATCCAGGAAATGTGGCAAAGGTCCAGAATAGGGGCC	68	-	chrX	20543155	20543223	20543155..20543223	CG1338-RA,CG1338-RB,CG1338-RC,CG1338-RD,CG1338-RF,CG1338-RG,CG1338-RH,CG1338-RI,	FBgn0031128,	hydra,	1	.
CG4065-RA	TGCTGTGCATGAGTTCCTCTACATCTACTGGTATCCATACGAGTTCCTCATTGGCTTCCTGGTCTCC	67	-	chr2R	20023408	20023475	20023408..20023475	CG4065-RA,CG4065-RB,	FBgn0034982,	CG4065,	1	.
CG4301-RA	GGCCGTACTTCCTGATGTGGGTCCTATTTGCGATCTACCACAGTGTCATCATATTCTACTTCGCCTTCT	69	+	chrX	16307773	16307842	16307773..16307842	CG4301-RA,CG4301-RB,CG4301-RC,	FBgn0030747,	CG4301,	1	.
CG17769-RA	CGCGAGGCTGATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGATAAGCCAGAAG	69	+	chr3R	21638740	21638809	21638740..21638809	CG17770-RA,CG17769-RA,CG17769-RB,	FBgn0039374,FBgn0011273,	CG17770,And,	2	.
CG11198-RA	CAGGCAGGTCAGGTGTGGTACCCCGACTCCTCGTACAAAACGGCACAAGCGATCAAAGATTTTGG	65	-	chr2R	3863145	3863210	3863145..3863210	CG11198-RA,CG11198-RB,CG11198-RC,CG11198-RD,	FBgn0033246,	ACC,	1	.
CG32635-RA	CAGGAGCAGGACCATCATGTGGAGGATCAGGAGTACGACGATGGCATTGGTTTCAGTTGTGACAGC	66	+	chrX	13412609	13412675	13412609..13412675	CG32635-RA,	FBgn0052635,	CG32635,	1	.
CG17834-RA	ACACGCCCACTATTGAGAAGTACCGGGTATCGCAGAGTCTCTATTCCATTCAAACGGCGAATGCT	65	+	chr2L	8540886	8540951	8540886..8540951	CG17834-RA,CG17834-RC,	FBgn0028394,	CG17834,	1	.
CG17669-RA	TTTTCCGGAATATGAGCATTGCAAGCCGAACAAGACACTGGCCGTTGGATTGGTGCGCAATGGAC	65	-	chr2R	14341117	14341182	14341117..14341182	CG17669-RA,	FBgn0034352,	CG17669,	1	.
CG31173-RA	AGGATCCTGGGAGTGATTTGCTTTGACATAGGCCAAAGGACATCGGATGATTCCCTGGTGGTCCG	65	-	chr3R	17670847	17670912	17670847..17670912	CG31173-RA,	FBgn0045469,	Gr93c,	1	.
CG14304-RA	AGCGCCCTCCATTAACGCCTGCATACGTACCAGAGGATCAGGATCAGCTACCAGATATTCGCACCTCAT	69	-	chr3R	14420079	14420148	14420079..14420148	CG14304-RA,CG14304-RB,CG14304-RC,	FBgn0038629,	CG14304,	1	.
CG17927-RK	ACTCCCAATATTGTTTGTCATGCAGACCAGACAAGACTTACGGACGACACGAGCTACACACTGCGCTTA	69	+	chr2L	16788587	16788656	16788587..16788656	CG17927-RG,CG17927-RA,CG17927-RB,CG17927-RC,CG17927-RE,CG17927-RD,CG17927-RF,CG17927-RH,CG17927-RI,CG17927-RL,CG17927-RK,CG17927-RM,CG17927-RN,CG17927-RO,CG17927-RP,CG17927-RQ,CG17927-RR,CG17927-RS,CG17927-RT,CG17927-RU,	FBgn0086783,	Mhc,	1	.
CG3595-RA	TAGCTCCATTAACCGCATCAGAACCACCAATCCAACAGCAACCATGTCATCCCGTAAGACCGCCG	65	-	chrX	6118015	6118080	6118015..6118080	CG3595-RA,	FBgn0003514,	sqh,	1	.
CG5347-RA	TGCACCAGAGTTTGTTCCCAGGTACAAAGCCAATTCTGCCGATTTCCAAGCAACTGAAGGTGTCCAGGA	69	+	chrX	14671116	14671185	14671116..14671185	CG5347-RA,	FBgn0030578,	CG5347,	1	.
CG17793-RA	GAAATGGACAATCGCAGCAGGCAGTGACCAACAGCAAGCAGTCGCATTTCTGGCTAGATTGCTCC	65	+	chr3R	8212061	8212234	8212061..8212118,8212226..8212234	CG34402-RC,CG34402-RB,	FBgn0085431,	CG34402,	1	.
CG18327-RA	GTGGCATTTACTACAGGGGCTGGTTGGATTGTGTGCTTACGATCCTAAGATCGGAGGGTGTATATGGGT	69	+	chr2R	10055517	10055586	10055517..10055586	CG18327-RA,	FBgn0033904,	CG18327,	1	.
CG13425-RC	GGGCGATACATAACTATGATCCTATGAACTTTGACCGCGTATATGCCGATGAGTACGGTGGCTATGGCA	69	+	chr2R	16492345	16492414	16492345..16492414	CG13425-RB,CG13425-RA,CG13425-RC,CG13425-RD,CG13425-RE,	FBgn0015907,	bl,	1	.
CG5695-RA	CCGTTTCGATGGTCAATAGGTCAAAATTGGTAACTAACGAAACTCGAAAATAAGTTTTTGTCAGTCAAA	69	-	chr3R	20078926	20078995	20078926..20078995	CG5695-RB,CG5695-RG,CG5695-RH,CG5695-RJ,CG5695-RK,	FBgn0011225,	jar,	1	.
CG31302-RC	GACGGGCGAAATCATACTCGTCTACGGTGATATGGATGAAGACGGTTTCTACATGGGCGAACTGG	65	+	chr3R	11218951	11219016	11218951..11219016	CG31302-RD,CG31302-RE,CG31302-RF,CG31302-RG,CG43073-RF,CG43073-RG,CG43073-RH,	FBgn0262483,	CG43073,	1	.
CG9743-RA	AGAGAGATGCCTACACGTGGGCCCTTGATCACAGGATACATCACAAGTTCTCGGAGACAGACGCC	65	-	chr3R	26023147	26023212	26023147..26023212	CG9743-RA,	FBgn0039756,	CG9743,	1	.
CG3675-RA	CTGGTGGCCTACTTTGATGTCGGATTCAGCAAGAGTACGCAAAGGATCAGCTTCAGCACATCGCCCT	67	-	chr2L	4278256	4278323	4278256..4278323	CG3675-RA,	FBgn0031592,	Art2,	1	.
CG6915-RA	GTGAGCATTCCCTGTCGGATGGCTATGTCACTCAACCTGGCTTTGGATTATCCAATCCTCGACTTGGCT	69	-	chr3L	8467488	8467557	8467488..8467557	CG43163-RD,CG43163-RC,	FBgn0262719,	CG43163,	1	.
CG18492-RA	AGCAATATCAAAAACAACGACTAGCTCAATGACCGAAAATACCTCATCAACATCATCGGACATCACGCC	69	-	chrX	20392868	20392937	20392868..20392937	CG18492-RA,	FBgn0026323,	Tak1,	1	.
CG4204-RA	CGACACAAAATTGAACTTTGGAATGGGATTGATAATATTCGGCTTTAATTTTACCCTAACCCCTTGATT	69	-	chr3R	16404005	16404074	16404005..16404074	CG4204-RA,	FBgn0023212,	Elongin-B,	1	.
CG32354-RA	GCTCATCGGATGGCAATGTATACAACTCCACGTGCGAGATGAAGCTGAAGACGTGTGGACAGGGTGTGG	69	-	chr3L	8410248	8410317	8410248..8410317	CG32354-RA,	FBgn0052354,	CG32354,	1	.
CG33306-RA	GATTGGAGGCATTCAGGGTCGTCCTGCAAAATGGTAGCCCGAGATTTGGAATCCCCGTTATGGCA	65	-	chr2L	13843471	13843536	13843471..13843536	CG33306-RA,	FBgn0053306,	CG33306,	1	.
CG5287-RA	TGCTGATGGGATTCCAGGTGCTGTGTACACTGATTGCCCTGACCATACGATATCCACTGGCCAACTACT	69	+	chr2L	13183313	13183382	13183313..13183382	CG5287-RA,	FBgn0032477,	CG5287,	1	.
CG17838-RA	AGGACGAACTGATTCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGACTCATGATGGACCCGA	69	+	chr3R	16618134	16618203	16618134..16618203	CG17838-RA,CG17838-RB,CG17838-RC,CG17838-RF,CG17838-RD,CG17838-RE,CG17838-RG,CG17838-RH,	FBgn0038826,	CG17838,	1	.
CG8025-RA	ACACCCTGGCCATTAACAAGTCCCTGAGAGAACTAGTCAAAGGCGTGCTCACGAAGCGGGTGAAG	65	-	chr3L	19905840	19905905	19905840..19905905	CG8025-RA,	FBgn0036916,	Mtr3,	1	.
CG4756-RA	ACCCATCAAGGAGAAGGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGCTGGA	69	+	chrX	16682625	16682694	16682625..16682694	CG4756-RA,	FBgn0030788,	Sap30,	1	.
CG10159-RA	TGATGGATGATGAGGGCCTGGATCAGCCTGAGAAGCAAGTGACCGTGCTAACCCATTCGACTTCAC	66	+	chr2R	10659514	10659580	10659514..10659580	CG10159-RA,CG10159-RB,CG10159-RC,	FBgn0015602,	BEAF-32,	1	.
CG11899-RA	TCGCTCCAGCAACTATGCCAAGATCCATGATGCGACCATCAGCGATCTTCGCGAACTCCTCAATGTG	67	+	chr3R	25026443	25026510	25026443..25026510	CG11899-RA,	FBgn0014427,	CG11899,	1	.
CG7462-RC	AGTTCGATTATAGTGGTAGTATAGGTAGCAATTTCCCCAACCTAAAACCACTGTAACCGATCTTTGGGG	69	-	chr3L	7698366	7698435	7698366..7698435	CG42734-RN,	FBgn0261788,	Ank2,	1	.
CG5739-RA	GGGTCCACCTGTGCTGTACTGCAACGAATCCGACAATCAGCTGAAGAACTTTAAGCCATTCGATTTGGA	69	-	chr2L	10202952	10203021	10202952..10203021	CG34159-RA,	FBgn0085188,	CG34159,	1	.
CG6312-RA	TGGCTGGCATGGAGCGGCATATTCGTAGTGTTTATGTAACCAGTAACCGTTGACCCCATCAGTGTGCA	68	-	chr3R	6188783	6188851	6188783..6188851	CG6312-RA,CG6312-RB,CG6312-RC,CG6312-RD,CG6312-RE,	FBgn0020379,	Rfx,	1	.
CG17144-RA	GCAAACCGAATGCCACTTCCGTGACCACAAACGTGGCCATAGTCTAAGCGGTCCTCTTTGTCCTGTAC	68	-	chr3L	12200180	12200248	12200180..12200248	CG42318-RL,CG42318-RM,CG42318-RO,CG42318-RP,	FBgn0260941,	app,	1	.
CG14427-RA	CGTCGCCGATTTGCCAAAGAAGGGATAATGCTCAGATGCCTCCCTCATCGTACCAGAAGTGGAGAAACT	69	+	chrX	6935182	6935251	6935182..6935251	CG14427-RA,	FBgn0029931,	CG14427,	1	.
CG30072-RA	ACCAACACAGTTGTGGACGGAGCTATTCATCCTGACAATGCCCGACTCATGCTGGAGAAGCTTTTCGG	68	+	chr2R	10260143	10260211	10260143..10260211	CG30072-RB,CG30073-RB,	FBgn0050072,FBgn0050073,	Obp50c,Obp50b,	2	.
CG11142-RA	GGTTGCTCGAGTTTTCTAGTCTGTAGTTAAAGAATTTGGCAAACTGATTGTTGACATTTTGCGCGTC	67	-	chr2L	5763484	5763551	5763484..5763551	CG11142-RA,	FBgn0031737,	obst-E,	1	.
CG10576-RA	AGAGAAGACGGCAACAATTTGAGGATACATTTCCCCAGAAATCCTCCATCCATCAACAAGGCGGGC	66	-	chr3L	5755296	5755362	5755296..5755362	CG10576-RA,	FBgn0035630,	CG10576,	1	.
CG14998-RD	TCCACATACCATTAACCCATCCACATTTACAGCGCCTCACTGCTAGGAGGGCATATTCGAACCCCCTCT	69	-	chr3L	4124067	4124136	4124067..4124136	CG14998-RE,CG14998-RA,CG14998-RD,CG14998-RC,CG14998-RB,CG14998-RF,	FBgn0035500,	ens,	1	.
CG18746-RA	GGAAGTGTCCCGCTAACGAAGCAACTCCAAAAAGAACCAAGGACTTGGGGTGAAGTTCTGCCACCC	66	-	chr3R	3614532	3614598	3614532..3614598	CG18746-RA,	FBgn0042103,	CG18746,	1	.
CG10805-RA	GGTACATAAGTGGGCACTGGAGAGTACCTCTCGGGAAACGCGTCTCACCTACTTCCTGCTGACCAAC	67	+	chr2L	6860117	6860184	6860117..6860184	CG10805-RA,	FBgn0086451,	l(2)k09022,	1	.
CG3194-RA	GCCTTGGCTTCTTCGACAATATCACCTTGTCCACCAGTGACCATCTGGCTCACTTCTACGACGCGG	66	-	chr2R	2559277	2559343	2559277..2559343	CG3194-RA,CG3194-RB,	FBgn0033087,	CG3194,	1	.
CG1009-RB	CTGGCCCTGGTTGATTCGTACAGAAACGAGACGAACTACACGGTGTGGACTGCCATCACCAACTCG	66	+	chr3L	1521963	1522029	1521963..1522029	CG1009-RD,CG1009-RB,CG1009-RC,CG1009-RA,CG1009-RE,CG1009-RF,CG1009-RH,	FBgn0261243,	Psa,	1	.
CG18467-RA	AGTGTAATTTTTTTTGATGGATGTTGAATATTAAATATTTCCATGTCTTGATGTAAATTGGAGCAAA	67	+	chr2R	13329927	13329994	13329927..13329994	CG18467-RA,	FBgn0034218,	CG18467,	1	.
CG32245-RA	CTGAACCCACGCTAACAGATGAAATCAACTAGTCAGCAACGTTCGTAGGTCCAAAATACGAATGCCAAA	69	+	chr3L	4591750	4591819	4591750..4591819	CG42540-RD,CG42540-RB,CG42540-RC,CG42540-RF,CG42540-RG,	FBgn0260657,	CG42540,	1	.
CG15263-RA	TGGATACTACAACGAGAACTATCGCGATAGGGACACCTGTAGGGAGGCCTTTGAACTGGTCACCGTCA	68	+	chr2L	15285667	15285735	15285667..15285735	CG15263-RA,	FBgn0028853,	CG15263,	1	.
CG3571-RB	GCCAGCACTGGGGAATCTGTGAGCACGGTCGAGATTTACGATCCGCTCACCAAAAAATGGAAAATGGGC	69	-	chr3R	7835031	7835100	7835031..7835100	CG3571-RA,CG3571-RB,	FBgn0037978,	KLHL18,	1	.
CG3520-RA	ACCATCATTCGGTGCTACTTGGTTTTGTACAACGAGAAGCTTCCAAATCCTCTCAAGTGGCTTACGCCC	69	-	chr2R	19285015	19285084	19285015..19285084	CG3520-RA,	FBgn0034859,	CG3520,	1	.
CG6388-RA	CCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATGCACCGGATGTGAGACCTTCACGC	69	+	chr2L	12429016	12429085	12429016..12429085	CG6388-RA,	FBgn0032430,	CG6388,	1	.
CG3191-RA	CTTCTACCAGTGCATGTTTGGAGACGTGGAGGAGACTCGGAAGCTCATCGAGGTGAACTACGCCC	65	-	chrX	2145303	2145368	2145303..2145368	CG3191-RA,CG3191-RB,	FBgn0023525,	CG3191,	1	.
CG11373-RA	GGTCCCCAAATTGGATCCACGTTTTAAATCCTGATATTCTTTTTTTATAAAATGTACGGATTCTT	65	-	chr3R	1786069	1786134	1786069..1786134	CG11373-RA,	FBgn0040679,	CG11373,	1	.
CG17642-RA	GTCCCTCAAGCCGAAATTCCCGCAGTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACC	65	+	chr2L	1710849	1710914	1710849..1710914	CG17642-RA,	FBgn0031357,	mRpL48,	1	.
CG17654-RA	CAAGGCCAATCTGGATGTGGTTGACCAGGCGTCCATTGACAACTTCATGATCAAGTTGGACGGCACC	67	-	chr2L	1726342	1726409	1726342..1726409	CG17654-RB,CG17654-RE,CG17654-RC,CG17654-RD,CG17654-RA,CG17654-RF,	FBgn0000579,	Eno,	1	.
CG14897-RA	AGGCTTCCGTCAGTGACCTCAGAAGAGCCTGCACCTATCCAAGACAAAGTTGAGTCGATCGGGTCAGAA	69	-	chr3R	12292989	12293058	12292989..12293058	CG42232-RB,	FBgn0250754,	CG42232,	1	.
CG41136-RA	AGCATCAGCTTGGCGTTTTGGATTTCAAACACCACCAGACTATAATGACCATGAACTCAACTGCGGA	67	.	.	.	.	.	CG42598-RA,CG41284-RB,	FBgn0260997,FBgn0085599,	CG42598,CG41284,	2	.
CG14677-RA	GGCAGCTTCCCCATTTCGACTACTCACGCATGGAGTATAGTTTCAGCAACGGCGTAGTCACCCAGAGTT	69	-	chr3R	1702041	1702110	1702041..1702110	CG34113-RO,	FBgn0083949,	CG34113,	1	.
CG10761-RA	GCCATCGCCCAAAACATCACCATCACTATGAGCCGACAATTTATGCATTTACCGCTTCACAGCCG	65	-	chrX	8056623	8056688	8056623..8056688	CG10761-RA,	FBgn0030015,	CG10761,	1	.
CG7592-RA	CAGAACCATCTGATCGCTTGTCTAAAGTTCAAGTCGTAAATAAAGTATTTGTTTAACGGCCCAAA	65	-	chr3R	25541972	25542037	25541972..25542037	CG7592-RA,	FBgn0039685,	Obp99b,	1	.
CG3353-RA	TGCCAAGGTGTCCGATCTACCACTAACGGATTCGGAAAAGGAACAGCTCGACACGGTCATCGACG	65	-	chr3R	17043516	17043581	17043516..17043581	CG3353-RA,	FBgn0038869,	CG3353,	1	.
CG5207-RA	AACTAGCATCATGGCGTTCACCAAGGTTCTCCAATTGATTCTCCTAGCTGTGGTTGCCATTTCCTCT	67	+	chr3R	7066907	7066974	7066907..7066974	CG5207-RA,	FBgn0037889,	scpr-A,	1	.
CG7925-RB	TGGTACTACAAACTGAACAAAAAACTACTGAACAAAACTCCAAGAGCATGAATTTTCTGCGGCAA	65	-	chrX	2337800	2337865	2337800..2337865	CG7925-RB,	FBgn0003714,	tko,	1	.
CG30069-RA	AGCCGGGTTCTGTCTGGAAGCACAGTTGGACATAACATCAGCGAAGATTCAACATCGCGAACCGTCTCA	69	+	chr2R	10084852	10084921	10084852..10084921	CG30069-RA,	FBgn0050069,	CG30069,	1	.
CG17964-RB	CGGTCCGTGTCTCGGTTCATCTCAGGAACGAGCCATGATGCTTGGAAATCGGTTCAGTCACTTGGGAAT	69	+	chr4	128508	128577	128508..128577	CG34403-RQ,CG34403-RJ,CG34403-RH,CG34403-RE,CG34403-RD,CG34403-RB,CG34403-RC,CG34403-RF,CG34403-RA,CG34403-RG,	FBgn0085432,	pan,	1	.
CG3396-RA	TTAGTGACAGCATCACACAGCATCCGAACGTCGAAGCGAGAACATCCCAGCACGCATTCTACGCA	65	+	chr3L	14968302	14968367	14968302..14968367	CG3396-RB,	FBgn0040296,	Ocho,	1	.
CG3587-RA	ACGATCGGCTGCTAGCACTGTGATTGCGACAAGACAAATGCTAAAATAAAGTTCTTACCTCGGGCAGCA	69	+	chrX	1835429	1835498	1835429..1835498	CG3587-RA,	FBgn0023521,	CG3587,	1	.
CG13611-RA	GCCGTCAGATTAGAGCACTTTAAGAACTATGTCCAGGTGACGGATGATCAGGGTAACAAGCACACGGCT	69	+	chr3R	20106475	20106544	20106475..20106544	CG13611-RA,	FBgn0039177,	CG13611,	1	.
CG3260-RA	CCCTTAACACAAATCGTTTTCCCAGAATTTGAGATTGTAATGGACAGCAACCCCGTGGAGTCTGGCG	67	+	chr2R	20022168	20022235	20022168..20022235	CG3260-RA,	FBgn0021875,	Zfrp8,	1	.
CG9929-RA	GTCGAGGTGGCCAAATGTGAGCTGGTAATCGGAGAGCTTGGGATGTACTACAAGCCGGATGAGCA	65	-	chr3R	9768124	9768189	9768124..9768189	CG9929-RA,	FBgn0038188,	Art9,	1	.
CG1151-RA	CCCTCAGATCGAGCTTTTCGGTGGTGTTTCTCTGGTGAAGTCCAATGAAGGTCGTCAGGGCAAGT	65	+	chr3R	2061336	2061401	2061336..2061401	CG1151-RA,	FBgn0027527,	Osi6,	1	.
CG14721-RA	CCACGACACCACTTGAACCGCTCGATGTGATAACGGGTGACTTTGACTCGATCACTGAGGAAACGGTCG	69	+	chr3R	7561733	7561802	7561733..7561802	CG14721-RA,	FBgn0037942,	CG14721,	1	.
CG1857-RA	GCGTCTAAAATGAACCAAATTCGGACAAATTGATTTATTAGAATTCCATTTCTGAGTAGAGCCTTGC	67	-	chr2R	3044030	3044097	3044030..3044097	CG1857-RA,	FBgn0002930,	nec,	1	.
CG5272-RA	CGCACGCGTTCCGTATTTTCGCCCACAAGTCAAAGTACCCTTATAAATGGGGAGACCAGGCTACTGGGA	69	-	chr3L	14795977	14796046	14795977..14796046	CG5272-RA,	FBgn0001120,	gnu,	1	.
CG31120-RB	CCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAACCGAGACTCACCCATGCCAAG	66	-	chr3R	20740252	20740318	20740252..20740318	CG31120-RB,	FBgn0051120,	CG31120,	1	.
CG11172-RA	AGACGGCATCGGATCCATTGGTTGACCTGCTATTGAACCACTCAAACACACCAGAAACAGCGGCT	65	+	chrX	13556209	13556274	13556209..13556274	CG11172-RA,CG11172-RB,CG11172-RC,CG11172-RD,	FBgn0030505,	NFAT,	1	.
CG7576-RA	CGCCCACTTCATCCACACTTTGCTTTCCCCTACGAGACTGTTGCGAACTGAATCCGGATTGCGAGTTAC	69	-	chr2R	6610056	6610125	6610056..6610125	CG7576-RA,	FBgn0005586,	Rab3,	1	.
CG6220-RA	ACGACTGCTCAGGAATACCTCAAACTGGCTCACCATTCCATGATGCGTAGCTTGGACTCTACGGTGCC	68	-	chr2R	9580472	9580540	9580472..9580540	CG6220-RA,	FBgn0033865,	CG6220,	1	.
CG32498-RB	GCCCAGGATATACTCGACACGCTTGAAGAGAACAGAGACTACTACCAGAGCATGATACCGCCTTCGC	67	+	chrX	3232729	3232796	3232729..3232796	CG32498-RA,CG32498-RE,CG32498-RN,CG32498-RG,CG32498-RF,CG32498-RL,CG32498-RB,CG32498-RI,CG32498-RC,CG32498-RJ,CG32498-RD,CG32498-RM,	FBgn0000479,	dnc,	1	.
CG4843-RA	AGTAGCAGAATGTATAAAGTAAACAAAACGAAAACAAGAACACGAATTTTGTATTTTTAAAATCAATGT	69	+	chr3R	11140637	11140706	11140637..11140706	CG4843-RA,CG4843-RB,CG4843-RC,	FBgn0004117,	Tm2,	1	.
CG10732-RB	CGCCGCCTACTTACCGCTCAAGTCCAGGTCCCATCTTCATGAACCACCATAACAACACGATACATCAGA	69	+	chr3L	13439757	13439826	13439757..13439826	CG10732-RA,CG10732-RB,	FBgn0036365,	CG10732,	1	.
CG7702-RB	AAATTCCGAGCTAGCTGCACAAGTTTCGAGCCAAAGATGTCCACGACAGTGACGCGATCCCAACC	65	+	chr3R	14500160	14500225	14500160..14500225	CG7702-RA,CG7702-RB,	FBgn0038638,	CG7702,	1	.
CG33289-RA	AATCGGGCAGAGTCCCAGATCTTCGACCTACAGAGCTCTCAGTGCAAGGAGTTTTGCCTGACCAG	65	+	chr3L	21529032	21529097	21529032..21529097	CG33289-RB,CG33289-RC,	FBgn0053289,	CG33289,	1	.
CG7001-RA	GACTCAGTGGCACCGACCTCTGACCAACTCAATCTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGA	69	+	chrX	18684742	18684811	18684742..18684811	CG7001-RA,CG7001-RB,CG7001-RC,	FBgn0004462,	Pk17E,	1	.
CG6520-RA	GGAGCGAGTTGGAAAACCAAACGATTGCAGCTTAAGTCTAGTAGATCATCCTCTAAGCATGTCGGGCAA	69	-	chr2R	13363460	13363529	13363460..13363529	CG6520-RA,	FBgn0034224,	CG6520,	1	.
CG7519-RA	GCCAGAAAGGTACCCGAAGAGGAACAGTAATCCCTCGCTCTAGCTTAGATTAAGTTGTAAAGACTGGAT	69	+	chr3L	21486852	21486921	21486852..21486921	CG7519-RA,	FBgn0037087,	CG7519,	1	.
CG10234-RA	TGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAAACATGTGGCTGCAGATACCCTTCTTCTGTG	67	-	chr2L	19443772	19443839	19443772..19443839	CG10234-RA,	FBgn0024230,	Hs2st,	1	.
CG15035-RA	ATGCAGCAAATATCGGAGACAGTGGTTTTTTGGTGGTGCGATCTGGTAAAGTGGTTTGCCGGTCCCAGG	69	-	chrX	7296390	7296459	7296390..7296459	CG15035-RA,	FBgn0029949,	CG15035,	1	.
CG17785-RA	CGGCCAGTTTCTCCAACAGTCCCGACATATCCGCCAACTCAATGGACACAAATGAATTGGCTGCCTTCA	69	-	chr3R	20183255	20183324	20183255..20183324	CG17785-RA,	FBgn0039188,	Golgin84,	1	.
CG31247-RC	GCCTCCAACTCCAAGATCATTGCCATCAAAGCGAAGAACCAAAAGCGCAGGATATCCAAACGGGCTGC	68	+	chr3R	13691077	13691145	13691077..13691145	CG31247-RB,CG31247-RA,CG31247-RE,	FBgn0261649,	tinc,	1	.
CG17999-RA	CACAAGGTGACCTTTCTGTTCCTGGCCTCCCATCAGATTGCCCTGCTATCCAAGCATGACAGTGATGT	68	-	chr2R	16736249	16736317	16736249..16736317	CG17999-RA,	FBgn0034552,	CG17999,	1	.
CG10590-RA	TACCATGGTGGCGGTCACTTGCATCTGCCTGTTTGTCATCCTGCCCTTGACTCTGGTGGGTACTG	65	-	chr3L	5595471	5595536	5595471..5595536	CG10590-RA,	FBgn0035622,	CG10590,	1	.
CG14804-RA	ACCATGCGGGACATTAACAAGAAGTTCTCAGTCAAGTATTTCCTCAACCTTGTGCTGATGGACACCGAG	69	+	chrX	1769017	1769086	1769017..1769086	CG14804-RA,	FBgn0014411,	Vps26,	1	.
CG14521-RA	AAGAAAAGCACAAAAAAACAGCAACTAAAATACCCATAAAATAATAGGAAAACAAAGAGTGCCAGCAGA	69	-	chr3R	24753591	24753660	24753591..24753660	CG14521-RA,	FBgn0039617,	CG14521,	1	.
CG5644-RA	GGCTATCGGCATGTGGATCCTTCCAGCTGTTACCTTCGATCCGAATAACCTACCCAACCTGGACGTGAT	69	-	chr3L	8970709	8970778	8970709..8970778	CG5644-RA,	FBgn0035948,	CG5644,	1	.
CG31313-RA	GCTGGATGGAGATGACTTATCCAAGGCTAAGGAGCTCTTGGACACAACGCTCGCCAAACTTGCCACAG	68	-	chr3R	10392905	10392973	10392905..10392973	CG31313-RA,	FBgn0051313,	CG31313,	1	.
CG33231-RA	CGCCGAAGCACGATGATGCCGTGAGCCTAGTGCGGAATCTCTCTACTTTGGGACAACCTCGATCG	65	+	chr3L	2465357	2465422	2465357..2465422	CG42669-RN,CG42669-RG,CG42669-RH,CG42669-RJ,CG42669-RO,CG42669-RS,	FBgn0261551,	CG42669,	1	.
CG5893-RA	CCTCACACCATCTGGATCAGGGTTATCCAGTGCCGTACTTCGGTGGATTTGACCCACTGGCTCTATCG	68	-	chr3L	14169580	14169648	14169580..14169648	CG5893-RA,	FBgn0000411,	D,	1	.
CG31714-RA	CAGTGGGGGCAATGATGCAACGCTGGATCGGATCACGCTCGATCTGGACTACTTGCTGAACAGGG	65	-	chr2L	10064871	10064936	10064871..10064936	CG31714-RB,	FBgn0032180,	CG31714,	1	.
CG14219-RA	TCTATGCGGTGGACTCATTTTTCTTCCTGAGCGGTCTGTTGCTCGTGGTGATTGCCCTGCGATCAATG	68	-	chrX	19482788	19482856	19482788..19482856	CG14219-RA,	FBgn0031033,	CG14219,	1	.
CG32067-RA	GGGCGGATTGAATATCAATAGCTTGGCCAGTCTAGGCAACCTTGGCAATTTGGGCAACCTCAGCCAG	67	+	chr3L	10681485	10681552	10681485..10681552	CG32067-RB,CG32067-RA,CG32067-RC,	FBgn0010762,	simj,	1	.
CG31883-RA	AAAACCTGGAGGTGATAGCGATGGCTCGACAGGACGTCCCGAAGAGAAACCGATTGTAAGTCCTGGG	67	+	chr2L	9529324	9529391	9529324..9529391	CG31883-RA,	FBgn0032122,	CG31883,	1	.
CG15009-RA	ACTGCAGCCTGAGTTTTAGTCCAAGTGAAATCGAAAGCCCACCTTAACGTATTCCATTTCCACCGGAAA	69	-	chr3L	4235984	4236053	4235984..4236053	CG15009-RA,	FBgn0001257,	ImpL2,	1	.
CG5658-RA	AGGTTCGCATCGCTCTACCCGATGGCAAGTTAAACATTCTGCGTCGATACAGTCGCTTCAGGGAACTGC	69	-	chr3R	23374790	23374859	23374790..23374859	CG5658-RA,CG5658-RB,	FBgn0004387,	Klp98A,	1	.
CG6433-RA	TGGTCAGGCAGTTTCAGGAGCCAAATGTTTTCAAGGGATTCTTCGAGTCCTGGCAAAACGATTACGGCA	69	-	chr2L	17487403	17487472	17487403..17487472	CG6433-RA,CG6433-RB,CG6433-RC,	FBgn0003187,	qua,	1	.
CG31493-RA	GTACATGGAACTTTGGGATGCTGTCGATGCGAGCTTTAATGTCAACGAGCACTGCCAGGTGGACA	65	+	chr3R	2957856	2957921	2957856..2957921	CG31493-RA,CG31493-RB,	FBgn0051493,	CG31493,	1	.
CG14352-RA	GCCTCAGAAGCGCCTCTACCGAAGTCAAGCTCGTGCCGAATAACTCAAGCTACTCAGTTGACAGACCAA	69	+	chr2L	1612041	1612110	1612041..1612110	CG14352-RA,	FBgn0031351,	CG14352,	1	.
CG9891-RA	CATACTCTCTGGCCTACGTCACAAACGAAATGCGACCGAACGGGACTCTCCTGCAGGCTTATCCC	65	+	chr2R	19269088	19269153	19269088..19269153	CG9891-RA,	FBgn0034856,	yellow-d2,	1	.
CG9777-RA	AATGGGAAGAGCAGCGTCGTCTTAAAGCCGAAAACTCGCAAACCACAGTGGACCAGATGACTCCG	65	-	chrX	16525264	16525329	16525264..16525329	CG9777-RA,	FBgn0030764,	CG9777,	1	.
CG4816-RA	ACCAAGAGAGTGTGCCAAATGTTTGTAGGAAGGGATTCGGAGGGAGTGGATGGCAATGGACGGATCC	67	+	chr2R	13361963	13362030	13361963..13362030	CG4816-RD,	FBgn0022987,	qkr54B,	1	.
CG31893-RA	GAGCTAGTTGCCTGCGAGCAGAACACTGGATTCGATCCGAAAACTGGAAGCTGCGTCGATTGGAG	65	-	chr2L	8394575	8394640	8394575..8394640	CG31893-RA,	FBgn0040958,	Peritrophin-15b,	1	.
CG4783-RA	TGGCAGACCCAAGGTGGTTACTCAGAATGTACAGAATGCATATTGGTCTGCTCGGACAAAAGGAGGTGT	69	+	chr3R	15774398	15774467	15774398..15774467	CG4783-RA,	FBgn0038756,	CG4783,	1	.
CG18405-RA	TGCAGCTACATCTACCGTGATTGATTGATATGCAACACCAAATCGATGCCACTCATCCAGGCCCAGTCT	69	+	chr2L	8666187	8666256	8666187..8666256	CG18405-RA,CG18405-RD,CG18405-RE,CG18405-RF,	FBgn0011259,	Sema-1a,	1	.
CG10710-RA	GGGCAATTACCGGTATTACAACGGCACAGGAGACAAGACCATGCGAGGCTACGAGTTCATCTCCCG	66	-	chr3L	13510169	13510235	13510169..13510235	CG10710-RA,	FBgn0036377,	CG10710,	1	.
CG33251-RA	CGATGCATTTGAGCGTCTAGAACCGGACCTACTGCGAGATCGCTTAGATCCACTGCGAGAGCGACG	66	+	chrX	16206172	16206238	16206172..16206238	,CG9915-RB	,FBgn0030738	,CG9915	1	.
CG32805-RA	CTGCGCATGTGCTGAAAACAGCGGTGACCTTAGCCAGTCTAAGTGAGATAGCCACAGCACGTCAG	65	+	chrX	1897252	1897317	1897252..1897317	CG42527-RA,CG16902-RC,	FBgn0260432,FBgn0023546,	CG42527,Hr4,	2	.
CG1483-RB	GGCGGGGAAGGGGTAGCACCATCAAATGAATGTGTCCCAACACCTAATGGTCAGATCAATGCGGAAGAA	69	-	chr3R	27883160	27883229	27883160..27883229	CG1483-RA,CG1483-RB,	FBgn0002645,	Map205,	1	.
CG8007-RB	AGCGAGATGGAGCTACTCATGTGCAGTAGTGGCAATAAAAAGTCATTGACCTCCAGTGTGAGTGC	65	+	chr3R	4451909	4451974	4451909..4451974	CG42796-RD,	FBgn0261929,	CG42796,	1	.
CG15712-RA	AGGCGCCCATAAAAAAGTTGAGTCAGAAGAGCATCAACGTGGATGAAATACTTCAAATCGTATTTGAG	68	-	chr2R	12372375	12372443	12372375..12372443	CG15712-RA,	FBgn0034131,	CG15712,	1	.
CR32899-RA	ATTATGATGATTAAGGATACCGCCCCAGTCGGAGAAATTATGTCGATTGGTTAAACATACTGACT	65	+	chr2R	13589917	13589982	13589917..13589982	CR32899-RA,	FBgn0063378,	snoRNA:U31:54Ed,	1	.
CG2919-RA	CCCAGTCCGAAATCAAACTCAGTTTCCCCGTCTGATCCATCGCCCAAAGAGCTCACCCAGAATCGGATA	69	-	chr3R	1429797	1429866	1429797..1429866	CG2919-RA,	FBgn0261004,	asl,	1	.
CG7556-RA	TACTTTGCATTAAAGACTCTCTGGCATAGCATTTTGGACCTTGCCAATCCTAATCCGCGGCCCGA	65	-	chrX	19071167	19071232	19071167..19071232	CG7556-RA,	FBgn0030990,	CG7556,	1	.
CG31066-RA	GACAAGCGCGACAAGGTAATGTTCCCACGAAACAGGTTGTCCGCACTTCAGGCCACGACTTTGCC	65	+	chr3R	23011775	23011840	23011775..23011840				0	no match
CG3622-RA	ACGGAAAAGGAGCTCGATCTCCAATGATTTGTTCAACATAACGGAGATATTCATTAAACCATCACATTC	69	+	chr2R	18703067	18703136	18703067..18703136	CG3622-RA,CG3622-RC,CG3622-RD,	FBgn0086408,	stl,	1	.
CG5384-RA	AATTCCCCATTGACTTCGATGCCTTTGAGTTGTGTACCCCCGAATTGCAAAACAAGCTCTGCCCAATGC	69	-	chr2L	10312739	10312808	10312739..10312808	CG5384-RA,	FBgn0032216,	CG5384,	1	.
CG8947-RA	GCACCGGTCACTATGCCACCTTCAATCCCATGCAGGAGTTTATATCCGGAACCGATGAGCATGTGGACA	69	+	chr3L	13988499	13988568	13988499..13988568	CG8947-RA,	FBgn0250848,	26-29-p,	1	.
CG8804-RA	CCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACTTCATCGGAGCTGTGATACCAGTCGGCGT	69	-	chr2R	5291812	5291881	5291812..5291881	CG8804-RB,CG8804-RA,CG8804-RC,	FBgn0016078,	wun,	1	.
CG4383-RA	GCCGAAATCACATAAGGGTTATCCAGCCGATGAACTTCAATGGCCAGAAGCTATATGTTTGCGGGACCA	69	+	chr2R	12310528	12310597	12310528..12310597	CG33960-RA,CG33960-RB,	FBgn0053960,	CG33960,	1	.
CG9380-RB	GCGGTTTTCAAGCTTTGTCCGAGATCCCACTCAAGACCTTTTCTCCCTAACGTTGGGAAGTACACCGGC	69	-	chr2R	21073492	21073561	21073492..21073561	CG9380-RB,	FBgn0035094,	CG9380,	1	.
CG3265-RB	TTTTCACTAGCTGACTTTTGTCGTTTTGAGTGTTGTATGTAGTGGATCACAAGAGCCGAACCAACGGTA	69	+	chr2R	2643315	2643384	2643315..2643384	CG3265-RB,CG3265-RD,CG3265-RA,CG3265-RE,CG3265-RF,	FBgn0027066,	Eb1,	1	.
CG8912-RA	GCAGCAGAAATCGCACAAAAACGACAATCACTGAGGACGTTCGGATGTATCGGAATCGTCGGTAGGGGG	69	-	chr2R	12752155	12752224	12752155..12752224	CG8912-RB,CG8912-RA,CG8912-RC,	FBgn0014870,	Psi,	1	.
CG5430-RA	AGTACGACAACACCATTGACATAGAGGAGGGCAAGACCTATACTCCGACGGAGCTCAAGTTCCAGCCGA	69	+	chr2L	1329385	1329454	1329385..1329454	CG5430-RA,	FBgn0011294,	a5,	1	.
CG6903-RA	GTCTTCCCCTCGTTCCTCTGGATCATGGGCGTGTGCATACCGCTCTCCGTCAAATCGCAATTGTC	65	+	chrX	4814459	4814524	4814459..4814524	CG6903-RA,	FBgn0029737,	CG6903,	1	.
CG4353-RA	CCCAGAGACGCATCTACCGTACGATAGATCAATGAGTAGCGCTGCAAATCATGGTCATGTGATGCTGGT	69	-	chrX	12974427	12974496	12974427..12974496	CG4353-RA,CG4353-RB,	FBgn0010303,	hep,	1	.
CG30277-RA	TTCTGGGTGTAATGTGCTTCCTTAAACTCGTGGGAGCATCTAGTAAATCGACGAATCTGCTCCTAGCCC	69	-	chr2R	18106444	18106513	18106444..18106513	CG30277-RA,	FBgn0050277,	Oatp58Da,	1	.
CG9517-RB	AGGGGTGGCCGCAAGAATGTGGTTTTCGTGAGAAGAGAAGTGATAGCCAGTGCTGGAGCTCTGAATACT	69	-	chrX	14770553	14770622	14770553..14770622	CG9517-RB,CG9517-RA,	FBgn0030591,	CG9517,	1	.
CG30350-RA	TTTATTTATTGATAAAGGTCTTTTCGCCCAATTTAAATGGCTGATTTTCCGATGTGTGTGACCCCGTCG	69	+	chr2R	4713980	4714049	4713980..4714049	CG30350-RA,	FBgn0050350,	CG30350,	1	.
CG12418-RA	TCATCAAGAAACTGCCCAGTCTTGGCCAATTTCACGTTTACCGGCTGACCAAGAACGTCTGCCAGACTT	69	+	chr3R	5701001	5701070	5701001..5701070	CG34360-RD,CG34360-RA,CG34360-RC,	FBgn0263097,	Glut4EF,	1	.
CG18063-RA	TCTCTCTCTGGACACCATCAAACACAACATACCTCGATCGAACACACCTTGATGGCCAAGCTGGACTCT	69	+	chr2L	15960993	15961062	15960993..15961062				0	no match
CG12320-RA	TTCACAATGAACAAGGACAACTCCAGCATGAAAATGGATCCGCAGCTAGCCCTACGCCTCCTGGC	65	-	chr3R	14078362	14078427	14078362..14078427	CG12320-RA,	FBgn0038590,	CG12320,	1	.
CG32602-RA	GCCAACTGACGGAACAACGCCAGAACGGACTTCTCAGAAGACGACAACCTTGAAGCCAACATCGGAGAA	69	+	chrX	14181919	14181988	14181919..14181988	CG32602-RA,	FBgn0052602,	Muc12Ea,	1	.
CG12274-RA	CTACTCCTGTGTGGCGGAAAATCAGCTGGGAAAGGCACGCAAGACCCTCCAGTTGAGCGGAAAAC	65	-	chr3R	23607170	23607235	23607170..23607235	CG34353-RA,CG34353-RB,	FBgn0085382,	CG34353,	1	.
CG8026-RA	AGCGCAAAAGAAATCACCAGAGATTGCACAATATGAATCCGATCAAGGCACAGTCAACGGGCAGTCCCA	69	-	chr2R	5078897	5078966	5078897..5078966	CG8026-RB,CG8026-RD,	FBgn0033391,	CG8026,	1	.
CG10619-RB	GCAGGGCAGTCCGTAGACAATCGAACCGAATCTAATCCAGCTTCTTTTGTTGCTCCCAGAATCCAAGCT	69	-	chr2L	18860903	18860972	18860903..18860972	CG10619-RB,	FBgn0003896,	tup,	1	.
CG13018-RA	CTCCAGGACAACAACGTTCCAGCTGAGTGCCAGGTGCTCCGCAATACCTTCTACGAGTGCAAGCG	65	-	chr2R	10044718	10044783	10044718..10044783	CG13018-RA,	FBgn0040751,	CG13018,	1	.
CG12403-RA	GGCCCGCTTCAGGTCTAGTCAGGTCAGAATCGAATCACCAGAAGATACGCAAAACGAAAGGAAAGACGA	69	-	chr2L	13001156	13001225	13001156..13001225	CG12403-RA,	FBgn0020368,	Vha68-1,	1	.
CG4437-RA	GGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGCCCATCGACAATTAAGCCCCACCGA	69	+	chr3L	9343791	9343860	9343791..9343860	CG4437-RA,	FBgn0035977,	PGRP-LF,	1	.
CG8893-RA	GCATCACCTACATACATATGCGCTATGCTCTGAAATGCTACTGTTTTCGCTCTTCAATTACCAGCCACA	69	+	chrX	15763507	15763576	15763507..15763576	CG8893-RA,CG8893-RB,	FBgn0001092,	Gapdh2,	1	.
CG7957-RA	GGAACTTCGCGACCTGATCCTCTGCCAGATCAACTCTCACCAGATCTCCTGCCTGATCAGTCTAGCG	67	+	chr3R	14016451	14016518	14016451..14016518	CG7957-RA,	FBgn0038578,	MED17,	1	.
CG13843-RA	GGGGATCGACCATTCCCATCCATTTGCTGAAGCCAACCTTCAAGCATTGTGAGAATATCTACTCCCGCT	69	+	chr3R	18435497	18435566	18435497..18435566	CG13843-RA,	FBgn0038993,	CG13843,	1	.
CG18823-RA	ATAGACGCGCTCGACCAAATTGTCTTCAAATCGAAGGTTCTCCAGGTCTCGAACGCCACCTTTCCTCCA	69	+	chrX	884800	884869	884800..884869	CG18823-RA,	FBgn0042146,	CG18823,	1	.
CG10642-RA	CGGACATCGGTGTCTTTGTTAAGGATCTCAGTGGCTATGTGGTGCACAACGCCGATGATCTGGAGAACA	69	-	chr3L	5351741	5351810	5351741..5351810	CG10642-RA,	FBgn0004380,	Klp64D,	1	.
CG18269-RA	GGCCACATCCAAGTTGGTACTCACCGAAGAGCTGCTCAAATTGCAAAGGCAACGACTGGCAGATACCAA	69	+	chr2L	5552251	5552320	5552251..5552320	CG18269-RA,	FBgn0031719,	CG18269,	1	.
CG5036-RA	AGATTCCTAAACTCTCAAAAGTTCAAGACACTAGCTCAACTGCAAGACAACTCGAATGCCGGTTCCAAA	69	+	chr2R	13685187	13685256	13685187..13685256	CG5036-RB,	FBgn0028743,	CG5036,	1	.
CG6688-RA	ACCCGGCGATTGCGTTCTGGAGGTAAATGGCAACGATGTTTTAGGCTTGAGAGTGTCTGAAATCGCCAA	69	+	chr3R	18838510	18839684	18838510..18838532,18839637..18839684	CG6688-RA,	FBgn0039038,	CG6688,	1	.
CG18636-RA	GAACGAGGAGTGAAGAATGCACCGGATATTACTGCAATTTTCGAGAGGAGCACATGGTAGATGCGGGCT	69	.	.	.	.	.	CG18636-RA,	FBgn0032551,	CG18636,	1	.
CG13859-RA	ATCTGGATGCCATCGGTGTCGATAATCCCTCGCATCGTGGCAAACTTCTGAAGAGTGTGCGCATG	65	-	chr3R	18144253	18144318	18144253..18144318	CG34377-RA,CG34377-RB,	FBgn0263117,	CG34377,	1	.
CG32651-RA	CGGCCAATCAAGTTAATGCACTTACTCAAAAAGGCAAGGAAAAGGTGGGCATTACGTTTATCGCCAGGA	69	-	chrX	12300595	12300664	12300595..12300664	CG32651-RA,	FBgn0052651,	CG32651,	1	.
CG30189-RA	TGCCATCTTCTTGACTTTGCTACCGAGTGCTTTCTGGAAATCGGCCAAGCTTTTGAGTACGGCGGACTG	69	+	chr2R	18968205	18968274	18968205..18968274	CG30189-RA,	FBgn0045483,	Gr59a,	1	.
CG31865-RA	GGCCGTGCAAGTTCTGCTCAAGGATCTACTATCGGCAATCATCAAGAAACGAAAGCACTACAAGACCAG	69	.	.	.	.	.	CG31865-RA,CG31866-RA,	FBgn0051865,FBgn0051866,	Ada1-1,Ada1-2,	2	.
CG30445-RA	CGCCACTGAGAAGGACATCCTGGAAGCTTGGACCCAGATAAAGTGCTTTGCTGAGGAAATACTGCGGGA	69	-	chr2R	2565150	2565219	2565150..2565219	CG30445-RA,	FBgn0259977,	Tdc1,	1	.
CG6936-RA	TTGGCTTTCCGTCATCAGTCTGCACCTTTGGAACACGTTCAGAGGCTCCTCCCACAAAGCGAATC	65	-	chr3L	344767	344832	344767..344832	CG6936-RA,CG6936-RB,CG6936-RE,CG6936-RC,CG6936-RD,	FBgn0023000,	mth,	1	.
CG11194-RA	AGCAGACCAAGTGTGATAGTCTTAAGTTTCGCATCCTACACAGAGAGAAAAAAATGGAGAAACAACGCA	69	-	chr2R	3883052	3883121	3883052..3883121	CG11194-RA,	FBgn0027788,	Hey,	1	.
CG32843-RA	GGTCAAGAACCCAAAAATCAAACCCCACCAAAAGCTACAGCCCATTGAACCCAGTTAGTATCGCCAGGC	69	-	chr2R	9155937	9156006	9155937..9156006	CG32843-RA,	FBgn0052843,	Dh31-R1,	1	.
modified_GFP	TCCTGGGGCACAAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGA	69	.	.	.	.	.				0	no match
CG40040-RA	GCCCTTATGCCCAAGTTATGGTTGGGTTAATGGACACCAGAGCTTTGGTTACTTGTATAGGGGGCCGCT	69	+	chr2LHet	152277	152346	152277..152346				0	no match
CG12477-RA	GTGGGATTGCCGACCCATGCTCTAGGGCTACCGATTCCATCAGATTTTTCGGGACTTGGCAATTGTCTT	69	-	chr3L	18715507	18715576	18715507..18715576	CG12477-RA,	FBgn0036809,	CG12477,	1	.
CG10685-RA	GCACTTCCGCATTCAATCCCGTCGAGACAGAGCCATAGATATACTTAAACGGGGACTGGAGGATCTGGA	69	-	chr2L	19133127	19133196	19133127..19133196	CG10685-RA,	FBgn0086447,	l(2)37Cg,	1	.
CG7311-RA	GTGACCTCCAGTTGGACACAGGACTTGAAGTTAGACGGAGCCGAATCATGGTGTTGCATGCTGCC	65	+	chr2L	13709806	13709871	13709806..13709871	CG7311-RC,CG7311-RD,	FBgn0028848,	CG7311,	1	.
CG13557-RA	CACTCCCGAATCGGATGAAGCCAGATTGGTGTATCCCTGCTACTGCTACAAGCCAACTCCCGAGG	65	-	chr2R	19363406	19363471	19363406..19363471	CG13557-RA,	FBgn0034867,	CG13557,	1	.
CG13535-RA	GCACTTGAATACTTAAGTGACGCTCAATTTGATGGACAAGGACGTCGAGAATCAGCGGGCAAGCC	65	-	chr2R	18752136	18752201	18752136..18752201				0	no match
CG7456-RA	ATTCGCAGGGCTCTGACAACCCAATCGATAAACGGAACCTGTGCTGTGATCAACAACGTGGCTGC	65	-	chr2L	10486827	10486892	10486827..10486892	CG7456-RA,	FBgn0032258,	CG7456,	1	.
CG9366-RA	ACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAGGACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGC	69	-	chr3R	5323451	5323520	5323451..5323520	CG9366-RA,CG9366-RB,	FBgn0014380,	RhoL,	1	.
CG11992-RC	TGCGTGGAAAGCTTCCTTAATGGAGTGCCAACCGTACAATTGGACCTCTCGCTAACGAACGACGATGGT	69	-	chr3R	4870728	4870797	4870728..4870797	CG11992-RC,CG11992-RD,CG11992-RB,CG11992-RA,	FBgn0014018,	Rel,	1	.
CG14307-RC	ACGATCCAGGCGTTATCGAGGAGGTCGTTGTGGATCACGTTCGTGAGATGGAAGCGGGGAATGAG	65	-	chr3R	14252745	14252810	14252745..14252810	CG14307-RI,CG14307-RJ,CG14307-RL,CG14307-RM,CG14307-RC,CG14307-RE,CG14307-RN,	FBgn0004652,	fru,	1	.
CR33294-RA	GCAGGACCTGGCGTTTTCTCAAGCAGCATACCCGCTAGCAAATGACTTTGTAGCTTCTGTGTGCGTTGA	69	+	chr3R	20234	20303	20234..20303	CR33294-RB,	FBgn0053294,	CR33294,	1	.
CG13386-RA	ATGGCCATTATTCACCGCCCGAATATGCGTATCCGTATCCTCTGGATCACCACGAGATAGCCGCG	65	+	chr2L	8399676	8399741	8399676..8399741	CG13386-RA,	FBgn0032040,	CG13386,	1	.
CG4686-RA	TCAGTCGCTGACACCATTGAATACGTGACCCTGGGCAATCCTGTCAGCAAGATGGTAGCCTCGTC	65	+	chr3R	15690557	15690622	15690557..15690622	CG4686-RA,	FBgn0038739,	CG4686,	1	.
CG10134-RA	TCGATGTATCGCATGGAGGAATACCTTAAAGCCACCTGCATATCGGATTTTTCCAGCCTGCCCACTCGA	69	-	chr3R	8668727	8668796	8668727..8668796	CG10134-RB,CG10134-RA,	FBgn0038087,	beat-Va,	1	.
CG14451-RA	ATCCAGCCATCAGGGATAGTCAGTCCGCCATCACTTTGGGGAGGCATGTGTGCAAAAAAGGCTAC	65	-	chr3L	22714724	22714789	22714724..22714789	CG14451-RA,	FBgn0037183,	CG14451,	1	.
CG4484-RA	CCCAGGATTTGGAGACCCAGTCGGATTACGATGCTCCCGTCTCCCTTAAGGCCTATCTCAAGAGCATCT	69	-	chr3L	9197453	9197522	9197453..9197522	CG4484-RA,	FBgn0035968,	CG4484,	1	.
CG3775-RA	TGTCACTTAGCCAAGCCAAATTGGAATATCGTCAGGTTTTTGGTGAGCCCGTGACTTCGGTGCCAG	66	+	chrX	12697064	12697130	12697064..12697130	CG3775-RA,CG3775-RB,	FBgn0030425,	CG3775,	1	.
CG5497-RA	TCTGGTGTACCGATGGCTTCATTAACCTGTCGTTCCCGAATGCCAATGGTCATTCGACTTATCAGCGGT	69	-	chr2R	14502352	14502421	14502352..14502421	CG5497-RA,	FBgn0034361,	mRpS28,	1	.
CG10575-RA	CCTGGTGGACATAGATGATACGCTGCAGTACGAAATTGTGCCCATCGATGATCCCTTTGGTCCCACGCA	69	-	chr3L	5761103	5761172	5761103..5761172	CG10575-RA,	FBgn0035632,	Ppat-Dpck,	1	.
CG5411-RA	GATGGCCAACTCCAAATAGCATACGGCCTTCCGGAGATTGTTCTCGGGTCTACTGAAGCCACTGC	65	+	chr2R	19566193	19566258	19566193..19566258	CG5411-RC,CG5411-RD,CG5411-RE,CG5411-RB,CG5411-RA,CG5411-RG,CG5411-RH,CG5411-RI,CG5411-RJ,CG5411-RK,CG5411-RL,CG5411-RM,	FBgn0034886,	Pde8,	1	.
CG1342-RA	ATTCCAGGTAGCAGATCTTCCACAGGTCAAAGCCCGAGTTCTAAGCCTGCCCTACGAAACCTCCC	65	+	chr3R	26517807	26517872	26517807..26517872	CG1342-RA,	FBgn0039795,	Spn100A,	1	.
CG31932-RA	CCTCGAAGATTCACACCATCTAAGCTCCTCAAGAATTCACGCACTAGCATCCTTGTACGATCGCCTGCT	69	-	chr2L	1755756	1755825	1755756..1755825	CG31932-RA,	FBgn0041249,	Gr22f,	1	.
CG9195-RA	GACACTCTGCTTTCCGGGGATCTAATCAAATCAAAAGGAGAATCAATCAATCAACCACGAACTCAAGCA	69	-	chrX	15341383	15341452	15341383..15341452	CG9195-RA,	FBgn0040285,	Scamp,	1	.
CG8424-RA	GGTCTGCACACCATACGCATTCCGGTTAGCTTCGATGATTTTCCCAAGGACTCGGAAGATGCCAAGGTT	69	+	chr2R	12006253	12006322	12006253..12006322	CG8424-RA,	FBgn0034076,	Jhedup,	1	.
CG5134-RC	CGTGTTTTTTATGATGGATTTGTCGCCAAACAATCAGATCGAGGACAGAAAACCCATCCTAACCGCCGA	69	+	chr2R	14054811	14054880	14054811..14054880	CG42517-RC,CG42518-RA,	FBgn0260401,FBgn0260392,	MED9,CG42518,	2	.
CG6638-RA	GTGGCCTTGTCGTACGGAGCACACTCCAATCTGTGCATCAATCAGCTGACAAAGAACGGCACCCC	65	-	chr3L	8568518	8568583	8568518..8568583	CG6638-RA,	FBgn0035911,	CG6638,	1	.
CG4735-RA	AGTTTTGTGTGGTCTATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCGGTGAAGCTCG	66	-	chr2R	19729966	19730032	19729966..19730032	CG4735-RA,	FBgn0003401,	shu,	1	.
CG14020-RA	TATTGGACAGAGGATGTGGACTACGATGGCGTAACAGATCGGGCGCACTTTCAGCTGGAACTGCA	65	+	chr2L	5518171	5518236	5518171..5518236	CG14020-RA,	FBgn0031707,	CG14020,	1	.
CG10694-RA	TGGGATTCCTCAGGAGGTTGTTTCAGAGCAGGGATTAGCTGCAATCCCGAGCGTACAGACAAGTGATCA	69	+	chr3R	19933613	19933682	19933613..19933682	CG10694-RA,	FBgn0039147,	CG10694,	1	.
CG5105-RA	ATGGAAGAGTGGGAGAGGAGGTCTTGTTGGCCGTAATCAAACTCGCCGATCAATCGCCTGAGCTC	65	-	chr2L	1167860	1167925	1167860..1167925	CG5105-RA,CG5105-RB,	FBgn0024314,	Plap,	1	.
CG30379-RA	ACGAGTCCCAGGACACGAATTCCGATCCAAAAGATGGCGAACACTTGGTCGAAAATGGGATGATTTCCC	69	+	chr2R	3828566	3828635	3828566..3828635	CG30379-RB,	FBgn0050379,	CG30379,	1	.
CG1910-RA	GCCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGATGAGACGCTCGTCGAAAACACA	69	+	chr3R	27575608	27575677	27575608..27575677	CG1910-RB,CG1910-RA,CG1910-RD,CG1910-RC,	FBgn0022349,	CG1910,	1	.
CG9183-RA	TCCTCCCACTTTTATTAGCAATCGTCTGCGTTAATGTATTGTCATTTTGTAATAATTTATTAATTTTAA	69	-	chr2R	16150495	16150564	16150495..16150564	CG9183-RA,	FBgn0003114,	plu,	1	.
CG12767-RA	TTAGGACGAAATGAGCCGAAAGAACGGAAACCAGGACACCTTTCCCAAGACGGAGAAGATGCAGCGCTA	69	+	chr2R	14016171	14016240	14016171..14016240	CG12767-RA,	FBgn0040465,	Dip3,	1	.
CG5473-RB	GCCGATGGCTTTGTGAAAATCAGTGAAGATAACAATCCTTAAGCTAAAGTCTATATACATAGATCTCCT	69	-	chr2R	14540056	14540125	14540056..14540125	CG5473-RB,CG5473-RD,	FBgn0034371,	SP2637,	1	.
CG12656-RA	GGCCAGTGCAAGAAGGACATCTGTCAGTGCTTTTCCTAGGTCTACTTCGACTGTAAGCCAAAACAGCGT	69	+	chrX	20016813	20016882	20016813..20016882	CG34331-RB,	FBgn0085360,	CG34331,	1	.
CG8695-RA	TCTGCGTGATGAGCCTACTTTGAAGCAGGGTGATGTCTCCGTAACAGCCATTGGTCCAAATGTGCTGG	68	-	chr2R	4343795	4343863	4343795..4343863	CG8695-RA,	FBgn0002571,	Mal-A3,	1	.
CG11144-RA	AGGAACAAATGCGTCTTCAAGTACCCTTCCGACACAAAATAGCCCCCACCTTGATGAAGCATCAGCCCA	69	+	chr4	967089	967158	967089..967158	CG11144-RA,	FBgn0019985,	mGluRA,	1	.
CG5870-RA	GAGCTGCTGATGAACAACCACCAGAGCCTTAAGGCCGAGATCGACACACGGGAGGACAACTTCGG	65	+	chrX	17561057	17561122	17561057..17561122	CG5870-RA,	FBgn0250788,	beta-Spec,	1	.
CG8811-RB	TGCACACCCGAGCTGAAGAATAAGCGAGCTTTCCTGTTCAATAAACTGGTGCAATTGATGCCACCGAGC	69	-	chr2R	8516577	8516646	8516577..8516646	CG8811-RB,CG8811-RA,	FBgn0033757,	muskelin,	1	.
CG8580-RA	AGGACGAACAACTATTGACAGTGCATTTCAGTGGCCTTTGGAATACTGCTCAAACAACCAGCAAGCAAT	69	+	chr3L	7363036	7363105	7363036..7363105	CG8580-RA,CG8580-RB,CG8580-RD,CG8580-RE,	FBgn0082598,	akirin,	1	.
CG32919-RB	CGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAATACTGCATATCACACTGCT	69	-	chr3R	8217408	8217477	8217408..8217477	CG10096-RA,CG10096-RB,CG10097-RA,	FBgn0038032,FBgn0038033,	CG10096,CG10097,	2	.
CG12519-RA	CGCCTTTGGCTTACTCCGCACCACTGAGCTACGCCGTTCCATCTGCACCGCTCCTTATCTAAATTACTA	69	+	chr3L	19466031	19466100	19466031..19466100	CG12519-RA,	FBgn0036872,	CG12519,	1	.
CG9245-RB	ACACCTGTCTCCTCCGTACTGGTTATCTGCCGATATTGTGGAATTGTAGGCACGCCCTAAAGAGCCCGA	69	-	chrX	15597041	15597110	15597041..15597110	CG9245-RB,	FBgn0030670,	Pis,	1	.
CG13715-RA	ACGGCAATGGGAATGGAAATGGAAATCGCAAAGCGGGCGGCAAACAAAATGGATACCATGGCGTCAATA	69	-	chr3L	4637459	4637528	4637459..4637528	CG42664-RB,	FBgn0262870,	axo,	1	.
CG18106-RA	GGGCCAAAACTTACCTCAAATCCAAAGCACCATATTTATACTCTCACTCTTGTACTAAAATGAAAACTA	69	+	chr2R	14274420	14274489	14274420..14274489	CG18106-RA,	FBgn0025583,	IM2,	1	.
CG8038-RA	TGGAAAGTTAGCATCGCTTTTCAATAGAAATTTAATAATTGCCCTCAAAGATCCTCTAAAACTTTACTT	69	-	chr3L	7970949	7971018	7970949..7971018	CG8038-RA,	FBgn0035831,	CG8038,	1	.
CG5278-RA	GCTAAGCAGATTTTTGAATTTCACATCGAAACGATCGTCGCTATATAATCGTATTTGTGGGAGCA	65	-	chr3R	18386056	18386121	18386056..18386121	CG5278-RA,	FBgn0038986,	CG5278,	1	.
CG4904-RA	ATCATCCGTCACGGAATTCGCGCTATACTCGGTACCCTGCCTACGGATGAGCAAGGCAAAGATGC	65	+	chr2L	10222068	10222133	10222068..10222133	CG4904-RA,	FBgn0250843,	Pros35,	1	.
CG7824-RA	CCGGTGCGAAGACGGATTTTCAAAGGTATTCCTGTCGGACTGTGTTGCCGCGATTAGCAACTCGTGG	67	-	chr3R	25683832	25683899	25683832..25683899	CG7824-RA,CG7824-RC,	FBgn0039711,	CG7824,	1	.
CG13678-RA	CATCTACCAAGTGACAATCCAAAAAGAAAACCAATACATCAACATGTTCAAATTCGCTGCTATCT	65	+	chr3L	8215259	8215576	8215259..8215314,8215566..8215576	CG13678-RA,	FBgn0035859,	CG13678,	1	.
CG9236-RA	TTTACGGAACAGGAATTGGATGACTACCAGGTGAGCGATCAATCAGATGAAGTTCACTTCCACACAGCT	69	+	chr2R	16767574	16767643	16767574..16767643				0	no match
CG40090-RA	TCGGTAAAAGCATGGATTCAAGGCGGAATTGTAAAAGTTCTGGAATGGCCACCTTACTCCCAGGACCTT	69	-	chr3LHet	1723060	1723129	1723060..1723129				0	no match
CG4405-RA	TGGGCTCTGTTTTTGGTTTACCAGTTGAACATTTTCGAAACGAAATTGAATACGGAAAGGTTTAAGGAG	69	-	chr2L	9548566	9548635	9548566..9548635	CG4405-RB,CG4405-RA,CG4405-RC,CG4405-RD,CG4405-RE,	FBgn0032129,	jp,	1	.
CG7431-RA	ACATCGCGAACGTTCTCCAACCAGACGATAGCCAAGGAGCTCCAAGACATGATGCTCAGCGACAG	65	-	chr3R	13578625	13578690	13578625..13578690	CG7431-RA,	FBgn0038542,	TyrR,	1	.
CG32576-RA	ACGTTGGAGATGGGTCTCTCGATAGCTATCGCACCCCGTTATCGATCAACGAGCACTACGGTTGCGTTT	69	-	chrX	16180308	16180377	16180308..16180377				0	no match
CG12591-RA	CCCACAGACTGGGTCACGGGTACACTAGTCTACACCAGTGGCTAATCTTTCTTTTGGTGGCCCTGAACA	69	+	chr3R	995211	995280	995211..995280	CG12591-RB,CG12591-RA,	FBgn0037295,	dpr16,	1	.
CG4268-RA	CCCAGCCGTGAAGAACATGTTGTCGCAGAACTCTCAGTTTACCGAGTATCCCGTCTCGCAACTGCG	66	+	chr3L	20769320	20769386	20769320..20769386	CG4268-RA,CG4268-RC,CG4268-RE,CG4268-RF,	FBgn0016696,	Pitslre,	1	.
CG16735-RA	ACCGGTAACTATTCCTTTGCAGGCACACTTATTCATCCGCGGGTGGTTATGACTGTCACCTACCGGGTT	69	+	chr3R	5079737	5079806	5079737..5079806	CR16735-RB,	FBgn0037666,	CR16735,	1	.
CG30284-RA	GCCACCTACGACGACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCAAGCTGAG	69	-	chr2R	17539087	17539156	17539087..17539156	CG30284-RA,CG30284-RB,	FBgn0050284,	CG30284,	1	.
CG5911-RA	GCAGGGCGATTACTGCTGGAATTGGTGACATTGGGAAGAAGGAAGGAAGACTCTTCTCGCGGGCG	65	+	chr3R	17088040	17088105	17088040..17088105	CG5911-RA,	FBgn0038874,	ETHR,	1	.
CG1257-RA	GCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGCGATCCCAAGAACGTGACCGC	69	-	chr3R	3365903	3365972	3365903..3365972	CG1257-RA,CG1257-RB,	FBgn0015571,	alpha-Est3,	1	.
CG1651-RB	TGGCTAGAACATGGAGGCATATTGACGGGCAATGTACTAGCTGAAGCCCTCTACAAAATCGGCCGCTCA	69	-	chr4	137599	137668	137599..137668	CG1651-RB,CG1651-RA,CG1651-RC,CG1651-RD,CG1651-RE,CG1651-RF,	FBgn0011747,	Ank,	1	.
CG18212-RG	AGAGAAGAAATGCTAGCAAAGGAAAAGTCCGACTCTGATTACAGAAACAGGCAATTTCCACCCAAGCCC	69	-	chr3R	13500135	13500204	13500135..13500204	CG18212-RF,CG18212-RE,CG18212-RG,CG18212-RA,CG18212-RD,CG18212-RB,	FBgn0038535,	alt,	1	.
CG13772-RA	TCGTTTGTGGACACCACCCTGCAATTCAACAGTCCGCAGCAATTCGACTATGCTGTGCAGTCCTC	65	+	chr2L	6905665	6905730	6905665..6905730	CG13772-RA,CG13772-RB,	FBgn0031866,	neuroligin,	1	.
CG13235-RA	TCGTCGCAGCTCGACATAGACAAATGTTGCTCTTGTCACAAGTGGAGGAGGCAGCAACAGCAGCA	65	+	chr2R	6968556	6968621	6968556..6968621				0	no match
CR32385-RA	CCTGCACCTTTTAGCGGGCATTTTCCAAACCGGTTTACGAGGTTTTTCATTGAGGCAAACAGTTTTCCT	69	+	chr3L	6971144	6971213	6971144..6971213	CR32385-RA,	FBgn0047205,	CR32385,	1	.
CG11261-RA	CGAGGTAAGCACTTTGCAAATGGCCGTTCTGATGCTATTCAATCGGCATGAACGATTTACGGAGCAGGA	69	-	chr3L	13003074	13003143	13003074..13003143	CG11261-RA,	FBgn0036332,	CG11261,	1	.
CG1659-RA	CGGCTTTTGCTTTCCATTTTCGAAGAATACGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGA	69	-	chrX	7183543	7183612	7183543..7183612	CG1659-RA,	FBgn0025549,	unc-119,	1	.
CG8174-RA	ACTAGAGCCACACGAAATTTATGAAATTATTCTTGACCACTCTTAACACAAGCATTAACACCTAGAGGC	69	+	chr2R	11274413	11274482	11274413..11274482	CG8174-RA,CG8174-RB,CG8174-RC,	FBgn0026370,	SRPK,	1	.
CG1871-RA	TCATCGACACAATGGTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACCTATGCGCCCTACA	69	-	chrX	8799164	8799233	8799164..8799233	CG1871-RA,CG1871-RB,	FBgn0011586,	e(r),e(r),	1	.
CG5505-RA	AGCTAGAACATAATTGTTGCCTCCCAAAATCATCCCCAACCTTCACCGAAGCACACAGTCCCATTAGAA	69	+	chr3L	5768837	5768906	5768837..5768906	CG5505-RA,CG5505-RD,CG5505-RB,CG5505-RE,CG5505-RC,CG5505-RF,CG5505-RG,CG5505-RH,	FBgn0260936,	scny,	1	.
CG12055-RA	GCGCAATTGAGGATGCTTTTTTTTCAAATGCACAAAATAGCCATAATTACGCAAAGCTACATATTTATT	69	-	chr2R	3679484	3679553	3679484..3679553	CG12055-RA,CG12055-RB,	FBgn0001091,	Gapdh1,	1	.
CG12117-RA	GTCCGGCGATCATGTGGATTACAGGGATGAGCAGTTCTAGCTAGTTAATCAGTATGTTGCTATCTGTGG	69	-	chrX	8357524	8357593	8357524..8357593	CG12117-RA,	FBgn0014032,	Sptr,	1	.
CR31969-RA	AGAGAAGAGGATCCCCAATCCCAACCGAGATCAACAATGAGAAGTAGTTTCCTGGGTTCCCGAGAGCGA	69	+	chr2L	4322075	4322144	4322075..4322144				0	no match
CG9458-RA	GCTCATCCAGTTTGGAATCGTTCTGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGC	69	-	chr3R	5644845	5644914	5644845..5644914	CG9458-RA,	FBgn0037765,	CG9458,	1	.
CG3944-RA	GGATGGCAGCAGACGTACCACACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGATTCTGTCA	69	-	chr3R	11662077	11662146	11662077..11662146	CG3944-RA,	FBgn0017567,	ND23,	1	.
CG13058-RA	CAGATGCTGCCAAGGATTAAGCCAGTGCGAAACATTAGCTACGCCTCCCTGATCCCAGGACCTCG	65	+	chr3L	16322394	16322459	16322394..16322459	CG13058-RA,	FBgn0036610,	CG13058,	1	.
CG9102-RA	GCCCGAAAAGTCCAATGATTACTTGCCCCAAAGATTCTTGGCCCCAATTGGATAACCACCCTGAGCCC	68	-	chr3L	1141484	1141552	1141484..1141552	CG9102-RA,	FBgn0025525,	bab2,	1	.
CG13731-RA	CACCGTTCGCACCACCGTTCGTACCACTCCTCGTCCAACTTTGCCTCCTACCAAGCCACCAACTC	65	-	chr3L	17378368	17378433	17378368..17378433	CG13731-RB,	FBgn0036717,	CG13731,	1	.
CG5231-RA	GGCTGGATGTTTATGCGCACAACATAGAGACGGTTGAGAAGCTCACTCCCTATGTGCGCGACCGG	65	-	chr3L	20424232	20424297	20424232..20424297	CG5231-RC,	FBgn0029158,	Las,	1	.
CG4852-RA	GGCTTCTATTCGGCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCACGC	65	+	chr3L	5557691	5557756	5557691..5557756	CG4852-RA,	FBgn0029121,	Sras,	1	.
CG7125-RA	ACCAAGTTCCTGATCACCCAGATCCTGATTGCCCTCAAGTACCTGCATTCGCAAAACATAGTCCACT	67	-	chr3R	14130174	14130241	14130174..14130241	CG7125-RA,CG7125-RB,CG7125-RC,CG7125-RD,CG7125-RE,	FBgn0038603,	PKD,	1	.
CG6488-RA	TTCTGCAGACTCTGGAACGTGATCTACAGCTAGGAGTTGGCTCCGTCGAAACAGTGCTTGGGCAG	65	-	chr2L	11497596	11497661	11497596..11497661	CG6488-RA,	FBgn0032361,	CG6488,	1	.
CG13737-RA	TCGAGCGTGAGGTTGAAAACCCAGTCATCAGAGGAAAATAAACGTTAACACCGATTTGTGCGGCCAACA	69	+	chr3L	13872112	13872181	13872112..13872181	CG13737-RA,	FBgn0036382,	CG13737,	1	.
CG3017-RA	CCCTCGCCTGGAGATCTCGCTTGCAGCATAGTTGCCTCTTGGAAACACGACTATAAATGAAGCATTCGA	69	+	chr2R	19854140	19854209	19854140..19854209	CG3017-RA,	FBgn0020764,	Alas,	1	.
CG5550-RA	TGGTCGTCCAGCGAAGAGTCAGTGTGGAGGAGAACTTCTACCGCAATTGGACCTCTTATCAGACGGGTT	69	+	chr2R	12704335	12704404	12704335..12704404	CG5550-RA,	FBgn0034160,	CG5550,	1	.
CG7037-RA	TCTTTGACCGGAAGTCGCTCATCAACCATCGTTGGCTATCGCTTCCTCTGTTTTCTCTCCGCCGG	65	+	chr3L	8420869	8420934	8420869..8420934	CG7037-RA,	FBgn0020224,	Cbl,	1	.
CG12734-RA	AACCGTCGATCTTGGGTAGATGACGCCCGTACCAATTCCCAGTTCGTGATCGGTTCCGAGTCAGG	65	+	chr3L	3183635	3183700	3183635..3183700	CG12734-RA,CG12734-RB,	FBgn0035411,	Girdin,	1	.
CG32000-RD	TGCTTGGGTTGTTGATCATAAAGGACTGTCTAAAGAGCTTCCAACGCGAGCGATAGTACCTGGGGACAT	69	+	chr4	158473	158542	158473..158542	CG32000-RE,CG32000-RF,CG32000-RG,CG32000-RA,CG32000-RD,CG32000-RB,CG32000-RC,CG32000-RH,	FBgn0052000,	CG32000,	1	.
CG40109-RA	TCGTGGTACGACGTATTGGTTTTTAAAGGTATACTGCGATCAAGAAACGACGGATGGAGGTTGGACGGT	69	+	chrU	1352557	1352626	1352557..1352626	CG41520-RA,CG41520-RB,CG41520-RD,	FBgn0087011,	CG41520,	1	.
CG32698-RA	GGCGGACCGTTGTCGTATCGCTACCGTTTCCACGAGATCCACATGCACTACGGATTGAACGACCAATTT	69	+	chrX	9730728	9730797	9730728..9730797	CG32698-RA,CG32698-RB,	FBgn0052698,	CG32698,	1	.
CG5380-RA	ACTGGCCTTCAAGCAGATGTCTTGCTGCACGGTGAACGAGGTTCAGAAGTTCATCTCGGACTTGG	65	-	chr3R	18192184	18192249	18192184..18192249	CG5380-RA,CG5380-RB,	FBgn0038951,	CG5380,	1	.
CG11291-RA	TGGTGACGGTATCCGCAAAGATCTGAAAGAGGCCGGATTCTGTTCCGTGGTAAACGATCTGCAGCCAAA	69	+	chr2R	18099283	18099352	18099283..18099352	CG11291-RA,	FBgn0034713,	CG11291,	1	.
CG8073-RA	TCCAGTTCTTCGAAACGCTGACTGGATTCAAGTGGATGGGTAACAAGGCAATCGAGCTACAGCAGGCGG	69	-	chr2R	4995510	4995579	4995510..4995579	CG8073-RB,CG8073-RA,	FBgn0033377,	Pmm45A,	1	.
CG7357-RA	CACTGCTCCGATTGCACATTCGAGTCCATCACAAGGGCGAGAAACCGTACGTCTGCAAGTTCTGC	65	-	chr3R	13633981	13634046	13633981..13634046	CG7357-RA,	FBgn0038551,	CG7357,	1	.
CG13826-RA	TGAAAGGCTTCGGTGTTAATTACTTTATCCAAATGCCAGCACAAATGTTCCCAGTTCAGAACGCAATAT	69	-	chr3R	19048441	19048510	19048441..19048510				0	no match
CG32798-RA	GCCGGAGCTGAGTAAGATGGAGCAGCAGGTGCCGAATAAGATGAAGATGCAGGAGCTGAGTAAGATGGA	69	-	chrX	2171048	2171117	2171048..2171117	,CG34333-RA	,FBgn0085362	,Vml	1	.
CG12600-RA	TCGTCGGATGAGTCCACCATTACATCCTCCCAGACATCCACACTGACCAGAAACCAAGCACCCTG	65	-	chr3R	10526109	10526174	10526109..10526174	CG33967-RA,	FBgn0262127,	kibra,	1	.
CG18617-RA	CGTGTGCATGTCGGTCGTTAACTTCACCCACTTCAAGCGTTATGCCTCCATTTTCCTGGAGTTCGTGCC	69	-	chr3R	14217347	14217416	14217347..14217416	CG18617-RB,CG18617-RA,	FBgn0028670,	Vha100-2,	1	.
CG12653-RA	CTCCAGTTGCCACATGAAGTCCGAGTATGCGGCCAGTTATCCGGCTGATTTTGGTGCGGGAACAG	65	+	chrX	9590935	9591000	9590935..9591000	CG12653-RA,	FBgn0000233,	btd,	1	.
CG14065-RA	ACACCGCCGAGAACTCATCGGAATTGGACGACAACAACGACTTCGTGCCGGTACTATCGCATCAC	65	-	chr3R	24159859	24159924	24159859..24159924	CG42551-RD,CG42551-RG,CG42551-RH,	FBgn0261618,	larp,	1	.
CG13664-RA	GCCGAAACAGGCGACATCAATCTTTCATTGAGGGAAAAGAATGCACCAGTTGAGATTCATCCCGGCACC	69	-	chr3R	21053668	21053737	21053668..21053737	CG13664-RC,CG13664-RB,	FBgn0039294,	Cad96Cb,	1	.
CG8484-RA	GCGTCCATATCTTTGTCTGGTGTGTGGAAAGCGCTTTCTCACCGGATCCGTCTTCTATCAGCACCGTCT	69	+	chr3R	5602876	5602945	5602876..5602945	CG8484-RA,	FBgn0037751,	topi,	1	.
CG6776-RA	TCGTCCTGAACGCCAAGAATGTGCCCTATCACAGTGTCTACATCAATCTCACCGAGAAACCAGAG	65	+	chr3L	8512695	8512760	8512695..8512760	CG6776-RA,	FBgn0035904,	CG6776,	1	.
CG10045-RA	CCTGGAGTTCAAGAAGTACTTCGAATAAGCCTGATATTCACGTTTTTATACCCGTACATATGATGTAGT	69	-	chr3R	8193622	8193691	8193622..8193691	CG10045-RA,CG10045-RB,	FBgn0001149,	GstD1,	1	.
CG10093-RA	AAGATTGCCGAGGAAATCTTTTTGTCCCCAGAGTGCCTAAATAGGAGCTCGATATTTTCCAAGCCGGTT	69	-	chr3R	8064446	8064515	8064446..8064515	CG10093-RA,	FBgn0038007,	Cyp313a3,	1	.
CG5320-RA	TGAGCGCGAGATGTCCTGGATTGCCGATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGC	66	-	chr3R	19763970	19764036	19763970..19764036	CG5320-RF,CG5320-RA,CG5320-RB,	FBgn0001098,	Gdh,	1	.
CG11133-RA	CCTAGCAAGGCGTCTTGTTGAAGCAACCTTAGTCAAAAGAAGTGAGAATGCTGCCGAAATGATCCGGGA	69	+	chr3L	22897256	22897325	22897256..22897325	CG11133-RA,	FBgn0037205,	CG11133,	1	.
CG31857-RA	CAGTACGGATGAGGACTATGAGGAGGCCATAGATCAGTTCTCGCCAACGATATACACCACTCGATCGGC	69	-	chr2L	12516894	12516963	12516894..12516963	CG42281-RJ,	FBgn0259176,	bun,	1	.
CG9334-RA	AAAAAGATGGTAGGATTCACTCCAAAACTTATCAATATAAATGTGCATCTAAGGCTTCCCAAGTTCAAA	69	-	chr2L	20837109	20837178	20837109..20837178	CG9334-RA,	FBgn0028986,	Spn3,	1	.
CG1244-RC	GAGATACTAGTTACGGATTTTAGTTACATACGTTTTGGAGTGTGCACATAAGTTGAAGTTGTAGCTACT	69	+	chr3L	2641339	2641408	2641339..2641408	CG42245-RA,CG1244-RC,CG1244-RA,CG1244-RB,CG1244-RD,CG1244-RF,CG1244-RE,CG1244-RG,	FBgn0250911,FBgn0035357,	CG42245,MEP-1,	2	.
CG5102-RA	TCCACGTCCTTGCCTAAGCAAACGAAAAAGCGGAAAGAGCACACAGCCATTAGCAATTCGGTTCCG	66	+	chr2L	10391459	10391525	10391459..10391525	CG5102-RA,	FBgn0000413,	da,	1	.
CG5703-RA	AGCAAATTTTCAGCCTTTTCATTATTTTGGAAACGCCAGAATGCTGACAAACTGTGCCTCCAAAACA	67	+	chrX	17526414	17526481	17526414..17526481	CG5703-RA,	FBgn0030853,	CG5703,	1	.
CG6659-RB	CGGCGCGATGATGGAATGCTGGAATCGTGTTGTGTTGTACGTAGCTGTGTGAGCTGTGTGACTAGGATT	69	-	chrX	18547930	18547999	18547930..18547999	CG6659-RA,CG6659-RB,	FBgn0030946,	CG6659,	1	.
CG6650-RA	GCTGCTTCAACAGCTTCGACACTTTGTACTGCCCTACGTAGACTCCCTGGGAATGAACGAACAAGAGCT	69	+	chr3L	14026422	14026491	14026422..14026491	CG6650-RA,CG6650-RB,	FBgn0036402,	CG6650,	1	.
CG1818-RA	AGTGGAAATAACTTCGTTAGCCCTCTACTACCTTTTTAACAGCCAAAAGTCACTATGAAAGACGCAAAG	69	+	chr2R	5472237	5472306	5472237..5472306	CG1818-RA,	FBgn0033428,	Updo,	1	.
CG16724-RA	AGAGGGACAGCAGAAAGAAGGAGCACAAGATTCCGTACTTTGCAGACGAGGTTCGAGAACAGGATCGGT	69	-	chr3L	16583726	16583795	16583726..16583795	CG16724-RA,CG16724-RB,	FBgn0003741,	tra,	1	.
CG12702-RA	TGCAGACCCGGTGCAAGGATCTCAAACAGCAGAAGGTCGAACTGAAGAGCAATATGACAATCCTGCTCA	69	-	chrX	19653928	19653997	19653928..19653997	CG12702-RA,	FBgn0031070,	CG12702,	1	.
CG32563-RA	GCCGGCGCATATAAAAGCTGTGATCCCCTCGAAGAATCGGCCAAACAAAATGCAGGTGCTTAATGTGCA	69	+	chrX	17102539	17102608	17102539..17102608	CG32563-RA,	FBgn0052563,	CG32563,	1	.
CG5150-RA	GGCCTGCGGTGAGTTGTCAGATGGACTCCAGGACATAGCTGTCCAGTTGATTCACGGCGAGGTGG	65	+	chr3L	5589326	5589391	5589326..5589391	CG5150-RA,	FBgn0035620,	CG5150,	1	.
CG9967-RA	TTAATTGTGCAATTGTTTGTTTAAAGTGCATGTGAACAAGATACGCTAATAAAAGTCTTCGGATCGGTG	69	-	chr2L	2357101	2357170	2357101..2357170	CG9967-RB,CG9967-RA,	FBgn0031413,	CG9967,	1	.
CG1236-RA	AAACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAGGTGTACGTAACCAGGCC	69	+	chr3R	1562542	1562611	1562542..1562611	CG1236-RA,	FBgn0037370,	CG1236,	1	.
CG4448-RA	TTCTTGTGGAATAAAACGAGTTGGTTACAGTGTAATGCCTTTACCTGCATCGTCTACTGGTCACAGCTA	69	-	chr3R	19080990	19081059	19080990..19081059	CG4448-RA,	FBgn0039067,	wda,	1	.
CG8129-RB	AAATCCACATCATCGGATCTATATGGCATGGAGTTATATCTGAAAAAGGATTTCCTACAATATACAGGC	69	+	chr3R	5191477	5191546	5191477..5191546	CG8129-RB,	FBgn0037684,	CG8129,	1	.
CR30009-RA	GCCAATAGCAAGGCGTGTTTTTGTTGCTAAATGATTATTTATGTATACGCGAGGACCCTTGAGTTTTAA	69	-	chr2R	6150217	6150286	6150217..6150286	CR30009-RA,CR30009-RB,	FBgn0050009,	CR30009,	1	.
CG9913-RB	CAAGACCGAACTCCGTTACCTGCGCGAACAGATTGTTCTCACCTTCAAGCAGCAGATGAAACTGCGCA	68	-	chr3R	9939373	9939441	9939373..9939441	CG9913-RB,	FBgn0038205,	Kif19A,	1	.
CG8840-RA	GTAAGATTTCTATTTGAACTCTGATCAAGTTCCGTACTTGCAGCTGAATTCTTTGATGGCTTCCATGGA	69	+	chr2L	3410634	3410703	3410634..3410703	CG8840-RA,	FBgn0031531,	CG8840,	1	.
CG5440-RA	TCTCGAAGATTCTGCTATCAATTTGCTCCCTACTCACCGACTGCAATCCCAAGGATCCGCTGATGGCCA	69	+	chr2L	1334623	1334692	1334623..1334692	CG5440-RB,	FBgn0031331,	CG5440,	1	.
CG12506-RA	TCAGTTCCTTACCATTCCCTTTATCAATACAAGTTCTTGAAATAAATTGATATCAGTACTCTAAT	65	+	chr2L	773955	774020	773955..774020	CG12506-RA,	FBgn0031276,	CG12506,	1	.
CG30484-RA	ACTGATGAAGGAGGTTGCCATTCGCGAAGACTTTCGACCCAAAAAGAAACCACGCGATTTTGTGACGGA	69	+	chr2R	9736570	9736639	9736570..9736639	CG30484-RA,	FBgn0050484,	CG30484,	1	.
CG5089-RA	GCCAAAATCGTCGCTACGCAGACCGATATACCTTCGACGACCAGACTCAAGCACAAATCCAGGGCATCA	69	+	chr2R	12486584	12486653	12486584..12486653	CG5089-RA,	FBgn0034144,	CG5089,	1	.
CG8416-RB	CCAAGGAGGTCGTAGGCGTCAAGATGAGAGTTATGTTCCCATTAAATCTATCAAATACAGAGAGACCAG	69	+	chr2R	11994185	11994254	11994185..11994254	CG8416-RB,CG8416-RC,CG8416-RD,CG8416-RF,CG8416-RG,	FBgn0014020,	Rho1,	1	.
CG14419-RA	TTGTCTAGTCGAGGGAAACCAAATCAGACGAGAATGCGCGCTTCCATACTGTTTTTCGGCCTGCT	65	-	chrX	2779872	2779937	2779872..2779937	CG14419-RA,	FBgn0029639,	CG14419,	1	.
CG13784-RB	CACAGCTGACTTCCTTTCTTTCCTTCCTGCATTACACTGTTCAACAAACAATAGTTATAACCGCAAACG	69	-	chr2L	7219306	7219375	7219306..7219375	CG13784-RB,	FBgn0031897,	CG13784,	1	.
CG5077-RA	TCCCAGCAATCCAAGTCTCTCCCGCAGACAAAGTCCATATGCAAATCTCTTCCCTTTTAGCCTTGGGCA	69	+	chr3R	16149463	16149532	16149463..16149532	CG42668-RK,CG5077-RH,CG5077-RE,CG5077-RF,CG5077-RG,CG42668-RL,CG42668-RM,CG42668-RN,	FBgn0261550,	CG42668,	1	.
CG18258-RA	GCGGAGCAGTTATGGAACACTACCGGATTTTATCAGGATCGACCCACTGTCTTGTTCATCACCGGCTGG	69	+	chrX	17106933	17107002	17106933..17107002	CG18258-RA,	FBgn0030827,	CG18258,	1	.
CG32737-RB	CAAAACAAACACACAGAGAGAACAATTAGTTTTCGTTTCTTGATTCGTTCGGAATTAATTTTCGTGGTT	69	+	chrX	6774285	6774354	6774285..6774354	CG33692-RA,CG33692-RB,CG33692-RC,CG33691-RA,CG33691-RB,CG33691-RC,	FBgn0064121,FBgn0064122,	CG33692,CG33691,	2	.
CG7212-RA	GCCGCATGAAGAACTCCGATTCGGTGAGGCTTATGTTCAGCATCGGTAAGCTAATGAGCCTGCTGCG	67	-	chr3R	14006950	14007017	14006950..14007017	CG7212-RA,	FBgn0261532,	cdm,	1	.
CG18810-RA	GTGGCGTCTGTGTCCTGATGCGAGATCATCACTGCTTCTTTACTGGTTGCTGCATCGGTCATGAGAACT	69	+	chr2L	20649382	20649451	20649382..20649451	CG18810-RA,	FBgn0042133,	CG18810,	1	.
CG1874-RA	AGCGTCAGCTTCACAGTTCATCGTTTGTGTCCAACATCTGCTACGCTTTTGACCAGTTCTTCGCCAGCA	69	-	chr2R	5463690	5463759	5463690..5463759	CG34407-RC,CG34407-RD,CG34407-RE,CG34407-RG,CG34407-RF,	FBgn0085436,	Not1,	1	.
CG12022-RA	CGGCGAACGCATGTCCAAGGACCAAAAGGAGCTGTACGTTAAGTTTTTCGAGGACAATCCATGCATGCT	69	+	chr3L	1804420	1804489	1804420..1804489	CG42676-RA,CG42676-RC,	FBgn0261562,	CG42676,	1	.
CG32703-RA	TGCGGATGTGCTTAACTATGCGAACGTTAGCACCCACTTGAAAAAGCTGCAGCGGTCAAAGGAGAGTGA	69	-	chrX	9156061	9156130	9156061..9156130	CG32703-RA,CG32703-RB,	FBgn0052703,	CG32703,	1	.
CG7837-RA	AGGATCTCGAGGAACTGAGCTCGGATGTACCACCGAAACTAGCCCCGTTCCGCAATACAACATGCAAC	68	-	chr3R	25622825	25622893	25622825..25622893	CG7837-RA,	FBgn0039696,	CG7837,	1	.
CG3915-RA	TCAAAGGACAGGGGGAATAATCTCCGCTTCTGGCAGGATACGCCATGAAAAATGCAATATGCAGCTGGC	69	-	chr2R	8944323	8944392	8944323..8944392	CG3915-RB,	FBgn0033791,	Drl-2,	1	.
CG12691-RA	AGGGTCGCGATGAAGAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCCGCAAG	69	+	chrX	4160562	4160631	4160562..4160631	CG12691-RA,	FBgn0029701,	CG12691,	1	.
CG16840-RA	TGCCCGAGGAATCCTGCGAAAATCTGGAGGAGAAGTCACCCATTGCATTTCAAATCACAATGAAGCGCA	69	-	chr2L	11010050	11010119	11010050..11010119	CG16840-RA,	FBgn0032329,	Art8,	1	.
CG16784-RB	TCGCCTAACGAATTTTTTGATTGGACCAATGATCAGCGAAGACTCAGCCAACCTCTTAAGCACGCGCGT	69	-	chr2L	20073827	20073896	20073827..20073896	CG16784-RC,	FBgn0003141,	pr,	1	.
CG3278-RA	CGGAGCACGTGCGAAATGAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACTGCCGTGCCAA	69	+	chr2L	22250630	22250699	22250630..22250699	CG3278-RA,	FBgn0032988,	Tif-IA,	1	.
CG10565-RA	AGGCGTTAAGGAGGTCAAGAAGAATGAGCTCTGGAGCAATGAGAACGTGCAGTTGCTTATCAAGGCGGT	69	-	chr3L	21127071	21127140	21127071..21127140	CG10565-RA,CG10565-RB,	FBgn0037051,	CG10565,	1	.
CG9253-RA	GGCTTTGTGTCAAGCATGTGACGAATTGAAGTGGAAGGCGCCTTCGAAGATCCAACGTGAGGCCATTC	68	+	chr2L	21143574	21143642	21143574..21143642	CG9253-RA,	FBgn0032919,	CG9253,	1	.
CG14340-RA	CTACCACCTCACGTTGCAGTTCCAGCACGAGTTGATCAAGAGCCATCGCTTGATCCAACTGGTGC	65	+	chr2L	1113412	1113477	1113412..1113477	CG14340-RA,	FBgn0031302,	CG14340,	1	.
CG9471-RA	CCTGGAGCACAGGTGAGACTGCACTTTTGCAAACCAACAACTGGACTAAACGCATTTCAATCGACGGGA	69	-	chr3R	5597110	5597179	5597110..5597179	CG9471-RA,	FBgn0037749,	CG9471,	1	.
CG16833-RA	GGTGATCACACTGCATATTCCTTACACCTGAGTCCAGAACAAGACTTTCTTCCAGCGTCAGGTGGGTCT	69	+	chr2L	10994857	10994926	10994857..10994926	CG16833-RI,CG16833-RJ,CG16833-RK,CG16833-RL,CG16833-RM,CG16833-RN,	FBgn0026147,	CG16833,	1	.
CG6510-RA	AGTGTCATACCGATTTGACAAGCTCTTTCCGTTTCCTTTTCGCGTGAACGTCCAACATGAGAGCC	65	-	chr2R	13434922	13434987	13434922..13434987	CG6510-RA,	FBgn0010409,	RpL18A,	1	.
CG4341-RA	ATGAATTGGCTTCTCGAGATTGTTTTGTCCGTTGTGTGTACATTTTAGTTAAGCGAATAAAGATACCGA	69	+	chr2L	957962	958031	957962..958031	CG4341-RA,CG4341-RC,	FBgn0028481,	CG4341,	1	.
CG31955-RA	CCGCGGTGTCATAAGTCCATTTCGTCCACCAAAGTTGTGAAAAGCTTTGCATAGTGACGAATGCAAGCC	69	-	chr2L	3712253	3712322	3712253..3712322	CG31955-RA,CG31955-RB,	FBgn0051955,	CG31955,	1	.
CG32824-RA	CCGACTGGGTGGTGAAATCAAAAATCAGTATCAAAACCCGGTCCTCTAGTTTCTCATGGAGGCGCTGGG	69	-	chrX	20034045	20034270	20034045..20034074,20034230..20034270				0	no match
CG6567-RA	GGGTGTCAAGGGCACATTTCATCCATTGAGGAACACACTGCACGAACTGAAAACTGCCTCCATCACGGA	69	-	chr3R	6679439	6679508	6679439..6679508	CG6567-RB,	FBgn0037842,	CG6567,	1	.
CG11983-RA	GATCATGACCCCAGAGAATAAGCCCCTAGCCAATCAAGAATCTCTCTACTCCGAAACCGAAGATGCTGT	69	+	chr3R	4834972	4835041	4834972..4835041	CG11983-RA,	FBgn0037654,	CG11983,	1	.
CG13656-RA	TGTGTATCATGCTGACCACATCCGAGAAAAAATGCTACTCACTCTGCCGTTTCTGGATCAGCAGGGGTT	69	+	chr3R	21095602	21095671	21095602..21095671	CR13656-RA,	FBgn0039307,	CR13656,	1	.
CG6798-RA	ATACTCGTGTCGTTGACCGTGTTTTTCCTGCTCTTGGCCGAAATTATCCCCCCAACCTCGTTGGC	65	-	chr3R	20337298	20337363	20337298..20337363	CG6798-RA,CG6798-RB,	FBgn0004118,	nAcRbeta-96A,	1	.
CG32627-RA	ACATGGGACGAGCATTTTGTGAGACACTTCTGGACTACTGCGATGAGAATCCGAACAAAGTAAAGCGGC	69	+	chrX	13607466	13607535	13607466..13607535	CG32627-RA,CG32627-RB,CG32627-RC,CG32627-RD,CG32627-RE,CG32627-RF,CG32627-RG,	FBgn0052627,	NnaD,	1	.
CG5559-RA	CCGGCACGTTTGCATCGGAGGAAGTAAGCTACATTTGGCCAACTTGGATCTCAGCGAGCAATTGAAGTT	69	+	chr2L	17602296	17602365	17602296..17602365	CG5559-RA,CG5559-RB,CG5559-RC,	FBgn0261089,	Sytalpha,	1	.
CG14141-RA	CAGAGTGGTGCAGACTCTGGCCGAGTGGATCAGTCACCGATCAAACGAGATTCGCACAGCAACGC	65	+	chr3L	11194418	11194483	11194418..11194483	CG14141-RA,	FBgn0036146,	CG14141,	1	.
CG9430-RA	GCCGGCATACGCATTTTACTCTCGTCGATGGTGGGATTCGTCCTGATGTTTGGCCTCCAGATAGCAAGT	69	-	chr2R	2606144	2606213	2606144..2606213				0	no match
CG8506-RA	GGCCATGGAAGCCTACGAACGAAATAACATGGCAGCTAACCAATCCAACGTTGGAGTTCCTGGTCCGG	68	+	chr2L	8161336	8161404	8161336..8161404	CG8506-RA,	FBgn0261064,	Rbsn-5,	1	.
CG13165-RA	AGTTCCCCTTCATCTCGTACTACCTGATCAATACGCTGCAAACGGATCCTTCCAGCTTCTATGCT	65	+	chr2R	8184378	8184443	8184378..8184443	CG42700-RC,CG13165-RA,	FBgn0261611,	CG42700,	1	.
CG8086-RA	TCGCGACTAATCCTGGCAAGGACTGTATGCACTACGCGCTATTAGCACCGCAATAAAGTGAAGTTTTTT	69	-	chr2L	8257157	8257226	8257157..8257226	CG8086-RA,	FBgn0032010,	CG8086,	1	.
CG3009-RA	AGGGAGTCGCAATCCTAGCTAACTTAGCTGCATGTGTGATTGCCATTAACGTTATGCATGTACCGTGTT	69	-	chrX	4552672	4552741	4552672..4552741	CG3009-RA,CG3009-RB,	FBgn0029720,	CG3009,	1	.
CG10128-RD	CGGGCTGTAAAGGAGCATACGACTGAAATATTGTTTTGGTGAATCCTATCCCATCTAATGCATTTGGTT	69	-	chr2R	10489788	10489857	10489788..10489857	CG10128-RG,CG10128-RC,CG10128-RA,CG10128-RE,CG10128-RD,CG10128-RB,CG10128-RF,	FBgn0003742,	tra2,	1	.
CG3624-RA	AGACGTGGTGGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGGTGCAGCC	66	-	chr2R	18281982	18282048	18281982..18282048	CG3624-RA,	FBgn0034724,	CG3624,	1	.
CG32017-RA	TATAAGTCAGCAAGTAAACATCATCACAAAAGTTCTGAAGTTGTCTACGCATGGTTGGGGTTTTTGATA	69	-	chr4	1158573	1158642	1158573..1158642	CG32017-RB,CG32017-RC,	FBgn0052017,	CG32017,	1	.
CG6568-RA	GCACTTTGAGCTGAGCGAATCAGATGTCGAGGACACATTTAAGCGCACCCTTATCAAGCTGGCCCGT	67	-	chr2R	13293731	13293798	13293731..13293798	CG6568-RA,	FBgn0034210,	CG6568,	1	.
CG11308-RA	TCGCCATGCCGAGAATGAGCTGAACACCCAAAACGCCTTAAATCAATACTACCTGAGGTGCAACCCCAA	69	-	chr3L	21399194	21399263	21399194..21399263	CG11308-RA,	FBgn0002842,	sa,	1	.
CG10654-RA	AGCGAACCGAAGTCTCAAATATCACATGAGAAGGACGCACGAAAGGTATCACGAGTCAGAGTCCCCGGA	69	-	chr3L	12499189	12499258	12499189..12499258	CG10654-RA,	FBgn0036294,	CG10654,	1	.
CG5125-RA	TGTGTTCTCCATCTGATGCAACCAATCGGCTTATAGCTGTCTGAGACATAACACTTAACATCGACGGCC	69	+	chr2L	7382528	7382597	7382528..7382597	CG5125-RA,	FBgn0002938,	ninaC,	1	.
CG10082-RA	TGTGATTCAAGCAAACCTATTTAACAACCGGATATAGACCTTAACTTTTAACTTTTAACCGACGCGTAA	69	+	chr2R	17544746	17544815	17544746..17544815	CG10082-RA,CG10082-RB,	FBgn0034644,	CG10082,	1	.
CG30141-RA	AACCAAATGGCTAAATGCTCGGGGTGAAGTCGATCTGAAATCAATGAAAGCAACCAGTGAGACAGCGGT	69	+	chr2R	16392972	16393041	16392972..16393041	CG30141-RA,	FBgn0043535,	Obp57a,	1	.
CG9284-RB	AGAGGAGGCGTCAGAGAAACGAGCAGAGGACATAAGGCTATCCGTGTATTTTTGGATCACCACGGTGGT	69	+	chr2R	17691280	17691349	17691280..17691349	CG9284-RA,CG9284-RB,	FBgn0046297,	CG9284,	1	.
CG8854-RA	GATTTGGGTGCTTGGGTTAGGCTAACTACCAACACGTTTGCACCAATCGCGAACAGAAACCTTATTGTT	69	-	chr2R	8112110	8112179	8112110..8112179	CG8854-RB,	FBgn0033702,	CG8854,	1	.
CG10055-RA	TGGCGATGATGACTTGGACCTTGATAACGATACTTCTGGACAGGAGGACGAGACTACCACTGATGATGA	69	-	chr3R	3010577	3010646	3010577..3010646	CG10055-RA,	FBgn0037482,	CG10055,	1	.
CG12636-RA	GGGGAACAGGACGCACGATGGCTCGGAGACACCAGAGGTGAGACAAAAAGCGGACTTTATTGACTATGA	69	-	chr2L	14725804	14725873	14725804..14725873	CG42685-RA,	FBgn0261571,	CG42685,	1	.
CG30092-RC	GCTAACAGTCCGAACCACAAAATAACCCCAGACTGAGTCTTCGAATGAGCGAGACTCTATGCCAGCACA	69	-	chr2R	18610197	18610266	18610197..18610266	CG30092-RC,CG30092-RL,CG30092-RG,CG30092-RH,CG30092-RJ,CG30092-RK,	FBgn0028371,	jbug,	1	.
CG7202-RA	TTATCAGCACACAACAAAATTTCGGGAATCATGTTCGAATGCATAAGTTTCTTGTTCCTGGCTGC	65	-	chr3L	21485771	21485836	21485771..21485836	CG7202-RA,	FBgn0037086,	CG7202,	1	.
CG5469-RC	GCTATGTAGAAGTGCTTTAACCCATATATTCAGCGGTATTTGTCCCTTATATTATAACAGAGCTGTTGT	69	-	chr2R	14545981	14546050	14545981..14546050	CG42306-RA,CG42306-RB,CG5469-RD,CG5469-RB,CG5469-RC,	FBgn0259202,FBgn0034372,	CG42306,Gint3,	2	.
CG11176-RA	AGTTCCACTGCCACAAAGTAACAAAGAGAAGACTGAGCCGAACAACCTGCCATTTTGATACCGACGCCC	69	+	chrX	13511293	13511362	13511293..13511362	CG11176-RA,CG11176-RB,	FBgn0030503,	Tango2,	1	.
CG8522-RB	GGCTTCTACCAAGTGCCAGGTGAAGTGCTCGAGAAGTTCCAGACCGATTTGAACTCGTTGCGCAACATT	69	+	chr3L	19791316	19791385	19791316..19791385	CG8522-RA,CG8522-RB,CG8522-RC,	FBgn0261283,	HLH106,	1	.
CG8468-RB	GTTTCTATAAGCTTTAGTGGAGGAGCCCATATGTGGACTAGAATTTAGCAGCTAGACTAAGCGGAGGAT	69	+	chr2R	10117399	10117468	10117399..10117468	CG8468-RC,CG8468-RA,CG8468-RB,	FBgn0033913,	CG8468,	1	.
CG9983-RB	TCGCACCTGAGGATGGAATGGATGTTGAACGGTTTCCCCTCTGCACCATCGTAAATATACGACTTTTAT	69	+	chr3R	24431367	24431436	24431367..24431436	CG9983-RB,CG9983-RF,	FBgn0001215,	Hrb98DE,	1	.
CG13949-RA	TCCGTTTGCAAGGACGCACAATGGACCTCATCAAGGAGATCAACGACAAATACATGGCCCTCGAG	65	+	chr2L	855529	855594	855529..855594	CG13949-RA,	FBgn0031288,	CG13949,	1	.
CG3955-RA	GGCCTTCGGGTCACCTCACAGAATTTACGGACACTCAGCGCTCTCAAAGATGCTCCACACTGAACTCAA	69	-	chr2R	9015628	9015697	9015628..9015697	CG3955-RA,	FBgn0033793,	CG3955,	1	.
CG16771-RA	TGGAACGCCGATAAATAGCCAAAAGTTTCGAAAACTCAGCGATGTGGACATGACGGAAGTGCAGCTGAA	69	+	chr2L	19427261	19427330	19427261..19427330	CG16771-RA,CG16771-RB,CG16771-RC,	FBgn0032779,	CG16771,	1	.
CG7066-RA	CCGTCCTCGCCTCAAGGAGTTGTCCACTCAGTTGTTAAGGGACCTGGATCGATTTCAGAAGCGCG	65	+	chr3L	8297865	8297930	8297865..8297930	CG7066-RA,	FBgn0087039,	Sbp2,	1	.
CG30491-RA	GCCTTTGTTTTGGCCCTTTGTTAAGACTCCGAGAAATGGTGCTCAGACCTCGTTGTATGTTGCTCTGGA	69	+	chr2R	3543988	3544057	3543988..3544057	CG30491-RA,	FBgn0050491,	CG30491,	1	.
CG12026-RB	AGGACGCCAACCAATTAAGCTTAGCACGTGCAAGAACCAGGGGTGAAACTCAGCTTAAAGTTTTCCATA	69	+	chr3L	1891089	1891158	1891089..1891158	CG12026-RB,CG12026-RA,	FBgn0262624,	Tmhs,	1	.
CG13651-RA	TCAACTCCAAACTCACCCCACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGAGGAC	65	+	chr3R	20964477	20964542	20964477..20964542	CG13651-RA,	FBgn0039283,	danr,	1	.
CG18131-RD	CCACCCGGGATACGAACGATCCGTCAAGTCGGTGCCTCTATATGAAAGAAGACAAGCTACTCCGGAACA	69	-	chr2L	1499585	1499654	1499585..1499654	CG18131-RE,CG18131-RB,CG18131-RD,	FBgn0031343,	CG18131,	1	.
CG12900-RA	ACGCACTGGCCTTGCAGGACTACACCCTAAAGGCTTTTAGTGCCGGTCTTGTCTATTACTGGGCG	65	-	chr2R	6265656	6265721	6265656..6265721	CG12900-RA,	FBgn0033515,	Ir47a,	1	.
CG14218-RA	CTTCTCCCCCACCAAGTGCTTCGCGATTTTTGGTCAACTACGAGAGCGATGACGACTTTGGGCAG	65	-	chrX	19474749	19474814	19474749..19474814	CG14218-RB,CG14218-RC,	FBgn0031031,	CG14218,	1	.
CG1210-RA	TGTAAACAGTGTAACTATGTACAGAACTATGTGAGCTATATGCACACGGCAAAAAGACCCTAAGTCGTG	69	+	chr3L	144366	144435	144366..144435	CG1210-RB,CG1210-RE,CG1210-RD,CG1210-RA,CG1210-RH,CG1210-RF,	FBgn0020386,	Pdk1,	1	.
CG13069-RA	GAATACCACGGAAATTTTGCGGCTCCCTACGTGGCATCTCCCTATGTGGCTTCTCCCTACGTGGC	65	+	chr3L	16258661	16258726	16258661..16258726	CG13069-RA,	FBgn0040798,	CG13069,	1	.
CG12530-RB	GCCTCCAGAGCTCTAATCCCTACCCGGTATTTTGGTCGGTTTCTATGTTTGGTCCACTGTGACCAGGCG	69	+	chrX	19592942	19593011	19592942..19593011	CG12530-RA,CG12530-RB,	FBgn0010341,	Cdc42,	1	.
CG9748-RA	CGGTCGCCTAGAGGACATGATCACACGCGGAAAGGTGGGACTGGAGAACATTCGATTCCTTGTACTGG	68	-	chr3R	4482608	4482676	4482608..4482676	CG9748-RA,	FBgn0263231,	bel,	1	.
CG14243-RA	ATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGACGAGCTCCACCAACAAACCAGAGGTG	65	+	chr3R	22466306	22466371	22466306..22466371	CG14243-RA,	FBgn0039444,	TwdlD,	1	.
CG8536-RA	TGCCTTATCGATCAATATTTGGAGGTGTTTCCGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGT	69	+	chr2R	10147703	10147772	10147703..10147772	CG8536-RA,	FBgn0027538,	beta4GalNAcTA,	1	.
CG4496-RA	AGGCACTCACACGATCCACAATTCATTTGCATGATCTGTCACTTGGGAGCACCTTTGGAGCAGGACTCT	69	-	chr2L	7186623	7186692	7186623..7186692	CG4496-RA,	FBgn0031894,	CG4496,	1	.
CG5732-RA	TGGGCTGCAAGAACAAGTGGGACCCCTTATCCCTGTCCGTTTGGAAGAAGTTCCTCGAGTCTCAG	65	+	chr3R	18041040	18041105	18041040..18041105	CG5732-RB,	FBgn0038934,	Gld2,	1	.
CG6615-RA	TCCCTGTAATGGAAGTGACTTCCCTCTTGAAATTGTTTCTTATGAAACTAATCCACGAATTCCTCAGAA	69	-	chr3L	17034150	17034219	17034150..17034219	CG33522-RC,	FBgn0261872,	scaf6,	1	.
CG3988-RA	GTTGAGTACGCTATTCTATCTAAAAACATTCCACTACCTCAGGGTATACAGATGGAGAAGAAGGCTGGC	69	-	chr2R	19935039	19935108	19935039..19935108	CG3988-RA,	FBgn0028552,	gammaSnap,	1	.
CG30337-RB	ACAGTGCCCTCGCAAAGCCACAGATACACACATCTTGGGATGCAGATGAGGCAAAAGGATTTTACACGT	69	+	chr2R	5424679	5424748	5424679..5424748	CG42344-RI,CG42344-RJ,CG42344-RK,CG42344-RL,CG42344-RD,CG42344-RE,CG42344-RG,CG42344-RH,	FBgn0259246,	brp,	1	.
CG7231-RC	TATTCCTCAAACAGTCGGATATGATGAAGGTATGGGGCACAAATCTCACTGCCATTACCTGGGCC	65	+	chr2L	7985654	7985719	7985654..7985719	CG7231-RC,CG7231-RD,CG7231-RE,CG7231-RF,	FBgn0031968,	CG7231,	1	.
CG9418-RA	CAATTTTTAAATGCAATAGAGTGTACGGTTAAACAGAAATGACGGAACCAACGAGCAAGACACCGGATG	69	+	chr2R	17033767	17033836	17033767..17033836	CG9418-RA,	FBgn0026582,	CG9418,	1	.
CG8960-RA	ACCAAAGGGAACCACTGACATCCCAGCATGTCAATGACAATGTGCCAATTGAGCCCAGCAAAGCAAAAT	69	+	chr3L	2197897	2197966	2197897..2197966	CG8960-RA,CG8960-RB,	FBgn0035315,	CG8960,	1	.
CG3891-RA	AGTCGCTCTGTGTCCATTTGTCCTCAATCACACCACTTTAGTCGGCTCACATAGTTTTCATTTTTTTTT	69	-	chr3L	9433660	9433729	9433660..9433729	CG3891-RA,	FBgn0035993,	Nf-YA,	1	.
CG4841-RA	GGGCAAGTCCATTGAGCCATATGGCGTTGATTACATCCTAAACAAACTGGGCTTCAGCCATGCACG	66	+	chr2L	16916323	16916389	16916323..16916389	CG42555-RF,CG42555-RG,CG42555-RH,CG42555-RI,	FBgn0261671,	tweek,	1	.
CG6417-RA	CCAAGCTGTGCTTCCGATAACCAGAGACCTTCATCCAAACCATCAACCGCAACCTGAGAGTCCGAGG	67	+	chr2L	12451833	12451900	12451833..12451900	CG6417-RA,	FBgn0032435,	Oatp33Eb,	1	.
CG5701-RA	ACATAACAAACCTCAAGGGCACGATTTAGAGTGGTCGGGGAGATAAGGGTTGGAAATGGAGGGGG	65	+	chr3L	20374976	20375041	20374976..20375041	CG5701-RA,	FBgn0036980,	RhoBTB,	1	.
CG8182-RB	ACGCTGTGAATTCGAACATATGTCTGGACGATTTGCTGCAGAACAACGAAAAGCCCTATAACGCCGGCT	69	+	chr2R	11402149	11402218	11402149..11402218	CG8182-RA,CG8182-RB,	FBgn0034025,	GalNAc-T1,	1	.
CG4619-RA	TGTCGTCGTAAAACGACTCATGACTCTTCTCAAGCCTGGAGACCTGCGCTCCAAAGACTTGGCCA	65	+	chr2L	9939901	9939966	9939901..9939966	CG4619-RA,CG4619-RB,	FBgn0032166,	CG4619,	1	.
CG12986-RA	GATGTCGGGTGGCCTGTTCGTACCATCGCCTGAGGATATTCCACTTCACCCAGGACGCGACTGCC	65	-	chrX	17713291	17713356	17713291..17713356	CG12986-RA,	FBgn0030868,	CG12986,	1	.
CG14126-RA	ACAGCCCAAGAGAGCGATAACAGCAAAGTTAATGCCATTAGCCCCAGTCCACAGAACAGTCCCGC	65	-	chr3L	11930403	11930468	11930403..11930468	CG14126-RA,	FBgn0036223,	CG14126,	1	.
CG13776-RA	CGGCAGCCACTTTCGGAAACATGCTATTAAGACCAAGTACGGTATTGATCGTGTGGTCGAGGATCTCAT	69	+	chr2L	7014053	7014122	7014053..7014122	CG43322-RA,	FBgn0263027,	CG43322,	1	.
CR32910-RA	CACATGATGATAATTGAAAGTTCTTGATAGGAATTGCCGGCTGACACATATATGAAGCTAATTCTAGTT	69	+	chr3L	8595050	8595119	8595050..8595119	CR32910-RA,	FBgn0060291,	snoRNA:U49:66Db,	1	.
CG40486-RA	GGCCATGTGATCCTCATTAACAGCCTAACGGGCCGTAACATCATCAATCCACCTGGTGACGAGCTG	66	-	chrX	22361327	22361393	22361327..22361393	CG40486-RA,CG40486-RB,	FBgn0069972,	CG40486,	1	.
CG10007-RA	CCGAGCATTGATCCATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTGCGGCT	69	-	chr3R	7799315	7799384	7799315..7799384	CG10007-RA,	FBgn0260744,	Tango9,	1	.
CG9325-RD	ACGCCAGTGAGGATAGAAGATCCACTCCAGTTTGTGCCTGCAGGAACCAATCCAAGGGAATTTAAGCGT	69	-	chr2R	15295999	15296068	15295999..15296068	CG9325-RD,CG9325-RA,CG9325-RI,CG9325-RK,CG9325-RL,CG9325-RM,CG9325-RN,CG9325-RO,	FBgn0004873,	hts,	1	.
CG7955-RC	TGCCATCGCTAGGGCCATACTGAAGAACACCCCCATTCTGATCTTTGACGAGGCTACAAGCAGTCTGG	68	+	chr3L	1622580	1622648	1622580..1622648	CG7955-RA,CG7955-RB,CG7955-RC,	FBgn0035244,	ABCB7,	1	.
CG5172-RB	ATGCTGACTTGTGTTCCATGGCATAGAGATAGAGACAATCCCTAGATTCTTCTATTTTTCTTCTATCGA	69	+	chrX	17116553	17116622	17116553..17116622	CG5172-RC,	FBgn0030830,	CG5172,	1	.
CG5048-RA	TGGGTACATGTTTGTACCGCTTACGCTTACCGCTTCCCCATCCCGTCAATGTTGATCGTTGTCATGCAA	69	+	chr3L	14678602	14678671	14678602..14678671	CG5048-RA,	FBgn0036437,	CG5048,	1	.
CG18028-RC	TCGGAGATAGTCACCACGCAAAGACGAGGTCAGCAGGTTTCCTACGAACAACTATGCTCATTGTGCCAC	69	+	chr2L	22832965	22833034	22832965..22833034	CG18028-RA,CG18028-RC,CG18028-RB,	FBgn0002566,	lt,	1	.
CG30392-RA	ACTTTGTCTACGAGTTTCTCAATCGGATCCAGGCGATACCCGACGACCAAAAGACTGTGGACGTGTGCA	69	-	chr2R	17179017	17179086	17179017..17179086	CG30392-RA,	FBgn0050392,	CG30392,	1	.
CG13224-RA	CCATCTCTCTCACCCCACAAGAATAGCCAACGAAATGTTCAAGATCGCCATCTGCTTGTTGGCCC	65	+	chr2R	7142715	7142780	7142715..7142780	CG13224-RA,	FBgn0033598,	Cpr47Eb,	1	.
CG31897-RA	TTGGGAACGATATCTAGGATGAAGCCCTCGGATCAGGCAAATGCGGTTTGGAACGATTTGCAGGGGAAA	69	+	chr2L	8444526	8444595	8444526..8444595	CG31897-RA,	FBgn0051897,	CG31897,	1	.
CG5181-RA	AGGTGGCCTTAAGGGGGAACGGCGTTAAATGGTCTACAGACGCGGGATAGCACTTAGCGATCAAGAATT	69	-	chr2L	7408985	7409054	7408985..7409054	CG5181-RA,	FBgn0031909,	CG5181,	1	.
CG12795-RA	CTTAGTGTAGAGGAAAACAGTAACCGGAGAAGTACAATCATGGAATTTCCACACTTGGGACAGCA	65	+	chr2L	3452577	3452642	3452577..3452642	CG12795-RB,	FBgn0031535,	CG12795,	1	.
CG5863-RA	GCCACAGAAACGCTCGATAACCGATTGAACTTGGAGTACGCTGGACCCATTAGCATTGGATCGCCGG	67	+	chr3R	13237100	13237167	13237100..13237167	CG5863-RA,	FBgn0038507,	CG5863,	1	.
CG13828-RA	GAACGTGAAGTTGGCTTTTGTTGACGGTTACGACGTGTATCCCAAGGGCGAGCCATGTCTCTGGC	65	+	chr3R	19068047	19068112	19068047..19068112				0	no match
CG1903-RA	ACAACAAGAACCATCGGAGGGACGAACATCAAGAACAACCACCGTTAGCAGTAAGCAGGAGAATCAAAA	69	-	chrX	13105134	13105203	13105134..13105203	CG1903-RA,CG1903-RB,CG1903-RC,CG1903-RD,	FBgn0005410,	sno,	1	.
CG5580-RB	GTAGTTCGGGTCATCGGCGTGAGAAGACCAAGGACAAGAACGCACATTCCAATCGCATGTCCGTG	65	-	chr2R	14173691	14173756	14173691..14173756	CG5580-RC,CG5580-RD,CG5580-RE,CG5580-RF,CG5580-RG,CG5580-RH,	FBgn0010575,	sbb,	1	.
CG5540-RA	ACCCGCACAATTTTCGTTCAATTCCTCTTGATCGGAATTTGCCTTGGCCTTTCAATGATCAATCT	65	+	chr3R	23672517	23672582	23672517..23672582	CG5540-RA,	FBgn0039551,	Or98a,	1	.
CG9296-RA	ACTTCGCTTTTGAGTACTTCAGCATTTCAATGCAATTGTTTGCGCGTTTATGAACTAGTTGTAGTCCAA	69	-	chr2L	8685174	8685243	8685174..8685243	CG9296-RA,	FBgn0032059,	PrBP,	1	.
CG31904-RD	ACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCACCTTTGGAATACTTCATGGCGGTTGGCTT	69	.	.	.	.	.	CG13796-RB,CG13796-RA,CG13796-RC,CG13796-RD,CG31904-RD,CG31904-RB,	FBgn0031939,FBgn0260479,	CG13796,CG31904,	2	.
CR30478-RA	ACGCACAAAACTGTGTTGGTAAACAAGCGCTAGCACGGTGCGAAAAGTGTAAGGTGGTGTAAACAGCCA	69	-	chr2R	10657915	10657984	10657915..10657984	CG42254-RB,CG42254-RD,	FBgn0259112,	CG42254,	1	.
CG32939-RA	TCACCACGCCGTATACAATGCTGCATGGATCTATCGCTTTGCCATCGATCCCCATTACCCGTGTCAGAC	69	.	.	.	.	.	CG18542-RA,CG32939-RA,	FBgn0037731,FBgn0052939,	CG18542,CG32939,	2	.
CG10604-RA	CCGCCCCTGAATGGAGGTAGTGGTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATCAC	69	-	chr2L	19767821	19767890	19767821..19767890	CG10604-RA,CG10604-RB,	FBgn0000529,	bsh,	1	.
CG6605-RA	ACACAAATTGATGTTGAACAGATGGTATTGATATTGGCAACTGAAACATGCATTAATTGGCCAACCCGA	69	-	chr2L	17461180	17461249	17461180..17461249	CG6605-RA,	FBgn0000183,	BicD,	1	.
CG6576-RA	CGACGTCCACGATGTAAGGTGAATCCCTCGATAGCGCTGAGAAAGAAGAAACAGGAGACTGCACCCAGT	69	+	chr3L	8749294	8749363	8749294..8749363	CG6576-RA,	FBgn0035924,	CG6576,	1	.
CG12070-RA	CCCACCAGAGACAGCATCAAGCATATCCTGGAGGAGTCTTGCGACCGAATGAGGAAGCCAATGAACACT	69	-	chr3R	26710562	26710631	26710562..26710631	CG12070-RA,CG12070-RB,	FBgn0000416,	Sap-r,	1	.
CG13932-RA	CACCGCACAGCTGTCAGTCTCTGGATGGAGCAAGAACCCGGGTCTCCAGACTACAGACTCCAGTG	65	-	chr3L	1710075	1710140	1710075..1710140				0	no match
CG8120-RA	TGGGCCAATTACAATACTTGGTCAAATGGCTGGATTATAGCGATGAAGATAATACCTGGGAATCGGCAG	69	+	chr3R	5147662	5147731	5147662..5147731	CG8120-RA,	FBgn0037675,	HP1e,	1	.
CG6677-RA	TACGGCAACTTGCAGGCTCCATTGGGATACGACAAGTTCGGTTACTCCTGGAGATCTCGCAAGGG	65	+	chr3R	20478117	20478182	20478117..20478182	CG6677-RB,CG6677-RC,CG6677-RE,	FBgn0000139,	ash2,	1	.
CG30150-RA	GCCGAATCAATTCTAGGTGACTGGCCTGCAAATGTGGATTTGACTAGCGTGAAAAGGTCCCACAAGTGT	69	-	chr2R	16436339	16436408	16436339..16436408	CG18066-RB,CG30150-RB,	FBgn0034517,FBgn0043536,	Cpr57A,Obp57d,	2	.
CG12756-RA	CGCATCTGATAAAGCACTATTTACCTTCAAAGTTTTTAAATTAAAATTTGTACATGAAATAAAGCGAAT	69	-	chr3L	5600292	5600361	5600292..5600361	CG12756-RA,	FBgn0035624,	Eaf6,	1	.
CG12470-RA	ATGTCCTTCGGGCTCAACCGAATCATTACCCGGCTCTTCTTCGTATTCCGGAAACAATGGCGGTG	65	+	chrX	202385	202450	202385..202450	CG12470-RA,	FBgn0040371,	CG12470,	1	.
CG30436-RA	CGGCAAAGTGGATTTTTCCGTGAAACATAAAAGCAAAGTTCGCTCTGTCAATTAATGCAAGCCCGACGT	69	-	chr2R	1755023	1755092	1755023..1755092				0	no match
CG13144-RA	ACCGCCCTCGATCTTCACAAAGTCGTTGTCGCCACCAAAGATGACCAAGCTTCAGGAGTTGCAGC	65	-	chr2L	10491153	10491218	10491153..10491218	CG13144-RA,	FBgn0032260,	CG13144,	1	.
CG11253-RA	AAATGGTAAACTTTGTGCACCCCGAGGAAATGTATCTCTTTGTGGAGAGCATTCGTCCATTTGAGGTGC	69	-	chr3L	13019392	13019461	13019392..13019461	CG11253-RA,	FBgn0036338,	CG11253,	1	.
CG6695-RA	CGCCCATGATCAGCTATCCAATACCTGCGCGAATGCTCAATGTAAACCAAGCACTCACAGCTACCGCAC	69	+	chr3R	20482864	20482933	20482864..20482933	CG6695-RB,CG6695-RA,	FBgn0039215,	CG6695,	1	.
CG12358-RA	CCCGCCACAGAATCACAAACTACCCCGAACCCGTACCACGTGGACCTCATACGCGAAAAACCTTAGATA	69	+	chr3R	8809981	8810050	8809981..8810050	CG12358-RA,	FBgn0038100,	Paip2,	1	.
CG12874-RA	AGCCCGCTTCCAGCCAGGTCGTGCTCCATGTCCTGTGTAAGTATGCCACCCACAACCATATTTAA	65	-	chr3R	23613933	23613998	23613933..23613998				0	no match
CG3274-RA	GGAACTGTCCCCGCAAGAAATTCAAGTCTCTTAACGAGCTGCAGTACCACGTGTGCAGTGTCCACTGTC	69	+	chr2R	2529174	2529243	2529174..2529243	CG3274-RA,	FBgn0042085,	Bap170,	1	.
CG8566-RD	GCCATCGGTTGATGCACGAGCTTAGGTCAGGTTAATGGATCAATTGGAGCTTCACTTGTGCCCGGATCA	69	-	chr2R	12639633	12639702	12639633..12639702	CG8566-RD,CG8566-RB,CG8566-RC,CG8566-RE,CG8566-RF,CG8566-RG,	FBgn0034155,	unc-104,	1	.
CG9507-RA	CGATCCGGAATCCGAATCCTACGTAAGCTCACTGTTCCAGCGTTTGAAGGTGCGATTTGGCCAAATCTT	69	+	chr2L	6382397	6382466	6382397..6382466	CG9507-RA,	FBgn0031808,	CG9507,	1	.
CG31239-RA	CGAATACCTGCAGATATATATCTTGTATCTACGATATTTTCCAATACTTTGCATACCACATACCAC	66	-	chr3R	18529571	18529637	18529571..18529637				0	no match
CG17975-RA	GGCAGCCTTTTCTCGTGGATCGGAAACTTCCTAGTGGGCATGTGCTTTCCATTGCTGCAGAGTGTC	66	+	chr2R	3976501	3976567	3976501..3976567	CG17975-RA,	FBgn0028562,	sut2,	1	.
CG13519-RA	GGACGTTCCTAATTCTGGTGGCCGTTTCAAAGGCTCAGGATAATGAGGAAACTACTGCAGTTGCCATAT	69	+	chr2R	18594474	18594543	18594474..18594543	CG13519-RA,	FBgn0034770,	Obp58d,	1	.
CG5266-RA	ACGACGCTGTTCACACCGCCATCCTTACGCTGAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACA	69	+	chr3R	8258031	8258100	8258031..8258100	CG5266-RA,	FBgn0086134,	Pros25,	1	.
CG4265-RA	CGCGGCACAACAATAGGGTGGAACTAATCCCATAACTGAGAACCACCAAGATCCCGGATCTGCCAGACT	69	-	chr2L	2212916	2212985	2212916..2212985	CG4265-RA,CG4265-RB,	FBgn0010288,	Uch,	1	.
CG30426-RA	GCAGCCCGAACTGCCTCTTTAAGATCGTTCACCGTCTGGACAGCTACAGTCCGTTAGCGAAGCCTC	66	-	chr2R	20664552	20664618	20664552..20664618	CG12196-RA,	FBgn0086908,	egg,	1	.
CG32227-RA	AGCCAGGATGATGCTCGATCCAAAATCTTGCGAAGAAAGGAGCCGAAGTCAAAGGAAGTGGCCGTGTAA	69	-	chr3L	20262544	20262613	20262544..20262613	CG32227-RA,	FBgn0052227,	gogo,	1	.
CG18585-RA	AGTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGATCTCCCACAAGGCTGGCA	69	-	chr2L	7690356	7690425	7690356..7690425	CG18585-RA,	FBgn0031929,	CG18585,	1	.
CG13472-RA	GCGATGATTTCAACGCCCGTTTGAGTAAGATAACCGAGGAAACAGCTAATCTCAAGGTGAGCAGTGCGC	69	+	chr3L	14781756	14781825	14781756..14781825	CG13472-RA,	FBgn0036450,	CG13472,	1	.
CG12127-RA	GGCGTATTCCCCGCTCTATCTGACCAAAATGAGGCTCCAACGACAGTGCATTGTGGTCAACATGCG	66	-	chrX	9141056	9141122	9141056..9141122	CG12127-RA,CG12127-RB,	FBgn0000077,	amx,	1	.
CG5418-RA	GCCGTGAATGCCATGTATCGGCTAGTGTGTCAATATCCAAAACAAGTTGACTTTCTACTTTGCGGGCCA	69	-	chr2L	12452690	12452759	12452690..12452759	CG5418-RA,	FBgn0032436,	CG5418,	1	.
CG14772-RA	TCTGCTCAAGGGTTTGTTGATCCTCGATATTCAAGCAGAAAATTCGTGCCGCTTGTTTGCCAGTGAAAT	69	+	chrX	1308707	1308921	1308707..1308718,1308863..1308921				0	no match
CG30007-RA	TGGGGTACCTGCATCGAAGCCAATGTGGGTGATAAGTCATTGGACCAACGAGACACTACCTTCAACGCA	69	+	chr2R	5785639	5785708	5785639..5785708	CG30007-RC,CG30007-RE,	FBgn0050007,	CG30007,	1	.
CG10706-RA	TGCCCCCTTCATTATTAGACTCATCATTGTGCCCATCAATAAACGTAGAAAAGCTTTGGGAAAGC	65	+	chrX	5291031	5291096	5291031..5291096	CG10706-RJ,	FBgn0029761,	SK,	1	.
CG32778-RA	GCAGCAATATGAGCAAATGCGTTATGCCCAAAGTCATGTTAGCGTTGGTCCAAGCGGAGAACTAA	65	+	chrX	3977436	3977501	3977436..3977501	CG43284-RB,CG43284-RC,CG43284-RD,	FBgn0262973,	CG43284,	1	.
CG4210-RB	AAGCTCTTTTGACCATAATCAGAAAAACACAGGTTATAAAGATTTCCCACTATGTCGAAATCCGGAGAG	69	+	chr3R	11039703	11039772	11039703..11039772	CG4210-RA,CG4210-RB,	FBgn0038302,	CG4210,	1	.
CG32710-RA	CAACATTCAAAACAGCAGCAACTACAGCACCACCGTGGCGTATGCAGTTTTGGCCAGCAGTCGTC	65	.	.	.	.	.				0	no match
CG4729-RD	CTTTGTAAAAGGCAGTCCTCTCACAAATCTCTCTGCTAAATGGATCAATTCGTGATTCCTATCCGGACG	69	-	chr3L	16375047	16375116	16375047..16375116	CG4729-RA,CG4729-RC,CG4729-RB,CG4729-RD,	FBgn0036623,	CG4729,	1	.
CG14401-RA	GCTGGATTATCCACACTACCCTTGGTCATTGCCCTTTCGATACTCGGACTGCTTGTCCTACTGGCGACC	69	+	chr2L	20870983	20871052	20870983..20871052	CG14401-RA,CG14401-RB,	FBgn0032900,	CG14401,	1	.
CG7852-RC	GGCCAACGTGTTTTGACGAACGCGAAGAATGCAGAGTTAGTTCCTGGATCTGATACGCGCACCCC	65	+	chr3L	1543273	1543338	1543273..1543338	CG7852-RB,CG7852-RC,CG7852-RA,	FBgn0035229,	CG7852,	1	.
CG2998-RA	CATCTTGCACGTGAATTCTCTGCGAATTTAGCATTTTTAGCGATCTAACATGGACAAACCAGTTGTGTG	69	+	chrX	9448693	9448762	9448693..9448762	CG2998-RA,	FBgn0030136,	RpS28b,	1	.
CG13585-RA	AGGACCCCTGCTTCTACGAAACCTGAGCATCCACAACACAATTTTCAGACCGCAATTCCTTGTTTTGTT	69	+	chr2R	20420643	20420712	20420643..20420712	CG13585-RA,CG13585-RB,CG13585-RC,CG13585-RD,	FBgn0035020,	CG13585,	1	.
CG30188-RA	GGTGAGCTCCTGAGAGTTAGCCAAAGAGGACATCAAGTGTCAGATCGTGTGCATTGGGGGGAGCAG	66	-	chr2R	19051996	19052062	19051996..19052062	CG34371-RA,	FBgn0085400,	CG34371,	1	.
CG7724-RA	GCCTCCTACACGTCCTCGATGCTGATGTACAATCGTCTAAGGGCCTCCATCCACATGGACTACATGCC	68	+	chr3L	17051346	17051414	17051346..17051414	CG7724-RA,	FBgn0036698,	CG7724,	1	.
CG7072-RA	TGCTCCTTCAAATATCACCTGGGATCCAAAGAGCCATCTCAACGTGACCGTCTCTCATGTGGCGGATCA	69	+	chr3L	8322720	8322789	8322720..8322789	CG34462-RA,	FBgn0085491,	CG34462,	1	.
CG14017-RA	TGCATTCCAACGACTCGGATAACTACAAGGTTATTCCGGATGCCGTCAAGGGTTTGTGCTTCGCGCAC	68	+	chr2L	5554559	5554627	5554559..5554627	CG14017-RA,	FBgn0031721,	CG14017,	1	.
CG14438-RA	GCTTCCGGCAGCTAGTGTCGCCAGTGATATACCATTGTTCCTTCTGCATGTTCAACTCGACCGATGAGC	69	+	chrX	6663656	6663725	6663656..6663725	CG14438-RA,CG14438-RB,	FBgn0029899,	CG14438,	1	.
CG11153-RA	CACCGAACAGCTCTTCCCAAAGGGATCACTGCGAAAACCTTACTCCTGTTGTGTCCAGTCCTCCC	65	-	chr4	823086	823151	823086..823151	CG11153-RA,CG11153-RB,	FBgn0039938,	Sox102F,	1	.
CG18340-RA	GCAACTGCCAGCGTACTAACGAATCCCACCGAGCTGATTAAGATCCAAATGCAAATGGAGGGACAGCG	68	+	chr2L	5970357	5970425	5970357..5970425	CG18340-RA,CG18340-RB,	FBgn0031758,	Ucp4B,	1	.
CR32998-RA	CAAGCAATGAAGTTCCAACTGAGCTGCGATTATTGCTAGTTGAAAACTAAAACCAATATCTCGCC	65	+	chr2L	5565641	5565706	5565641..5565706	CR32998-RA,	FBgn0041719,	snRNA:U4:25F,	1	.
CG12992-RA	TCCTATTACAACGCTCAATCGACATCCGCTTACGGCTATCCTCCGACTGGTTTTCCGATGTCCCAGCA	68	+	chrX	17485296	17485364	17485296..17485364	CG12992-RB,	FBgn0030846,	CG12992,	1	.
CG31824-RA	CTATTCCCCGACCTGAGCAGCCCATGTATACCAAAGGTGCTCCTCTAGTTTGTCCCACCGAGAGC	65	+	chr2L	15888395	15888460	15888395..15888460	CR31824-RB,	FBgn0051824,	CR31824,	1	.
CG4257-RC	ACAACATCAACATCAATAAGATCTAGCCGATCAATGCATGCAAATTGAGCACCTCAACACAAACACCTT	69	-	chr3R	16362171	16362240	16362171..16362240	CG4257-RE,CG4257-RF,CG4257-RC,CG4257-RB,CG4257-RG,	FBgn0016917,	Stat92E,	1	.
CG11345-RA	CCAAGAACGTTCCAACAGAAAAATGAAAGTCCTTATGCTGGCTGTTTGCAGCTTGGCTCTGGTAGC	66	-	chr3L	4458004	4458134	4458004..4458045,4458109..4458134	CG11345-RA,	FBgn0035546,	CG11345,	1	.
CG5630-RA	TTAAAATAGTGAACGGTGTCATGCAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTCAGCG	69	+	chr3R	16751896	16751965	16751896..16751965	CG5630-RA,CG5630-RB,	FBgn0038842,	CG5630,	1	.
CG14880-RB	CGCCGTCCAAGATCTATGAGCCACCCTTTGTGTACCCCATCTACAATCTAGAAGAGTCCCAGACCCAGA	69	-	chr3R	12187119	12187188	12187119..12187188	CG14880-RB,CG14880-RA,	FBgn0038422,	CG14880,	1	.
CG18600-RA	GCGGATCCCAATGTGGCAAAGAAGGGAACTCGCACCAATTTCAGCAGTGAAAAGGCACTGACACACTTT	69	-	chr3R	14126301	14126370	14126301..14126370	CG18600-RA,	FBgn0038601,	CG18600,	1	.
CG15563-RA	CCGTCGATCCGTCTCCGTTTCCAAGCAACTGGACAGGGATCTGTGCAACCAACATTTCGACACATTCG	68	-	chr3R	27057763	27057831	27057763..27057831	CG15563-RA,	FBgn0039832,	CG15563,	1	.
CG31415-RA	AAAATGTAACAGATCAGATATAAAGTTGTTTCGAGACTAACTTTCAGTACTCCCAATACTCCAAC	65	+	chr3R	5569240	5569305	5569240..5569305	CG31415-RA,	FBgn0051415,	CG31415,	1	.
CG10447-RA	TCGGATCGTAATCTCTTTCTGGACGCCAGTTATCCGCACAACGAAGATGGGTCCTCCGCAAACGATG	67	+	chr2L	19736642	19736709	19736642..19736709	CG10447-RA,	FBgn0032816,	Nf-YB,	1	.
CG11598-RA	AGATCTAACGTTAAACCGATAAATATTATTCATATATCAGCGTTTTTTTCACTTATTCCTCCTCG	65	+	chr3R	8460571	8460636	8460571..8460636				0	no match
CG30044-RA	GGAGTCCAGTGGTTATGTGTGAGCCTAACAAGCAGTTCACATTAGTTGTATGGCTGCAAACCGAAACCT	69	+	chr2R	8388535	8388604	8388535..8388604	CG30044-RA,CG30044-RB,	FBgn0050044,	s-cup,	1	.
CG14502-RA	AAAATGACTACAAGATTATGCCGTTTAGCATCCCGAAACAGCCATATGTTGAGTTCATGAACAGCCACT	69	+	chr2R	14181800	14181869	14181800..14181869	CG14502-RA,CG14502-RB,CG14502-RC,	FBgn0034321,	CG14502,	1	.
CG30020-RA	GCCGGAAGACTTTTGCCTTCAAACACCATTTGATACGCCATCAGAAGGCCTCTCATCTGAGCACGCG	67	+	chr2R	6779626	6779693	6779626..6779693	CG30020-RA,	FBgn0050020,	CG30020,	1	.
CG14666-RA	AAAGCTTTTAAGGTTTTAAGTCAACCTCCCATGCTTCTTCCAAATTAAGTGTTAATTCGATATTCAGCG	69	-	chr3R	1084119	1084188	1084119..1084188	CG14666-RA,	FBgn0037307,	Tim17a2,	1	.
CG14657-RB	CGTCAGCAGATCTCCGCAAGCACCTAAGGTCTAAAAAACTTCAATACTCGCTCATTGGAACGTAAGCCC	69	-	chr3R	644786	644855	644786..644855	CG14657-RB,	FBgn0037282,	CG14657,	1	.
CG5250-RA	CAGGCGCATCATCAGTGTTCGGTTGAGCAACATTCCGATCAACGAGGACATCCAAATCCACTGCAAGGC	69	-	chr3R	15054122	15054191	15054122..15054191	CG5250-RA,	FBgn0038691,	CG5250,	1	.
CG40235-RA	CGGGGATTTGCATGCCACAGCGTCAACCCAATACATGGCCATTATACTGGCTAACAAGGTTGGCGAG	67	+	chrU	1628921	1628988	1628921..1628988				0	no match
CG3621-RA	TCGCCTTTTTTTGAGTTGTAGTACGAGCCGGTTAAAGCTAATATAGAATCAAATTGAAGCAGAAA	65	+	chrX	2067108	2067173	2067108..2067173	CG3621-RA,	FBgn0025839,	CG3621,	1	.
CG6554-RA	GCGTCTTGGGTTCAGTACGTCACCAGACTCCACATACACGCATTGGAAGCAAACCGTGTTCTACCTCGA	69	-	chr3R	6612644	6612713	6612644..6612713	CG6554-RA,	FBgn0037834,	Art1,	1	.
CG14606-RA	CGGGGAGCGTTATCGTCCATGGCCATGATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCC	69	-	chr3R	3041506	3041575	3041506..3041575	CG14606-RA,	FBgn0037485,	CG14606,	1	.
CG10764-RA	CGTAGTGCTCGAAGGAATAAGCGCAATCAACCAAATTGAATCGGTTTCAAAGCACCCAAATTTTACTAC	69	+	chr2R	13342566	13342635	13342566..13342635	CG10764-RA,	FBgn0034221,	CG10764,	1	.
CG3771-RA	TACGAACTCTCGCTGAGCAAACTACGCGAAGGCCTGGCTTTTAGTGGAGTGCCGGAATACACGAA	65	-	chrX	1588690	1588755	1588690..1588755	CG3771-RA,	FBgn0023130,	a6,	1	.
CG13623-RA	AGTTGGGATGTATCGAACTATCGACACCTATCGTTATCGTGCGAAATCAGCTGAAATTGTTTGGATTAC	69	-	chr3R	20356079	20356148	20356079..20356148	CG13623-RA,	FBgn0039205,	CG13623,	1	.
CG7506-RA	TGTGGATCCAGCGCTTTTCGATGATCCCGAGCACTATGTTAAGATAATGGGTTACGACAAACCGATCGA	69	-	chr3L	7633975	7634044	7633975..7634044	CG7506-RA,	FBgn0035805,	CG7506,	1	.
CG32310-RA	CCCGGTATTCGCAAGCAGCCACAACTGACCACCATGGAGACTTCCTTTAAGTCCAGTGGCTATACAGCT	69	-	chr3L	2127293	2127362	2127293..2127362	CG33484-RD,	FBgn0052311,	zormin,	1	.
CG1433-RA	GGTCACGCATCCGTTTGATCCGGAAACCTACGAAGACGAGATCGACGAAGAGGAGACAATGGACGAGGA	69	+	chr3R	1440631	1440700	1440631..1440700	CG1433-RA,	FBgn0019637,	Atu,	1	.
CG31796-RA	GCACATCAAAGGCAATTCCCAAGGCGGTAAAGAGTTTTCGGCTGACTCTCGCTCATTTGCGTGCGAT	67	-	chr2L	19273217	19273284	19273217..19273284				0	no match
CG14615-RA	GGCTCAAATACCGCGCAATGATCTGAACCACATTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGG	69	-	chrX	21850850	21850919	21850850..21850919	CG14615-RA,	FBgn0031184,	CG14615,	1	.
CG5709-RA	ACCGCCTAAGCAGATCGGCTCATCGGTTAGACCCTAAGTTTTAAACCTTGTATTAGCCCCGCGTGAACA	69	+	chr2R	18104465	18104534	18104465..18104534	CG5709-RA,	FBgn0025186,	ari-2,	1	.
CG14952-RA	AGCAGCAACATGAAACACCAAGGGGACTCCTACGTGCGATGGCGATACAAGAGCTTACAAACAGCTCGT	69	-	chr3L	2847718	2847787	2847718..2847787				0	no match
CG3502-RA	GGCCTGTCGTTACCATGTGGCTGATTGCACGGATCAGGCCAAGATTCTCGCTATAACCCATAGAACTGA	69	-	chr2R	19231599	19231668	19231599..19231668	CG3502-RB,	FBgn0046253,	CG3502,	1	.
CG31038-RA	GCAGCAGTTCTCGAAGTGCCCCCACAAAGAATCCCGTTGCGAAGCCTAGATTATCTGCTGCTTACCTC	68	+	chr3R	25728558	25728626	25728558..25728626	CG31038-RF,CG31038-RA,CG31038-RC,CG31038-RE,	FBgn0051038,	CG31038,	1	.
CG18420-RA	CCTTTCAACATCGCTTTTACGATCCAAACACGCATGCCAATGATATAGCCCTACTGCGACTGGTGTCCA	69	-	chr2L	14795947	14796016	14795947..14796016	CG18420-RA,	FBgn0028866,	CG18420,	1	.
CG7583-RB	GGGAGCTCTGATGTGGCACACCATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCAT	69	+	chr3R	8845634	8845703	8845634..8845703	CG7583-RC,CG7583-RD,CG7583-RE,CG7583-RB,CG7583-RA,	FBgn0020496,	CtBP,	1	.
CG32130-RA	GAGCCAGTGACTCCACAGCCACAGGATGCTACAAAGATGCAGGAACCCATCCCTCTACCAGCACC	65	+	chr3L	13475682	13475747	13475682..13475747	CG32130-RA,CG32130-RB,CG32130-RC,CG32130-RD,CG32130-RE,	FBgn0086708,	stv,	1	.
CG14512-RA	GTGGATGCCCAGCTAGCTACTCTGGACTTTGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTT	69	-	chr3R	24963774	24963843	24963774..24963843	CG14512-RA,	FBgn0039639,	CG14512,	1	.
CG10846-RA	CCGCCATGCAGGACGAGATGATCAACTACACTAAGTCATTCTACGAGCATTTCGTGAGGGCTCCAGCGC	69	+	chr2L	15006459	15006528	15006459..15006528	CG10846-RA,	FBgn0040228,	dyn-p25,	1	.
CG14820-RA	ACACGGGCATTCCCATAGAGCGGTATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCTTTGGGCTGGCT	69	+	chr3L	6926035	6926104	6926035..6926104	CG14820-RA,	FBgn0035718,	CG14820,	1	.
CG14550-RA	GGCGGTCTATGGTTTCGCCTTCTATATGCTGTTCACGGTCCTCTTCCTCGTATACGTGACTTGGGCGC	68	-	chr3R	21883442	21883510	21883442..21883510	CG42498-RA,CG14550-RA,	FBgn0260224,FBgn0039405,	CG42498,CG14550,	2	.
CG14938-RA	TTAGTTGAACTACTAAAAGTAATGATTGAAAGCACGGATCGAAGGAATGGAGATAGGAGTTCCCGCGTG	69	-	chr2L	11795748	11795817	11795748..11795817	CG14938-RB,CG14938-RC,CG14938-RD,CG14938-RA,CG14938-RE,	FBgn0020309,	crol,	1	.
CG32275-RA	GGCCACAGAATTTAGAATCAGCAGGTGAAACTTCTTTCGGAATTCCAGCGATTATTGACCGCATTCTGA	69	-	chr3L	3291016	3291085	3291016..3291085				0	no match
CG3246-RA	CACGGACCGCATCAAGATCGACATCACATTCTCGGACATGACAATGGACTTCCAGAACCTCGGCCT	66	-	chr2L	3461156	3461222	3461156..3461222	CG3246-RA,	FBgn0031538,	CG3246,	1	.
CG17894-RC	ATGCTATCAAAAGCTTCCAAGGATCTCTGACCACCTTTGACCAATCCCTGTACTTGTATGTCGCTATAT	69	-	chr3R	19011550	19011619	19011550..19011619	CG43286-RF,CG43286-RE,CG43286-RD,CG43286-RA,CG43286-RC,CG43286-RB,CG43286-RG,CG43286-RH,CG43286-RJ,CG43286-RK,CG43286-RL,	FBgn0262975,	cnc,	1	.
CG15082-RA	CCAGTGAAACGGAAATGGATAACCAATTCGGAGATAGCTATCTCGACCCGTATCCTACGCTGTTCGGT	68	+	chr2R	14719898	14719966	14719898..14719966	CG15082-RA,	FBgn0034397,	CG15082,	1	.
CG3508-RB	GGAGCTGCACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAGGTGCTCTTC	67	+	chr3R	10485769	10485836	10485769..10485836	CG3508-RB,CG3508-RA,	FBgn0038251,	CG3508,	1	.
CG18304-RA	GCCCTTTTGCAGACCGTTGATGAGCTTGTGAAGATAGCTCCTGACCTGAAAATAGTTGGCAGCGGC	66	-	chr2L	6933798	6933864	6933798..6933864	CG18304-RA,CG18304-RB,	FBgn0031869,	CG18304,	1	.
CG3666-RA	AGATGTGGTGTTGGTGGATCAGGAAATGCGCGTGAAAGCTCAGCGGGATTACAATCTAGTGCCATTGCT	69	+	chr2R	12116395	12116464	12116395..12116464	CG3666-RA,	FBgn0034094,	Tsf3,	1	.
CG3153-RA	CACCTACAAGAACAGCTTCAAGATCCTGCCCGTCTACCCGACCGTCAGTTTGGAGATCCACTGGG	65	+	chr3R	9917798	9917863	9917798..9917863	CG3153-RB,CG3153-RA,	FBgn0038198,	Npc2b,	1	.
CG30075-RA	CGCTCTGTCAGCACGGTCGTGCCCTAAGCGACTTGGGTAAATACCATCCATCCCGTTTGTGCTACATAA	69	+	chr2R	10263926	10263995	10263926..10263995	CG30075-RA,	FBgn0050075,	CG30075,	1	.
CG14991-RA	CCGTCTGGAAGTTCCGTCAGAGATCAGAAATGGTCCGAACAGTGAGGTCTGGGTGAGATGCGACAACGA	69	+	chr3L	4105668	4105737	4105668..4105737	CG14991-RA,CG14991-RB,	FBgn0035498,	Fit1,	1	.
CG6983-RA	TGGACCTTTTGCAAATGTGTATAGAAATGTAACGCAATCCAGGCAATTAAATAACCCTAAAATATGCAA	69	-	chr3L	8436501	8436570	8436501..8436570				0	no match
CG10838-RA	TTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGCACTGATGCAAACGGTG	65	-	chr2L	2290472	2290537	2290472..2290537	CG10838-RA,	FBgn0028570,	robl22E,	1	.
CG4741-RA	AGAACTGCTGTCTTCGAGACATTTTTCAGTTCCAATCAGGAATTAACACCCGAGTTCAACATGGCCCCT	69	-	chr2R	20501789	20501858	20501789..20501858	CG4741-RA,	FBgn0035040,	CG4741,	1	.
CG1091-RB	GGCGACCGTCCCCGTCATCAAGGGCTTCCTTCGAAACTTCTTTGCGTATTTCGCCAAATTTGACTACGA	69	-	chr3R	2909486	2909555	2909486..2909555	CG1091-RB,CG1091-RA,	FBgn0037470,	CG1091,	1	.
CG10816-RA	AACCACAAAAGTCACGTTTGAGAGAAAAAAAGCCTAAACGAATTTAATTCGCGACTCATATGAATCACA	69	+	chr2R	10633923	10633992	10633923..10633992				0	no match
CG7488-RA	TGGTGCACGATGCCTCAAATGCCTGGACTAGGAAGGAACTGCATCCCACTGTCTTGGATACGCTGAAG	68	+	chr3R	8821854	8821922	8821854..8821922	CG7488-RA,	FBgn0038106,	CG7488,	1	.
CG14712-RA	ACCGGAGAGTCGTCCGATACGAAAGGCCACTAGGCGTCTGCAGAAATAAGTCCGCTTCAGAAGTAGCTT	69	+	chr3R	7458612	7458681	7458612..7458681	CG14712-RA,	FBgn0037924,	CG14712,	1	.
CG14980-RB	ACGGATGTTTCTCCTCCTGCGGAAGTGAAGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGA	69	-	chr3L	3898504	3898573	3898504..3898573	CG14980-RB,	FBgn0035470,	CG14980,	1	.
CG11695-RA	CAACTGGTCAGCCGGATTAGCTACGATGTACACATGCTACGCTTCCATCCCAACAAGGACGACCT	65	+	chrX	11471928	11471993	11471928..11471993	CG11695-RA,CG11695-RB,	FBgn0030316,	CG11695,	1	.
CG13540-RA	GCACTGCTCGGAAAAGAGTTTTGCGCCCTCTGGTGACGAAATACCCACACCACGTGATTTGAAGGACAA	69	+	chr2R	19158405	19158474	19158405..19158474	CG13540-RA,	FBgn0034839,	CG13540,	1	.
CG30427-RB	GCACCGTTGTGGAGATGAGCAAACGCATCAACAAGCAGTTCCCATTTAACGCGGGTCTATGGTACCC	67	-	chr2R	20818359	20818426	20818359..20818426	CG30427-RB,CG30427-RE,CG30427-RF,	FBgn0043792,	CG30427,	1	.
CG4183-RA	CGCTTGACGAACAGAGCACAGATCGAATTCAAAAATCGAGCAGTGAACAACTCAAAGCAACTTTGCGCA	69	-	chr3L	9370420	9370489	9370420..9370489	CG4183-RA,	FBgn0001225,	Hsp26,	1	.
CG31793-RA	GGACGTCCACCTCAAGGAGGAAATTTCGGAGTTGCCTTCGGGTCTGCAGAGCATCATATCTGAGGG	66	+	chr2L	19007556	19007622	19007556..19007622	CG31793-RA,	FBgn0051793,	CG31793,	1	.
CG7552-RA	CGCCGGAGCAAAAGAAACGGAATTGAAATGTCTTTGCTAATGTAAACAGCGCAAAGAGAAACCCCCCGA	69	-	chr3R	10549418	10549487	10549418..10549487	CG33967-RA,	FBgn0262127,	kibra,	1	.
CG17599-RA	GGCAGAGCTACAGAAGGTTACCCGACTCTTGACATCCCCAGGACAAAACGAAGCGGACAACGACG	65	-	chrX	21945632	21945697	21945632..21945697	CG17599-RA,	FBgn0031196,	CG17599,	1	.
CG31627-RA	TTCCAGCACGGATTTCTTTTCACTCTCCGACAAGCCATCGTTGGGAAGAAGACGAGCCCTACTGGC	66	+	chr2L	21173322	21173388	21173322..21173388	CG31627-RB,	FBgn0051627,	CG31627,	1	.
CG17286-RA	CAACAAGGGCCCTCTCACCGCTTTCGTTGGTATATCAGTGGACTCCACCGTGCTCATGAAACTGC	65	-	chr3L	16585351	16585416	16585351..16585416	CG17286-RA,	FBgn0027500,	spd-2,	1	.
CG10989-RA	AACATGTGCGATGACAAGGACAAACACCTGGGCATGGATGTGACGGTGACTGCGCCCTTGGAAAC	65	-	chr3R	1692091	1692616	1692091..1692125,1692585..1692616	CG34113-RO,CG34113-RP,	FBgn0083949,	CG34113,	1	.
CG3169-RA	CGGACCTTCGCATCCCAACGCCGACAATGAACATTTTGGCCTATCTGGCGCATGAGACCATTGCC	65	+	chr3R	7843764	7843829	7843764..7843829	CG3169-RA,	FBgn0037981,	Spt3,	1	.
CG14560-RA	CAGCGGGTGGTTCCGGTAGAAAGAAAAATGTCAATCACAACGTCATAACCATTGGATAAAATTCTTCGA	69	+	chr3L	22076125	22076194	22076125..22076194	CG14560-RA,	FBgn0004414,	msopa,	1	.
CG6509-RB	ACCGTTGTCCGAGTGTCTGATGGTTCGCCTTACAATTGACTTCTCCAACCTCTTCAAACTGTGCGAGGT	69	-	chr2L	11509864	11509933	11509864..11509933	CG6509-RB,CG6509-RA,	FBgn0032363,	CG6509,	1	.
CG16914-RA	AGCGACTCCGAGGTTAACTTGCTGGACTTTAACTACGCTTATGAGCTATCCAACCATATTCGCGCCGT	68	-	chr2R	20667696	20667764	20667696..20667764	CG16914-RA,	FBgn0025578,	Lcp9,	1	.
CG17344-RA	CGAGCTCCTTTCGCAAAGTAGTTCGTATGCCAGCAGACAAAATCCCTACGCGTATCCGCCAGCGG	65	+	chr2L	19102626	19102691	19102626..19102691	CG17344-RA,	FBgn0032755,	CG17344,	1	.
CG4851-RA	TTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCAATGGATGGTACAGCTTGGAGAACGCCTGGC	69	+	chr2L	11280617	11280686	11280617..11280686	CG4851-RA,	FBgn0032358,	Ppt2,	1	.
CG13495-RA	CCGTTGTCTTCGCCCTAATGAGCACTACCCTAAGGATACGCTCCTGCAGGAAATGCCTACGCTTGGAA	68	-	chr2R	17867060	17867128	17867060..17867128	CG13495-RA,	FBgn0041238,	Gr58b,	1	.
CG32320-RA	CCCGAGGATCCTGAGCCAGAAGACGACCCTGAAGATCGATGCCAAAAATCACCTACAGAATGTCGATGC	69	+	chr3L	1398819	1398888	1398819..1398888	CG32320-RC,	FBgn0052320,	CG32320,	1	.
CG4920-RA	TGGAGCGTACTATACCCCATCCCGACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCT	67	+	chr3R	11155565	11155632	11155565..11155632	CG4920-RA,	FBgn0000533,	ea,	1	.
CG6494-RA	TGCGCAAATGTTGCTTTGAAGTGTTGCAAACATGCGAATCCTAAACTCGGTTCACAACTTCGTTGGCTT	69	+	chr3L	8671671	8671740	8671671..8671740	CG6494-RA,CG6494-RB,	FBgn0001168,	h,	1	.
CG5359-RA	CCAAGTCGCGATCGACGATGAAAAACAGAAACGGATGATTCACAGAGATCTGAATGGGCTTCGATTGGG	69	-	chr3R	5825911	5825980	5825911..5825980	CG5359-RA,CG5359-RC,CG12807-RA	FBgn0037773,FBgn0037772	CG5359,Spn85F	2	.
CG11421-RA	TGTGGTAGTTTAGTTTCTGCTAGTTTTCAATAGCTGTCGAGTAATAAACGTAGGCGAGTTGTGCA	65	-	chr3R	1797879	1797944	1797879..1797944	CG11421-RA,	FBgn0011281,	Pbprp3,	1	.
CG7950-RB	TAATCGCCAGAAAACTCCGTGATCCAGACTCCGTGACTCTGACGCCCGTATTCTTCTGTGGCTGC	65	+	chr3R	25882851	25882916	25882851..25882916	CG7950-RB,	FBgn0260468,	CG7950,	1	.
CG17932-RB	GGTGCCAATGAGTGCCGAAGATGAGAAAGTGCTCAACGATGGTATGGCTGGAATGGTGAAGGAGAAGCC	69	+	chr2L	16800055	16800124	16800055..16800124	CG17932-RA,CG17932-RB,	FBgn0040260,	Ugt36Bc,	1	.
CG31676-RA	TCAACAAGTTTTAGTCACTTTGCCCTCACGAATCTGCACAAATCACAGACGAACAGGATGCCCCG	65	+	chr2L	20848879	20848944	20848879..20848944	CG31676-RA,	FBgn0051676,	CG31676,	1	.
CG10909-RA	TGGGCGATCGGTATCCCACATCTCGGATATAGTGGGTGACTCCGGAATGGTTTATGCTGTGGAGCAGAT	69	-	chr3R	8736290	8736359	8736290..8736359	CG10909-RA,	FBgn0038090,	CG10909,	1	.
CG10808-RA	CCCTGGTCCCCCCGATGATCAGCTTGTTAGCAATGGCAATAGCTCGAGACAGAGGAAAACATGATGTTT	69	-	chr2R	9730179	9730248	9730179..9730248	CG10808-RA,	FBgn0033876,	synaptogyrin,	1	.
CG7050-RA	GCGACCCCCATATCACCATCCGTGGAGATGTTCAATTGGTAACTGGAGTATTAGATAGAAATGATCTG	68	+	chr3R	18305404	18305472	18305404..18305472	CG7050-RA,CG7050-RB,	FBgn0038975,	Nrx-1,	1	.
CG18349-RA	AGAAGGTCTTTGGTTAATCGAAATCGGGACTAGAATGTGCCAACATACATATGAAAAGCTTTATTACGA	69	+	chr3L	10885493	10885562	10885493..10885562	CG18349-RA,	FBgn0036109,	Cpr67Fa2,	1	.
CG6990-RA	CACTGGCACTAGTGAAAAAAACCAAGCCGATTTTAAATATTGTAAACAATCTTGTAAAAACACAATAAA	69	+	chr3R	18571367	18571436	18571367..18571436	CG6990-RA,	FBgn0039019,	HP1c,	1	.
CG11211-RA	GGTGGATCGGAGCTATTTCTGGACCTGGATGAGCACTGGCATTCCCGTTACCTACGCACAATGGAG	66	-	chr2R	2068648	2068714	2068648..2068714	CG11211-RA,	FBgn0033067,	CG11211,	1	.
CG32372-RA	GCATTCGGGACAAACGTACGAGGACAGTCTTATGATTTAAGCTTATTTGTTGGGGGCTCAATTTCGCGT	69	+	chr3L	7520444	7520513	7520444..7520513	CG32372-RA,	FBgn0052372,	ltl,	1	.
CG1791-RA	AGTCGAAGTACGGACAGGAGATTGGCTATTTCAAGGGCATCCTGTGGAAATCCTTCCTGCCAGGACC	67	-	chrX	9857610	9857677	9857610..9857677	CG1791-RA,CG1791-RB,	FBgn0030163,	CG1791,	1	.
CG33256-RA	AGGATCGGGACCCTTTTCACCTAGGAGCAGTCTTGCCTTTGTGGGAGAATCCTTGGAGGGCATAG	65	+	chr3L	16899376	16899441	16899376..16899441	CG42679-RK,	FBgn0261565,	Lmpt,	1	.
CG5755-RA	TCCCGCACAGTACAGCCCTACAATTTCGATTCCCTCTCCTGCAACAAGAGCTCTACGACAAAATCGCCA	69	+	chr2L	18097915	18097984	18097915..18097984	CG5755-RA,	FBgn0032664,	CG5755,	1	.
CG1172-RA	CAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTGCAGGTGATTGTCAACACGG	65	+	chr3R	1221790	1221855	1221790..1221855	CG1172-RA,	FBgn0037321,	CG1172,	1	.
CG4318-RA	CAGCCAGGAGATGGAGACAATTGACTTGACAATCGATTCACCGGGGGACAACGTGGAGAATATGTGCCC	69	-	chrX	13048519	13048588	13048519..13048588	CG4318-RB,	FBgn0030455,	CG4318,	1	.
CG31495-RA	TCTCCATTGGCATCAAACGGTTGCTTGACTTGATTGCGTGGGTGAATTCCCTAAATCCCGACCGTCG	67	-	chr3R	9664580	9664647	9664580..9664647	CG31495-RA,	FBgn0051495,	CG31495,	1	.
CG17327-RB	CGACGGACCAGGATCCCGTGGAACTAATGCTGAAGAAGACCGGCTGCATAGAGCTTCACTACAAGGTG	68	-	chr3R	8823166	8823234	8823166..8823234	CG17327-RB,CG17327-RA,	FBgn0038107,	CG17327,	1	.
CG4764-RA	CGGACGAAAGTGAAGTTTTAGATTTAATGCAATAATAAACGATTACAAAGTAAGGAAAAACACCCCCAG	69	+	chr2L	1151584	1151653	1151584..1151653	CG4764-RA,	FBgn0031310,	CG4764,	1	.
CG30091-RA	GTTGAACAGCTGGGATAGAAGTGGTCCCGATGCGATCAGGTCCTTCGAGTGGTTGGCTGAGGTCTAC	67	+	chr2R	11569037	11569104	11569037..11569104	CG30091-RA,	FBgn0050091,	CG30091,	1	.
CG7059-RC	CGGTTGTACGGCGCTCGGCAGTTCTAGTGGAAACATCGGTACCCTTATCATCCGCTGTCTGACATTAGC	69	+	chr3R	18216476	18216545	18216476..18216545	CG7059-RC,	FBgn0038957,	CG7059,	1	.
CG31278-RA	CTTGCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAACAAGCGGCTTTGG	65	-	chr3R	6533788	6533853	6533788..6533853	CG31278-RA,	FBgn0051278,	CG31278,	1	.
CG33129-RC	GAAACTCATTGAAATTAAGTTAGAAAATGGCTCAGGTTAAACCGAAAAGTAACAAACAGAGCGGC	65	-	chr2L	10966525	10966590	10966525..10966590	CG33129-RA,CG33129-RB,CG33129-RC,	FBgn0053129,	CG33129,	1	.
CG12899-RA	GCCAAAACCTCCAAGTGAGCTACACCGCTTTGGCCATGTCGGACGATAATCAAACCTGCAGCTACTCG	68	-	chr2R	6275847	6275915	6275847..6275915	CG42732-RE,CG42732-RD,	FBgn0261698,	CG42732,	1	.
CG33157-RD	GCCCGGATTTTTGGCGTACTACCCCTGGCCGGAATAAATCCTAATGGCAAGCCGGAAAATGTTCG	65	+	chr3L	4032204	4032269	4032204..4032269	CG32258-RA,CG14987-RA,CG14987-RB,	FBgn0045476,FBgn0035486,	Gr64e,Gr64d,	2	.
CG32156-RC	AATATCATCGAGGATCCAGACCGCCAGTTCATGAGACTCCGGAGATGTGTCGAAACCAGCCCACG	65	+	chr3L	16074547	16074612	16074547..16074612	CG32156-RF,CG32156-RG,CG32156-RH,CG32156-RI,CG32156-RJ,CG32156-RK,CG32156-RM,CG32156-RN,CG32156-RO,CG32156-RP,	FBgn0005536,	Mbs,	1	.
CG6955-RA	AGGCCCGTTCAGTGAATCCCAGGGAATCCGATTGAAAGTCATTCGCCAATCAAGTTCCAATTCAGCGCA	69	+	chr3L	6136971	6137040	6136971..6137040	CG6955-RA,	FBgn0020641,	Lcp65Ad,	1	.
CG3564-RA	AATGGAAACAGAACAGCAAATATTTTCAGACACACATTCAAGGGGGGAAGAGACACTTGTGAACTTTCG	69	+	chrX	4436350	4436419	4436350..4436419	CG3564-RA,	FBgn0029709,	CHOp24,	1	.
CG18505-RA	CCCAACGCTAAGGTCTCAAAGGCTGAATTTTCGCAAATCCAGGAAATCGAGGACTATACGTTCACTTCC	69	+	chr3R	11618959	11619028	11618959..11619028	CG18505-RA,	FBgn0038363,	Acyp2,	1	.
CG10932-RA	GGAATTGCGAAGACCGATGTCCAGGAGGTGATTATGGGCAATGTGGTATCTGCTGGTCTGGGACAGG	67	-	chrX	7782450	7782517	7782450..7782517	CG10932-RA,	FBgn0029969,	CG10932,	1	.
CG1150-RA	CTGCTGGCGGTGATCATCTCACTGAAGAAGCTGCTCTCTAGCAAGAAAACCATCGTGGAGGTGCCAT	67	+	chr3R	2043405	2043472	2043405..2043472	CG1150-RA,	FBgn0037411,	Osi3,	1	.
CG7637-RA	TCAAGAAGCGCTTTGGACTGCTGCTCACCCAGAAGCCGGAGCCCATTTACTAAGCCGCATTTTAGTTTT	69	-	chr2R	6698105	6698174	6698105..6698174	CG7637-RA,	FBgn0033548,	CG7637,	1	.
CG14947-RA	TCGAATCGTCTTGGAGAGGATTACCGCATCTACCAGCAGAACGTCGACCTAGATGCCTTCTTCGGCGA	68	+	chr2L	12076972	12077040	12076972..12077040	CG14947-RA,	FBgn0032406,	CG14947,	1	.
CG5618-RA	CCGTGTTTAGCTTGATCGAAACTGAGGTGATCGCGACCATCTGCAAGTTAGCGGGATACAAGGAAGGCG	69	+	chr3L	20348424	20348493	20348424..20348493	CG5618-RA,CG5618-RC,	FBgn0036975,	CG5618,	1	.
CG15080-RA	TCGGAAAATTTCGAGACGGCTGAGTCCCAGAATCTAGGACCTCAGCTCTACAATGCTCTTCAAGCAGCC	69	+	chr2R	14680959	14681028	14680959..14681028	CG15080-RA,	FBgn0034391,	CG15080,	1	.
CG30034-RA	GGAGTGAAAAGTAGTGCCCCTTTTGATTTGGAGACTACGGACACGTGTCTGCACCCCCATAGCTCCACA	69	-	chr2R	7408977	7409046	7408977..7409046				0	no match
CG7627-RA	GGCAGAATCACAGTCTTTCCTCGTGAGAATCAGCTATTATGTGTTTGTCACCGAATCTTTAGCTGGCTA	69	-	chr2L	8355892	8355961	8355892..8355961	CG7627-RA,CG7627-RB,	FBgn0032026,	CG7627,	1	.
CG5962-RA	TGGTCAGCAAGGGATTCACCTTCTCGAATGGCAAGATCAGTCTGGAGGTTACGCTGGACAGGGAGATC	68	-	chr3L	8641307	8641375	8641307..8641375	CG5962-RA,	FBgn0000121,	Arr2,	1	.
CR32777-RA	CAGGTGTAACAAAGCCTATGAAATCCGGTCCAACCCCACATCAGGCCATAGCCAAGAAGCTCCGC	65	-	chrX	3753560	3753625	3753560..3753625	CR32777-RA,CR32777-RB,	FBgn0019661,	roX1,	1	.
CR31940-RA	TGGTGTAATGGTTAGCACTCAGGACTCTGAATCCTGCGATCCGAGTTCAAATCTCGGTAGAACCT	65	-	chr2L	2010868	2010933	2010868..2010933	CR31940-RA,	FBgn0051940,	tRNA:CR31940,	1	.
CG10952-RA	CAACACAGGCTCCCCCAACATCTGCGGTAACCAGCCCAGTGGACACTGTGATAACCATTTCATCG	65	+	chrX	14898662	14898727	14898662..14898727	CG10952-RB,CG10952-RA,CG10952-RD,	FBgn0000535,	eag,	1	.
CG17560-RA	ATTTCAAGGCCGCCATGTATGGAATGCGTCTCTATATTGGCAAGGAGAAACCCACCGCGGAGTCC	65	+	chr3R	12445182	12445247	12445182..12445247	CG17560-RA,	FBgn0038450,	CG17560,	1	.
CG33187-RB	AGCTCTCATTTGGTGGATAGTAGGGCTGGCTTAGAGGGGAGGAAGAAATCAGTAGTAACGGCGGCA	66	+	chr3R	5182864	5182930	5182864..5182930	CG33936-RD,CG33936-RC,CG33937-RA,CG33937-RB,	FBgn0053936,FBgn0053937,	CG33936,CG33937,	2	.
CG4164-RA	TGCAGCTTATCAAGTGCTTGGTTATAATTCAGCTGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCC	69	+	chr2L	453262	453331	453262..453331	CG4164-RA,	FBgn0031256,	CG4164,	1	.
CG10852-RA	GTGCATGCTATGAGCAAATGCAACCAAGCAATTTATCTAAATCTTGATCCTCACTGCGGAATACTTCCC	69	-	chr3L	3816176	3816245	3816176..3816245	CG10852-RA,	FBgn0015585,	Acp63F,	1	.
CG6398-RA	GCAGATCTACCCAGGACCTTACTATCATGGCTCGCAGTACGGACCCTACAACTACTAGAGGCACACCCG	69	+	chrX	17735074	17735143	17735074..17735143	CG6398-RA,	FBgn0030870,	CG6398,	1	.
CG2962-RA	CGGCCCACCGGGATACTAGAACAATTCGCCAATCTATCGGAGGACCTTCCTGCTAACTACATCGACAGC	69	-	chrX	10108979	10109048	10108979..10109048	CG2962-RA,	FBgn0030186,	CG2962,	1	.
CG13597-RA	GGCAGGGAAGCTTCTAATGGAGGCCTTTTACATGCGAATGGAGTCCATTGATTTGAGCACGGAGGTGGA	69	-	chr3R	19718522	19718591	19718522..19718591	CG13597-RA,	FBgn0039124,	CG13597,	1	.
CG4813-RA	AGATTATCGAACAAAACAAAATCCGACTACAGAATCTTTTAACTTCGTTTACCCTTAAGAGTCCGCGGT	69	-	chr3R	18552006	18552075	18552006..18552075	CG4813-RA,	FBgn0039013,	CG4813,	1	.
CG6448-RA	AATGAAACCCGCACCTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGAAGTCACATCCGCC	69	+	chr2L	22156675	22156744	22156675..22156744	CG42748-RB,CG42748-RC,CG42748-RD,CG42748-RE,CG42748-RF,CG42748-RH,CG42748-RG,	FBgn0261802,	CG42748,	1	.
CG18011-RA	CGGCTGTGGACGGACTTTTGTAAACAGTTCCCAGTTGAATGTGCATGTCCGAAAGATTCACGATGGCAT	69	+	chr2R	6033119	6033188	6033119..6033188	CG18011-RA,	FBgn0033491,	CG18011,	1	.
CG2253-RA	TAACAGGTGCTCAGACCATCGGCCCTGGGATCAACAATATGTCACAGATCTCAAAGTCGGTCCCCA	66	-	chrX	7965748	7965814	7965748..7965814	CG2253-RA,	FBgn0029992,	Upf2,	1	.
CG32235-RA	AGCTGAAGGGGAGAATCGCATACATAATGCTACGAGGCAGCATAATCATGAGCCGATTTCACAAGGAGA	69	-	chr3L	4860376	4860445	4860376..4860445	CG32235-RA,	FBgn0047330,	CG32235,	1	.
CG32973-RA	CTGCTGCATTTTTCACTCGCATTGTCGTTTCTTCATTTTTTTTAAGCTCTGCGCAAATATATTGA	65	-	chr2L	14099904	14099969	14099904..14099969				0	no match
CG14902-RA	GCAGGGATTCGGATTCGATGTACGCACCTTCGACGATCTGACCTTCTCCGAGATCAACGACACGCTCAA	69	-	chr3R	12326399	12326468	12326399..12326468	CG14902-RA,	FBgn0028381,	decay,	1	.
CG2913-RA	AGAGCCCGATATGACCCACCTGCGAATATACAATGGCATGCCCTGTCGCTATGAGATCTCGAGTGCAG	68	-	chrX	3758177	3758245	3758177..3758245	CG2913-RA,CG2913-RB,CG2913-RC,	FBgn0015565,	yin,	1	.
CG3493-RA	TGCAGGACGTGACGAATCGAAACCTGTTCCTGGAGCAAAAATGCGAGAACTTCCTCATACTCGAACAGT	69	-	chr2R	19259824	19259893	19259824..19259893	CG3493-RA,	FBgn0034854,	CG3493,	1	.
CG3726-RA	GGCAAGCTGAAGAAGGATCTGAGCGAGCTATGGACACGTCCGCAGATTTGAGGACCAACCAATGC	65	+	chrX	5835386	5835451	5835386..5835451	CG3726-RA,	FBgn0029824,	CG3726,	1	.
CG7033-RB	ACTAATAATCCACACACAACACATTAGCAATTATATCACACGTCCCACTCTCAAAGTCGCACAATTTCT	69	+	chrX	8986521	8986590	8986521..8986590	CG7033-RC,CG7033-RA,	FBgn0030086,	CG7033,	1	.
CG2656-RA	GCTGACCATCGGGACTGGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGCGCGCTAATTG	68	+	chr3R	2971225	2971293	2971225..2971293	CG2656-RA,	FBgn0037478,	CG2656,	1	.
CG11115-RA	TCGGGGCTGTTTTGGATGATGCACATTTTCGGGATCAACTCATGTCTCAGGTAGATCCACCGCCC	65	+	chr3L	22873234	22873299	22873234..22873299	CG11115-RA,	FBgn0037202,	Ssl1,	1	.
CG31086-RA	CATTCAAGCAGCTCAATCGAAATGGACGGTCACAGCTGGCTTCACTTCAGCAACGGAGCAATCCC	65	+	chr3R	22011360	22011496	22011360..22011388,22011459..22011496	CG31086-RA,CG31086-RB,	FBgn0051086,	CG31086,	1	.
CG7156-RA	TCCGGAGCTACGTTTGGACTACGACCAATTGCAGGCTCATCCATTCTTCAAAGGCATCGATTGGCAGG	68	-	chr3R	14065645	14065713	14065645..14065713	CG7156-RA,CG7156-RB,	FBgn0038588,	CG7156,	1	.
CG13901-RA	CGTGTGCCTAGGTAATCCCATCAATCCCCAGAGATGTCCTACCAGAACTGGCTAAACTACCTGCAGGC	68	-	chr3L	837416	837484	837416..837484	CG13901-RA,	FBgn0035164,	CG13901,	1	.
CG13614-RA	GCCACCCCTCTAAAGAAACCCATGCCAATGAAACTACACCAACGCATCGATGTGAGGCCACAAAAGCC	68	+	chr3R	20195655	20195723	20195655..20195723	CG13614-RA,	FBgn0039194,	CG13614,	1	.
CG4288-RA	TCAAAGCTGGACCCGAGCTGGATCGCTTCTGTTCGAAGGAGGAATGCGACTACATCCAGAAGACCAT	67	-	chr3R	16334367	16334434	16334367..16334434	CG4288-RB,CG4288-RA,	FBgn0038799,	CG4288,	1	.
CG4326-RA	AGTGCATTAATATGACGTACATATGTTTCTCGGTTTTCTTATAAAATGGTTAGGCCGACGAAAGAAGAT	69	-	chr2R	20061240	20061309	20061240..20061309	CG4326-RA,	FBgn0034986,	mRpS17,	1	.
CG17801-RA	GCGACCAGTGCACCAAGAGATTCAATACCAAGACCTGCTTGAATAAGCACAAGTTCCTGCACTCAGGTC	69	-	chr3R	13631643	13631712	13631643..13631712	CG17801-RA,	FBgn0038550,	CG17801,	1	.
CG11284-RA	ATTCGAGGAGGAATCTGGGAAAGCGCAATGCCCGTACAATCCCCAATTGAGATCAGCAACCGTGC	65	+	chrX	8581273	8581338	8581273..8581338	CG11284-RA,	FBgn0030056,	CG11284,	1	.
CG32809-RD	CAGCGAGACAAACATCCAGCAGAAGATAGCCGCATTGAGTCTAGCCTGTGAGACTAGTGGAGCCGC	66	-	chrX	1570154	1570220	1570154..1570220	CG32809-RD,CG32809-RE,CG32809-RF,CG32809-RG,CG32809-RH,	FBgn0023531,	CG32809,	1	.
CG18012-RA	ATGCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCTGGAGACGAGGCCG	65	-	chr3R	13636614	13636679	13636614..13636679	CG18012-RA,	FBgn0038552,	CG18012,	1	.
CG17758-RA	GCACGCTGAGGATTTCGCACAGGATACCGGGACACTCTAGAGGTCATGCCATAATCCAGCACGAT	65	-	chrX	5548852	5548917	5548852..5548917	CG42265-RA,CG42265-RB,	FBgn0259150,	CG42265,	1	.
CG31240-RA	GCCCCCAGAATGCATTCCAAATGTGCCTTACCAAAACGGGTGACGAGTGACCTCCCTCCAAATTG	65	+	chr3R	14064975	14065040	14064975..14065040	CG31240-RA,	FBgn0011701,	repo,	1	.
CG14324-RA	CCCCAACCAGTAGTTATTCCCATCAAACACGGATGGAAGGGTGGTCTAGGTCTAGGTGGATTTGGCGGA	69	-	chr3R	13444166	13444235	13444166..13444235	CG14324-RA,	FBgn0038527,	CG14324,	1	.
CG17947-RA	AAGCAATGCGAAAAATGACGGAAGAAGACAAACAAAAAATTGCTCAGCAAGTGGAGTTATTCCGTAGGG	69	-	chr3L	23318853	23318922	23318853..23318922	CG17947-RA,	FBgn0010215,	alpha-Cat,	1	.
CG3649-RA	GCCCTGCTCTCAGCTCTGCCCTTTGTGGTCATGCTGATGTCATCCTACGGATTCATTTTCCTGGC	65	+	chr2R	18734725	18734790	18734725..18734790	CG3649-RB,	FBgn0034785,	CG3649,	1	.
CG5375-RA	AGTCCGAACCTAAATCAGGCTGAAATACCCAACATGAGCAGCTTGGAAATCGGTGGAAGTGGAAGCCAG	69	-	chr2L	10329598	10329667	10329598..10329667	CG5375-RA,CG5375-RB,	FBgn0032221,	CG5375,	1	.
CG17934-RA	TTTTCGTCCTAAGTTATTTCTTTGTTAGGTTCAAAAACTTTACGGAACCATCATGTGTTGCGGAC	65	-	chr3R	3191214	3191332	3191214..3191244,3191297..3191332	CG17934-RA,	FBgn0004173,	Mst84Db,	1	.
CG18368-RA	GCCCTATCAAGACCCAGGAGAAGACCACAACGAGGATTGGAAGACGACCACTGTACGCGTGACAGAAAC	69	+	chr2R	9558461	9558530	9558461..9558530	CG18368-RA,	FBgn0033864,	CG18368,	1	.
CG13459-RA	CCCGGAGTGGACACCGACATTTAGCAAGCAGATCGAACAGTTCCACACATATCTGTTGCCCACCGAACA	69	-	chr3L	15075172	15075241	15075172..15075241	CG33957-RD,CG33957-RE,CG33957-RF,	FBgn0086690,	cp309,	1	.
CG5719-RA	TGGACGAGGATCCTTGACAGCTGAGAACTTCGTATCCTATGTACGTTACGAATTCATGGCCCGTGAGAT	69	-	chr2R	14074207	14074276	14074207..14074276	CG33958-RA,CG33958-RB,	FBgn0053958,	CG33958,	1	.
CG31373-RA	ACATGGATAGGATGGATCTCTCCACCTTCAACTGCATCCTCTGGGAGCAAATCAACGCAGCTGAA	65	-	chr3R	6534338	6534403	6534338..6534403	CG31373-RA,	FBgn0051373,	CG31373,	1	.
CG9807-RA	ATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTCAATCTGCTTTGAAGAGGTTTCCGCCAAGAG	65	.	.	.	.	.	CG9807-RA,CG32678-RA,	FBgn0030221,FBgn0067052,	Rab9Db,	2	.
CG3998-RA	CGAAGATGGCAAGCTGACTTTCAAGTGCCCATGCTACTGCAACCTCTTCTTCGCCACCAAGGAACAG	67	+	chr2L	9761163	9761230	9761163..9761230	CG3998-RA,	FBgn0022720,	zf30C,	1	.
CG6948-RA	TGAATGCAATAAAGAATGTGCACACAGTTGTCATGCTTTCCTTGACTATCATATACCCCATCACACAAA	69	+	chr3L	20236701	20236770	20236701..20236770	CG6948-RA,CG6948-RB,CG6948-RC,	FBgn0024814,	Clc,	1	.
CG18528-RA	GCATCGAACGCATCACCGGACACATCAGCTGCGAAGATATACTCGACGTGGTCTTCAAGGACTTTTGCA	69	-	chr3R	20183943	20184012	20183943..20184012	CG18528-RA,	FBgn0039189,	CG18528,	1	.
CG4220-RA	GGGTTAAATCGTGCTGCAACTGTTTCTAAAACGAATTTTCCCCACAATTCCGTTGCAGGTTACGGCAGC	69	-	chr2L	14391928	14391997	14391928..14391997				0	no match
CG32388-RA	TGCCGGAGATCCCAGATGAATCGGGTCCATTTTACGGGCAGCTCATAAAACGGATCGTGCACAGACATT	69	-	chr3L	6976800	6976869	6976800..6976869	CG32388-RA,	FBgn0250849,	CG32388,	1	.
CG3335-RA	TGGCAGGATTGTGCTTCCTCCCAGTGGGGTTACGGCACTTATCGAGTACTGTGATCCTTTGGAGG	65	+	chr3L	9619221	9619286	9619221..9619286	CG3335-RA,	FBgn0036018,	CG3335,	1	.
CG5322-RA	GGCACCGGTTCCATTCCTTCCTCCGTTGAATATTACCATGCTCCTCACAATCCCTTGACGGCCAATTCA	69	-	chr2L	10452796	10452865	10452796..10452865	CG5322-RA,	FBgn0032253,	CG5322,	1	.
CG17870-RB	GTGCGGAAATCGGTTCAAATCCCATGAATCAGGAACCATATCTGTTAGAGGAATGTGGCGAGAACGGAA	69	+	chr2R	5996115	5996184	5996115..5996184	CG17870-RD,CG17870-RE,CG17870-RB,CG17870-RH,CG17870-RC,CG17870-RG,	FBgn0004907,	14-3-3zeta,	1	.
CG8093-RA	ATACTTCCGGCAATTCGACTACGGATCTACGCGCAACAAGAAGGAGTACAGCAGCAAGACCCCGC	65	-	chr2R	11102069	11102134	11102069..11102134	CG8093-RA,	FBgn0033999,	CG8093,	1	.
CG4772-RA	ACCAGTATTCATGACCTTCGTCGGAGATTCTCACTGGTCCTGATCAATCAGCATTTTACCATGGGCCGA	69	+	chr3R	7002345	7002414	7002345..7002414	CG4772-RA,	FBgn0040252,	Ugt86Dh,	1	.
CG10431-RA	CGCGCTCATGCAAGCCCATTGTGACCAATGTAAGCCAGATACCTAACCCAATGATCTGCGAGCTGC	66	+	chr2L	18975899	18975965	18975899..18975965	CG10431-RA,	FBgn0032730,	CG10431,	1	.
CG12162-RB	AGTGGGGTCCTGAATCCTCCTGAAAATTGCATAACACGTCATTTGTACAGACTGGCTGAGGTGGGTC	67	+	chr3R	1293874	1293941	1293874..1293941	CG12162-RB,	FBgn0037329,	CG12162,	1	.
CG7492-RA	GCGCATTATCTACTGCATACCATTACGACTACGACTATGTTCACGTTCGTTCCATCTGCGTTCCGTGCT	69	-	chr3L	7645220	7645289	7645220..7645289	CG7492-RA,	FBgn0035807,	CG7492,	1	.
CG5768-RA	AGCATGGGCTATAATGGACGTGACTGCATCTTGAGAACCCTCTGCGAAAGTCGTCAATACTTCCAGCGC	69	-	chr3R	20212131	20212200	20212131..20212200	CG5768-RA,	FBgn0039198,	CG5768,	1	.
CG6666-RA	ACACCGCCAATGGTATTAGGCATCTCCTCTGGGACACCGGACGGTTCCTGAAGATCAAGGAGGTTTAC	68	-	chr3R	7035011	7035079	7035011..7035079	CG6666-RA,	FBgn0037873,	SdhC,	1	.
CG17453-RA	TTGCGGGGAGAGAGCTGGAAGGAGATGCGTCAGAAATTGGATCCAAGTCTCGAAGGTGATCGCATGTC	68	+	chr2R	10787383	10787451	10787383..10787451	CG17453-RA,	FBgn0033982,	Cyp317a1,	1	.
CG14453-RA	GCTGCAGCTAGAAACCTGTCGAGTCAGACAGCTAATACAAGCCAAAGATTGATGTTTTAACTAAATTGC	69	+	chr3L	22687630	22687699	22687630..22687699	CG14453-RA,	FBgn0037179,	CG14453,	1	.
CG30467-RA	CCGCCATGTTGATACAGCTGATGCGACTCTTTCAGTACATCATGGCCCATGTGCTTAGCGGCAAGGAG	68	+	chr2R	11426365	11426433	11426365..11426433	CG30467-RA,	FBgn0050467,	CG30467,	1	.
CG11354-RA	AGGCATGTACTAGCTCCTAAGTCTACATAAACCAGATATTATATATACAAGAGCTACATACGGCAGC	67	-	chrX	8651307	8651374	8651307..8651374	CG11354-RA,	FBgn0026411,	Lim1,	1	.
CG10874-RA	TCATTCCTTTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCCTCGGACTGCTGGA	66	-	chr2L	2190738	2190804	2190738..2190804	CG10874-RA,	FBgn0031395,	CG10874,	1	.
CG15014-RA	TCGGAGACTTCAGAGGTCGCCAATGGCAACGATAAGGAGCAAGCTGAATCTTCAGAAGAGTCCAAGTCT	69	-	chr3L	4321264	4321333	4321264..4321333	CG15014-RA,	FBgn0035532,	CG15014,	1	.
CG2746-RA	ACTGTTTATCGTCTGAATAAAACACCTTTAGTTTGGCCGAAATGATTTTGTACAAACGTGAAACTC	66	-	chr2R	20855967	20856033	20855967..20856033	CG2746-RA,CG2746-RB,	FBgn0002607,	RpL19,	1	.
CG11008-RA	CCACAGCGTCAGAAGATCCTGAGGCAGTTGAAGGAGATTCTGTGGAGGTCCCCATCAAACGAAAGGC	67	+	chr3L	12814332	12814399	12814332..12814399	CG34017-RA,CG42588-RB,	FBgn0260965,	CG42588,	1	.
CG32313-RA	GTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAGGCTCACAATCGAAGGAGGGC	66	-	chr3L	1545540	1545606	1545540..1545606	CG32313-RA,	FBgn0052313,	CG32313,	1	.
CG10283-RA	ACACATGCAGCAACACGCCGATGATATTGAGCTCTATGTGGATCCGTGCGACTATGCGAGTCTGCG	66	-	chr2L	18475405	18475471	18475405..18475471	CG10283-RA,CG10283-RB,CG10283-RC,CG10283-RD,	FBgn0032681,	CG10283,	1	.
CG1994-RA	GGGCCATTCAGCTGCTCAAGGACTACTATGCAAGGAAGCACACTAATCTGGAGGACGGTCCAGTTGC	67	-	chrX	8612169	8612236	8612169..8612236	CG1994-RA,	FBgn0027330,	l(1)G0020,	1	.
CG32261-RA	GGAACACGAGGAGGTCTGTGAATCGGTGTTCATCCAAATCAGGGAGCACTACGTCAAGATGTGCGAGCT	69	+	chr3L	4027855	4027924	4027855..4027924	CG32261-RA,	FBgn0045479,	Gr64a,	1	.
CG15404-RA	TGGTCACGAACTCGAATCCCCGGTGCAAGGGAAAACTTCAGTATCAATGCGTTTGCGACTACACCTGC	68	+	chr2L	3174079	3174147	3174079..3174147	CG15404-RA,	FBgn0031512,	CG15404,	1	.
CG3603-RA	CAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAACCCGAGATGGTTATCTGCTCAAGATGCCC	69	+	chrX	2842450	2842519	2842450..2842519	CG3603-RA,	FBgn0029648,	CG3603,	1	.
CG3541-RC	ACACATCCACAGCGCTCAACGAACCTCTATCCCATCGATCCCATCGCTTCGATTTCGATTGCTATTCCG	69	+	chr2R	20468798	20468867	20468798..20468867	CG3541-RB,CG3541-RC,CG3541-RD,	FBgn0020521,	pio,	1	.
CG6409-RA	GCCGAGCTCTTCGAGAAGAACAAGCACGCGGATAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAA	69	-	chr3L	10873903	10873972	10873903..10873972	CG6409-RA,	FBgn0036106,	CG6409,	1	.
CG32013-RA	GATAGCCTCAGCCGCGCCCTCCGTATTCGCTATCGGTTGGTCGTCGGTTTTTTTCTGCCCGTACC	65	.	.	.	.	.				0	no match
CG1146-RA	GCCTGGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTCACCCTGCTGCC	65	+	chr3L	2491152	2491217	2491152..2491217	CG1146-RB,CG1146-RC,CG1146-RA,	FBgn0035346,	CG1146,	1	.
CG1771-RA	CTGTGGAACTCGACGCTGGTCAGTGAGTATCCTCGGGTGGAAAGGGTCAGGATTTTCTCGACAGC	65	-	chrX	13110009	13110074	13110009..13110074	CG1771-RA,CG1771-RB,	FBgn0004456,	mew,	1	.
CG18146-RA	CCCTTCTCTCGTTCTACTGCATACCAGTTTGCTCGAAAACCTGCATTCATGGCAGTTGTGTGGCGCC	67	+	chr2L	13981678	13981745	13981678..13981745	CG18146-RB,CG18146-RA,	FBgn0028939,	nimC2,	1	.
CG14911-RA	CCGCCAATCCCTCATATCAGAATACGGCCTACAGTCAGTGTGGCGAGAAATACAATTACCAGGGCCACG	69	+	chr3L	6477615	6477806	6477615..6477662,6477784..6477806	CG42747-RC,	FBgn0261801,	CG42747,	1	.
CG4402-RA	GGTGGTGGATTATCTGGAAATCGAACAGACGGCCCATCTGGAGGATAGACCCATGCTGCTGATGCAG	67	-	chr2R	17677975	17678042	17677975..17678042	CG4402-RA,	FBgn0034660,	lox2,	1	.
CG14695-RA	AGCGATATGCTGGTGATGCTATATGATCCTGCCTGCTACTACTGGCCCATTCAGAAGAGGATGCTGCGC	69	-	chr3R	6704425	6704494	6704425..6704494	CG14695-RA,	FBgn0037850,	CG14695,	1	.
CG10864-RA	TGGGCGCTCTGATCGTGATCTATGCCATCTGTGGAGCATTCGCCTTCATGCACATCGAGCGCCAG	65	-	chr3R	14236870	14236935	14236870..14236935	CG10864-RA,	FBgn0038621,	CG10864,	1	.
CG7650-RA	AATCCAAACCCGACTAATTAAATTGTAAATTAAAAGTAAAAACTCGTTAATTACCAATCATGGCC	65	-	chr3L	15603378	15603443	15603378..15603443	CG7650-RA,	FBgn0036519,	CG7650,	1	.
CG3428-RA	TATCCAGCATCACCGAACTGACCACCCAAGTGTCCGAACTTAAGCGCCAAATGGAGGATGTGGTG	65	-	chr3L	9479809	9479874	9479809..9479874	CG3428-RA,	FBgn0036005,	pall,	1	.
CG5553-RA	GCTGTCCGTATAAGAACATGGATCAGGGCTCGTTGAAAACCAAGCTGTCCTCCTATGGCCTGTCAGC	67	-	chr3L	20353366	20353433	20353366..20353433	CG5553-RA,	FBgn0259676,	DNApol-alpha60,	1	.
CG7974-RA	CGACCACCTGAGGCAGTCTTCCTCGCACAGATCGGAGGAGATGTTGTCCAACCAGATGCTCAATG	65	+	chr3L	1665807	1665872	1665807..1665872	CG7974-RA,	FBgn0035254,	CG7974,	1	.
CG30083-RA	TCAGGCCCATTTGCATTATCACGGATCCCACAAAAGTGCCAAATGTCAAAACCTTCAAGGCTGCAGGCT	69	-	chr2R	11599495	11599564	11599495..11599564	CG30083-RB,	FBgn0050083,	CG30083,	1	.
CG1799-RA	CCCACTGCTCGACTACACCCGCCTATTCGATCGCAAGTGAGAGAAGAAAAGAGAATCGAGCGCTCGAAT	69	+	chrX	10642355	10642424	10642355..10642424	CG1799-RC,CG1799-RA,CG1799-RB,	FBgn0003204,	ras,	1	.
CG3473-RA	GTACCGTTCTTCTTTCGATCCAGGCCCTGTTGAGTGCTCCAAACCCAGATGATCCACTGGCCAAC	65	-	chr2L	14563210	14563275	14563210..14563275	CG3473-RA,	FBgn0028913,	CG3473,	1	.
CG3613-RA	GCTCGGCTCCATATCCGAAAATACGTTAACCCATCGATTTTCCAAAACCCCAAGAAACCAACCTCAACA	69	-	chr2R	18300659	18300728	18300659..18300728	CG3613-RA,	FBgn0022986,	qkr58E-1,	1	.
CG13636-RA	CCCCAGTGATCCATCAAATGTGCCTCAGTGAAACCAACAGAAACAAAAGATCATCCTACCCCTACCACT	69	+	chr3R	20665475	20665544	20665475..20665544	CG13636-RB,CG13636-RA,CG13636-RC,	FBgn0039232,	CG13636,	1	.
CG33150-RA	CTGGGCTCCTACTGGGAATTCGTGCTCGTCACCACACAGAGGGTATCCTTGGACCGCTACCTAAATG	67	+	chr2R	19430322	19430389	19430322..19430389	CG33150-RA,	FBgn0041234,	Gr59f,	1	.
CR30024-RA	CGGGGTGCGGACTTCAAATCCGTAGTCGATTTGCGTCGAAGTGGTTCGATTCCACCTGGGGGGCG	65	-	chr2R	7245068	7245133	7245068..7245133	CR30024-RA,	FBgn0011987,	tRNA:SeC,	1	.
CG11581-RA	CTACTTCTGCCCCTGATCAACGGAGATGTGAGTCACCTGCCCAGGGAATATATACCGCCCAGTGC	65	+	chrX	14071006	14071071	14071006..14071071	CG11581-RA,	FBgn0030540,	CG11581,	1	.
CG14757-RA	CCGGCAGTTGTCAAAATATTTTGATTTTTCAAATTTTCCGATAGCTCAATACAAATCCAAAAATACCCA	69	-	chr2R	4061048	4061117	4061048..4061117	CG14757-RA,	FBgn0033274,	CG14757,	1	.
CG2210-RA	ACCTTGCCGGCATTTCGTATTCGGGATTTTTTTGCAACGGCGAACACATGAAGCTCCTGATGCTCGG	67	-	chr3R	27571657	27571724	27571657..27571724				0	no match
CG5313-RA	TGGGCTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTTGCTATCCGGCAGTAGCTTGGAGG	69	+	chr2L	10420124	10420193	10420124..10420193	CG5313-RA,	FBgn0032244,	RfC3,	1	.
CG11235-RA	AGGATTTTCATGGCTGGTAGCTAAAGCCTTCCCCGTTTCTCCAACGTTCCCTCTTGCCGTTGCTG	65	+	chrX	20743364	20743429	20743364..20743429				0	no match
CG7594-RA	GCCGATGTTGCCAAAATGCGCAGAGTGACTCCAAGACCTCCAGGATAATAAATGTAGCATATGGCCAAA	69	-	chr3L	15652127	15652196	15652127..15652196	CG7594-RB,	FBgn0014848,	Eig71Eh,	1	.
CG6571-RD	GGACCTCAACGGAGATGGCAAAGTGGACTTGAACGAATTCCTGGAAGCGTTCAGGCTGAGTGATCTGC	68	+	chr3L	20256997	20257065	20256997..20257065	CG6571-RA,CG6571-RB,CG6571-RC,CG6571-RD,	FBgn0004366,	rdgC,	1	.
CG3289-RA	TCTCTCCAAGTTTCCCGTGATCCAGCACGTCTACTTCGGAGAACTGATGACATTCGAGCCCGTCTCC	67	+	chr2L	3378157	3378224	3378157..3378224	CG3289-RA,	FBgn0016698,	Ptpa,	1	.
CG4859-RB	ACCGACTCAGCGGTAGTTTTGTTTGAGCTCGAATCGATCTACTGGATCCACGAATATCGAATCCCGAAC	69	-	chr2R	20562417	20562486	20562417..20562486	CG4859-RD,CG4859-RF,CG4859-RG,	FBgn0035049,	Mmp1,	1	.
CG10753-RA	AAAAATCACTCTGTGTAGTAGCTCAGGAAAAATGTGTTTACTTGGCAACAAATTGAAAGAAGACTCCCG	69	-	chr3L	12726499	12726568	12726499..12726568	CG10753-RA,	FBgn0261933,	SmD1,	1	.
CG7795-RB	ATCGTCCGCGAGATGTGAGGTCGTACACGAATCCATTTAGCGCGATCGGAAAAGAGGTTACCCGG	65	-	chr2L	8317917	8317982	8317917..8317982	CG7795-RD,CG7795-RC,	FBgn0262598,	mtsh,	1	.
CG33333-RA	TCCCTGTCCCAGCCGTTGTAGGAGCTAGTCAAGGAAATGTGTACCATGGTCGCCATCATGGCTAA	65	+	chr3R	13243587	13243652	13243587..13243652	CG33333-RA,	FBgn0053333,	CG33333,	1	.
CG7020-RA	GCCATTTGTGTCCAAGGGGCTAGTTCTGCAGAGAGTGCTCAAGTGTATGTAGATATGAGAGCATTGCGA	69	-	chr3L	251536	251605	251536..251605	CG7020-RA,CG7020-RB,	FBgn0024806,	DIP2,	1	.
CG6544-RD	AACTCGTGTAAGTATTTGGTTTTCATCCTTATCGCCTACATCGCTTGTCATCATCCATCTTTCTATGGA	69	-	chr3R	6598794	6598863	6598794..6598863	CG6544-RD,	FBgn0020439,	fau,	1	.
CG7542-RA	GCAACTCCAGCTACCTGATCGGATCCACCTCTTTTGGAACCTCTATGGGATGTCAAGTGGGATTCCCGG	69	+	chr3L	17543609	17543678	17543609..17543678	CG7542-RA,	FBgn0036738,	CG7542,	1	.
CG10622-RA	CCAAAGCCTTCGAGATCCTCACTGCTGACCCGAAAGTCAAGGGAATCCTGGTCAATGTCTTTGGCGG	67	-	chr3L	5555200	5555267	5555200..5555267	CG10622-RA,	FBgn0029118,	Sucb,	1	.
CG15068-RA	GCAAAGTTTGCAATATACGCGGCGATTAGAATGTGGAAATCAGAATATGAAATAAACTAAAGTCACTGA	69	-	chr2R	14277856	14277925	14277856..14277925	CG15068-RA,	FBgn0040733,	CG15068,	1	.
CG17819-RA	TGGGCCTATATCGCCTAACTGGTCGAGATTGGACTTTTGAGGAATGTTCCATGCGGACAGGGTCTGGTG	69	-	chr3R	17710629	17710698	17710629..17710698	CG17819-RA,	FBgn0038915,	CG17819,	1	.
CG31446-RA	TGCTGATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGTGAATCAAACCATGAACGCAACC	68	+	chr3R	11519147	11519215	11519147..11519215	CG31446-RA,	FBgn0051446,	CG31446,	1	.
CG18808-RA	ACAAAGAAGTGGCGGAAAGGCTGTGCGTAAAACCCATCGAGCTGGCTTTTGATAGGTGTCAGTCCAGG	68	-	chr3L	4806182	4806250	4806182..4806250	CG18808-RA,	FBgn0042131,	CG18808,	1	.
CG10674-RA	AACAGGTGCTCTCCTCCTTTATGTTGAGCGTCAGTGCGGTGGTGATGTCCTACCTCCAGAATCCC	65	-	chr3L	5128969	5129034	5128969..5129034	CG10674-RA,	FBgn0035592,	CG10674,	1	.
CG14829-RA	GCTGGAATCGATTGCCTAGCTCGCTATTCGGATTGTCCAAGGGGTGAAAGTGTGCTGGATGCATATGCT	69	-	chr3L	7230491	7230560	7230491..7230560	CG14829-RB,	FBgn0035751,	CG14829,	1	.
CG14548-RA	TGCGTGCACACAGAGTCTCCGAGTCCGAATCTAGTGGAACGTTGCGACTGTGGATTACGCGAGTTTACT	69	-	chr3R	21831656	21831725	21831656..21831725	CG14548-RA,	FBgn0002733,	HLHmbeta,	1	.
CG5669-RA	ATGACGAGGATCCAGAACTAGACAGTGGCGATGAAGTGAAGATGACAATTGCGGTCAGTGAGCCTGGCG	69	-	chr3R	20049487	20049556	20049487..20049556	CG5669-RA,	FBgn0039169,	Spps,	1	.
CG31663-RA	GCAGCAGGATGATGAAAAATCCGATGCCACTTGATGGACTGCCAACCCAATTCTCTGACCTGCCACAC	68	-	chr2L	1858793	1858861	1858793..1858861	CG31663-RA,CG31663-RB,	FBgn0051663,	CG31663,	1	.
CG33276-RA	AAACAAAAATGGACTATTGCTAATCTGCTTAAGTGGATGCATGCGAATATTTTAACGGAGCGTCC	65	-	chr3L	7633251	7633379	7633251..7633306,7633369..7633379	CG33276-RB,	FBgn0053276,	CG33276,	1	.
CG6026-RA	AGCCAGATCCATCCTTTTCAGAGCTCCACCCTGAATCTCAGACTTCTGTTTCGGGAGTACTCGTGGCG	68	+	chr3R	14868976	14869044	14868976..14869044	CG6026-RB,	FBgn0038676,	CG6026,	1	.
CG31794-RA	GATTCTTATACGCCCAATCATGCTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGC	65	-	chr2L	19409449	19409514	19409449..19409514	CG31794-RA,CG31794-RB,CG31794-RC,CG31794-RF,CG31794-RG,CG31794-RH,CG31794-RI,	FBgn0041789,	Pax,	1	.
CG14483-RA	ACATGGCCTTTCCGGTGACGCTATTCCACTTGTTTAACCAGCCGGAATACTTTGAAGAATGGGTGACC	68	-	chr2R	13473435	13473503	13473435..13473503	CG14483-RA,	FBgn0034248,	CG14483,	1	.
CG32425-RA	TCGACTCCGCATTGGACAGTTGGCAACAGGAGGGAGATGACGATGATTTAGCGGAGGACTTTGAACG	67	+	chr3L	20506628	20506695	20506628..20506695	CG32425-RC,CG32425-RE,CG32425-RA,	FBgn0052425,	CG32425,	1	.
CG32154-RA	TGGCGCATTCTCGCATGGGTATCGATTTGTCCCAAATCTTTGGCAGTCGGTTTGTTGACTTCTGCCG	67	+	chr3L	16232252	16232319	16232252..16232319	CG32154-RA,	FBgn0052154,	CG32154,	1	.
CG15021-RA	TGTGTGTTGTGTTGTTAGGAAAACTCGGAAAAACCGCGCTCGTTTAGCATCGAGTAGAAATGCGCTGTT	69	+	chr3L	4436829	4436953	4436829..4436891,4436946..4436953	CG15021-RA,	FBgn0035544,	CG15021,	1	.
CG5675-RA	ACGCATTGTCCCGAAAATACCAACCTTCCCAAATTCCCTCGCATCCATTAGCTTAAGCATTCGATTGAA	69	+	chrX	17499759	17499828	17499759..17499828	CG5675-RA,CG5675-RB,	FBgn0026313,	X11L,	1	.
CG6456-RA	CCACGCTCCTCGAAATCTGTTTCACACCGGTCAAGTGAGAGCGCTATAATTGAATTGCACTCGTGCCCG	69	-	chr3L	17342631	17342700	17342631..17342700	CG6456-RA,	FBgn0036713,	Mip,	1	.
CG31563-RA	GCTATAAGGCCATAAAACATTTCTATTCAGTTAGCATCCAATCCACCTAAGTTATGCCGATTCGC	65	+	chr3R	1979531	1979596	1979531..1979596				0	no match
CG14383-RA	CCCTCAGTGCCATGAGATATCTAGCCGTCCTGCGAAAATTGTTCAAGGCCACCTTTAAGGGCAAAGCGA	69	-	chr3R	8813286	8813355	8813286..8813355	CG14383-RA,	FBgn0038102,	CG14383,	1	.
CG9972-RA	ATCTTCTGGCGGTCACTTGTACATCAATCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCT	65	-	chr3L	2886268	2886333	2886268..2886333	CG9972-RA,	FBgn0035379,	spz5,	1	.
CG9861-RA	CCAGATGGACAAGTTGCTAAAGGATGGCATGCGAGTACTCAGGAAGGAGCCCCGCTATGTGCTGG	65	+	chr2R	19213631	19213696	19213631..19213696	CG9861-RA,	FBgn0034844,	CG9861,	1	.
CG5103-RA	GAAGCCCCTCGATGTCGGACTAATCGTGAAGCATGGAAAGCTGTGTCGTGGAAGAATCGTCGTGGTG	67	-	chr3L	18285584	18285651	18285584..18285651	CG5103-RA,	FBgn0036784,	CG5103,	1	.
CG31952-RA	TGAAATAATACGAAACTCAATATCTTTTTTGCTGTGTAAATCGACACCAGCAATTCAGCGAACGC	65	+	chr2L	3416730	3416795	3416730..3416795	CG31952-RA,	FBgn0051952,	CG31952,	1	.
CG4802-RA	GCCGGGCAACCTGGTTGTTCCACACGACTTTATCGACAGGACTACTAAACGCCTTCAGACCTTCTACGA	69	+	chr2R	13315943	13316012	13315943..13316012	CG4802-RA,	FBgn0034215,	CG4802,	1	.
CG18455-RA	ATCCTCACAAGCTCCGAAGCACTAAGGCCCAGCTATTCAGATTGTTTCAATTGTATTTCTAAGTTAGCC	69	+	chr2R	3929583	3929652	3929583..3929652	CG18455-RA,CG18455-RB,	FBgn0025360,	Optix,	1	.
CG11020-RA	CGCCTTCTAGTGTAGTACAGTGCAGAGTAGCTTTAGTGGATTAGCCGCCTTGAAGTGTGCCCTGCT	66	+	chr2L	5363168	5363234	5363168..5363234	CG11020-RA,	FBgn0016920,	nompC,	1	.
CG3506-RA	AGGCACCTCGTTCAGACATCAAAACGAGTGCATTACCAGAGGCTGCCATGTAGTGATCGCCACTCC	66	+	chr2L	15073045	15073111	15073045..15073111	CG43081-RA,	FBgn0262526,	vas,	1	.
CG3287-RB	TTGCTGCGCTACCTGTATGTTTTCATCGGATCGGTGCTGAGTTTGGACACGTGGTTGCTGCGATC	65	+	chr2R	2701116	2701181	2701116..2701181	CG3287-RB,CG3287-RC,	FBgn0028954,	CG3287,	1	.
CG1486-RB	TTCATTTCCACTTTCCCTACTTAAACGAAAAGAATTCCAAAGAGGATGATTGTTCGCCCGAAAAGATGA	69	+	chrX	21198625	21198694	21198625..21198694	CG1486-RA,CG1486-RB,	FBgn0031174,	CG1486,	1	.
CG8069-RB	CAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTCACAAAGCAACAGCG	65	+	chr2R	5002023	5002088	5002023..5002088	CG8069-RA,	FBgn0033380,	Phax,	1	.
CG16766-RA	GGGATCGTTCTTCATTCCCCTCACCGTGATGCTCTACGTTTACGTGAAGATTGGTTATGTCCTCACGT	68	+	chr3R	13569925	13569993	13569925..13569993	CG16766-RA,	FBgn0038541,	TyrRII,	1	.
CR33363-RA	GTTCTCGTCCGATCACCGAAATTAAGCAGCGTCGGGCGCGGTTAGTACTTAGATGGGGGGCTTAG	65	.	.	.	.	.	CR33363-RA,	FBgn0053363,	5SrRNA-Psi:CR33363,	1	.
CG2947-RA	GCCGACTTCGTCGATGACGGTTTGGACTAAGGTTTAGAAATGGGGCAGTAGTAAGACTGAAACATGCGT	69	.	.	.	.	.	CG32789-RA,CG2947-RA,CG2947-RB,	FBgn0260484,FBgn0029676,	HIP,HIP-R,	2	.
CG7610-RA	CCGCCCTCACATAAGCGAATGGAATGTGTTCGAACAGCTCTAACGATTCATACAGCTAATTGCAT	65	-	chr3R	25573524	25573589	25573524..25573589	CG7610-RA,CG7610-RB,CG7610-RC,	FBgn0020235,	ATPsyn-gamma,	1	.
CG31127-RA	TCTTCGAGCAGCAACGCATGAGTCTAAAGAGAAAACTGGTGGAGAGTCGCCTGATGGCACCGTCG	65	-	chr3R	20453697	20453762	20453697..20453762	CG31127-RA,	FBgn0046685,	Wsck,	1	.
CG3653-RB	TCGACAGTGTCACATTAAGAATCTAAAGAATCAACAGGAGACCGCCTACAAGGGTAGTCCACAGGCCAA	69	+	chrX	3025566	3025635	3025566..3025635	CG3653-RB,CG3653-RA,	FBgn0028369,	kirre,	1	.
CG5405-RA	TCTGCCACAGCATGCACAGCAATTGGGTGATATGTTCAATGGACTGACTGTTAGTTTCGCCACCAAGGA	69	-	chr3R	19824745	19824814	19824745..19824814	CG5405-RB,CG5405-RA,CG5405-RC,CG5405-RD,CG5405-RE,	FBgn0020647,	KrT95D,	1	.
CG8971-RA	AGCAGGAGATACCCGGCATACTGAAGTCACAGTCCGTGGACTTCCTACGCCTGCCCTACTGTAGTTAAT	69	-	chrX	9042402	9042471	9042402..9042471	CG8971-RA,	FBgn0030092,	fh,	1	.
CG8819-RC	CATTTTTTTAAGGTATCTAGTAATTATGTACACATACATACATAAAATGAGAACGTTTGTGGAAGGACA	69	-	chr2R	8399116	8399185	8399116..8399185	CG8819-RC,CG8819-RA,	FBgn0033749,	achi,	1	.
CG4420-RA	AGCCAGAAACCGGATTGCAATAGGATGATGAACAGACTGGACCCCATTAACTGGAAGCCGTTCCAACGA	69	+	chrX	16338841	16338910	16338841..16338910	CG4420-RA,	FBgn0030753,	rngo,	1	.
CG9410-RB	ACTCCATGCAGGACATGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCGTATGTGA	69	+	chr2R	2556998	2557067	2556998..2557067	CG9410-RA,CG9410-RB,CG9410-RD,CG15908-RB,	FBgn0033086,FBgn0033085,	CG9410,CG15908,	2	.
CG32688-RA	TTTTTGAAAGTGATTAGCAGTAAAACTAGCCTAAGTAGCAATACCATGACGACAACAATAAGCAAGCAG	69	-	chrX	10133230	10133299	10133230..10133299	CG43388-RD,CG43388-RE,CG43388-RF,CG43388-RG,CG43388-RH,CG43388-RI,CG43388-RJ,	FBgn0263220,	Hk,	1	.
CG8933-RC	CGCCGCAATTTCAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCA	69	+	chrX	15888518	15888587	15888518..15888587	CG8933-RB,CG8933-RA,CG8933-RC,	FBgn0000611,	exd,	1	.
CG5450-RA	CCTCGCGTTGATTCGTTTTTTCCCAAATTCCAAAAACTTCGCTGTGCTGACTTAGCCACTCTGCTGCCA	69	+	chr2L	1345044	1345113	1345044..1345113	CG5450-RA,CG5450-RB,CG5450-RC,	FBgn0026141,	Cdlc2,	1	.
CG6972-RA	ATGATGTGATCATCATTCTGCACCAGGATCGAAGGGATCACACACTGATGAACTACGCCCAGGAC	65	+	chr3R	18529204	18529269	18529204..18529269	CG6972-RA,	FBgn0039008,	CG6972,	1	.
CG4376-RC	AGATTTATTATACCTACACTCGTAACAGTAGCTGCAGAAGAACTTCAGATCATCATGTGAGGATGAATA	69	-	chrX	1919399	1919468	1919399..1919468	CG4376-RC,CG4376-RB,CG4376-RA,CG4376-RD,CG4376-RE,	FBgn0000667,	Actn,	1	.
CG30293-RA	TGGTGGCATCTCCGAAGAAGCGGGACAATTTCTATAGCTCTATGTTGGAGTTCATGTTCAGGTGGGGAT	69	-	chr2R	16951810	16951879	16951810..16951879	CG30293-RA,	FBgn0050293,	Cht12,	1	.
CG9537-RA	CGCTCTCGGCTTTTGTGAACAGGATGCAAGATTTTCCCGATTACCACGATGTGCTTCAAATACTGGAAA	69	+	chr2L	6485988	6486057	6485988..6486057	CG9537-RA,	FBgn0031820,	DLP,	1	.
CG30369-RA	GCTCCTCGTGATCTTAGAGACTATTTTATGTCAAGCTGGAAAAACGAGAGAAAATGATATCCCCCCTTG	69	+	chr2R	4147118	4147187	4147118..4147187	CG30369-RA,	FBgn0050369,	CG30369,	1	.
CG12439-RA	GCCGTTGGATCACTGTGCATTGTGCTCGAGGTGTTGACACAGCGGAAGATGAAGAATTTGGTGGGACAG	69	+	chr2L	9077598	9077667	9077598..9077667	CG12439-RA,	FBgn0032094,	CG12439,	1	.
CG18095-RA	ACGGCTGGACCAAAATCTCCTGAGCAGTCTTCAGTTTCTCAGTCAACGAGGTTTGGCTCGACTGGTTCA	69	-	chr2L	14030830	14030899	14030830..14030899	CG18095-RA,CG18095-RB,	FBgn0028872,	CG18095,	1	.
CG12446-RA	CATTCCCGTCTCTGGCCACATAAACCACCCAGTGCTATGAGCATCCAAGGCCTGATCTTTGGTGC	65	-	chrX	22211800	22211865	22211800..22211865	CG12446-RA,	FBgn0031201,	CG12446,	1	.
CG32636-RA	GCGCAAGCGAGAGTCCTCTAGTCGACGTGGATGTCTCGCATATTAAACGGGTCTTGACTCTACCGGTAT	69	+	chrX	13226464	13226533	13226464..13226533				0	no match
CG12386-RA	GGTGCGAGTTTCAAAATTGATTCCCCACGAGTTGTACAACTCTTCCACTATGGATAACGACATTG	65	-	chr2R	7228564	7228629	7228564..7228629	CG12386-RA,	FBgn0011554,	etaTry,	1	.
CG8050-RA	CAAGATACACGTGATTTAAAAAATGATTTTTGATTAATTTTCGGGGAACTATTGTTGCAAAGTATCCAA	69	-	chr3R	10394772	10394841	10394772..10394841	CG8050-RA,	FBgn0004629,	Cys,	1	.
CG10632-RA	TCGAAAAAGATTTGGGCTTCCTACGGATTGGTTCTCTGAATGTCCGGGTAAAGAAGACCACCGAGGCGT	69	-	chr3L	12531519	12531588	12531519..12531588	CG10632-RH,CG10632-RG,CG10632-RI,	FBgn0036302,	sowah,	1	.
CG13047-RA	GAGTTGTAGCTCCACTGGCTGCTCCTCTGGCTGCTCCCCTGGCCTACGCTAATGCTCCTCTGTAC	65	-	chr3L	16278257	16278322	16278257..16278322	CG13047-RB,	FBgn0036594,	CG13047,	1	.
CG12425-RA	GCGCTTGAGTTCGTGTATTTCCGGTTGAACAAACACATAAGCGAAACATAAAAGAAAGGCGAAAAAAAT	69	+	chr3R	23973265	23973334	23973265..23973334	CG34354-RA,CG34354-RE,CG34354-RD,	FBgn0085383,	CG34354,	1	.
CG4459-RA	TCGATGTGCAGCTCACGATGTACGCCAATGACCTGGACCAGAAATCCAAACAGAAGCACAGCTATTGCC	69	-	chr3R	15753042	15753111	15753042..15753111	CG4459-RA,	FBgn0038753,	CG4459,	1	.
CG8924-RA	TCCCATGCCGGAAACATAATAATCACAACAAACTCAGGAAAACTCTCAACCGTCCCAGCGAGCATAACT	69	+	chrX	15837767	15837836	15837767..15837836	CG8924-RB,	FBgn0030710,	CG8924,	1	.
CG13872-RA	CCGTGGAAGCAGTGTCGAAAGGATAGCCCGACTAAAGGCAAAGGAACAGCTTTTGGAAGTGGAAGAGCA	69	-	chr2R	15766973	15767042	15766973..15767042	CG13872-RA,	FBgn0034477,	CG13872,	1	.
CG1895-RA	TGGAACCACGCCTTGTGTACGAGATCTATGTGAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCA	69	+	chrX	11733955	11734024	11733955..11734024	CG1895-RA,	FBgn0030339,	Cyp28c1,	1	.
CG10664-RA	CCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAGAAGTGGAAGAACTAAGTGCGCTGTCGTT	69	+	chr2L	19959831	19959900	19959831..19959900	CG10664-RA,CG10664-RB,	FBgn0032833,	CG10664,	1	.
CG1829-RA	GGGGCGATTGTGAGCATCAAGGACGTGTGTGATCTGTACAACACCGACATGATAGCCAGCATCGCATTC	69	+	chrX	20530920	20530989	20530920..20530989	CG1829-RA,	FBgn0031126,	Cyp6v1,	1	.
CG5057-RA	TGTCTGCACCGCTAGAGAACCTTGAGACCCAGCTAGAGATGTTCATCGAGAATGTTCGTCAGATCCGCA	69	+	chr3L	16225302	16225371	16225302..16225371	CG5057-RB,	FBgn0036581,	MED10,	1	.
CG6704-RA	AGCATGCCCATTTGTCCAATGTACTCTTTCTGCGCTACGAAGACATGTTGGCTGATCTGCCAGGTGCAA	69	-	chr2R	9857698	9857767	9857698..9857767	CG6704-RA,	FBgn0033887,	CG6704,	1	.
CG18669-RA	TGGAATGAGACCGCAAAGTATCTGCCAGAAGGTGTGTCCACAATGCATCCGAGTGACTTTACAGCCGGA	69	-	chr3R	20192603	20192672	20192603..20192672	CG18669-RB,	FBgn0261993,	CG42811,	1	.
CG13919-RA	AAGTGATGATCTGCCTAACGCTGGAGTACCCGCAACAGATTCCCATATACGTGACCGTTGCCCCG	65	+	chr3L	1645797	1645862	1645797..1645862	CG13919-RA,	FBgn0035248,	CG13919,	1	.
CG3267-RA	CCAAGTTTGGAGTCTTCCGCATGTAAATCCAATTTGTATGCTGGAGAAATTTAATCGGAGCGCATTTAC	69	+	chr2R	2636133	2636202	2636133..2636202	CG3267-RA,	FBgn0042083,	CG3267,	1	.
CG30265-RA	GATGGACCTTCTCAGAAGTCGATGATATTAAAGTTCCACTAGATCGATAGCACTTAAGTCTCCAGTGTA	69	+	chr2R	18721954	18722023	18721954..18722023	CG30265-RA,	FBgn0050265,	CG30265,	1	.
CG31880-RA	TCATTCGCATGGCAATCTTTCCAGTCATTTGTCTGCTCATCCAAATTGCGAACAGATTCCTCGGGATGG	69	+	chr2L	9834810	9834879	9834810..9834879				0	no match
CG30469-RA	TGCCACCCCGAGTCATGCTGTATCAGGATGCAAATGACGGTGAACTAAAGATGATTGGCTATGTGGCAA	69	+	chr2R	11389898	11389967	11389898..11389967	CG30469-RB,	FBgn0050469,	Ir52b,	1	.
CG7012-RA	TTCCGGCATGTATTCCACTTGGACTGAATCCACCTGGTCACAGTTCAGTGCACGCATCTTCCTGC	65	+	chr3R	20679610	20679675	20679610..20679675	CG7012-RA,CG7012-RC,CG7012-RD,	FBgn0039234,	nct,	1	.
CG11236-RA	GGACACGGTCGAAGATTTTTGGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGC	69	+	chr2L	6803420	6803489	6803420..6803489	CG11236-RA,	FBgn0031860,	CG11236,	1	.
CG32858-RB	GGTTGCTGCACGCGTCATCAGTATCACAATCACACACATACTTCCCAACCAAGCGGGGATTCCCTAATT	69	+	chrX	7879585	7879654	7879585..7879654	CG32858-RA,CG32858-RB,CG32858-RD,CG32858-RE,CG32858-RF,CG32858-RG,	FBgn0003447,	sn,	1	.
CG10019-RA	TCGGAGCTGCATTAGTCTCAATCAAATGGAGCCCTATCTGCAGGCGAACTTCTGCCAAAGGCACATGTT	69	+	chr2L	3750558	3750627	3750558..3750627	CG10019-RB,	FBgn0031568,	CG10019,	1	.
CG40067-RA	GTGGTACCTCGCGAACTGTAGCAGGAAATGGAAACGTAAACCATCGTTTGCCTCGTACAAGTGCCAGCT	69	+	chrU	1243016	1243085	1243016..1243085	CG41520-RA,CG41520-RB,CG41520-RC,	FBgn0087011,	CG41520,	1	.
CG1249-RA	ACGAAGCCGCGCTGAATACTTTTGCCAACAATAAACGCAGAAAACCAACTGAGAAGCGAAACAAGAAGA	69	-	chr3R	2171533	2171602	2171533..2171602	CG1249-RA,	FBgn0261789,	SmD2,	1	.
CG10706-RE	GCCAACCAACTGCAAAACATCCACGAACATGGCAAATTCTCGTGTCCGTCTGTCTCGAATTTGTGTGCA	69	+	chrX	5294965	5295034	5294965..5295034	CG10706-RH,CG10706-RI,CG10706-RK,CG10706-RL,CG10706-RM,CG10706-RN,	FBgn0029761,	SK,	1	.
CG7391-RA	ATCAGAGCAGCTCCTCCTATCCCGCTACACATATCTGCAGCCCATGATGTCGATGGGATTCGCAC	65	-	chr3L	7758250	7758315	7758250..7758315	CG7391-RA,CG7391-RD,CG7391-RF,	FBgn0023076,	Clk,	1	.
CG13630-RA	TTCCCACAGACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGATTACGCCGATCATCC	65	-	chr3R	20544635	20544700	20544635..20544700	CG13630-RA,	FBgn0039219,	CG13630,	1	.
CG13608-RA	CAATCCGGGCGATACCGCATAACCACAAAGCGAAACAGGCCTCTTACCTACGAGATGGCCAATCC	65	-	chr3R	19988986	19989051	19988986..19989051	CG13608-RA,	FBgn0039159,	mRpS24,	1	.
CG7538-RA	TGCCACCATTCAGAAGTTGAGCAAGGATCCGCGTATCGTAGAGCGTGTAGTAGCATCCATGGCGC	65	+	chr3R	4092159	4092224	4092159..4092224	CG7538-RA,	FBgn0014861,	Mcm2,	1	.
CG9391-RB	CTAACCAAAAGCATTTTAAATATACCGACCATGTACCTAACAAACAAATTGACTACGCCTAGTCACGGA	69	-	chr3L	21259813	21259882	21259813..21259882	CG9391-RA,CG9391-RC,	FBgn0037063,	CG9391,	1	.
CG12009-RA	GGACTCTCCGATCATCAATATAATGCAGGTGCAACATATGCCCATGGACTACAGAATCCCAGTCCGGGT	69	+	chr3L	3297867	3297936	3297867..3297936	CG12009-RA,CG12009-RB,	FBgn0035430,	CG12009,	1	.
CG14377-RA	CTTAAGTGCTCCTGCTTACACTGCTCCTGTGACCACATATGCCGCTGGAACTGCCTATGCTGCTC	65	+	chr3R	9223785	9223850	9223785..9223850	CG14377-RA,	FBgn0038148,	CG14377,	1	.
CR41110-RA	AAGAGACATGTGCAATCGGTCAAAACGTGGCGCATATAACTTAAAAGCAAATAGTAACATGGGAATATA	69	-	chrX	22256758	22256827	22256758..22256827	CG9559-RA,	FBgn0000719,	fog,	1	.
CG13474-RA	TATAGGAAGTTGTGACTCCGAGCTGGACATGCTAAGCCAACTCTACGGAGCCAGAAGTGCCCAGG	65	-	chr3L	14689929	14689994	14689929..14689994	CG13474-RA,	FBgn0036439,	CG13474,	1	.
CG4775-RA	ATGCACCCGCGTCTCAAGTGACTGAACAGGTAGCGAAGTGACCCTGGATGAGCGTGGGTAGGCAG	65	+	chr2L	1158753	1158818	1158753..1158818	CG4775-RA,	FBgn0031312,	Tango14,	1	.
CG10164-RA	AGAACAACCTGAACCATCGAGAGTTGTCAACACGGAGCCTATTCGACTGAACGTGGAACCCCAATCCCA	69	-	chr3R	19381622	19381691	19381622..19381691	CG10164-RA,CG10164-RB,	FBgn0039088,	CG10164,	1	.
CG14493-RA	AATTTAATTATGTCACAGTCGAAGGAGGGTGAACCGGTGCCCGTGCCACAGCCGTATGCCCAAAG	65	-	chr2R	13877348	13877413	13877348..13877413	CG33996-RB,	FBgn0034286,	dpr13,	1	.
CG4523-RA	GGAGAAAAGCCTTCTACTTGTTACTCTGAGAAAATCAAATGGAAAAGCGTGTGATACCTATATTTTACA	69	+	chrX	6580945	6581014	6580945..6581014	CG4523-RB,CG4523-RA,CG4523-RC,CG4523-RD,CG4523-RE,CG4523-RF,CG4523-RG,CG4523-RH,	FBgn0029891,	Pink1,	1	.
CG40166-RA	TCGGACCCGTGCCTTGTCCCGTAATCGATCCCGTACTAGGTCCTGTACTAGTTCCCGTACTAGGTC	66	+	chr3RHet	560055	560121	560055..560121				0	no match
CG5521-RA	AGCGAACACAATCGGGATTACAGGCGGGACATATTGCCCACTGAGTTTTGCGATGTGCTGATTGTGGTT	69	+	chr3R	22801450	22801519	22801450..22801519	CG5521-RA,CG5521-RB,	FBgn0039466,	CG5521,	1	.
CG10598-RB	CGTCAGCGGTTGGAATTAGTTTGGTCAGCTGTTTGATACCGATTGTATCCCATTCGCTACTCGAGATGA	69	-	chrX	17120417	17120486	17120417..17120486				0	no match
CG5486-RA	AACTCGTTGGTACATCTCATAGAAGGCGAAACACTGACGGTGGAGTTGGGTAAGACGCTGGAGCC	65	+	chr3L	5753364	5753429	5753364..5753429	CG5486-RA,CG5486-RB,CG5486-RD,	FBgn0016756,	Ubp64E,	1	.
CG13510-RA	ACGCCACACATTAAACTCATGAGACTCACACAGGAAACAGAAATGCGACAAGATATCTTGGGACA	65	+	chr2R	18546633	18546698	18546633..18546698				0	no match
CG31973-RB	GGCGTCCGGTACATGAAAACGTGTCAACCATGCCCCGACATTTACCCCTGGACTGGAAAATCTGGAATT	69	-	chr2L	26565	26634	26565..26634	CG31973-RA,CG31973-RB,CG31973-RD,CG31973-RE,	FBgn0051973,	Cda5,	1	.
CG9213-RA	CCGACATTGTGTCCAAGCACAAGAATCCCAACGATGACTTGGATGACATATTCGCTGATAAGGTGCGCA	69	-	chrX	15467147	15467216	15467147..15467216	CG9213-RA,	FBgn0030655,	CG9213,	1	.
CG8449-RA	TCTTAGTGACTACACCACATCGTTGACATATCTAATGCGCTACCCAAACAATGTTGATGTCCATCTGGT	69	-	chr3R	9096079	9096148	9096079..9096148	CG8449-RA,	FBgn0038129,	CG8449,	1	.
CG5166-RB	AGCAAGAGCTTGAGTCAGGCTTCCTTTGGGTTTTAGTGCCTCCGTTGTCTCCGAATTAATGAAAAATTA	69	+	chr3R	11242753	11242822	11242753..11242822	CG5166-RC,	FBgn0041188,	Atx2,	1	.
CG6718-RC	TGCCAACAACCCGACTCTAGACGCCATGACCGAGATTCACGAGTACAATATGGCCTTGCGTAGCG	65	-	chr3L	9854249	9854314	9854249..9854314	CG6718-RB,CG6718-RC,CG6718-RD,CG6718-RA,	FBgn0036053,	iPLA2-VIA,	1	.
CG4936-RA	AGGATGATGCGGAAGTCGATCTGAACTCAACCGAAGAGGAGTTCGTTCCCTCAAAAAGCGTTCGCG	66	+	chr3R	15858448	15858514	15858448..15858514	CG4936-RA,	FBgn0038768,	CG4936,	1	.
CG14072-RA	GATTCGCCCGATTATTACACCCAAAAGGAGGAATTAATCTTCAAGGTCGTGTGTGAATTGCGGGG	65	+	chr2L	10937643	10937708	10937643..10937708	CG14072-RA,CG14072-RB,CG14072-RC,	FBgn0032318,	CG14072,	1	.
CG10725-RB	GGCTCGCTGTGACAAGTACTACATTTGCATGGATGGTCTTCCTCAAGTCCAGAACTGCACAAGTGGCCT	69	+	chr3L	13431662	13431731	13431662..13431731	CG10725-RB,	FBgn0036362,	CG10725,	1	.
CG5183-RB	CCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGGTGATGAAGGTGTTGTTCCTGGCCA	65	+	chr2L	10427313	10427378	10427313..10427378	CG5183-RB,CG5183-RC,CG5183-RA,	FBgn0022268,	KdelR,	1	.
CG30409-RA	GCCGCTTGCAAGGGAAGGCTCTACAAATGCAACACCATCGAGTCCGAAAGTTTATAATCTTTGTGGGGA	69	+	chr2R	19242389	19242458	19242389..19242458	CG30409-RA,CG30409-RB,	FBgn0050409,	CG30409,	1	.
CG1938-RB	AGCAGTGCTCGATCATTCAATGGTCCGGTAGTTGGTGTACGGGCTTTTTTATCAGTTTCGCAAGGGGCT	69	+	chrX	11056989	11057058	11056989..11057058	CG1938-RD,CG1938-RB,CG1938-RA,CG1938-RC,	FBgn0030276,	Dlic,	1	.
CG9206-RA	GCAAACTCCGATCTTCAGCTCATTGCCCAACATCTTCTGGACAAGGAGTACGACATCATTTCTGCAGCC	69	+	chr3L	13926273	13926342	13926273..13926342	CG9206-RA,	FBgn0001108,	Gl,	1	.
CG12796-RA	GCTGCGTGTCCATGTTGACTCTGATCTCGATTGCGGTGGATCGGTATATAGCAGTCGTCTATGCTCTGC	69	-	chrX	6726225	6726294	6726225..6726294	CG12796-RA,	FBgn0029909,	CG12796,	1	.
CG5490-RA	GCTGTTTCAGTTCGATCCCGACGATGAGCTATTGTTCCGTTAAAGAGAAGCCTCCAAGAAGAACACTGC	69	+	chr3R	22666886	22666955	22666886..22666955	CG5490-RA,CG5490-RB,	FBgn0262473,	Tl,	1	.
CG12679-RA	CCTGGCCCTTATGACCTACGCACTCACTGAGGGCTAATTGCTAAAACTTAAATTTGATCGGTTCGCGAA	69	-	chrX	20246814	20246883	20246814..20246883	CG12679-RA,	FBgn0031103,	CG12679,	1	.
CG8956-RD	GCCGAGGGAAGACTGGTGAATTTGTCCTGTTCCACCATTTCGTCCTTTGTCGTATCCGTGGCCTCATC	68	-	chr3R	12804584	12804652	12804584..12804652	CG8956-RC,CG8956-RD,	FBgn0015011,	Ahcy89E,	1	.
CG11165-RA	AGAGCAATATACAACTCTTCCGAGAAACTATAATATACCAGTTAAGATGGAGGATATTTCGCATGAGGA	69	+	chr2R	3837347	3837416	3837347..3837416	CG11165-RA,	FBgn0033238,	CG11165,	1	.
CG5932-RA	ATCCGGCTGGATCCTCTAGCAACCAGGGCATCCACTACCTGCAGCTATGGAAGTCCCTCAAGTTC	65	+	chr3L	20454759	20454824	20454759..20454824	CG5932-RA,	FBgn0036996,	CG5932,	1	.
CG8827-RA	CCGCCTGCATCAAGGCTGGCCAATATGATCCCGACAATGTGGAGTTGCCTCTGGATAATTGCGATATCT	69	+	chr2L	13908688	13908757	13908688..13908757	CG8827-RA,CG8827-RB,	FBgn0012037,	Ance,	1	.
CG8600-RA	TCTGCGGGGAAAGACGTATGAGCATGAGATTAGCTATGCCTAATATTGGGGTGTTCAGGGGTGTCCCAT	69	-	chr3L	7327168	7327237	7327168..7327237	CG8600-RA,CG8600-RB,	FBgn0035765,	CG8600,	1	.
CG32951-RA	ACTCGTGCAATAGCATCAAATTAAAGTTGTATTTTAATTAAAAGATAAACTTTTTTAGGCGTTTATTCT	69	-	chr2L	2758481	2758550	2758481..2758550	CG9960-RA,CG9958-RA,	FBgn0031454,FBgn0031455,	CG9960,snapin,	2	.
CG12541-RA	GGGCATGGTGCACAATCTCAATATGCCGACGTGTCAATTTGCGGCCTATAATCCCAACATTTATGCCAA	69	-	chrX	6925869	6925938	6925869..6925938	CG12541-RC,CG12541-RD,	FBgn0029930,	CG12541,	1	.
CG9265-RA	GGCTGCACCTTTTGGATACACCTGACCATCTGATCGAGCGGTCGTTCAATGTGAATGTCATGGCACACT	69	-	chr2L	21059931	21060000	21059931..21060000	CG9265-RA,	FBgn0032910,	CG9265,	1	.
CG13742-RA	GGAACTTCCTGTCATAAGCATTCAAAACTTCCGGCACCTGTCTGTCGTCGCAAAATCAGATGGCCACGT	69	-	chr2R	4972944	4973013	4972944..4973013	CG13742-RB,CG11778-RB	FBgn0033372,FBgn0033371	CG13742,CG11778	2	.
CG18145-RA	AGCTGCGACTACTTCTCCTCCGTCTAGGTCGTTTATGGAGCTGGTTTCTACCGCTGACTGCTGATAGCT	69	-	chr2L	10199789	10199858	10199789..10199858	CG18145-RA,	FBgn0032189,	Ripalpha,	1	.
CG8064-RA	CCAGGACGCACATGTTCTTCACGTGTGGAAAGGATGGAAAGGTGAAGCAGTGGGATGGCGATAACTTCG	69	+	chr3R	14111416	14111485	14111416..14111485	CG8064-RA,	FBgn0038597,	CG8064,	1	.
CG5371-RA	GTGGGACAAGGTGCCAACGAACCTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAGGATGCACG	65	-	chr2L	10325730	10325795	10325730..10325795	CG5371-RA,	FBgn0011703,	RnrL,	1	.
CG5023-RA	TAATTCACAATGGCTCCACGCAACAAGGAACAGGAACAGGAAGTGCTCAACTGGGTGTTCGCCGT	65	.	.	.	.	.	CG5023-RA,	FBgn0038774,	CG5023,	1	.
CG8039-RA	CCTTCTCCACCAAAACTGCGGAACATGTAATTGAAAATCAGGAGGAACAGAAGAAAGAGGCTCCGCC	67	+	chr3R	4500027	4500094	4500027..4500094	CG8039-RA,	FBgn0037608,	mRpL19,	1	.
CG13722-RA	ACCACCGGTAATTCCCACTTCACCACCAGTACCAAAATATCTGCCACCTACAAACCCACCAACGC	65	-	chr3L	4485956	4486021	4485956..4486021	CG13722-RA,	FBgn0035553,	CG13722,	1	.
CG9257-RA	CGGGTACAGGAACATGACGAGGTGCTCTACAGGACCGAGCGGTATCACACCACTACATTTGGGTACGAT	69	+	chr2L	21103185	21103254	21103185..21103254	CG9257-RA,	FBgn0032916,	CG9257,	1	.
CG40119-RA	CACTTGGCTAAAAATGGTCATATAGATTTCGTTGGAAATTTAGTTACGAGTTCAGGTATGACATTCCAT	69	.	.	.	.	.				0	no match
CG4428-RA	CTGCCGTGATGCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTTCTACTCCAT	69	+	chr2L	1081767	1081836	1081767..1081836	CG4428-RA,	FBgn0031298,	Atg4,	1	.
CG7486-RC	CAGCAGGCAGGAGATCCACTTCGCTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTG	65	-	chrX	528894	528959	528894..528959	CG7486-RD,CG7486-RE,CG7486-RF,	FBgn0020381,	Dredd,	1	.
CG32594-RB	GCGATGAACTGAGGAGACCTACGCATATACCTAATTAGCTAGGGAGAAGCGAACTAGGAGATATAAACC	69	+	chrX	14935787	14935856	14935787..14935856	CG32594-RB,CG32594-RC,	FBgn0052594,	be,	1	.
CG12622-RA	ACGAGTTGTCCAGAATTTTGAAGCATGACCTGAAGCTCAAGGAGCACAGTCGCTTCTACTGCCTGGCCT	69	-	chrX	11306760	11306829	11306760..11306829	CG12622-RA,	FBgn0030297,	Gr10b,	1	.
CG4580-RA	TGCAATATTTCTATTGGATGAAACCATGGGTGGCAGAGAATCCACGGAGTGTGTGTCACAGGTGCG	66	+	chr2L	16489107	16489173	16489107..16489173	CG4580-RA,	FBgn0032585,	CG4580,	1	.
CG1674-RD	AAAATTAATGTATTAGTATGTTCCCCAGTAATAAACACGTACAGTGCAGTCTTGATAGTTTTCCGGTGC	69	+	chr4	261730	261799	261730..261799	CG1674-RD,	FBgn0039897,	CG1674,	1	.
CG30327-RA	GCTGAGGGAGCTGTATGCCAAGTACACGGCAGCAAGTAAATTGGACATTAAGGTCATGCACCAGGGTCG	69	+	chr2R	17955477	17955546	17955477..17955546	CG42257-RI,	FBgn0259142,	Snp,	1	.
CG5983-RA	CATGCAACCGGGCGTACTCAAGCTCATTTTTCGAGCGGTCCTTGTCCCAGGGGAAGATCTGCATC	65	+	chr2L	12916287	12916352	12916287..12916352	CG5983-RA,CG5983-RB,	FBgn0040508,	ACXC,	1	.
CG12602-RA	CCGAAGTACTGTGGAACATGGTGTTTTCCATGGGATTCAAGTACGACAGCTATATTGGCGGCATTCTCA	69	+	chr2L	11743839	11743908	11743839..11743908	CG12602-RA,	FBgn0032373,	Vha100-5,	1	.
CG1668-RB	CGCCTGCGTGATGAAAAAGCTGCAGATAATGGATGAATCCGGTAAGCTGAACAAGGAACACGCCATCGA	69	+	chrX	20291503	20291644	20291503..20291531,20291603..20291644	CG1668-RA,CG1668-RB,	FBgn0011280,	Pbprp2,	1	.
CG18249-RA	TCCGCCGGGAGTGACTGGCATACACCCCTACTGGACTCTTAGAGATATCCTTGCATTTGTTACGCTCCT	69	+	chr3R	4047355	4047424	4047355..4047424	CG18249-RB,CG18249-RC,	FBgn0037553,	CG18249,	1	.
CG13806-RA	CTCCAACGGATGGGTGAACATTCCCGTGGAATCGTGCGACGTGGCTAATGGATACTACTGCAACG	65	+	chr3L	2266749	2266814	2266749..2266814	CG13806-RA,	FBgn0035325,	CG13806,	1	.
CG13358-RA	AACCGGACTTGGACTTGAGGCAGGGACCCAACTATATGGACTACCTGTGGTACTTGGCGATGGAG	65	-	chrX	699364	699429	699364..699429	CG13358-RC,	FBgn0026874,	CG13358,	1	.
CR32862-RA	TTCCTCCGGAGTGAGGCTTGGCCATTGTACCTCGGCTGAGTTGACCTCTGCGATTATTCCTAATGTGAA	69	-	chr3R	773707	773776	773707..773776	CR32862-RA,	FBgn0004183,	snRNA:U1:82Eb,	1	.
CG11280-RA	AACCTATAGAACACTGAAGGATCTCCAATTCTATCAGCACTTTGCCAACACTACTGTTTTCCTCGTCCC	69	+	chr3L	13110846	13110915	13110846..13110915	CG11280-RA,	FBgn0010452,	trn,	1	.
CG16712-RA	CCGCTGGTATTGATGGCAATGGTCTCATCAAGTGTGCCGCTTTTATACCCAGCTTCAGTTATCATCCCG	69	-	chr2L	3696387	3696456	3696387..3696456	CG16712-RA,	FBgn0031561,	CG16712,	1	.
CG8191-RA	GCGTGCCCAACTACCCCCCAATTCCTGGACACATTTGCTGGAGCTGCTAAATAAAGTGGCATTCGTTTT	69	+	chrX	15627185	15627254	15627185..15627254	CG8191-RA,	FBgn0030675,	CG8191,	1	.
CG18773-RA	AGAGCATCAAACAGTTCCAAGTTTTCTAACAAACACCACACAGCTCCAACATGAAATTCCTCATCGTCT	69	.	.	.	.	.	CG18773-RA,	FBgn0020643,	Lcp65Ab2,	1	.
CG5537-RA	CCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACTAGATACTTGGGTCTATCTCGCAG	69	+	chr3L	5804981	5805050	5804981..5805050	CG5537-RA,	FBgn0035639,	CG5537,	1	.
CG12078-RA	ATGGAGCCACCATCTATGTCTACAAGCGCCCCTATTTGGATCACTTCCTCGATCGCGTATCCAAGTGGT	69	-	chr3L	3243714	3243783	3243714..3243783	CG12078-RA,CG12078-RB,	FBgn0035426,	CG12078,	1	.
CG12139-RB	GGGACTGGGGACGCCAATAAGCAAACATATCCAAAAATTGATAAACATATGCAACCCCCCACAGGAGAA	69	-	chrX	9253889	9253958	9253889..9253958	CG42611-RA,	FBgn0261260,	Megalin,	1	.
CR32658-RA	TCTAGCGCCAACTGACCTAGTGAATCCCGTTCACCATTCCCGGATGTTAATTGATTGCTTAGTCTAGGA	69	+	chrX	11985607	11985676	11985607..11985676	CR32658-RA,CR32658-RB,	FBgn0040859,	CR32658,	1	.
CG9483-RA	CCGTCTGCATGGTGATGTACACGGCTACCATAATCCATGATCGCCAGTTCGATGTGCCCAAGAACGAGT	69	+	chr2L	8867428	8867497	8867428..8867497	CG9483-RA,	FBgn0032072,	CG9483,	1	.
CG3964-RA	GCAGAGGAGGTCCGCAAACATAACCAGTACACCAATCGGAGCATCGAATTCCGGGAGGAGTACGTTGAT	69	+	chr2L	3866647	3866716	3866647..3866716	CG3964-RB,CG3964-RA,	FBgn0031574,	CG3964,	1	.
CG13096-RA	AAGCGCAAGTTCCTCAACAGCTACGACTACCTGTTGTGCGACGGTCGTTTGTCAGGACAGGCTAC	65	-	chr2L	8510542	8510607	8510542..8510607	CG13096-RA,	FBgn0032050,	CG13096,	1	.
CG9379-RA	GCTCACGGACAATACGCGCAAGAAGTTCTTCCGGAAGCACTACAAGGCGGATGTTATCTCGCACTGTG	68	-	chr3R	5356752	5356820	5356752..5356820	CG9379-RA,CG9379-RD,CG9379-RC,	FBgn0000244,	by,	1	.
CG13790-RA	CAGGTCGTCAACACGGAAAATGTCTGCGAGAATGCCCAGGAGCTATCACCAAAGCGCAAATTGGC	65	-	chr2L	7568729	7568794	7568729..7568794	CG34374-RD,	FBgn0085403,	Rapgap1,	1	.
CG5323-RA	CTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATGATGAAGACCATGAAGG	65	+	chr2R	14503157	14503222	14503157..14503222	CG5323-RA,	FBgn0034362,	CG5323,	1	.
CG4955-RA	AGGGATTCGGACAGTACGCGGATATCGGAGGAAATGGTGGAAGTGTTCCAAACCTCTTCGGCGAG	65	+	chrX	16976012	16976077	16976012..16976077	CG4955-RA,	FBgn0030814,	CG4955,	1	.
CG7411-RA	GGCCCTCATCCGAAATGAAACGGCGGACTGTACCCAAGTTTATTCCACTGGCAACTTCACATGCCTG	67	+	chr3R	15488092	15488159	15488092..15488159	CG7411-RA,	FBgn0003011,	ort,	1	.
CG6533-RA	GACTGGAATTCCCTCAACCGTTATGGATGGGAGCAGGGTCGCCCACTTTTGGCCAAGCCCTACGG	65	+	chr3L	8725291	8725356	8725291..8725356	CG6533-RA,	FBgn0000356,	Cp16,	1	.
CG13758-RA	GCAGGCCAGCGATATAGAACAGACTCGCAAGGCAGTTAGAGCGGCTATAGTCCTACTACCACTTTTGGG	69	+	chrX	2469646	2469715	2469646..2469715	CG13758-RA,CG13758-RB,	FBgn0260753,	Pdfr,	1	.
CG30217-RA	TGCTTTGACGTTCGTCTATTCCTGTCTGCAAAGTCGCCTGAAATCGAAGCGTGTCTTCTGCAGCCGATG	69	-	chr2R	18543174	18543243	18543174..18543243	CG43325-RA,CG30217-RB,CG43326-RB,	FBgn0263030,FBgn0263031,	CG43325,CG43326,	2	.
CG5575-RA	CCTACTTACACCCCCCTTGCTCTAGAAGCCCAATCCAATACTTTTTAAGCGGCTGGTCCATTCAGTGGA	69	+	chr2R	19764668	19764737	19764668..19764737	CG5575-RA,	FBgn0011236,	ken,	1	.
CG7083-RA	TTGGAGCCACACATCCTGGGGTTTACGATGCAGCCAAACAATTGTTTGCTCTACACTTTCGCGGG	65	+	chr3L	8334586	8334651	8334586..8334651	CG7083-RA,	FBgn0035877,	CG7083,	1	.
CG12832-RA	CTGGCCCTGGTTTTCAGTCAGATCACCGTCATCTTGGCCCAACCCATCAACTATGAGCTGCTGGC	65	-	chr2R	2950542	2950607	2950542..2950607	CG12832-RA,	FBgn0033138,	Tsp42Eq,	1	.
CG32025-RA	TCTGTGTTCTCACCTTTTGAACCCACAATGAGTCGCCTACCAAAAATAGCAAATGGCATTGATGCGTGA	69	+	chr3L	8757738	8757807	8757738..8757807				0	no match
CG40130-RA	GGTGACGGCGTTCAGAACACAATCAACACTGAACCATGTGGAACCGTCCATAAGATACAGGTCACTGGT	69	+	chr2R	294006	294075	294006..294075				0	no match
CG32714-RA	ACCAAACGATTCTCCGGATTCTTTCAATTCTTGTTCCGATTTGTATTCTTCATTCATTCCTTAAACAAA	69	+	chrX	8403694	8403763	8403694..8403763	CG32714-RC,CG32714-RF,CG32714-RG,	FBgn0053181,	CG33181,	1	.
CG5434-RA	CGCTAGCTCCCTGGAGGAACTACTTAAGCTGAACCCCAACGACACCAAGGTCTTGGCCCAGTTGG	65	+	chr3R	16416048	16416113	16416048..16416113	CG5434-RA,	FBgn0038810,	Srp72,	1	.
CG11317-RA	CGGCGCCAAGTGAAAGGGATGAACTTGGGAGGACATCCAACTTGGAATTGGGCGCTCATCTTTTGATGA	69	-	chr3R	26916886	26916955	26916886..26916955	CG11317-RA,	FBgn0039816,	CG11317,	1	.
CG8094-RA	GCGGAGGTGCGAGAACTTATGCAACCCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGC	69	-	chr2R	11107691	11107760	11107691..11107760	CG8094-RA,	FBgn0001187,	Hex-C,	1	.
CG7414-RA	AGAAGCTGGCTAACCTCAAGTGTGCTGATACCACGGTTTTTGAGTGGCATCCCAATGGCGAGTGG	65	+	chr3L	21819405	21819470	21819405..21819470	CG7414-RA,CG7414-RC,CG7414-RD,CG7414-RE,	FBgn0037135,	CG7414,	1	.
CG13865-RA	AGTCGACTTGCGACGACTATGGTTACGCAAAGTCCTGCTACAAATACGGCAACTACAGTTTCCTTGGAA	69	+	chrX	22415723	22415792	22415723..22415792	CG13865-RB,CG13865-RA,	FBgn0039965,	CG13865,	1	.
CG32814-RA	TGCAATCAGGGGATGCGACAAAACTCCGTTCGACGAACATCACGAAAGATCCGAAACCACCGACTACAT	69	-	chrX	915280	915349	915280..915349	CG32814-RA,	FBgn0052814,	CG32814,	1	.
CG12678-RA	GAAGGTACGGGCCCAACGCCTCGATTCGCCACGGAGAAAGAAAGATTGTCCAGCCAAAACGGTAG	65	-	chrX	20697010	20697075	20697010..20697075				0	no match
CG1864-RC	TCCCATCTCACTTGAACCCACCCAATCAACAAATACAAATCCTAGGGAAGTTGAGAGGTTCAGCAACCA	69	-	chr2L	20684774	20684843	20684774..20684843	CG1864-RB,CG1864-RC,CG1864-RD,	FBgn0014859,	Hr38,	1	.
CG12716-RA	CAACAAGAAAAAGCGACCAACACTCAACGCCTCAATTTCAAAGTTTGCTACCATTCCGAAGAAAG	65	-	chrX	12869392	12869457	12869392..12869457	CG12716-RA,	FBgn0030439,	CG12716,	1	.
CG14105-RA	GGGCTTCCGTGCTTAATAATCGGGCACAAACTTTACGCCTAGCCAAACGTGATGAGGAGGCCCTC	65	-	chr3L	13419356	13419483	13419356..13419364,13419426..13419483	CG14105-RA,	FBgn0036359,	CG14105,	1	.
CG13698-RB	TGCTGGGCATCTTCTGCATTCTGTCGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGGTTA	69	-	chr3L	18083162	18083231	18083162..18083231	CG13698-RB,	FBgn0036773,	CG13698,	1	.
CG8503-RA	ACAAGTGCGTCAACTATCTGAAATACGAGTCGGACATCTTCATCGAGGGTCACGTGCTTAAGCAGGCCA	69	+	chr2R	10133392	10133461	10133392..10133461	CG8503-RA,	FBgn0033917,	CG8503,	1	.
CG6842-RA	CTTGTCCCGCACGAAACCGACCGTCAACGAAGACGATCTGAAGAAGCTGCGCAAATTCACAGAGG	65	+	chrX	17804127	17804192	17804127..17804192	CG6842-RA,	FBgn0027605,	Vps4,	1	.
CG10068-RA	TGACCGCTTTTGGATGGAGAGCGACCCACGAAACATTATGGACTTCCGCGAGATTTACCAGTCATTTGA	69	-	chr3R	2952566	2952635	2952566..2952635	CG10068-RA,	FBgn0037473,	CG10068,	1	.
CG10117-RA	CAGTAATTGCCACTGAAAAGGAATACGAACTCTTTTCGGGCCATTCAGAAATAAATGCACAAATCCGCC	69	+	chr2R	10472451	10472520	10472451..10472520	CG10117-RA,	FBgn0020245,	ttv,	1	.
CG11154-RA	CCCGTGTTGCTCTAACTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTGTTGC	69	+	chr4	1054290	1054359	1054290..1054359	CG11154-RA,	FBgn0010217,	ATPsyn-beta,	1	.
CG31872-RA	GCTTGGCACATATGTGAAATTGCCTTTTCCTAAGGGCTCGGAAATAAATATAATTTTTATTAAGGGAAA	69	+	chr2L	10643421	10643490	10643421..10643490	CG31872-RA,	FBgn0051872,	CG31872,	1	.
CG9358-RA	CCGACGCCCTTCATTCCGACTGCTCAAAGTGCACGGAAGTCCAACGCAAAAACTCACAAAAGGTAATCA	69	-	chr2R	20858556	20858625	20858556..20858625	CG9358-RA,	FBgn0035089,	Phk-3,	1	.
CG12489-RA	GCGTGCCGATTGTCTGAGAACCAACATGATTCACTAGTGCTCTATGACCACAACCTAAAAGGGGAACAA	69	-	chr2R	18451512	18451581	18451512..18451581	CG12489-RA,	FBgn0260866,	dnr1,	1	.
CG5404-RA	GCGCATTAGTGGCATGGATTATACGGCTGCACAGGGTATATCGAAGTTATCCAGTGATCTGTGCCG	66	+	chr3R	11533073	11533139	11533073..11533139	CG5404-RA,	FBgn0038354,	CG5404,	1	.
CG5992-RA	TCCCTCCTTCTGGAAAGCCACTCCCCTGACGCATGACTTCTATATCGCCTTCTTAGGAATCGCCTCG	67	-	chr3L	17745732	17745799	17745732..17745799	CG5992-RA,CG5992-RB,	FBgn0036752,	Adgf-A,	1	.
CG6679-RA	GCCGTCATGATCGTCCAGATTTTCTTGCCCTGTTACTACGGCAATGAGTTGACCTTTCATGCCAATGCA	69	+	chr3R	18815898	18815967	18815898..18815967	CG6679-RA,	FBgn0039034,	Or94b,	1	.
CG6667-RC	AATTGCAGAATGACCACCAGGATGGCAGTAAGTTGACTGTTGAGATTTTTCCCAAACTGGTGTCGGTCT	69	-	chr2L	17439147	17439216	17439147..17439216	CG6667-RC,	FBgn0260632,	dl,	1	.
CG18228-RA	ACGGCCAGATTCAAACAGGCCTGGTATACCTTATCTCTGGGTTTGAGGTGGAGAAGGCGATAAGTTCCT	69	-	chr3R	4087022	4087091	4087022..4087091	CG18228-RB,	FBgn0037560,	CR18228,	1	.
CG16741-RA	TGCGGTTACCGAAATTAACGCAAATGGGTATGAAACGCTTTGTATCCTCTTTGATTCGCAAGTCCCCGA	69	+	chr2R	16234612	16234681	16234612..16234681	CG16741-RA,	FBgn0042198,	CG16741,	1	.
CG12746-RD	AGCACCAGGCCTAAGCTGACAACCGAATATACCCAACGGACTAACGAAATGACTGCGAGCAAGGAAGGT	69	+	chr3R	1391815	1391884	1391815..1391884	CG12746-RB,CG12746-RD,CG12746-RE,	FBgn0037341,	CG12746,	1	.
CG32588-RA	GGCAATGGCTGCTCAAGTATTTGATCTTTCATTAGCGTACGGATTTCATTGTAATGTTTTGTTCGCCTT	69	-	chrX	15099888	15099957	15099888..15099957	CG32588-RA,	FBgn0052588,	CG32588,	1	.
CG5204-RA	ATAGTGCTCATTCGACCTCGGCACTGGATTTACGAAAGCCCAGGGATGACCAGACGGAGGACTTG	65	+	chr2L	13162849	13162914	13162849..13162914	CG5204-RA,	FBgn0032473,	CG5204,	1	.
CG9992-RC	GGCCGAAAGTCCCATTCCAAGGGTCGTTTTAATGCCACCAACAAGCATATCTCGTACTCGGGTCCACAG	69	-	chrX	16277415	16277484	16277415..16277484	CG9992-RA,CG9992-RD,CG9992-RE,CG9992-RC,	FBgn0030744,	CG9992,	1	.
CG12389-RA	AGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTCTTCCACGAAATCACATACATCACTACCTGCGGA	69	-	chr2R	7193797	7193866	7193797..7193866	CG12389-RA,	FBgn0025373,	Fpps,	1	.
CG4475-RA	TCAGTTCTCCGAGGTTACCTCCCTCAAGAGGAAGTATCCCCACCTGAAAGTTTTGTTGAGTGTGGGCGG	69	+	chr2L	16449321	16449390	16449321..16449390	CG4475-RA,CG4475-RC,CG4475-RB,	FBgn0020415,	Idgf2,	1	.
CG8160-RA	TATTGAACTTCCGCAATAATTATCAATCTTCGATTTCCCGAACTAATCTCAGTACCAGTCGATTAAAGC	69	-	chr2R	11214820	11214889	11214820..11214889	CG8160-RA,	FBgn0034011,	CG8160,	1	.
CR31400-RB	GCAACTTAAAAGGTGTGATTTTTGAGACATGCTAATTTAATATCCGTCGAAAAGGAATATGCTCTTGGT	69	+	chr3R	17135761	17135830	17135761..17135830	CR31400-RB,	FBgn0001234,	Hsromega,	1	.
CG8864-RA	GGCCACAGTCTTGGCTCACATACTGCTCAATCTGGGTCGTAATAAGGAGGCACAGAATCTTCTGCGAGA	69	+	chr2L	13978589	13978658	13978589..13978658	CG8864-RA,	FBgn0028940,	Cyp28a5,	1	.
CG5461-RC	CTCACCCAAACATGTTAAGTTCGTGTTAGGTAGACTAGCCTGCTGTTAAGAATTGTTATGTTGTTGCTG	69	-	chr2L	12457465	12457534	12457465..12457534	CG5461-RD,CG5461-RB,CG5461-RC,CG42281-RJ,CG42281-RK,CG42281-RL,CG42281-RM,CG42281-RN,	FBgn0259176,	bun,	1	.
CG12551-RA	GTCCGCACCTACAGCCCGCATTCGTCTATGAGTCACCCCTTCCGGAAGAGGAAGAAGGTTCCAAG	65	+	chr2R	1808594	1808659	1808594..1808659	CG43366-RB,	FBgn0263109,	CG43366,	1	.
CG30496-RA	GCCTCGAGAGGCGTCTACGAGATGAGTTGCCAGAATGTTTTCCTCATCGAGGAGAAACTTCCGCTGCAT	69	+	chr2R	3588001	3588070	3588001..3588070	CG30496-RA,	FBgn0050496,	CG30496,	1	.
CG5116-RA	GCCTCATGATGCACGTGGTTATCAGCCAACGCACACTGGATCAGTTCAAGCGACAGTTTTGCCGATGAA	69	+	chr3R	21310967	21311036	21310967..21311036	CG5116-RA,	FBgn0039339,	CG5116,	1	.
CG8440-RE	TCGACGGCTAATACCATGTGTACCATGTGGCGCAGAAATGTTTTTCCATCCACAAATGTACCCGAGCAC	69	+	chr2R	12071615	12071684	12071615..12071684	CG8440-RA,CG8440-RC,CG8440-RD,CG8440-RE,CG8440-RB,CG8440-RF,	FBgn0015754,	Lis-1,	1	.
CG14472-RA	TGGCAGGGATGAATGGGAGCGTGCTAGTTTGCAAAATGCCAACACCAGATGTAATGGACTGCTGC	65	-	chr2L	8055397	8055462	8055397..8055462	CG14472-RA,	FBgn0011230,	poe,	1	.
CG1379-RA	GCTCCCATCACTTCCTTCTGGTGGTCCCATCTCGAGGAGATTGATGACCTAATCGGATGCGGAAACCTG	69	-	chrX	20476260	20476440	20476260..20476299,20476410..20476440				0	no match
CG5104-RB	TGTGCAAAACCCCCCGAGAGGAGTGCCGGTAATTCCAAGTCAGCCACCTGTTGAACATTATTCAATCGC	69	+	chr3L	20514180	20514249	20514180..20514249	CG5104-RB,	FBgn0037009,	CG5104,	1	.
CG18281-RA	AGGTTTTATTAAAAAGGAGACTGTCGAAAAGGCACCATTGATCTATAAGATCATAGACGACGCTAGCGA	69	+	chr3L	20494413	20494482	20494413..20494482	CG18281-RA,	FBgn0037003,	CG18281,	1	.
CG32762-RA	TGCCAGCAATCAAGCAAAATGCACAGCCAACAACTGACTTTGATTTTCGGCATGACCCTCCTGTGGTCA	69	-	chrX	5395074	5395214	5395074..5395094,5395165..5395214	CG32762-RA,	FBgn0052762,	CG32762,	1	.
CG7686-RA	CCAGCGTAATTCGGCGCAATGAGCAGCTGTCCCTATTGGACGATCGCTTCGAGAAGTTTTACGCCAC	67	-	chr2R	6725313	6725380	6725313..6725380	CG7686-RA,	FBgn0027525,	CG7686,	1	.
CG18854-RA	GGAACAATGCTGCAAAATAAGAATAATAGTAGCAGTTAGTAAATTGACTAATAAAATGTTTGTTTTCAA	69	-	chr2L	9787291	9787360	9787291..9787360	CG18854-RC,CR18854-RD,	FBgn0042174,	CR18854,	1	.
CG18783-RA	TCTGCTCGCCAAACTTCTTCCTTCCCCTCCACGATTAGTGTCAACGGCATCTTTGACATCATGTACCCA	69	+	chr2L	6096145	6096214	6096145..6096214	CG18783-RA,CG18783-RB,CG18783-RC,	FBgn0028420,	Kr-h1,	1	.
CG12047-RB	GCAACAATTTGAGCACGAAAACTGTGTCACCTGGGCAATGCATGGTGGCGAAAGTGTGATGATGGAGGA	69	+	chrX	14151698	14151767	14151698..14151767	CG12047-RF,CG12047-RH,CG12047-RI,	FBgn0002873,	mud,	1	.
CG32720-RA	AGTAAGCCACGCAATTTTTCACCCACATGGACCAATACTAGCTTGGTGTCCTGGATAGATGGGCGTCGT	69	-	chrX	7430322	7430391	7430322..7430391	CG32720-RB,	FBgn0052720,	CG32720,	1	.
CG8153-RB	GCCTGGGAAGAGGATCAACAGGTACAAGTTCTCAAGGAGCAGGAGAAGTACGAAACCCGCGTGTACGG	68	+	chr2R	11205081	11205149	11205081..11205149	CG8153-RC,CG8153-RA,	FBgn0004698,	mus210,	1	.
CG3935-RA	CCCTCCTGGATTATGGGCATATCGGAGGAAATCAAGCTGGAGGAACTACCGCAAGAAGCCAAGCTAGCG	69	+	chr2L	384538	384607	384538..384607	CG3935-RA,	FBgn0000061,	al,	1	.
CG12730-RA	CGGCGCTTCGCTACATTTGCTACATTGGCTTTAATCGCTCGTTTCTGAGGCATCTATTCGGCTGGACAA	69	+	chrX	5411338	5411407	5411338..5411407	CG12730-RA,	FBgn0029771,	CG12730,	1	.
CG16885-RA	ATCGGAACCAGGAGAAAATCACACAACTGACGCAATCCATTATAGAAAGCTTGCCAAAACCCATCCGGG	69	-	chr2L	13932730	13932799	13932730..13932799	CG16885-RA,	FBgn0032538,	CG16885,	1	.
CG16812-RA	GCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGGAGAAGATTTTGATATGGGAGCCG	69	+	chr2L	13223743	13223812	13223743..13223812	CG16812-RA,	FBgn0032488,	CG16812,	1	.
CG32806-RB	TCCAGTGGAATGCATGCTATTGGATTGGCTTGGCACACTTGCTAATGATAATTTCTTGCATGCGCGGAC	69	+	chrX	1684289	1684358	1684289..1684358	CG32806-RA,CG32806-RB,	FBgn0052806,	CG32806,	1	.
CG10589-RA	CCTACCCTAATGGTGCGAGTAAACAACCTTGATCTGAGTGTCCTCTCCCAACGTCTTGCTCGTCCTGCC	69	+	chr3L	20922049	20922118	20922049..20922118	CG10589-RA,	FBgn0037035,	CG10589,	1	.
CG9492-RA	GCATACTCCTGCCAATGAACATTTTCCTCAGGCAAAGGGTCATTAAACGCGTCCACACCTGCCTCTGC	68	-	chr3R	5479444	5479595	5479444..5479477,5479560..5479595	CG9492-RA,	FBgn0037726,	CG9492,	1	.
CG14407-RA	CCGTCAAGATGAACCGAATTTGCCAGAGTCTCCGCCATCCGAGATACCAGATTCTCGCCACCACA	65	-	chrX	14732078	14732143	14732078..14732143	CG14407-RA,	FBgn0030584,	CG14407,	1	.
CG9496-RA	GCGACATCGATCGAAGCCATATTTATACAGTATAGCATTCCTTAAAAGATCCCCTTGTATATGTAACTT	69	+	chr2L	8939604	8939673	8939604..8939673	CG9496-RB,CG9496-RA,CG9496-RC,	FBgn0032075,	Tsp29Fb,	1	.
CG16863-RA	CGGGGAGCAAGCTGTTGCAAAGCATCCGGAGAACCGTGATCACTACGATATCTGGGCGGCATTCAAATC	69	+	chr2L	13792744	13792813	13792744..13792813	CG16863-RB,CG16863-RA,	FBgn0028931,	CG16863,	1	.
CG6586-RA	GAGGCCGTCAACATCCCCAAGACATCCATGACCATGGAAGACATACAGCTGCCGACAATGAGCAG	65	+	chr3L	6049555	6049620	6049555..6049620	CG6586-RA,	FBgn0028980,	tan,	1	.
CG4363-RA	ACCTGGCGACATAAGGAACTGCAATGCTGCCAACATCGTCGAGAGCTCAAATTTAGGGAACCGCTTCAT	69	-	chr2R	17721819	17721888	17721819..17721888	CG4363-RA,	FBgn0034663,	CG4363,	1	.
CG31990-RA	CCTCCACTTCAAGCTCCAAAATAAGGAATATCGAACTTTAGAATTGCCACTGTCCATGTTTCAACAAGT	69	-	chr2L	10404451	10404520	10404451..10404520	CG17768-RA,CG33677-RB,	FBgn0032240,FBgn0067622,	CG17768,LSm-4,	2	.
CG3284-RA	CCGCATGACTTTGAATCACTTGCAAGAACTTCGATTTGGTTTGTATAAATGTTTAAATAGCTCAGTCTT	69	+	chr3R	10135469	10135538	10135469..10135538	CG3284-RA,	FBgn0004855,	RpII15,	1	.
CG6584-RE	GCCAAGCGTTCAAAAGCAGAAAAGCGCACGAAAATAGAACGGAAAATGTGGGAAATGTGGTAGACGGAA	69	-	chr3R	6693927	6693996	6693927..6693996	CG6584-RC,CG6584-RE,CG6584-RJ,	FBgn0037847,	SelR,	1	.
CG12002-RE	CGGTGTCTTCTCACCCGAACAACTGACCCAAATCAAGCAAGCCAACTTTGGTCGAGTGCTTTGCGATGT	69	-	chr3L	2602278	2602347	2602278..2602347	CG12002-RA,CG12002-RC,CG12002-RD,CG12002-RE,	FBgn0011828,	Pxn,	1	.
CG13686-RA	CTTGCAGAAGGCAATAAATTCCCTGCAATGCTCGCTCAAAAACACAAAGGTCATGTCAACTGGGAAACC	69	-	chr2L	620799	620868	620799..620868	CG13686-RB,	FBgn0040106,	lectin-21Cb,	1	.
CG6875-RA	CACGACTATATGACCAACCCAGAGGCCATTTACATGGTGCGCGAAACTAAGAAGCTCGTGGCCCG	65	+	chr3R	20585684	20585749	20585684..20585749	CG6875-RA,	FBgn0000140,	asp,	1	.
CG32644-RB	ACCCTGTGGTCCCCGAGTCTGTGGCAAAAGTGGACATTGTTATCGCAGCTTTGAGAGCATTTGTGACTT	69	+	chrX	12862057	12862126	12862057..12862126	CG32644-RD,	FBgn0052644,	Mur11Da,	1	.
CG5589-RA	GGTTATGAAAAGGACTTAAATTCAAAGCAGAAGAAGCTAGGCAATATTAAAACAGAACTTAAGCCAGCC	69	-	chr3L	17795922	17795991	17795922..17795991	CG5589-RA,	FBgn0036754,	CG5589,	1	.
CG14189-RA	TCTGCGCCTGATTCGCCGAAACAGGACACCCAGACAACAAGGATGAGTAGCACTGACACCGAAAC	65	-	chrX	18944514	18944579	18944514..18944579	,CG34329-RA	,FBgn0085358	,CG34329	1	.
CG9447-RA	GTTATGAGCGGCTTCCTTCTCTACGTGAAATTCACCAAACGCCAACAGATTCAACCCAAGACTGGCACG	69	-	chr2R	2762023	2762092	2762023..2762092	CG9447-RB,	FBgn0033110,	CG9447,	1	.
CG8839-RC	AGCACACATTCATTGGCCTGTCGACAGCTATCATGGATAGTGCACAGTGCAAGCACGGATCTCCCAAG	68	-	chr2R	8227730	8227798	8227730..8227798	CG8839-RD,CG8839-RC,CG8839-RA,CG8839-RE,	FBgn0033717,	CG8839,	1	.
CG13211-RB	AAACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGGTTATTGAGCAGCTGAAAAAGTCCGTGG	65	-	chr2R	7182614	7182679	7182614..7182679	CG42336-RC,	FBgn0259238,	CG42336,	1	.
CG8107-RA	GCAACTGGAGGGATGACTAAGAGCAAGCATCAATAGCAAATCCACTCCATGCACCTCGTCAAGAGCCGG	69	+	chr3L	9885766	9885835	9885766..9885835	CG8107-RA,CG8107-RB,	FBgn0025866,	CalpB,	1	.
CG30121-RA	ACCCTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATGTCTGTGGCCTCTGACA	69	-	chr2R	14627980	14628049	14627980..14628049	CG30121-RA,	FBgn0050121,	CG30121,	1	.
CG10144-RA	AGACTCAGTTTGAAGAATGTCCACGGTGCTTTACGGCCATTCCAGATCAAAGTATTGGTTTGCCGCGGC	69	-	chr3L	6484500	6484569	6484500..6484569	CG10144-RA,	FBgn0035704,	CG10144,	1	.
CG3893-RA	GACGAGAGTGTGCCCGATTACGATCCTCAGGTCTACTGTTCCAGGGCCAACATAGTGAGAGAGCCC	66	-	chr3L	18894165	18894231	18894165..18894231	CG3893-RA,	FBgn0036826,	CG3893,	1	.
CG32036-RB	TTTGTAACCGACATAATGATGCCAAAGCTGGGCTGTTTCTCATTTTGGCTAATGTTCGTTGTCGGAGCC	69	-	chr3L	9482180	9482249	9482180..9482249				0	no match
CG6822-RB	GGCAGGGTCAGAGCCAAATTGCCGATCACCTACGCGAACTTTCCCGCAAAGTGGATGAGATTATTGG	67	+	chr3L	8529334	8529401	8529334..8529401	CG6822-RA,CG6822-RB,	FBgn0035909,	ergic53,	1	.
CG11324-RA	GCCAATGCCAAGAAATGGGAAATCGAGCTGGCTACCTTGAAGAACAACAATATACGGCTGACTAGTGCT	69	-	chr2L	6721523	6721592	6721523..6721592	CG11324-RA,CG11324-RB,CG11324-RC,	FBgn0025777,	homer,	1	.
CG10673-RA	TGCCAAGCAGTTCATCCAGGAAACAGTGTCCACTCAGACGGAGGATGAAGCCAAGAAATGTCTGCTGGA	69	-	chr3L	5132122	5132191	5132122..5132191	CG10673-RA,	FBgn0035590,	CG10673,	1	.
CG5151-RB	AAAAACCAAGAAAGCAACAAACTTGAAAGAGACAGACACAATACCATAAAAACTGAAGAAAGGGAATGA	69	-	chr3L	16132883	16132952	16132883..16132952	CG5151-RC,CG5151-RD,CG5151-RE,	FBgn0036576,	CG5151,	1	.
CG10106-RA	CGGCATCTTGGGCATTGTTTATGGCGTGCTGATTCTGAAGAGCATCGGTGTAGTTGAAGTTAATGGACA	69	+	chr2R	2904522	2904591	2904522..2904591	CG10106-RA,	FBgn0029506,	Tsp42Ee,	1	.
CG30159-RA	CGCACTCCAGTGAGGCAAATGTCAAAGTCTGGTCAGTAGCAAAACAGAATTGCAGCCAAGAAAAGCGGA	69	+	chr2R	2880416	2880485	2880416..2880485	CG30159-RA,CG30159-RC,	FBgn0050159,	CG30159,	1	.
CG9306-RA	ACCTGGGACACCACTAATCTTAGAGTACCGTAATCAAATCACATCCAATCTTTGTCTTTAAAAGTAAAT	69	-	chr2L	13370315	13370384	13370315..13370384	CG9306-RA,	FBgn0032511,	CG9306,	1	.
CG8884-RA	TTCTTTCCATTCCTTTCCAACCTTGTTTCCTCCTTAATTGATTAACCTAATATTGTTAACCCAAAACCC	69	+	chr3R	11785339	11785408	11785339..11785408	CG8884-RA,CG8884-RB,CG8884-RC,CG8884-RD,CG8884-RE,CG8884-RF,CG8884-RG,CG8884-RI,	FBgn0013334,	Sap47,	1	.
CG10076-RD	GCAAAGCCCTAGAAAAATCGAGTGAACGAAAAGTTACCAATTATCGCACTAAGATCAAAAAAATCAAAT	69	+	chr2L	20344730	20344799	20344730..20344799	CG10076-RD,CG10076-RG,	FBgn0003475,	spir,	1	.
CG12664-RB	AGCCGAAGCGAAAAGAGAGGTAGAGAGTAGGATTTACAGCTTCTTCGCTTCACTAAATGCAGTCGACGC	69	-	chrX	9028559	9028628	9028559..9028628	CG12664-RB,	FBgn0030090,	fend,	1	.
CG30110-RA	AGAGCGATCCCGATGTACCATTCATGATTGAGATGAAGAGGCGTCAGGATCGTGAGCAGTTGAAGCAGT	69	-	chr2R	13768050	13768119	13768050..13768119	CG30110-RA,	FBgn0050110,	CG30110,	1	.
CG7254-RA	ACGATCCCATTGTGGGCGATAAGCTCAAGGTTATCTTCCTGGAGAACTACCGTGTCACCCTGGCC	65	+	chr2L	2136162	2136227	2136162..2136227	CG7254-RA,CG7254-RB,	FBgn0004507,	GlyP,	1	.
CG5480-RA	AGCGCCTAGTGCCACGTACCTGCCTGTGAACAAGGTCAAGTAGGAAACCTGCAAGACCACATTCTTATT	69	+	chr3R	22483120	22483189	22483120..22483189	CG5480-RA,	FBgn0243586,	Tb,	1	.
CG11217-RA	AGCCAGTCAGTCAGTACAGCGATCGAAGGCTTAGGGAGAAATCGCGAATGCAATGTTGTTATCCTAAGT	69	+	chr2R	3675456	3675525	3675456..3675525	CG11217-RA,	FBgn0015614,	CanB2,	1	.
CG8545-RA	GCCCGAGGAGAACGAATGGGTCATCGACTATGCACTGAAGAAGCGAAATGTCAAACTTGTGCCCACTGG	69	+	chr2R	8358092	8358161	8358092..8358161	CG8545-RA,	FBgn0033741,	CG8545,	1	.
CG8492-RA	CCCAAAACCCATTCCTCAGTTTACTTGGCAAACCAATTGTACCTGCTCAAGCACCCATCAAGCCCCAGT	69	-	chr3L	7722416	7722485	7722416..7722485	CG8492-RD,	FBgn0035813,	CG8492,	1	.
CG9998-RA	TTAAGGAACTGCTTTTGTCGTTTGGCAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGGGT	69	-	chrX	16251380	16251449	16251380..16251449	CG9998-RA,CG9998-RB,CG9998-RC,CG9998-RD,	FBgn0005411,	U2af50,	1	.
CG13996-RA	CCGAGTACGAGCAAACTTTTCGGGAGAACTACATTGATGGACACAAGCTGCTGAATCTGGACGCA	65	+	chr2L	6021153	6021270	6021153..6021164,6021216..6021270	CG13996-RA,	FBgn0031763,	CG13996,	1	.
CG3978-RA	ACCCTCACTTGAAGCCTTCCTTGGAATCATGGCATTGAAAAGACTTTAGACATTAGTACTACTCGGCCT	69	+	chr3R	11866091	11866160	11866091..11866160	CG3978-RB,CG3978-RA,	FBgn0003117,	pnr,	1	.
CG16793-RA	AGGGATCTTGCTCTACCTAGCACTGGTCTTCCTCCTGGCGATTATCTTGATGAACGTCTTCGCCTCCGT	69	-	chr3L	17335726	17335795	17335726..17335795	CG16793-RA,	FBgn0036712,	CG16793,	1	.
CG7142-RA	GACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATCGCGCTAATTTACACCAAGGAGCCC	65	-	chr3R	14104449	14104514	14104449..14104514	CG7142-RA,	FBgn0038595,	CG7142,	1	.
CG3052-RA	GGGGAAAACATTGCGAATATTCCACATCCGATAAACGCATTTCACCATGCTCTGTAATCCGCACATCGC	69	-	chrX	4539725	4539794	4539725..4539794	CG3052-RA,	FBgn0011277,	HLH4C,	1	.
CG12052-RI	CCGCAAGGTCTAGGCGAAAGTTGGGAGGATTGTGAGTACACAACTGTTGGGTGTAAAGAAGTAACCATT	69	-	chr2R	6395795	6395864	6395795..6395864	CG12052-RI,	FBgn0005630,	lola,	1	.
CG13693-RA	AACGTTACTGGTCTCATGATGAGCACGTCAGGACACAGCCTTAAAACCGACACGCAGAGCAGACG	65	+	chr2L	232556	232621	232556..232621	CG13693-RA,	FBgn0031235,	CG13693,	1	.
CG18173-RA	GGACTGTTCCTGCTGTCCATTTACGTCAACCGTTGGATGGTGGCGAAAAGTCTGCTCACCTACTCCGAG	69	-	chr3L	1736710	1736779	1736710..1736779	CG18173-RA,	FBgn0035265,	CG18173,	1	.
CG12951-RA	AGTGTGCAGGACACCCTACAGGAGGTTTCCCTGAAGATTTACTCGGATGAAGAGTGCACCAGCCG	65	-	chr3R	5155226	5155291	5155226..5155291	CG12951-RA,	FBgn0037677,	CG12951,	1	.
CG14257-RA	AGGAGATCCTCAGCTTGTTGCCCAACGGGAAAACTGAGTACACGGCCTCCAAGACAGTGGCTTTG	65	+	chr3R	22907244	22907309	22907244..22907309	CG14257-RB,	FBgn0039479,	CG14257,	1	.
CG12129-RA	GCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTCCGCGTCCGAACGATAGGTCAAACGAAGT	69	+	chr2R	5921303	5921372	5921303..5921372	CG12129-RA,	FBgn0033475,	CG12129,	1	.
CG13128-RA	TTGAGCACGTTACTTGGACGACCAGCAAGAAGGGATATTTCCATCACGTCGTTTTTCCGCTGCAG	65	+	chr2L	10104822	10104887	10104822..10104887	CG34109-RC,	FBgn0083945,	CG34109,	1	.
CG12559-RD	TCATTCCGCAAACGTCTTGCATCGGGACCTTAAGCCAAGTAATTTACTGTTGAACAAGACGTGCGACTT	69	+	chr2RHet	232622	232691	232622..232691	CG12559-RB,CG12559-RF,CG12559-RE,CG12559-RD,CG12559-RC,	FBgn0003256,	rl,	1	.
CR18748-RA	TGAAGGGCATGCATATCAATGGAACTCTGATAATGCCGGTGACTATTTGTGGTGTTCCGATATCGCCG	68	-	chr3R	3612455	3612523	3612455..3612523	CG18748-RB,CG18748-RC,	FBgn0042105,	CG18748,	1	.
CG14282-RA	ATCAATAGCCTGGAAGAGGTGACAGCGCACTTCACCCAGCGTAGTGAGGAGATTCGAAAGAGGCG	65	+	chr3R	15003016	15003081	15003016..15003081	CG14282-RA,	FBgn0038685,	CG14282,	1	.
CG8552-RA	GCCGATGTGAGTCCACAAAACCACACGAGAGCTCTGTTGGATCCAACGATCCCACGTACCGTATACACC	69	-	chr2L	8134563	8134632	8134563..8134632	CG8552-RA,CG8552-RB,CG8552-RC,	FBgn0031990,	CG8552,	1	.
CG4535-RA	CGGCTGCCAACCAAGTGATCATCTGCAAGCAGAAACTCAAAGAGAGCAAGAACAAGGAGAAGAAACTCT	69	+	chr2L	9889659	9889728	9889659..9889728	CG4535-RA,	FBgn0029174,	FKBP59,	1	.
CG5829-RA	CAACGGATTCACCAGCTTCTCCATCTCCAGCATCCTGAGTCGCAGTGAGCCGGCCAAGAAGAACG	65	+	chr3R	13385768	13385833	13385768..13385833	CG34419-RC,	FBgn0085448,	Hmx,	1	.
CG6634-RA	AGATCGTTTCTGGCAAATATTACTGCTGAGTTTCTTTTCAGTCAATGAAATTGCTTAAACTTTAGCTTT	69	+	chr2L	5466907	5466976	5466907..5466976	CG6634-RA,	FBgn0261963,	mid,	1	.
CG4004-RA	CGCCATTCACCAAGTTTTCACACGTTAATCACCATAAGAAGTTTTCGCACTGTGTAGCCACATTGCCGT	69	+	chrX	12642667	12642736	12642667..12642736	CG4004-RA,	FBgn0030418,	CG4004,	1	.
CG30358-RA	ATGATCAGCATATACGAGTGGAGTACTTAGCAGGCTGGTTAGATCAATTATAGAACTGAAGGCCTTATT	69	+	chr2R	4207716	4207785	4207716..4207785				0	no match
CG7279-RA	GACTTGCCAGCGATGATTGATCACGTGCTAAAGGTGACCGGATTCCCGAAACTGCACTACGCCGG	65	-	chr2L	10700449	10700514	10700449..10700514	CG7279-RA,	FBgn0023496,	Lip1,	1	.
CG9436-RA	GAGATTTGATCGCGAGAAAGGCGTAGTAGCACTGGTTTAGACTTAGAAGCGTCCAATTTGCACAGCGTT	69	-	chr2R	2646298	2646367	2646298..2646367	CG9436-RA,	FBgn0033101,	CG9436,	1	.
CG8983-RA	AGGAAACGTGTAGCAAGTACTCCGTCAGCGGCTACCCAACGTTGAAGATTTTCCGTCAGGATGAGGTGT	69	-	chr2R	7776715	7776784	7776715..7776784	CG8983-RA,	FBgn0033663,	ERp60,	1	.
CG3923-RA	CGTGTCCCCAAAGCCCTATGTTCTAACACCATCCCACCAGATTGCGTTTGGTTCTTCCTTGTGCGATGT	69	-	chrX	365591	365660	365591..365660	CG3923-RA,	FBgn0001337,	Exp6,	1	.
CG5024-RA	CGGAGGTACGAACAGTTCATACCCACACGCTGAATGATGAACAGCTCAAGGATTGTGAGGCGGCCT	66	+	chr3R	21636957	21637023	21636957..21637023	CG5024-RA,CG5024-RB,	FBgn0039373,	CG5024,	1	.
CG6724-RA	TGTTGCGTCAAAAAGATGGCTCTTCCGACACGGACTTCGACTTCCTGGTGTTCGATGAGTACCTGCG	67	-	chr2L	10769470	10769537	10769470..10769537	CG6724-RA,	FBgn0032298,	CG6724,	1	.
CG5783-RA	GTTCAGCAAACTGGGATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGTG	65	+	chr2L	18157013	18157078	18157013..18157078	CG5783-RA,	FBgn0032670,	CG5783,	1	.
CG8202-RA	CGCTGATCTGGAGAGGGAAACTATCGCTCAATTGGCAGTCAATCTGTGGCTCCTAGCTAACAAGGCACA	69	+	chr3R	4561071	4561140	4561071..4561140	CG8202-RA,	FBgn0037622,	CG8202,	1	.
CG4716-RB	GCAGAAGCACGGAGGATACGATGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGC	65	+	chr2R	9144524	9144669	9144524..9144547,9144627..9144669	CG4716-RB,	FBgn0033820,	CG4716,	1	.
CG13040-RA	TGAAGCATGTGGTGCCAGCTGTTCCCGTGATTAAGACTGTGGCTCCAGTGGTTCCTGTGGTCAAG	65	-	chr3L	16318548	16318613	16318548..16318613	CG13040-RA,	FBgn0036608,	CG13040,	1	.
CG14165-RA	GCTGCACGCTGAATATCCCTCACCGTCTCCATCGCAGTCCAGTATCTATGTGTCCCAGGGAACTG	65	+	chr3L	9876847	9876912	9876847..9876912	CG34382-RC,	FBgn0085411,	CG34382,	1	.
CG13788-RE	TCCATTGTCGAGGGAAGTAATCGAGCCATCAAAAAGAGCGAGAAAACTGGAGGCATAGTGCACTCCCTA	69	-	chr2L	7455326	7455395	7455326..7455395	CG13788-RA,CG13788-RB,CG13788-RC,CG13788-RD,CG13788-RE,	FBgn0045495,	Gr28b,	1	.
CR33465-RA	GGCGGTTGCTTTGCAACATTCCAATTTCCGCCCAAACAATGGCGTCAACGATATAGGCCTTTTAAGACT	69	-	chr2R	11708084	11708153	11708084..11708153	CG33465-RC,	FBgn0053465,	CG33465,	1	.
CG4367-RA	ACTGGCGATATCCCAGTAACCGTGAAACTGCCCAGTGATCTCAACTGCATTCATTGCGTTTTGCGC	66	-	chr3R	16130088	16130154	16130088..16130154	CG4367-RA,	FBgn0038783,	CG4367,	1	.
CG10036-RB	CCACCCGTTCAGGTCAATCCTCTCATTATCCTTTCACCTCTGGTCGTGTCTGTCTTCCAGCACCTGGAC	69	-	chr2R	16783362	16783431	16783362..16783431				0	no match
CG9342-RA	ATGATCGCCAGTTTGAGATCAAAACATACGTGCTGCAGAAGCTAAGAATGCTGGCTGAGAAGTGCCCGC	69	-	chr2L	20920360	20920429	20920360..20920429	CG9342-RA,	FBgn0032904,	Mtp,	1	.
CG8298-RB	AGGGGCATAATCTTGGGACTTACCAGCCAGACTACAGCGGAAAACATTACCCAAGCTGCTTACGAGGC	68	+	chr2R	7878070	7878138	7878070..7878138	CG8298-RA,CG8298-RC,	FBgn0033673,	CG8298,	1	.
CG5194-RA	ACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACTTTCCTCGAGCCAGATACCATGCATAAAACACTT	69	-	chr3L	9002342	9002411	9002342..9002411	CG5194-RA,	FBgn0035955,	CG5194,	1	.
CG5067-RA	TGCAGCAACGCAGACTCACAAAACGAAACGGATGTGCAACAAAGCTCACACTTAGCAAACGCTCATGCA	69	+	chr3R	16126546	16126615	16126546..16126615	CG43122-RA,CG43122-RB,CG43122-RC,CG43122-RD,CG43122-RE,CG43122-RF,	FBgn0262582,	cic,	1	.
CG18076-RH	CAGCAGGAACAGCACACAGTTCTACAAAAGAGACTAACTTTGAAGTGCCCTAATGGATTGGTGGAGCGA	69	-	chr2R	9752616	9752685	9752616..9752685	CG18076-RQ,CG18076-RH,CG18076-RG,CG18076-RE,CG18076-RA,CG18076-RC,CG18076-RB,CG18076-RI,CG18076-RJ,CG18076-RK,CG18076-RL,CG18076-RM,CG18076-RN,CG18076-RO,CG18076-RP,CG18076-RX,CG18076-RY,CG18076-RZ,CG18076-RA,CG18076-RB,CG18076-RC,CG18076-RD,	FBgn0013733,	shot,	1	.
CG30423-RB	GCCATACGGATCCATGTTCTAGAGGGGATTTGTAGTTCACAAGCTCACTAGGCTAGTAACCGGCGCAGG	69	-	chr2R	20762640	20762709	20762640..20762709	CG30423-RC,	FBgn0050423,	CG30423,	1	.
CG13258-RA	AGGATCCTGTCGAGAGATCCCTTCGAGTGCCTGCAATCGTTGATATGCCAACTGATGTCCGGAGC	65	-	chr2L	16292358	16292423	16292358..16292423	CG13258-RA,CG13258-RB,	FBgn0032582,	CG13258,	1	.
CG31911-RA	CCGCTCCGACCCAAATTTCGTAGTAGGCCCGGACTACTTTACACTGGTCACTTGCTTCGCGACCTTTAA	69	+	chr2L	6563640	6563709	6563640..6563709	CG31911-RA,	FBgn0026585,	Ent2,	1	.
CG5206-RA	TCCCTTACTCCGCTAACATAGAGTTCGTTGTTTCAATGAGAAATCGATCCGTAGGCTTGCCCCCACAAT	69	+	chr3R	16436789	16436858	16436789..16436858	CG5206-RA,CG5206-RB,	FBgn0023097,	bon,	1	.
CG12856-RA	CGGCTACGTCTCCTCCTAATCCTGCGCTGGAAATTGTGGCTGCCGTTTTGAAGGCTCTTTGCTAG	65	+	chr2R	10686102	10686167	10686102..10686167	,CG10197-RA,CG10197-RB,CG10197-RD	,FBgn0001319	,kn	1	.
CG6258-RA	GGAGAACCTACGCAACCTTTGCAAGCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGGT	67	-	chr2L	11129926	11129993	11129926..11129993	CG6258-RA,	FBgn0028700,	RfC38,	1	.
CG13881-RA	CGCATCGAAGACAAATACAAACGCTCCCTGTTCCAGCCTACGCAGGAAAGACATTCCGGCTCCAC	65	+	chr3L	281364	281429	281364..281429	CG13882-RA,	FBgn0259744,	CG42377,	1	.
CG1922-RA	ACCTTATTGGAACGGAATGCAATTGGCCTTAGGCAAAAAGATAAGACGTCCTTGGTAAAGCGGACAGGT	69	-	chr4	619834	619903	619834..619903	CG1922-RA,	FBgn0028996,	onecut,	1	.
CG5651-RA	CAGTCGCTGCTAAATGGCATGAACCGCTTCCTCGAACTGCTTGGTATTACGTTCCGTCGCGATCC	65	-	chr3L	8965535	8965600	8965535..8965600	CG5651-RA,CG5651-RB,	FBgn0086706,	pix,	1	.
CG5620-RA	GTCCACGCACCCAAAATCCCTATTCGCGGGGTAACATTTGCCTGAACTGCTGTCACATCCTGTGC	65	-	chr3L	12206482	12206547	12206482..12206547	CG42318-RH,CG42318-RI,CG42318-RJ,CG42318-RK,CG42318-RL,CG42318-RM,CG42318-RO,CG42318-RP,	FBgn0260941,	app,	1	.
CG9314-RA	AGGAGCTGATGTCCCACGATCCGGACTATGCCATCAGGGATCTGTACAACTCGATCAAGAAGGGCAACT	69	+	chr2L	8706439	8706508	8706439..8706508	CG9314-RA,	FBgn0032061,	CG9314,	1	.
CG31922-RA	CCTTCCTTGCAACCCATTAACCCGGAAAAACTCAAGCAAACCGACTTTGAACTCAGTTGGGGCTAAATA	69	+	chr2L	1170699	1170768	1170699..1170768	CG31922-RA,	FBgn0051922,	CG31922,	1	.
CR31696-RA	TTTGCAATTCATAGACCATGATGTACAGTATAAGCAAATTAAGAACAACATCAGCAATCAATGTGCACC	69	+	chr2L	16841649	16841718	16841649..16841718	CR31696-RA,CR31696-RB,	FBgn0047133,	pncr003:2L,	1	.
CG10626-RA	TGGCAACCACTTTAATTTAAACTAGAGCGATCTAAGTTATAGCCGTGTTCCAATGACACATTCCGCAGC	69	-	chr3L	5506234	5506303	5506234..5506303	CG10626-RA,	FBgn0035610,	Lkr,	1	.
CG6627-RA	TGCTTGCTTTAGAATGCCAGCGAATGTTGCGTTGATTATTTGTACACCGATGCATTCTTTGGCCACCCG	69	-	chr2L	10854818	10854887	10854818..10854887	CG6627-RA,	FBgn0027453,	Dnz1,	1	.
CG6596-RA	TCGGGGAGTTTGGCCGATATCAGAAGCTACTGTTCATCTGCATGATCCCATTCTCGTTTTTCGTGGCCT	69	+	chr3L	6059829	6059898	6059829..6059898	CG42269-RC,CG42269-RE,	FBgn0259164,	CG42269,	1	.
CG12094-RA	GTAAACTCTATAAAGAGCGCTTACCCTTCGTCACTCTCCTGAGCATCATTCAAATCATTTTCGCCTGCG	69	+	chrX	10031932	10032001	10031932..10032001	CG34104-RA,	FBgn0083940,	CG34104,	1	.
CG13972-RA	GAACTCGAAAAGCGTGTCACCAAGGAAAAGCTACAGGACCTGGAGGAACGCATTGCCGACACCAA	65	-	chr3R	23342170	23342235	23342170..23342235	CG13972-RA,	FBgn0039522,	CG13972,	1	.
CG8142-RA	AGGGCCCGAGCACATCATCAACACTGCTGATCTGTTCGAGATGTCGGGCGTTATACCGGAGTACTATCT	69	-	chrX	17737779	17737848	17737779..17737848	CG8142-RA,	FBgn0030871,	CG8142,	1	.
CG6750-RA	GTAGATTTTGTTTCGAGTCAGAGAGGGTTAAAATAAAGCAAGTTGTGTGACTACAATGGGAAACC	65	-	chr2L	10731427	10731492	10731427..10731492	CG6750-RA,	FBgn0032292,	CG6750,	1	.
CG30171-RA	TGCTCACCACATTTTAGTCAATTAGCTGCGAAGTAGTGTTAAGAGGAATGTTGTTTTTATTTCTTGTAT	69	-	chr2R	19883152	19883221	19883152..19883221	CG33519-RB,CG33519-RC,	FBgn0053519,	Unc-89,	1	.
CG12782-RA	ACCAAGCTGGTAATCGTGGACCGGAGTTGTACAACTACTCCTCCAGTCATGAATCAATTCGGCCAGCCA	69	-	chr2R	19152897	19152966	19152897..19152966	CG12782-RA,	FBgn0034838,	CG12782,	1	.
CG12522-RA	CAGGCAACCTCAACATCGCCCACGAGTAGCTCTTCCACTTCGCCGACGAGTAGCTCTTCCACTTC	65	+	chr3L	11101422	11101487	11101422..11101487	CG12522-RA,	FBgn0036131,	CG12522,	1	.
CG30459-RA	AGTCAACTTAAGCCGGAAGAGCAGGTGGTCATTGCAGCCTCTGAGAATCTATCAATGGGTCCTTTCCCA	69	-	chr2R	12921254	12921323	12921254..12921323	CG43327-RA,CG43328-RA,	FBgn0263032,FBgn0263033,	CG43327,CG43328,	2	.
CG1318-RB	CACCGGCCAGACTCACCCTGGATACGGATGAGAGCTATACGCTGGACATTGATACGGATGCCTCG	65	+	chr3L	4289598	4289663	4289598..4289663	CG1318-RA,CG1318-RB,CG1318-RD,CG1318-RE,	FBgn0041630,	Hexo1,	1	.
CG11271-RA	AGCTATTCGCTAATTGAAAATAAAACGTATTGAACCTGAATCCAGATGAAAAAATAAAAGAAAGTCGAC	69	+	chr3L	13017787	13017856	13017787..13017856	CG11271-RB,	FBgn0260441,	RpS12,	1	.
CG6719-RA	AGGCAACAGGATGACAGGAATAATGGACTCGGTGGAAATGCCCAAATTACCGGAAAACCAGAAGACCTT	69	-	chr3R	7235431	7235500	7235431..7235500	CG6719-RA,	FBgn0037893,	CG6719,	1	.
CG12377-RA	CGGTCTGCGCTATACGAATGAGCTAAAAAGGCACTGTCTGGGCCAAGACATAAGTGAGGGAGGTGTCCT	69	-	chr3L	22497823	22497892	22497823..22497892	CG43329-RA,	FBgn0263034,	CG43329,	1	.
CG12931-RA	CTGAGAGCCTTTCCTTGGGAGAAGCAGCCTACAGCAGTGCCTGGTATACTTGGGATCGAGAGACC	65	.	.	.	.	.	CG12931-RA,	FBgn0033422,	Or45b,	1	.
CG32774-RA	GCAGGTATCACCACATCCACAGAGACATCCACAAGTGCACAGTCGACCTCTACCATTCTGGCAGACACA	69	-	chrX	4139339	4139408	4139339..4139408	CG32774-RB,	FBgn0052774,	Muc4B,	1	.
CG8589-RA	GCCTGCTCGCGATATTGAATCCATTATCGAATTACAGCAGCGCATTAGGGTGCAGTTGGTGAGTTTGGT	69	-	chr2R	10188436	10188505	10188436..10188505	CG8589-RA,	FBgn0033921,	tej,	1	.
CG9525-RA	CTCCTGTTCCCGAAAATCGAACCTGTTCAGATGCTGGCATAGGAGAATCCCAATGTCCATGTGATAGCT	69	-	chr2L	8960823	8960892	8960823..8960892	CG9525-RA,	FBgn0032080,	CG9525,	1	.
CG9672-RA	TCTGCAGGAGGAGATTACTTTCAGTGAGACAGTCAATGCCATTCCACTCTCCCAGGACGTTCCGCC	66	-	chrX	16600367	16600433	16600367..16600433	CG9672-RA,	FBgn0030777,	CG9672,	1	.
CG7808-RB	GAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGAAAAGGTTATGAAGAAGTACCTGGAGCGC	66	+	chr3R	25688791	25688857	25688791..25688857	CG7808-RC,CG7808-RB,	FBgn0039713,	RpS8,	1	.
CG31170-RA	ACCCCCGATGCAATTTTCCGGATCAAACCCATTAATTCCACATCCGTCCTGATCGTCCACTCGGAATTT	69	+	chr3R	18244478	18244547	18244478..18244547	CG42250-RC,	FBgn0261279,	lqfR,	1	.
CG3298-RB	ACGCGAAACGTGAGCTCCATTCTGATCAGGACTGCAATTGATGCCTACGTGTTGTTGGATTGTGGAGAA	69	-	chr2R	6195634	6195703	6195634..6195703	CG3298-RB,	FBgn0028426,	JhI-1,	1	.
CG17687-RA	CGAGCGTATCAAGGTAGACGTCACTTTCCAAAACACTTTGCGCGATACGATGATGGAGGACAAGCGGGA	69	+	chr3L	13347360	13347429	13347360..13347429	CG17687-RA,	FBgn0036348,	CG17687,	1	.
CG9218-RA	AGGCACCAAGTTCCCATTCATCATGAAGCTGTGCTTTTCCTCATCCAAGAGCATGAACGGCGCCTG	66	-	chr2R	15418141	15418207	15418141..15418207	CG9218-RA,CG9218-RB,CG9218-RE,CG9218-RG,CG9218-RH,CG9218-RI,CG9218-RK,CG9218-RJ,CG9218-RL,CG9218-RM,	FBgn0003435,	sm,	1	.
CG1707-RA	CACTGGCAATTCCCTCGCGGATTTTATCAACAGGTGGTTGGTTAATTGCCTTAAAGCATCGGAATGGGC	69	-	chr2R	3283365	3283434	3283365..3283434	CG1707-RA,	FBgn0033162,	CG1707,	1	.
CG11084-RA	CTGCCTCTCCACAAAGCAAAATAAAGTTCAACTTGACATTAAGGCGCCTAGTTAAGGTACACTCACAAA	69	+	chr2R	3110498	3110567	3110498..3110567	CG11084-RA,CG11084-RB,CG11084-RC,	FBgn0003090,	pk,	1	.
CG31140-RA	GCGGGCCTAGCTCGTCCTGTGTGCCATTGAATTAAATGCGGAAAAACACCTTTGGATTGTGCAATTGGT	69	+	chr3R	19808748	19808817	19808748..19808817	CG31140-RA,CG31140-RB,CG31140-RG,	FBgn0051140,	CG31140,	1	.
CG7971-RC	AAGATAGTTGTTATGCGCATTTAACTTGTTTTACACTGCATTCCGTAGCCCTAAGTTAGTCATCTGCCC	69	-	chr3L	1654382	1654451	1654382..1654451	CG7971-RC,CG7971-RF,	FBgn0035253,	CG7971,	1	.
CG33134-RA	GGATCGCGTCGTTAAGAAATACAATCGTACCATTTAGTCAATGAGAGCTTCAAATCATTCCTGCTTCCA	69	+	chr2R	2540160	2540229	2540160..2540229	CG33134-RA,	FBgn0029131,	debcl,	1	.
CG10183-RA	AGGCGGTCTGCATTCACTTTGGAGTCGAACTGGATGTACAAAGTCGCCAGAGGTAGTACGGCCTGTATT	69	-	chr3R	19422331	19422400	19422331..19422400	CG10183-RB,	FBgn0039093,	CG10183,	1	.
CG16772-RA	GTCTGGATATCCCTCCTATCCGACCTTCAGATCACCGTACTCGCCCTACCAACCCCAGGTGTTCC	65	+	chr2L	19963385	19963450	19963385..19963450	CG16772-RA,	FBgn0032835,	CG16772,	1	.
CG7662-RB	ACGCTACACACCAAAGGTTCTCGAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCG	69	-	chr3R	20890375	20890444	20890375..20890444	CG7662-RA,CG7662-RC,	FBgn0039269,	veli,	1	.
CG7097-RA	GCAGGAGAATCCAAGTATACATACACTTAAACACGCAATTATCCACACGATTCGAGACCGACTAAGGCA	69	+	chr2R	15114138	15114207	15114138..15114207	CG7097-RA,CG7097-RB,	FBgn0263255,	hppy,	1	.
CG17611-RA	AGCAGGCTCAGTCAGGCCAGTAAATCCGAAAAGAGAGTAACCAGCAGGAAAAGAGGATCCACGTAAATA	69	-	chr2R	19737603	19737672	19737603..19737672	CG17611-RA,	FBgn0034915,	eIF6,	1	.
CG7085-RA	AGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATATGACGACACATCCGCTGAGCG	69	+	chr2L	2229712	2229781	2229712..2229781	CG7085-RD,CG7085-RA,CG7085-RE,	FBgn0010704,	l(2)s5379,l(2)s5379,l(2)s5379,	1	.
CG6168-RB	TGTGCGCTCAGAACGTCCACTATTCAAGTTTGAGCCCGGTATAGATGTAGATGATGACCACCTGCCTTT	69	-	chr3L	11313974	11314043	11313974..11314043	CG6168-RB,	FBgn0036154,	CG6168,	1	.
CG10194-RA	AGGGACAGCAAATCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCGCGC	65	-	chr2L	19489513	19489578	19489513..19489578	CG10194-RA,	FBgn0032790,	CG10194,	1	.
CG16960-RA	TCGTGTGGCTCGAATGCTTTCGAAAAGTTACTTGGTAGCTGCTATATCGGCCATAATCACTGCAACTGT	69	+	chr2L	11934857	11934926	11934857..11934926	CG16960-RA,	FBgn0026392,	Or33a,	1	.
CG16723-RA	TTCCTACTCCATGTATATTTGGCACATGTTTGTACAAGAGGTGAATAGCAGGAACGTGCGGACTA	65	-	chr3R	19419668	19419733	19419668..19419733	CG16723-RB,	FBgn0039092,	CG16723,	1	.
CG31206-RA	GGGCCGTGCATAGAGGCTGTGGTGACCACTATAGTTATTCGGCAAATTTGCAGAACTCTAAACCTGAAT	69	-	chr3R	15932961	15933030	15932961..15933030	CG31206-RA,	FBgn0051206,	CG31206,	1	.
CG9078-RA	GCCAAGGGCTTTGAGACGTACTCCTACTACGGTCCGCTCAACTGGATCACCTTCAATGTGGGCTAC	66	+	chr2L	5987925	5987991	5987925..5987991	CG9078-RA,	FBgn0001941,	ifc,	1	.
CG3251-RA	CGCCTGCCAGATGTTGATCTCGCTGTGGAATGGATGCTGTATCCAGATACCTTCAAAATGGGCACTGAA	69	-	chr2L	4689962	4690031	4689962..4690031	CG3251-RA,	FBgn0031622,	CG3251,	1	.
CG32550-RA	GCCTATGCTGCCCCCGCCTACGCTGCTCCTGCATACGCTACGCATCTAGCTGGGCCCGTGGTGAA	65	+	chrX	18320344	18320409	18320344..18320409	CG42323-RC,CG42323-RE,	FBgn0259223,	CG42323,	1	.
CG9272-RA	TCGCATGGTAACCAGAGTTCAAATGGGTTCGGCTACTGTGGTCATATGCAAGGTGGTCCCTGATGCT	67	-	chr2L	20927375	20927442	20927375..20927442	CG9272-RA,	FBgn0032907,	CG9272,	1	.
CG10311-RA	TAAATTCGTGCTGTCTGTGCCAATCGACCCGGAATGGCTCCGTTATCTCGGGCATACTGGCGATA	65	-	chr3R	12177972	12178037	12177972..12178037	CG10311-RA,	FBgn0038420,	CG10311,	1	.
CG7810-RA	CCGGTCGAAGAGAAGCAACAAATAGCACGAGATGCCTTCGATAAGAACCGTGAGAACTTTCTCATCCGA	69	-	chr2L	8310892	8310961	8310892..8310961	CG7810-RA,	FBgn0032017,	CG7810,	1	.
CG10148-RA	GCTCTGCAAGGAATTCCGGATTTGGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGAT	68	-	chr3R	8957212	8957280	8957212..8957280	CG17319-RA,	FBgn0260793,	2mit,	1	.
CG5919-RA	GGGCGAGCACGAGATAGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCCAAATAGCAACGA	69	+	chr3R	17096520	17096589	17096520..17096589	CG5919-RA,CG5919-RB,	FBgn0038876,	CG5919,	1	.
CG8261-RA	GCCGCCCTATCAATCGAAACTGCAGTCGGTTACGGGAGTCCTCCCAGTTTCTGCTTAAACATTCCGC	67	+	chr2R	4791760	4791827	4791760..4791827	CG8261-RA,	FBgn0004921,	Ggamma1,	1	.
CG1463-RA	AGGCAAGCCTTCCCCGGAATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTCACGCTG	65	-	chrX	12504992	12505057	12504992..12505057	CG1463-RA,	FBgn0030406,	CG1463,	1	.
CG17678-RA	TGGACGCTCGCGAAAAATTAAACATTGCGTGGGGAAGTGACGGCAGAGAACAGGATGCTTATGATGCCA	69	.	.	.	.	.	CG17678-RA,CG40005-RC,	FBgn0000384,FBgn0058005,	cta,CG40005,	2	.
CG7936-RA	CGTGGTGATCGGCTTGATTGTCTACTTCACGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCA	69	-	chr3L	15510999	15511068	15510999..15511068	CG7936-RA,CG7936-RB,	FBgn0004228,	mex1,	1	.
CG8228-RA	GCCCCAATGTGCCGAAAGACTTCAAGGAGCTGGTCTTATCCGGTGATCAGGATGACTTCTATGGCAACA	69	+	chr3R	5390627	5390696	5390627..5390696	CG8228-RA,	FBgn0261049,	Vps45,	1	.
CG10268-RA	GGCCCAGGGTGAACACAACCACATCCAGTATCTGATGAGCACAGCGTAGAACTTAGGAAATCGAGGCCA	69	-	chr2L	19580203	19580272	19580203..19580272	CG10268-RA,	FBgn0032811,	CG10268,	1	.
CG11094-RB	TGTGACAGCCGTTCTACGCGTCAGCTTTCTTCAATCAACATTACCCCGTGCTGAGATGTCTGGCCTCAA	69	-	chr3R	3760982	3761051	3760982..3761051	CG11094-RB,CG11094-RC,	FBgn0000504,	dsx,	1	.
CG3174-RA	CCACAGCACGGATACCTGTGACCCAGTCTACTACGACTTCGTTTATGTCTGCAACGGGCACTACACGGA	69	-	chr2R	2531805	2531874	2531805..2531874	CG3174-RA,	FBgn0033079,	Fmo-2,	1	.
CG4960-RA	GCTGGAGTGCCAAAGGACGACTAGGACAAACATTTGCGTTAACTCCATGCATTTGGTTTACGGTCTGCA	69	-	chr3R	21612374	21612443	21612374..21612443	CG4960-RA,	FBgn0039371,	CG4960,	1	.
CG4562-RA	CGACTGCGTTTGTGTTGTCTACATCGCTGTAATCACATTGAGCTTCTTCCTCTTCTCCCCGGAGAACGG	69	-	chr3R	15694254	15694323	15694254..15694323	CG4562-RA,CG4562-RB,	FBgn0038740,	CG4562,	1	.
CG12164-RA	CTGGAAGGAGGAGAAGGTTCCCGACTGGAAGATCGTAAAGAAGCCGAAAATTGAGGAGAGAGAGGTGCC	69	+	chr2R	3199688	3199757	3199688..3199757	CG12164-RA,	FBgn0033158,	CG12164,	1	.
CG2781-RA	GCCCATGCGGTTATGTTCTACTTCCTGTTCTCAAACTTCTACAAGCGTGCCTATGTGAAACGCGATGGC	69	-	chr3R	3808409	3808478	3808409..3808478	CG2781-RA,	FBgn0037534,	CG2781,	1	.
CG16931-RA	CGATCGCGATTTACCCCTCTTCAATAGAGAGTGCAGACAAAGGACCGAATTATCTTGGCGCTGGA	65	-	chr3L	15642458	15642523	15642458..15642523	CG16931-RA,	FBgn0004588,	Eig71Ea,	1	.
CG1046-RA	TCGGGCCACTATTCCTACAACGTGGATTTGGTTCTGCAGAGCATCAAGCAGGATTTGGAGGCAGC	65	-	chr3R	2578946	2579011	2578946..2579011	CG1046-RA,	FBgn0004053,	zen,	1	.
CG18561-RA	CTGCTGATGGCCAGATGAAGATGGCAACCTGCGGACATGGCTCCATAAACACAAAGACATCCAGC	65	-	chr2L	10792408	10792473	10792408..10792473				0	no match
CG13338-RA	AAAAAGGAGCCTTACTCATTAACTCATCGAAATGCTCTTAACTTGGCTAAAGATTCTCGCAGGTTATGC	69	+	chr2R	9674729	9674798	9674729..9674798	CG13338-RA,	FBgn0033867,	Cpr50Ca,	1	.
CG13329-RA	GGGGTCGGCAATTTTAGTCCAAAAGAGAAGTTTAGGCTTAGTTTAGTTATTTGTTTGAATAGTTGTGTA	69	+	chr2R	9373856	9373925	9373856..9373925	CG13329-RA,	FBgn0040477,	cid,	1	.
CG18816-RB	TAGAGCCGAAGTCAGATACAATCCTTAGACGTAGCCCAGTTCATAGCATAAATCCAACACACGAA	65	.	.	.	.	.	CG30160-RA,CG18816-RB,CG18816-RC,	FBgn0050160,FBgn0042086,	CG30160,Tsp42Eb,	2	.
CG3297-RA	GCAGGCGATCAACCTGTGGTGCTCCAAATTCTTCATCTGTATGCCCAACCAGGAGAAGTTCGACTAGGA	69	+	chr3L	14984249	14984318	14984249..14984318	CG3297-RC,CG3297-RA,CG3297-RD,	FBgn0002778,	mnd,	1	.
CG15104-RA	GGCGATGGAAGAGCACGACATAGCCAACTCCCTAATCGAACTGTCCACTCTAACGCAGCCTGTGAACAT	69	+	chr2R	14863779	14863848	14863779..14863848	CG15104-RA,	FBgn0034410,	Topors,	1	.
CG4313-RA	CGGCTCGTGTTCCATCATGCATGATCGGTATGGTAGATCCCCCAAGGAGTTCCTCTTCATCGCCG	65	+	chrX	1947966	1948031	1947966..1948031	CG4313-RA,	FBgn0025632,	CG4313,	1	.
CG1404-RA	CAGCTCACCGTTCCAGAAATTTTGCATTAACGAAGATACCGAGTGCTTAGAAGGATGGCTCAGGAAGGT	69	-	chrX	11040395	11040464	11040395..11040464	CG1404-RA,	FBgn0020255,	ran,	1	.
CG13293-RA	GCCGAGGAAAATCGTACAAGGAGAACCACTGCCTATATCCGGGTGATCTATATCCGTTCACACGCCGGC	69	+	chr3L	6082378	6082447	6082378..6082447	CG13293-RA,	FBgn0035677,	CG13293,	1	.
CG6747-RA	TGTTCATCTGGCCCACTACCATAGTGCACAAAATTGATAGGAACAGTCCACTGTACATGCTCTCCGCCT	69	+	chr3R	19009775	19009844	19009775..19009844	CG6747-RB,CG6747-RE,CG6747-RD,CG6747-RC,	FBgn0039061,	Ir,	1	.
CG1233-RA	GGCAAGTGCCTTGTGGAGGGCTGTATGTTCCGTTTCAAATCACCCGTAACTTTGGAGTATCACGGCAGA	69	+	chr3L	364174	364243	364174..364243	CG1233-RB,CG1233-RA,	FBgn0035137,	CG1233,	1	.
CG4553-RA	GGACGGGAAAGGGTGACTTCAGTATCCCACCGTCTCTTCTCCAGCATCTGCAGAAATTCGCCGAG	65	-	chr3R	21302023	21302088	21302023..21302088	CG4553-RA,	FBgn0039336,	CG4553,	1	.
CG31248-RA	CGGCAAGCTCGTTTGGACTTGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT	69	+	chr3R	2955964	2956033	2955964..2956033	CG31248-RA,	FBgn0051248,	CG31248,	1	.
CG12692-RB	GGCTTGCTGGTCGATATGCCCAGGGAGTGGATATACGATGAGCAGTGCCATTATCATTTGCCGCGAC	67	-	chrX	4194990	4195057	4194990..4195057	CG12692-RB,	FBgn0029703,	CG12692,	1	.
CG17187-RA	AACTGCAAAACAAACCCATGTTCCAGTTGTTGAATAAGGAGTAAAATAAGACTAAATGGCTAGCAAAAA	69	-	chr3R	7057416	7057485	7057416..7057485	CG17187-RA,	FBgn0037882,	CG17187,	1	.
CG10064-RA	GTGCGCTTTACCCACGATGGCACTAGCATAGTCTCCGTTTGGAACGATGGCATCATTCGCGCCTT	65	-	chr3L	6959466	6959531	6959466..6959531	CG10064-RA,	FBgn0035724,	CG10064,	1	.
CG12816-RA	CAGGAGGTCCTGTGCGAGTTCGTCACTGCTGTGCTCATCGTGGAGAGTGGTGAGTTTTGGACTATTGAT	69	+	chr3R	6051826	6051895	6051826..6051895				0	no match
CG13307-RA	GGTGTCCGGGACCAGACTATCAACTACACTTGCCCCGAATCAAAACCCATTTGCACAACCTACGGAATT	69	+	chr3L	8795738	8795807	8795738..8795807	CG34426-RA,	FBgn0085455,	CG34426,	1	.
CG8316-RA	ACCGATTGGCTTTCTCCTTCAGAAGAGGCAGGTGTCCCAAATGCGGAATTAGAAGAGGACAGTGACGAA	69	-	chrX	17524760	17524829	17524760..17524829	CG8316-RA,	FBgn0030852,	CG8316,	1	.
CG2163-RB	CGCCGGAAGCTTTTGCGCCAACAAAACCGAGCTTTTGTAGCAGACGTAAACAAACCCAAATCCAAAGCA	69	+	chr2R	4019469	4019538	4019469..4019538	CG2163-RA,CG2163-RB,	FBgn0005648,	Pabp2,	1	.
CG3694-RA	GGGGTGGTATGTGGATAAATTTTAGCCGCCATGGATCCCAGTGCTCTACAAAACATGGATCGGGACGCA	69	+	chr2L	9272464	9272533	9272464..9272533	CG3694-RA,CG3694-RB,CG3694-RC,CG3694-RE,CG3694-RF,	FBgn0028433,	Ggamma30A,	1	.
CG11368-RA	ATTCCCGACTCCAATTTCCCTCATAAGGCTTACTGAAATGTCACCTAGAAAATCCTTTTGTTAAGTCC	68	+	chrX	7346558	7346626	7346558..7346626	CG11368-RA,	FBgn0040923,	CG11368,	1	.
CG10978-RA	GCAGCTGTTAAGGTATCGCACACTTAGTCATACAGGAAGGGAAACATATGGTCGAAACTGAGCGAAGCG	69	+	chr3R	1606214	1606283	1606214..1606283	CG10978-RB,CG10978-RA,	FBgn0037374,	jagn,	1	.
CG13578-RA	CGTAGAAGACACCAAATCATCGAAGCCCTGCTCCTGCTCAGCCAAGTCCAGTACAACGAGAATGGCC	67	+	chr2R	20265690	20265757	20265690..20265757	CG13578-RA,	FBgn0035000,	CG13578,	1	.
CG14839-RA	CAGCGCAAGAGGCCAAACAGCGTATAGATCAATCGGAGTGTGAAGGCGGTTCTCGTGGCAGAAGG	65	+	chr3R	10088927	10088992	10088927..10088992	CG14839-RA,	FBgn0038219,	CG14839,	1	.
CG10501-RA	CTACCTGAAGCACAAGCACGAGGGTCAGTCGCAAATTCCTGACTTCCGTCATTGGCAAATCCCCC	65	+	chr2L	19113470	19113535	19113470..19113535	CG10501-RB,CG10501-RA,	FBgn0000075,	amd,	1	.
CG6829-RB	AGGCCAAGATCAGCTATTTGGTAGCCACGGATGATGGTACCATGTTGGCTATGGGTTTCGAAAATGGCA	69	+	chr2R	12913108	12913177	12913108..12913177	CG6829-RB,	FBgn0024252,	Ark,	1	.
CG10217-RA	CCCCAATTCGGAGGCATGGAAATATGATCTGTTTCTTGCTCGAAATCCTGTGCCTGTTCGTTGCCCCGT	69	-	chr3R	19587391	19587460	19587391..19587460	CG10217-RA,CG10217-RB,	FBgn0039113,	CG10217,	1	.
CG9847-RA	CGACGAGCTGTAGTGCTCAATAATGGGGGTTCTTGGTTTGCCGTCAACATCGAAGGGACACGAGTGC	67	-	chr2R	17375116	17375183	17375116..17375183	CG9847-RA,CG9847-RC,CG9847-RD,	FBgn0010470,	Fkbp13,	1	.
CG2152-RA	GGTACAATATTATAACAAACTAAACAAAACAACAAGACGGTGGAAAAAGGGAATCTTGTGGTGCGGATT	69	-	chr3R	1379938	1380007	1379938..1380007	CG2152-RA,	FBgn0086768,	Pcmt,	1	.
CG15707-RA	TGGTGTGGGACAAAAAGGATGTGCCAGAGAACAAACGGACCTTCAAGTCGAAACCGCGTCTTCTTGACA	69	-	chr2R	12126224	12126293	12126224..12126293	CG15707-RA,	FBgn0034098,	krimp,	1	.
CG17150-RB	CGCCAATGGACTTGGTCATGTTCCGTTTTGCTATCGAACATGTGAGCAGGTAAGTGTGAGGAATTTTGA	69	+	chr3L	4885217	4885286	4885217..4885286				0	no match
CG15580-RA	GCGCCTGAAGTGAGGGAATCGCACACTTCAAAGGATTCGCACCCCTCTCAAAATGGAAAGACAGAACCA	69	-	chr3R	1880634	1880703	1880634..1880703	CG15580-RA,CG15580-RC,	FBgn0037398,	CG15580,	1	.
CG8258-RA	GGAGTTGGGCTACTGCGACAAAGTTTGCATCGAGGAACTGGGAGACACCACAATTGTGGCCTTCA	65	-	chr2R	4793148	4793213	4793148..4793213	CG8258-RA,	FBgn0033342,	CG8258,	1	.
CG31715-RA	TGAGGAAATCAAGGGCCGTTTTCCAGTACACTATGCAGCAGATTTTGGACAACTGAATGTCCTGGAGTT	69	+	chr2L	10341835	10341904	10341835..10341904	CG31715-RA,	FBgn0051715,	CG31715,	1	.
CG1295-RA	AGAGTGAAGCCTCTGTACGATCGCTACCAACGCGACATCGAACTACATCTGTGGGAGCCCATCAATCGA	69	.	.	.	.	.				0	no match
CG7902-RA	AGGATGTTGACGAGAATGTGGAGATCGACTAGGTTGGGAGTGACCATGTCTCGGAGGAGAACCGGG	66	+	chr3R	17215974	17216040	17215974..17216040	CG7902-RA,	FBgn0004862,	bap,	1	.
CG3847-RA	AGCTCACGATCACCCGCTATTGTGTAATAACCCGAAACTCCAAATACTGACACACAAAACGAGCGTCAA	69	+	chrX	6243169	6243238	6243169..6243238	CG3847-RA,	FBgn0029867,	CG3847,	1	.
CG4996-RA	CCTAGACTGGAGCAACGTTTACGCTCGGTCGAGGTTAACGTTCTGCCACAAATCAAGCTATGGCCCCTT	69	+	chr2R	13629854	13629923	13629854..13629923	CG4996-RA,	FBgn0034271,	CG4996,	1	.
CG17104-RA	GAGATCACCACTATTCTGCCACAGGACGGAGCCACGACTCCTAATGCTGAGACCGAGGAAACCAC	65	+	chr2L	10678381	10678446	10678381..10678446	CG17104-RA,	FBgn0040496,	CG17104,	1	.
CG2209-RA	TGGCAACGACGACATGACAGCCCTTATTTGCGATAGGCCACTATGCTGAACGGACTTTGATTATCGATT	69	+	chrX	12916804	12916873	12916804..12916873	CG2209-RA,	FBgn0030441,	CG2209,	1	.
CG32268-RA	CAAATCAAGTTCCTGTTCACCTTCCTCGCTCTGCTGATGATGGTCATCCTGGGCGCCAAGGAAGC	65	-	chr3L	3336291	3336356	3336291..3336356	CG32268-RA,	FBgn0052268,	dro6,	1	.
CG7706-RA	AGGAGGCCCAAAAAAGGAAGCAGCTCAAAAATCGGGACTCTGATGACGAAGATGAGTTTTGGGACCGCA	69	+	chr3R	14504680	14504749	14504680..14504749	CG7706-RA,	FBgn0038640,	CG7706,	1	.
CG6177-RA	TCGAGCTGACAAACATGGTGGAGGACAGTATCAAGCTAAAGGATAACAGCGCTTAGTCACCAACAACGA	69	-	chr3R	11184991	11185060	11184991..11185060	CG6177-RA,	FBgn0026634,	ldlCp,	1	.
CG6888-RA	AATACAAAACCGTCAAGATGCGTATGCTCAATATTAACCAAGTGGCTCCTAATTTTACTACCAATGCGG	69	+	chr3L	15201008	15201077	15201008..15201077	CG6888-RA,	FBgn0036490,	CG6888,	1	.
CG6792-RA	GGAAACGGTGGACAGTAGCTTTCCCGATGACTTTGAGCTTCCCGTGATCGAAACGTCACCCAAGAAGAA	69	-	chr2L	12047483	12047552	12047483..12047552	CG6792-RA,	FBgn0032401,	CG6792,	1	.
CG32504-RA	GCCGCCGATTACACACATGGGAGCTGTAAACCGCGTTTTATGATTTCCCTTCATTTTTTTATGGACCCA	69	-	chrX	20403973	20404042	20403973..20404042				0	no match
CG13394-RB	TCCGGAAGTACGGGAATGGATTTGTAGGAGATATGGTAAGCGATATGGTCCACAAAGCCATGCGGATTT	69	-	chr2L	8390421	8390490	8390421..8390490	CG42820-RA,	FBgn0262002,	CG42820,	1	.
CG2200-RA	GCTGCAGAAATAACCAAGCAAAACGATCGAATTAAAGAGAACATTGATGTTTATTGTACATATGCACAT	69	+	chrX	12989525	12989594	12989525..12989594	CG2200-RA,	FBgn0030447,	CG2200,	1	.
CG2843-RA	GCGAAATGGAATCCCGTCGAAAGCTGCTTGAGAACCCCGTCAAGCTGAAGGAAATCCATCGCATTCTCA	69	+	chr2L	2745802	2745871	2745802..2745871	CG2843-RA,	FBgn0031452,	Cwc25,	1	.
CG3117-RA	GCCAACATCCAGACCATTCGCTTACCCATTCCGGACAAGACTTTCGATCGAAGGATATGCACGGTCGCA	69	-	chr2L	2846473	2846542	2846473..2846542	CG3117-RB,	FBgn0031471,	CG3117,	1	.
CG18743-RA	CTTCTTCCACGGCAAGAACCTCAACCTATCCATCAACCCAGACGAGGCAGTTGCATACGGAGCTG	65	.	.	.	.	.	CG31366-RA,CG18743-RA,	FBgn0013275,FBgn0013276,	Hsp70Aa,Hsp70Ab,	2	.
CG17569-RA	CGCCAGCCGGAATTAGTGCCTACATGAGCAAGAGTCTGGTGACCAAGATACCCACTACCATGACCATCA	69	+	chr3L	3210094	3210163	3210094..3210163	CG17569-RA,CG17569-RB,	FBgn0035416,	gry,	1	.
CG15525-RA	TGCTGAACTCATCCGTGAGCGACTGAAACTGAACCAAATGGAGGATATCAGCCAAGCGGTGAATGTGGC	69	-	chr3R	25822791	25822860	25822791..25822860	CG15525-RA,	FBgn0039732,	CG15525,	1	.
CG13230-RA	GCCATCCAGAAGATAATCGACGCTTACAATCGGATTCCGGGTCCTTCAGTTGTTCACCCCTGGGAGG	67	+	chr2R	7042540	7042687	7042540..7042559,7042639..7042687	CG13230-RA,	FBgn0040764,	CG13230,	1	.
CG8786-RB	GCGACAAATCCTGTACAATTTTGGTAGCCGGCTACGTCTACATTGTGGACTTGGAGCAGCTAGTC	65	-	chr3L	19633296	19633361	19633296..19633361	CG8786-RB,CG8786-RC,	FBgn0036897,	CG8786,	1	.
CG7980-RA	GCCCTGGCCTTTGAAGAGGCTGTAATGCAGGAAATTAGGTCTATTAAGAATAAGCCTCAGGAACAGGCC	69	-	chr3L	1669109	1669178	1669109..1669178	CG7980-RB,	FBgn0035255,	RabX5,	1	.
CG12977-RA	GGCTGTGGAGCCAATTGTTAGGGAACAAATTAGGGACATCAAACCTTTACCGGGATTCCTGCAGGCCTT	69	-	chr3L	21178083	21178304	21178083..21178118,21178270..21178304	CG42337-RB,CG42337-RC,	FBgn0259239,	CG42337,	1	.
CG15507-RA	TCAGCGACAGGATTATGCATCCCTTCAAATGGGCAGACAAGTGAGTGGACTAGTTAAGTGCGTACGATA	69	+	chr3R	25593269	25593338	25593269..25593338				0	no match
CG8594-RA	GCTGTCCTGTGCTACGTTTGGTCTCAATGTGTCCTTGGGTGTCTTCATCCCAACTGCTCTGGTCG	65	+	chr2R	8461566	8461631	8461566..8461631	CG8594-RA,	FBgn0033755,	ClC-b,	1	.
CG7764-RA	TCAGGACTGTGGCTACATTGTGGTGGAGACGAACTACCGAGTGTATGCCTACACTGATTCTCCGCTCCA	69	-	chr3L	15572490	15572559	15572490..15572559	CG7764-RA,	FBgn0261109,	mrn,	1	.
CG14532-RA	GACGCCACTGCATGCAGTATCCACTTTCGTACTATCCACTATCCAGTGTCCCGAACCCCAAGCCC	65	-	chr2L	7899872	7899937	7899872..7899937				0	no match
CG13252-RA	CCGCCACCGTAAATTGCAACAACGCCTTTGACCAACCGAAAGTCGTAGAGGTGGTAAACCAGACCAACT	69	+	chr3L	20736555	20736624	20736555..20736624	CG13252-RA,	FBgn0037016,	CG13252,	1	.
CG14021-RA	CGGAGCAGCTCCCTACACCGTTACCATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTCAA	69	-	chr2L	5331728	5331797	5331728..5331797	CG14021-RB,CG14021-RA,CG14021-RC,CG14021-RD,CG14021-RE,	FBgn0031702,	fusl,	1	.
CG31783-RA	CCGGACAGAGCGAAACAATTCAGGGCATCACGGGTTGGAAGTACGAGATAACGCCGAATACCTTCGACA	69	+	chr2L	18082671	18082740	18082671..18082740	CG31783-RA,CG31783-RB,	FBgn0002939,	ninaD,	1	.
CG8640-RA	TACCATCACCAAGTTCTTGGCCAACCAGGATACGGACGGCACCTACGCCTATGATATCGAGCAGG	65	-	chr3L	7079472	7079537	7079472..7079537	CG8640-RA,	FBgn0035735,	Cpr65Ea,	1	.
CG6315-RA	GGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGAACTAAAGACCACACGCGATCGCATACAAACGCT	69	-	chr2R	9708365	9708434	9708365..9708434	CG6315-RA,CG6315-RB,CG6315-RC,CG6315-RD,	FBgn0000662,	fl(2)d,fl(2)d,fl(2)d,fl(2)d,	1	.
CG8587-RA	TGTTCCGCATGTACAGCACGGTGATTGGAAACGGACGAACTCTCATGGAGGACAGTGTCATCTGTGG	67	+	chr2R	8456054	8456121	8456054..8456121	CG8587-RA,	FBgn0033753,	Cyp301a1,	1	.
CG17199-RA	TGTTCGGTGGATGAACTGGAGCTCTCCTATTGCAATGGCTGGTCAAAGGAAGTGCCCAAATTAGTGGCT	69	-	chr3R	16034561	16034630	16034561..16034630	CG17199-RA,	FBgn0038775,	CG17199,	1	.
CG15184-RA	GGCGGGGATGGCGATGGCGACTTTGTCAACAATAACAAGCAACGTAATTACGCTGGATCCAAGACTGGA	69	+	chr3R	2444868	2444937	2444868..2444937				0	no match
CG1523-RA	CGTACGGCAATGGGGTAAGACTCTTTGGTTACAGTGAGGACTGCTGCGACTATCCGAAATGTCAGGCGT	69	-	chr3R	24643351	24643420	24643351..24643420	CG1523-RA,	FBgn0039601,	CG1523,	1	.
CG14005-RA	GTGCTGGCGTTAATAAAGCAAACGACCATCAAGCTGGAACCATGATCCCGACTACTAGCACCACGTGGT	69	-	chr2L	5800845	5800914	5800845..5800914	CG14005-RA,	FBgn0031739,	CG14005,	1	.
CG33096-RB	GGTTCTGGTTATCCACGGCACCGATGATGAGGTCATTGACTTTTCCCATGGCATCGGAATCTACGAGCG	69	+	chr3R	20924526	20924595	20924526..20924595	CG33096-RC,CG33096-RD,CG33096-RE,	FBgn0053096,	CG33096,	1	.
CG4647-RA	CGCATCACTAACCAGCCAGTGCATATGTAACAACTATTTTTTGTATTTCTTGGGAAATCTGTTAGTTTT	69	+	chrX	12801139	12801208	12801139..12801208	CG4647-RA,	FBgn0030433,	mRpL49,	1	.
CG2668-RA	CCTGGTGGTATCCTTCCTGGTCATTTAGACGGTTCGGTAGTTCCAAATAGTGTGCTAAATGTTGCTGGC	69	-	chr2R	21063335	21063404	21063335..21063404	CG2668-RA,	FBgn0004181,	Peb,	1	.
CG16983-RD	GTGGGTGAGCATTTCTGGAAAGTGCCGTTCTCTATGTTTCGATTCTACTTATCCCTTCATCACCATTTC	69	+	chrX	550649	550718	550649..550718	CG16983-RD,CG16983-RH,	FBgn0025637,	skpA,	1	.
CG8340-RA	ATGCGGACATCACCCTGAGATACGACGCCACTAGTGACGACCTCATTGACGTTATCGAGGGCAAC	65	+	chr2R	7925758	7925823	7925758..7925823	CG8340-RA,	FBgn0010339,	128up,	1	.
CG14503-RA	AGCAGCAACAGCAACATCAGCAGATAAAAGGCAGACAAAAGGCACGAGATGTGAGAGACGTCTAG	65	+	chr2R	14199438	14199503	14199438..14199503	CG14503-RA,	FBgn0040737,	Tango8,	1	.
CG6874-RA	GGAGCCACAGAAAGATAGCCGCCATTTGGAGATTTCCTTGAAGTTTATAATTTTAACATGTTTAATGAT	69	+	chr3L	18815197	18815266	18815197..18815266	CG6874-RA,CG6874-RB,	FBgn0036815,	HipHop,	1	.
CG6778-RB	CCGATCGGGATTGATCCGTGTGCGAGAGTTCACCATGGCAGAGATTGAACATTTCTGTGATCCCGTGCT	69	+	chr3L	15089464	15089533	15089464..15089533	CG6778-RA,CG6778-RB,	FBgn0027088,	Aats-gly,	1	.
CG32475-RA	GGCATCTCAGAGCCTGTGTCTGTAAGACCAAACCCTGTGTACGGATTTGCTGTTTACGGGGAGAAATCT	69	+	chr3L	24421	24490	24421..24490	CG32475-RA,	FBgn0052475,	mthl8,	1	.
CG10928-RA	CCTTCCGCCGTAACCTACTTTTCTCTGCACGCACTCAACCGACGGGGCAATCACTTATGGAAATTGCTT	69	.	.	.	.	.				0	no match
CG32333-RA	CTCCGAACTGCCATACTTCTACATCAGCGACGAGTACCGCGCATTCTCGCCTAACGGCATGCATC	65	+	chr3L	1293236	1293301	1293236..1293301	CG32333-RA,	FBgn0052333,	CG32333,	1	.
CG7926-RA	CGAGGACCCGGACAGTCCAGTGATTCAGGAAGAGATTGTTAACGACTCCGACATACTGCCGCTATTCGG	69	+	chr3R	25859930	25859999	25859930..25859999	CG7926-RA,CG7926-RC,CG7926-RB,CG7926-RD,CG7926-RE,	FBgn0026597,	Axn,	1	.
CG17234-RA	GCGGCCCATTGTTTTTTTGATGAGGAAGGCAATCGGCTAGATGACCAAGGATATCAAGTTCGCGCAGGA	69	+	chr2L	2253270	2253339	2253270..2253339	CG17234-RA,	FBgn0042187,	CG17234,	1	.
CG18085-RA	TGCCTGGTGGGAATCTGCTTCGACACCGAGTCCATATCTCTGATTATGGAGCACATGGAAGCGGG	65	-	chrX	10966681	10966746	10966681..10966746	CG18085-RA,	FBgn0003366,	sev,	1	.
CG7229-RA	TCACTGACGCGGATCGATGTGCCACACAGAAATTATTTGCCAAGCTTCCGACAAACGCCATGAAGGAGA	69	+	chr2R	15148737	15148806	15148737..15148806	CG7229-RA,	FBgn0034423,	CG7229,	1	.
CG8366-RA	CGGAGCACTACACTACGTTTGGGTACAAGCGGATCCGGAATTCGTTAGCAGTTTGCTGAGCATGGCTGA	69	+	chr2R	11843979	11844048	11843979..11844048	CG8366-RA,	FBgn0034054,	CG8366,	1	.
CG2862-RB	AGCCGCCAGTGAAGACACCATTTTCGGCAAGATTTTGCGCAAGGAGATCCCATGCAAATTTATCCACGA	69	+	chr2L	2770321	2770390	2770321..2770390	CG2862-RA,CG2862-RB,	FBgn0031459,	CG2862,	1	.
CG17726-RA	GGCGCACAAGAAGCTAGCTTCCGATATGTGCTCTCACGTAGCCAAACACCCGTTTCGAGTCTTTATCGA	69	+	chr3R	7053328	7053397	7053328..7053397	CG17726-RA,	FBgn0037880,	CG17726,	1	.
CG12806-RA	GGGTGATGGCCAAAAAGAAGTGAAGATACGACGAGCGAAACTATCAGTGGTTTTAGTGCACCTAGCCGA	69	-	chr3R	5654201	5654270	5654201..5654270	CG12806-RA,	FBgn0037766,	Teh1,	1	.
CG31813-RA	ACCACTTCCGGCCTTCCACAAGCAACAGTTCGACTGCAACCAACGATATGTCAGCCAAATATACACTGA	69	+	chr2L	13736145	13736214	13736145..13736214	CG31813-RA,	FBgn0051813,	CG31813,	1	.
CG6207-RB	GCCCTGCTCTAATGGGACTGAATGGCTTGAAAGTTTGGCATAATCAATTTCATCCTAAACGCTGCACGA	69	-	chr3L	11170658	11170727	11170658..11170727	CG6207-RA,CG6207-RC,CG6207-RB,CG6207-RD,CG6207-RE,	FBgn0036144,	GlcAT-P,	1	.
CG18624-RB	ATCTCGCCATCTCCTGTGCTTGTCTTGCAGACCTATGGGCAGTGGGATTGTGGTTCAATTGGCTC	65	-	chrX	7787488	7787553	7787488..7787553	CG18624-RB,	FBgn0029971,	CG18624,	1	.
CG32537-RA	CAGGTCAAACGGAAGGATGGCCAGCTGTGCGAGATCTGTCGCCAGTTGAAGAACAACGAGGTGTC	65	-	chrX	19168325	19168390	19168325..19168390	CG32537-RA,	FBgn0052537,	CG32537,	1	.
CG4925-RA	TCCATCGCGAGCTGAACAAGTACAAAAGGGGAATTACGGAACCGAAGACACCAATCAGCTACTGCAGCA	69	-	chr3L	16342597	16342666	16342597..16342666	CG4925-RA,	FBgn0036614,	CG4925,	1	.
CG7178-RG	GCCGTGGATCGTCGGACCGTTCAGTCTTTTTGTGTCGTTCAGTATCATCCGATTCGTGTGATCGACAGC	69	-	chrX	18010779	18010848	18010779..18010848	CG7178-RA,CG7178-RB,CG7178-RC,CG7178-RD,CG7178-RG,CG7178-RH,CG7178-RI,CG7178-RJ,	FBgn0004028,	wupA,	1	.
CG8151-RA	CGGCGAGAAAGCCAAGTCTAAGCACTTCGAACTGTCCAAAGTGGAGCGTTACCTCAATGGCCCTGTC	67	+	chr2R	10252174	10252241	10252174..10252241	CG8151-RB,CG8151-RC,CG8151-RA,CG8151-RD,	FBgn0033929,	Tfb1,	1	.
CG7187-RA	TGAAGGCGATGACCACACGCAACACCACAACACGCAGCAAATAAGAACGCGGTAGTAGAAATCCTTGAT	69	-	chr3R	14020639	14020708	14020639..14020708	CG7187-RA,CG7187-RB,CG7187-RC,	FBgn0011481,	Ssdp,	1	.
CG14865-RA	GTACGACAAAGTCAAGTCCGTGGACATAGAGAACTGGGAGAACAAACGCGGTCCACGTCCCTGGG	65	-	chr3R	11104002	11104067	11104002..11104067	CG14865-RB,	FBgn0011476,	l(3)neo43,	1	.
CG32184-RA	CTTAGTAGTATGACATCAATATTGGGAGCCAGTTATAGGTTTCTAATCCTAAGATGCCCACTGCC	65	+	chr3L	17535126	17535191	17535126..17535191				0	no match
CG3746-RA	ATCCCGCGGACCAATTAAATCGAAATTAATGCCAAATATTTATCTGTTCTATAATTCTATTACGCGTCT	69	-	chr2R	18536649	18536718	18536649..18536718	CG3746-RA,	FBgn0034755,	CG3746,	1	.
CG4674-RA	CCAGTTACGTCCAAGCTTTGCCTAGACATAGAGCTTCAGGTTTACTTTATAGTGTTATTGAGCATCAGA	69	+	chr3R	6720984	6721053	6720984..6721053	CG4674-RA,	FBgn0037856,	CG4674,	1	.
CG1103-RA	ACCTTTGTTCGGACAGAAAATGACGACACTAGCTTCTGGCTCTGGCTACTTACTACCTTGGGCACCGGT	69	+	chr3R	164770	164839	164770..164839	CG1103-RA,CG1103-RB,	FBgn0037235,	CG1103,	1	.
CG12218-RA	TCCTGAACACCCTCTATGTTCACTGATTGCAAATCAAAGCGCGCAACAATCGTCCATCAGTCGATATGA	69	+	chrX	9064822	9064891	9064822..9064891	CG12218-RA,	FBgn0026206,	mei-P26,	1	.
CG12284-RA	AGTTATCGTAAGCCTACATTGTAATATTAGTTTAGTACAGCACTTCTATGCGTTATTTATAATAAAACT	69	-	chr3L	16031521	16031590	16031521..16031590	CG12284-RB,CG12284-RA,CG12284-RC,	FBgn0260635,	th,	1	.
CG1416-RA	AACTCTGGCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTTCACTGCAGCG	67	+	chr2L	21758920	21758987	21758920..21758987	CG1416-RA,CG1416-RB,CG1416-RC,	FBgn0032961,	CG1416,	1	.
CG31700-RA	GGCACACAAAACAAATCGGTTAAGCTCGAAACGCGTGATATCCAAAAGGATGCCATTAAGGACAACGGT	69	+	chr2L	22069171	22069240	22069171..22069240				0	no match
CG8219-RA	CTAATCGAACTGTACGACATCGAATACTAATCCGAAGCTATCCAGCCAATTATGTATTGCTTCAATCAT	69	+	chr3L	6196670	6196739	6196670..6196739	CG8219-RA,	FBgn0035693,	CG8219,	1	.
CG2412-RA	CGTAGGCAAGACCCAGCTGTTGTACACGTTGGCCCTAAATTTCGTCTGGAAGCATAGCCAGGCAGTATT	69	+	chr2R	5053624	5053693	5053624..5053693	CG2412-RB,	FBgn0033389,	Rad51C,	1	.
CG1688-RA	GAAGCATCGAGTGTTGGCTTCTGGACTTCAGGATGCAACAGCCGTGAATCTCGTGACAGCATCCG	65	-	chr2R	5659396	5659461	5659396..5659461	CG1688-RA,	FBgn0027589,	CG1688,	1	.
CG13983-RA	AGTCATCTCCAGCAGCTATCGATTGACATACCATGAGAACCCTGAGCGTCTTGATTCTCCTCGCCAC	67	-	chr2L	6264418	6264485	6264418..6264485	CG13983-RA,	FBgn0031792,	CG13983,	1	.
CG32394-RA	TCCCAACTCGCAGTTGTACCAGCAGTATCTAAGGCGCGATGACTTTCACACGCGGATGATCTTCAACCA	69	-	chr3L	6723706	6723775	6723706..6723775	CG42799-RC,CG42799-RD,	FBgn0261934,	dikar,	1	.
CG5876-RA	AGTCGCCCGTTTGATTCTAAACTTTTGAACTGAACATATCCTAGCCCTAATGGGTCGATTAACTTGAGA	69	-	chr2L	16297314	16297383	16297314..16297383	CG5876-RA,	FBgn0028375,	heix,	1	.
CG5867-RA	TGATGGCCGGCTTATGTTTGGCAGCGGAAATAGAATTGCCACCAGTTGAGTTCAAGCCGGTTCGAGAAA	69	+	chr2L	13236668	13236737	13236668..13236737	CG5867-RA,	FBgn0027586,	CG5867,	1	.
CG7755-RA	TGCCGTTTTCAAACCGCTCCAGACGAAACTATCGCTGACCAATTATGCCAATCTAAGTGCATACGGCAT	69	-	chr2R	12169416	12169485	12169416..12169485	CG7755-RA,	FBgn0034105,	CG7755,	1	.
CG8768-RA	CTTCATCGCCCGTGTATCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGACCAGAGCG	65	-	chr2R	8579160	8579225	8579160..8579225	CG8768-RA,	FBgn0033769,	CG8768,	1	.
CG15636-RA	AGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCACTCCGAGTCCCAGGAAGAAACGAT	69	-	chr2L	4577796	4577865	4577796..4577865	CG15636-RA,	FBgn0031613,	HP6,	1	.
CG17534-RA	TGCGCTTATCTGGTTAGACGCTATGCCAAGAGTGATGACCTGTATCCCAAGGATTACTTCAAACGCGCA	69	+	chr2R	14296808	14296877	14296808..14296877	CG17534-RA,	FBgn0063491,	GstE9,	1	.
CG6836-RA	CCAACTGGTGGTGATGCTTTGCAAACTGCAGTACCTGGTACTCTATGATCAGCTGGACGGCATCAAAAT	69	+	chr3L	18948105	18948174	18948105..18948174	CG6836-RA,	FBgn0036834,	CG6836,	1	.
CG13882-RA	CCGAAGCCTGGAAAAATCCAATCCGTCATGGACCTTCCTTTGTAGCGGAATTGCCAGCATTTGCCAACC	69	+	chr3L	290977	291046	290977..291046	CG42378-RI,	FBgn0259743,	RhoGEF3,	1	.
CG4546-RA	GGATGGCGTTGTGACCCTGATTAACGCAGAGGAAGAGCTCGAAATATCCGGACAGGAGGGTTAGAAACA	69	+	chr3R	11673941	11674010	11673941..11674010	CG4546-RA,	FBgn0038373,	CG4546,	1	.
CG15881-RB	CTGAGTTTGCGGTACTCAAGGGACCAGGTCTGTGCATAAACATTGGACTCCTCGACCCCACTTGC	65	+	chr3L	19798567	19798632	19798567..19798632	CG15881-RB,CG34116-RA	FBgn0036909,FBgn0083952	CG15881,CG34116	2	.
CG31212-RA	GGCCAAACTGCAGTCTTCTTCACCAATTCCAGCGGCTACTCAAAGCGAACGAAAAAGACGACATCCCCA	69	-	chr3R	15209851	15209920	15209851..15209920	CG31212-RA,	FBgn0086613,	Ino80,	1	.
CG6272-RA	AGATCGAGACGAGTGAAAAACATATATCTACGCTTAGAGATCTGATCATTCAGGGTGAGAAAACGGAGG	69	-	chr3L	11090806	11090875	11090806..11090875	CG6272-RA,	FBgn0036126,	CG6272,	1	.
CG13946-RA	GCACCACTGACGTTTCCTCATCATAGGAAGCTAATCAAAAACTCTTGTATTAATCGATCCTGTATATAA	69	+	chr2L	776815	776884	776815..776884	CG13946-RA,	FBgn0040725,	CG13946,	1	.
CG8483-RA	ACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTTAACGAGGTGCAGAAGTACTCCTTCGGGGAC	65	-	chr3R	9035923	9035988	9035923..9035988	CG8483-RA,	FBgn0038126,	CG8483,	1	.
CG8315-RA	TGCAGTCCTACGTGCTGATGCAGGGACACAAAGACATAGTTGTGGACACGGTGAAGAATGCGTGCG	66	-	chr2R	11879132	11879198	11879132..11879198	CG8315-RA,	FBgn0034058,	CG8315,	1	.
CG17090-RB	ACATTAAGCAAAGTCCAAGTCCCCTAACTCATTGCCACTTCTTAGCTTATTTTTTTTCGGGGTCCCGCG	69	+	chr3L	574681	574750	574681..574750	CG17090-RB,CG17090-RA,	FBgn0035142,	hipk,	1	.
CG7144-RA	CCACCAAATACGGCAACCTTTACGGCTTAGGCAGGGATGTGCACACTTTGCTTCGTGGAACCATACGTT	69	-	chr2L	7792471	7792540	7792471..7792540	CG7144-RA,	FBgn0025687,	LKR,	1	.
CG10303-RA	CTGATCCTGTCCAAAATTGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGAAGCTCATGGACAACGCC	69	-	chr3R	2045949	2046018	2045949..2046018	CG10303-RA,	FBgn0037412,	Osi4,	1	.
CG10981-RA	CGCGAATGCATCGAAACAGCCATCAGAGCTACGCACAAGTGCCCAATATGCAACAAGAAGCTGACCGC	68	+	chr3R	1651864	1651932	1651864..1651932	CG10981-RA,CG10981-RB,	FBgn0037384,	dgrn,	1	.
CG3682-RB	AGGGGAATCACAGAAAATTTCGTACCTTGGTGACCAGCTATATAGGTAAACAAACGAATGGTCGATGTC	69	+	chr2R	18765282	18765351	18765282..18765351				0	no match
CG4481-RA	GGTGAGCGTCATCTTCAGTTACATCGGCGTTAGCATCGTGCTATTCTTTGTGTCGCGCTTCTCGC	65	+	chr3L	9274017	9274082	9274017..9274082	CG42509-RA,CG4481-RA,	FBgn0260235,FBgn0028431,	CG42509,Glu-RIB,	2	.
CG3248-RA	AGCGCAAACAGCTCTTTTCGATGGGTAGCAATAATGCGCTGTTGGAATTCCTTCTGGAGGGCACG	65	-	chr2L	3454715	3454780	3454715..3454780	CG3248-RA,	FBgn0031536,	Cog3,	1	.
CG10849-RA	CGCTCCATCTTCCCCTTCGTCCTGTAGGTTGGATGTGGGTATCCCCATGACGCATTCGCTGTATTACC	68	+	chr3L	3904861	3904929	3904861..3904929	CG10849-RA,	FBgn0035471,	Sc2,	1	.
CG7798-RA	TGAGCGACGATATCCGGTATTCCATTGCCTGTGCGAAGTACATCAGGAAACAGCAAGGATTCTCCGCCT	69	-	chr2R	12109768	12109837	12109768..12109837	CG7798-RA,	FBgn0034092,	CG7798,	1	.
CG4680-RA	CGCCGGCAAGAATCATCCGATGTTCAAGAGCATTGGCAACCCCACCTTTAAGTCCAGCTTCAGCTACAA	69	+	chr3L	16388906	16388975	16388906..16388975	CG4680-RA,	FBgn0036627,	CG4680,	1	.
CG4869-RA	CGGCAATGGCGAGTAAAGTCCTAGAAACTATCACAACTGTAGCTGTTTTCTGTATACTATTTTGTAAAT	69	-	chr3R	23792774	23792843	23792774..23792843	CG4869-RA,CG4869-RB,	FBgn0003890,	betaTub97EF,	1	.
CG32488-RA	CCGATCCGATCGGGAAGCTATGTTCAAGCATACTTTCACAGATTTGACCAAGTTGCCGAAACAACGGGT	69	-	chr3L	3015998	3016067	3015998..3016067	CG32488-RA,	FBgn0052488,	CG32488,	1	.
CG9166-RA	CGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGGAAGCCACGGAGATTTTTGATGTGGAAGAG	67	+	chr3L	1351331	1351398	1351331..1351398	CG9166-RA,	FBgn0029514,	312,	1	.
CG8814-RA	GGAGAGCCTGCAGGAGATCATTGAGACCATGTCGTTCACGGAGAATGTGCAGAACTTTGTGGGCAGC	67	+	chr2L	2875632	2875699	2875632..2875699	CG8814-RA,	FBgn0031478,	CG8814,	1	.
CG15138-RA	CCCGTCCAAGGTACGTCTTACCGGGAATTATTTGTGACCAAAATCTTATCGCTCTTGTTCGTCCAACCA	69	-	chr2L	17190237	17190306	17190237..17190306	CG15138-RA,	FBgn0032629,	beat-IIIc,	1	.
CG17742-RA	TGAGGTCGATGTGGATACGATTAAGAAGCTAAAGCTGGGTCAGAGGTCATCGCTCTGGTCCCGACCCTC	69	-	chr3L	7154715	7154784	7154715..7154784	CG42256-RH,CG42256-RJ,	FBgn0263218,	Dscam2,	1	.
CG8111-RA	TTCATTGTTGAGCCAAATTGATCGCATTTGCCATTTATCCCTCGGCCAATAAAAACTTAACACTT	65	-	chr3L	7906769	7906834	7906769..7906834	CG8111-RA,CG8281-RA	FBgn0035825,FBgn0035824	CG8111,CG8281	2	.
CG2577-RA	CGATTTCGGGCTATCCAAGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAGCG	69	+	chrX	12267744	12267813	12267744..12267813	CG2577-RA,	FBgn0030384,	CG2577,	1	.
CG1561-RB	GCAAGAAGTTGCAGTCAATATTTATAGTAGTCACTAAGTCGCTAATCAATAAAGGCTTGAACCCAAATG	69	-	chrX	11475984	11476053	11475984..11476053	CG1561-RA,CG1561-RB,	FBgn0030317,	CG1561,	1	.
CG4602-RA	CCGCTCCCGTACTCCCGAAACTCGCAAACTCAAATCCATCTCTGAGGACACTGAGGTTAAGAGCTCACG	69	+	chr2L	9914441	9914510	9914441..9914510	CG4602-RA,	FBgn0024285,	Srp54,	1	.
CG9063-RA	CGGCTGTACTCGCTACCGACATCAGAGGACGACCTAGCCGTGGATATTCTGCCTCAGAAGCTGTC	65	-	chr3L	22251821	22251886	22251821..22251886	CG9063-RA,	FBgn0028500,	CG9063,	1	.
CG8949-RA	TCGGTTGGTTCGGTGTCAGATGGGACCAATCACGCCTACAATTCGGTCAATAACTCGGTCTCCGG	65	-	chrX	16965551	16965616	16965551..16965616	CG8949-RA,CG8949-RC,CG8949-RD,	FBgn0030812,	CG8949,	1	.
CG4914-RA	ACCCGAGTCACGAAATATCTGGACTGGATTGTGGAGAACTCGCGAGACGGTTGTTTCTGCGATGAGGAT	69	-	chr3L	14667786	14667855	14667786..14667855	CG4914-RA,	FBgn0036436,	CG4914,	1	.
CG10014-RA	TTGATGGGCCAGGTTCTAGAGGACTGTTTCCGTAACTTCCTCGAGAAACGACGCTGCGAGATGCG	65	+	chr3R	8048547	8048612	8048547..8048612	CG10014-RA,	FBgn0038000,	CG10014,	1	.
CG8370-RA	CAGAAAGCCAGAGCGAAAACAGCGCCAGAAGTTGAATTTTGGGCAGACCACGAATAGCACGTCGC	65	+	chr2R	11893415	11893480	11893415..11893480	CG8370-RA,	FBgn0034060,	CG8370,	1	.
CG4374-RA	TACATCGGCCGGTCAATTGCAACCACCGCAACCTTTGAAACCGGAAGTCAGTACCTCCACATCAC	65	-	chr3R	19236538	19236603	19236538..19236603	CG4374-RB,	FBgn0039078,	CG4374,	1	.
CG33103-RA	AGTGCGTTGACAATCCGTACTTCGCTAACTGCAAGCTTATCGTCAAGGGCAGATACTGTTCCAATCCGT	69	-	chr3R	24346930	24346999	24346930..24346999	CG33103-RC,CG33103-RE,CG33103-RF,CG33103-RG,	FBgn0003137,	Ppn,	1	.
CG9028-RA	GCGTTCCTTGTCCAGGCCTCGCTACATCAGTGGTCTTCAGAAGTTTACTACGGTGAGCAAGGCAA	65	+	chr3L	13963878	13963943	13963878..13963943	CG9028-RA,	FBgn0036389,	ssp2,	1	.
CG10944-RA	GCGCGGTGATCAAACAAATTGCAAGCGAAAATGTCCAGTGATTGCGTTAAAATAAGTGGATGATATTAT	69	-	chrX	7795124	7795193	7795124..7795193	CR34593-RA,CG10944-RA,	FBgn0082924,FBgn0261592,	snoRNA:Or-aca2,RpS6,	2	.
CG31120-RA	GGCGGATGCCTAGAGATCTTCGGTAGCGACGATCAGTGCTTTCCACAGTTTCCAGTGCAGCGAAAGATC	69	-	chr3R	20742578	20742647	20742578..20742647	CG31120-RA,	FBgn0051120,	CG31120,	1	.
CG8323-RA	CGCGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGATCAGAGGGCGTTTATGGT	69	+	chr2R	10053995	10054064	10053995..10054064	CG8323-RA,	FBgn0033903,	CG8323,	1	.
CG4952-RE	ACGATAAGCTGAATACCCGTGTAGGCAGAGTTGGCATACCTAGCATTTAACTTCCCCGAAAAGAAACCA	69	-	chr2L	16467244	16467313	16467244..16467313	CG4952-RE,CG4952-RD,CG4952-RA,CG4952-RB,CG4952-RF,CG4952-RG,CG4952-RC,	FBgn0005677,	dac,	1	.
CG5780-RA	GGCACCTCACGATCTGCTGTTTTGAAGGAGGCCAATTCCGATTTGCTTTCCCAGTACGCCTTTTCAGCT	69	-	chr2L	12694175	12694244	12694175..12694244	CG5780-RB,	FBgn0032446,	CG5780,	1	.
CG15093-RB	TGTACGACCTGATGAAGAAGGAGAAGTTCAGCGTTTAGGTTACTCACAGACTACAGGTTGTGGTGGCCA	69	-	chr2R	14663323	14663392	14663323..14663392	CG15093-RB,CG15093-RA,CG15093-RE,	FBgn0034390,	CG15093,	1	.
CG32160-RA	CATATCTCTCTTGGGATCTCGAGTGGTACTGCTCTGGGGGTAATGTACGCCTTATGGCCAGCAGG	65	+	chr3L	16303608	16303673	16303608..16303673	CG32160-RA,	FBgn0052160,	CG32160,	1	.
CG1104-RA	GCGTCCGGAAAATTCGTTTCTGCCATACTGCAGCATATTCGCGGCTCACTAAACGAGGACCAGAATGCT	69	-	chr3R	2897656	2897725	2897656..2897725	CG1104-RA,CG1104-RB,CG1104-RC,	FBgn0037467,	CG1104,	1	.
CG17629-RD	TTGAGCGACAGGGAAAAGATGCAGCCGTCAACCCAAATTTTCGAATATGGATCACAACAGAGCCGCACC	69	+	chrYHet	64914	64983	64914..64983	CG17629-RA,	FBgn0001314,	kl-3,	1	.
CG17252-RA	ACAGCACCGGACGACGAGAGAGTATCTGCCTCAGCCCAAGACTTAAGCACTTCCCTTACACTAGCAGTT	69	+	chrX	9251791	9251860	9251791..9251860	CG17252-RA,	FBgn0026149,	BCL7-like,	1	.
CG41098-RA	AATCGACATAGTTCGGATGCTGCTCGGCAAAGACAGTCGCAATGGTGATGTTCGAAGCTGCACCG	65	.	.	.	.	.				0	no match
CG33062-RA	TTTATGGTGGCTGAGTCCTTAATATTTATTGAAAAAGGCGACATTCCATTTTATTTCCAAGTAAGAAAG	69	-	chr3L	19434892	19434961	19434892..19434961	CG33062-RA,CG33062-RB,	FBgn0053062,	CG33062,	1	.
CG8239-RA	CTGCCTGGTGTACTCCCTGTCCCGACTCTACGATATACCGCTGAATGAGGAGCTGACGACGGTGG	65	+	chrX	15644163	15644228	15644163..15644228	CG8239-RA,	FBgn0030683,	CG8239,	1	.
CG17041-RB	GCAGAAGCTGTCGCATCCCTACACCTGCACTGAGAAAAAATGCCAGTCAAAAGTTTTTATTACCCACCA	69	+	chr2R	9151473	9151542	9151473..9151542	CG42319-RA,CG42319-RB,CG42319-RC,CG42319-RD,	FBgn0259219,	CG42319,	1	.
CG6215-RA	CCGCCACGAGAACAGCGTTCACAATGTATCCGATTTCATCTGCGTGGAGTGCAACATGTCCTTCGCTAA	69	+	chr3L	15810963	15811032	15810963..15811032	CG6215-RA,	FBgn0015025,	CkIIalpha-i1,	1	.
CG7851-RA	ATGGAGTGGACATTTGACAAACATCTCCCCGAGTGCTCTACTGCTGAGGAGTGTTGGATTCGAGCGCAT	69	+	chr2L	8305146	8305215	8305146..8305215	CG7851-RA,	FBgn0032013,	Scgalpha,	1	.
CG12323-RA	GGTGGATCGTACATTGGCTCCCAGTCGATGAAGAAGATCGTGGAGATCAATCAGTTCATGCTGGGCACC	69	+	chr2R	6707921	6707990	6707921..6707990	CG12323-RB,CG12323-RA,	FBgn0029134,	Prosbeta5,	1	.
CG12340-RA	GCGCCAATGCTTATGAATCAGTCCAGCGTTCAACGTCTGCAGTCCTCACCGCCTATAGCTCAAAGGA	67	-	chr2R	6689955	6690022	6689955..6690022	CG12340-RA,	FBgn0027499,	wde,	1	.
CG8376-RA	GGGAGCGTGTCACTTCCTTTCGGTATGAACATAGGTGAGGAAAAGTTTGAGGCCAATCTTACGGCGCAC	69	-	chr2R	1594434	1594503	1594434..1594503	CG8376-RA,CG8376-RB,CG8376-RD,	FBgn0000099,	ap,	1	.
CG32446-RA	ACCACCTACGTCGGGGTGAAGAAATGAGACGAGTTCCTCAGCAAGTTTCAGAAGTACGGCAGGCTGAAA	69	+	chr3L	21635180	21635249	21635180..21635249	CG32446-RA,	FBgn0052446,	Atox1,	1	.
CG31820-RA	GAAAACGACGTGAAATTTTTTTGTGCTTTTGGTTTGAACCACATTTTCACTTACACAATGGTTCGAGCT	69	-	chr2L	16005809	16005878	16005809..16005878	CG31820-RA,CG31820-RB,	FBgn0051820,	CG31820,	1	.
CG10345-RA	AGCCCATGCTGGAAATGAGCGTTCACGACTACATGTGGGGCTATGAGGATCACCTGGTAGAGCTG	65	-	chr3R	12424334	12424399	12424334..12424399	CG10345-RA,	FBgn0027562,	CG10345,	1	.
CG4634-RA	GCACGAAATCACACGAGATGGCTCTGTACGAAACCGTTGAGAAGGGCGCTAAGAATTCGCCGAGCTACA	69	-	chr2R	20448387	20448456	20448387..20448456	CG4634-RA,CG4634-RB,CG4634-RC,	FBgn0016687,	Nurf-38,	1	.
CG11227-RB	GGCGATGACTGTACTCAGCCGACGACTAGATATCACTAGGAGCTCCATCATGAAGGTCCGCGGTCTCC	68	-	chrX	20802304	20802372	20802304..20802372	CG11227-RA,CG11227-RB,	FBgn0031139,	CG11227,	1	.
CG12263-RA	GTCACATCCCGGTGGTCTACGGACTAGCAACCGTTTACTCCTCCATTGTCATTGCATTTGGCGTTTTCT	69	+	chr2R	14316806	14316875	14316806..14316875	CG12263-RA,	FBgn0034346,	CG12263,	1	.
CG7884-RA	TCGCAACTCACCTCGTCTAGACATGTAATCGAGCTTCTCTCTTGTCTTCACCACACACTGAACACTGAT	69	+	chrX	19129171	19129240	19129171..19129240	CG7884-RA,	FBgn0031001,	CG7884,	1	.
CG2259-RA	GCCAGCCACGATATCCTCCAGGAAGTCACCATGCTCTCGTCATCGTTTCGATGGAACTTCGAGTTCCTC	69	-	chrX	7997100	7997169	7997100..7997169	CG2259-RA,CG2259-RB,	FBgn0040319,	Gclc,	1	.
CG8425-RA	GCCGGCGATGGTCTCAAGTACTGGGATGTGGATCACATGACCAATTTCCGTCCAGTGGTCGAGGAG	66	+	chr2R	12009055	12009121	12009055..12009121	CG8425-RA,CG8425-RB,	FBgn0010052,	Jhe,	1	.
CG12225-RA	CAGGTTTGTGACGACGGAAGAATGAAAAATAAATTTCAATTTTTTCTGACCAGAAATATACCGCCAGCT	69	+	chrX	6168870	6168939	6168870..6168939	CG12225-RA,	FBgn0028982,	Spt6,	1	.
CG15561-RA	TCCGAGGCATGTGAGGTTTCCCAACTGGAAGAGCCCATAAAATCCAAGAAAAAGAAGAAAGACAAGGCT	69	-	chr3R	27040844	27040913	27040844..27040913	CG15561-RA,	FBgn0039829,	CG15561,	1	.
CG7840-RA	GCCCAATAGCATACGCCAGTCCTTTCGGTATGGCAAGCACAGTTTCAAGGGTGAAACGGATCCTTTGGT	69	+	chr2L	8305830	8305899	8305830..8305899	CG7840-RA,	FBgn0032014,	CG7840,	1	.
CG18341-RA	CCATTGTTTCCGACAAGAATTGCTCAAAAATTCACCACCTTCAGGATCACATATACTGTTGTGGC	65	+	chrX	5703309	5703445	5703309..5703364,5703435..5703445	CG18341-RA,	FBgn0029812,	Prosbeta2R1,	1	.
CG17141-RA	TGCGGCAAATTCAGCAAAAACTACGAAATGTAGACTGCATAGTCGAGATTCACGATGCACGCATCCCAT	69	-	chr3R	18573088	18573157	18573088..18573157	CG17141-RA,	FBgn0039020,	CG17141,	1	.
CG31741-RA	GCCCCAGGTGACCTACTTCGGCAAACGTACCTGGCATTTTCTACCGGAAAAGTCAAATGGATCGCTTGA	69	+	chr2L	18084593	18084662	18084593..18084662	CG31741-RA,	FBgn0051741,	CG31741,	1	.
CG3781-RA	GGCGGGATCCACACTGTCTCAATCTGAGCGTCATTTTCGGCTTCATTCTCAATGTACCGGCTCAGATGA	69	+	chrX	6155647	6155716	6155647..6155716	CG3781-RA,	FBgn0029853,	CG3781,	1	.
CG3734-RA	AGCTCGAGTGACACTGCTGAAATGAGAGCTTCCAAAGAACGTATTGCCGAACTGGTACGCGAGTGGGTT	69	+	chr3R	15215449	15215518	15215449..15215518	CG3734-RA,	FBgn0038700,	CG3734,	1	.
CG13895-RA	CGGGATCTCATGCAACTCGATGGTTTTGTGCCGAACAAACCGTGGATCAATCACTTCAAGGCCGCCTAT	69	-	chr3L	707196	707265	707196..707265	CG13895-RA,	FBgn0035158,	CG13895,	1	.
CG14773-RA	AAGCCGGCCCAAAAGCAGCTGCCAAACAAGAGGCTGTATTTTCATTTGTCCAAGTGCAACAGCAG	65	+	chrX	1322087	1322152	1322087..1322152				0	no match
CG2677-RA	GCGAAGCCAAGGTATACAGTCCCATGTTCGACTACGTGCCTCCGGAACTGGTCACCCTTTTCATATCCA	69	+	chrX	2599885	2599954	2599885..2599954	CG2677-RA,	FBgn0024996,	eIF2B-beta,	1	.
CG8900-RB	GGCAGCTGACCTCCTCCAACTTGGACTCGAAGCTGCGTGACGATCTGGAGCGTCTGAAGAAGATC	65	+	chr2R	16152094	16152159	16152094..16152159	CG8900-RB,CG8900-RA,	FBgn0010411,	RpS18,	1	.
CG18130-RA	GACAAGATCGTGCTGAAGGTCAACAAGGTCCAGTCCAACATGATGTTATCCCTGGTCTCGTACGG	65	-	chrX	11884869	11884934	11884869..11884934	CG18130-RA,CG18130-RB,	FBgn0030359,	CG18130,	1	.
CG1031-RA	GCAACTCCTTTGAAGGTCTGTTCTCCTACCAGAGTACCCTGCACGACGAGGAACACATGCTGAGTGCTT	69	-	chr3R	3372280	3372349	3372280..3372349	CG1031-RA,	FBgn0015568,	alpha-Est1,	1	.
CG15148-RA	CCAACTAGCGGTCAACTGCAGGACTACTACGCTGCATTGGAGAAACTTCCTGACACAGATGAGCCCAGT	69	-	chr2L	17964922	17964991	17964922..17964991	CG15148-RD,	FBgn0023096,	btv,	1	.
CG13388-RA	GCCTCTCAATTCCAGATCGGGTTAAGTCCCCAAAAACACATCCATCACCCATCAAGCACACACCATCCA	69	+	chr2L	8430713	8430782	8430713..8430782	CG13388-RA,CG13388-RC,CG13388-RB,CG13388-RD,	FBgn0027932,	Akap200,	1	.
CG7715-RA	AGTTCAATGCCCATCTTTCAGCAAGCGGAATTTCATTCACTACTCTAAATAGCAATCTAAAGTAATTAA	69	-	chr3R	14553307	14553376	14553307..14553376	CG7715-RA,	FBgn0038646,	CG7715,	1	.
CG16902-RA	TCCGGCGAATCAAGCTCAAGATGGAGGAGTACGTCTGCCTGAAGGTTTACATACTGCTAAACAAAGGTA	69	+	chrX	1896126	1896195	1896126..1896195				0	no match
CG4154-RC	AGTTTCTCGAGGATCTGCAAATCTCACGTTCCTCCCTGGCAAACAATAACAACAATCAGAGCCCC	65	+	chr3R	11014756	11014821	11014756..11014821	CG4154-RD,CG4154-RA,CG4154-RC,CG4154-RE,	FBgn0038295,	Gyc88E,	1	.
CG1522-RF	TAATGCGTTTCGTATGCTGAAATTAGCTCCTCGCAAACTTTCCGATCAGTTGAAAGAACTCGATGTCCA	69	-	chrX	11828172	11828241	11828172..11828241	CG43368-RG,CG43368-RH,CG43368-RI,CG43368-RJ,CG43368-RC,CG43368-RA,CG43368-RD,CG43368-RF,CG43368-RB,CG43368-RE,CG43368-RL,CG43368-RM,CG43368-RN,CG43368-RO,	FBgn0263111,	cac,	1	.
CG16991-RB	ACCTGACGACTACAAGTTGGGCGATCTGAATATCCCAAAATCCTGTTACAAGAATGGCAGTGAAAGGGA	69	+	chr3L	7461042	7461111	7461042..7461111	CG42660-RA,CG42661-RA,CG16991-RA,CG16991-RD,CG16991-RC,	FBgn0261536,FBgn0261537,FBgn0035786,	CG42660,CG42661,Tsp66A,	3	.
CG17145-RA	CGTTGCGACGGTCGGACTGCTAGTTTTGTCGTTAGTGCCACCAAGGGCTGTCGCAACTATCTGAG	65	+	chr3L	20215840	20215905	20215840..20215905	CG17145-RA,	FBgn0036953,	CG17145,	1	.
CG8453-RA	TAACCTGTTCTTCGTCAGGGATGCCCATTGGAAGGGAATTCGCACCAAGCTGACTCCCGTTTTCA	65	+	chr2R	8074301	8074366	8074301..8074366	CG8453-RA,	FBgn0025454,	Cyp6g1,	1	.
CG4192-RA	CCCGCAAACTAAAGACCAGTGGAAAGTACTTCCGCAACTCCTCGGATAGCCAATCACCCCTGCTG	65	+	chr2L	15582238	15582303	15582238..15582303	CG4192-RA,CG4192-RB,	FBgn0028370,	kek3,	1	.
CG3798-RA	CCGACGAACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACC	69	-	chr2R	8765595	8765664	8765595..8765664	CG3798-RB,CG3798-RD,CG3798-RA,CG3798-RC,CG3798-RF,CG3798-RE,	FBgn0013305,	Nmda1,	1	.
CG31264-RA	TCGGTGGGCACCTCTGAGCAATTGTCGGTGCAGTTGGATGTGAAATATCCCCCCAAAATTATTTCAGCT	69	-	chr3R	4223273	4223418	4223273..4223296,4223372..4223418	CG31369-RB,	FBgn0262729,	CG31369,	1	.
CG12914-RA	TCGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTATCCATCCAGCTCTACGGAT	69	+	chr2R	6135836	6135905	6135836..6135905	CG12914-RA,	FBgn0033499,	CG12914,	1	.
CG5836-RA	AGGGCCATAATGATCTCCGCAGAATGCAGTTGCGAGAACTGGCTCAGCTGAATGGAACACTTCGAGAGA	69	+	chr3R	13369755	13369824	13369755..13369824	CG5836-RA,	FBgn0025571,	SF1,	1	.
CG2720-RA	TCTGGGCCTCAAGGACTGCGACACTTGCATCAAGCTAGACGAAAAGTTCATAAAGGGCTACATCCGCAA	69	+	chr2L	296493	296562	296493..296562	CG2720-RA,	FBgn0024352,	Hop,	1	.
CG10171-RB	GCCCGTGCGCTAATGCTGTTTTGGATTAGGATTAGCTGCATTCAATAGCTAAAAATGTCAAAGGCTGCC	69	-	chr3L	13379758	13379827	13379758..13379827	CG10171-RA,CG10171-RB,	FBgn0036353,	CG10171,	1	.
CG1836-RB	GAAGTAGCTACTTCAGCACAAAGATCAGCCGCGGGTACAAGTGCAGCACATCAAAGCGGTAGCGC	65	+	chr4	330496	330561	330496..330561	CG1836-RB,CG1836-RA,	FBgn0026777,	Rad23,	1	.
CG3304-RC	CCAATCGAAACAATTGTGAGCAATGTTTTCGTTCTTTTGTATAACTCCTCCCAACTCTTTACCCTTTTT	69	-	chr2L	3359145	3359214	3359145..3359214	CG34394-RD,CG34394-RA,CG34394-RC,CG34394-RE,CG34394-RF,CG34394-RG,	FBgn0085423,	CG34394,	1	.
CG9863-RA	CCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGATCGATGATAAGTTCGAACCGAGCAACTGCCG	66	+	chr2R	19234726	19234792	19234726..19234792	CG9863-RB,	FBgn0034846,	CG9863,	1	.
CG2533-RA	CCCCAAGAGCCAAAATTCCACTTTCTTTGACCTTCCCTTAGACTCCGAATGAATCTCATTCACCCGAGG	69	-	chrX	11497352	11497421	11497352..11497421	CG2533-RA,	FBgn0030319,	CG2533,	1	.
CG13645-RA	TGGATCTTTTAAAAGACGCTCAAAATCGAAGAAAATGTCAGCATTCATCGAGGAAACAAAAAGCCTG	67	+	chr3R	20771038	20771105	20771038..20771105	CG13645-RA,CG13645-RB,	FBgn0039254,	Nmnat,	1	.
CG32435-RA	CGAAGCTGTCAGTGCTAAATCCCAGCAAGGTTAGGCTCCTCAACGTGTACATCGAGAAGCAGCGGAACT	69	+	chr3L	21175583	21175652	21175583..21175652	CG32435-RB,CG32435-RA,CG32435-RC,	FBgn0021760,	chb,	1	.
CG12902-RA	TGCAGCGTTAGCCAGGGAAGACAAAATGCCATTCGATAAGTTTGTCCGCCGATGAATGGAATGGAGAGG	69	-	chr2R	6242370	6242439	6242370..6242439	CG43397-RA,CG43397-RB,CG12902-RA,CG12902-RB,CG12902-RC,	FBgn0263271,FBgn0033512,	CG43397,CG12902,	2	.
CG6330-RA	TCCGATGGAACCGTCAAATTGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTG	69	-	chr3R	22777547	22777616	22777547..22777616	CG6330-RB,CG6330-RA,	FBgn0039464,	CG6330,	1	.
CG6734-RA	GCGATTCGGGCATTCATCTGTGGGATCCGTTTATAGGAAGACCGCTTTCCGTACTGGATGCTCCTCGTC	69	-	chr2L	12015375	12015444	12015375..12015444	CG6734-RA,	FBgn0032395,	CG6734,	1	.
CG16952-RC	GGCAAGGACAACCATCGCCAACATCACATCCACAACATTCCGGGACATACAATTCTGGACCACCAAGGT	69	+	chrX	15769367	15769436	15769367..15769436	CG16952-RA,CG16952-RB,CG16952-RC,CG16952-RD,	FBgn0030701,	CG16952,	1	.
CG4098-RA	GCGACACATTCTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCTTTCACGGT	65	-	chr3L	16601965	16602030	16601965..16602030	CG4098-RA,	FBgn0036648,	CG4098,	1	.
CG32441-RA	TGCACCCAGGAAGACGTGAATAAGCTACTGGAAACGCAATTCAGCACCGATGTCCTCATCCGCCA	65	+	chr3L	21568530	21568595	21568530..21568595	CG32441-RC,CG32441-RD,	FBgn0052441,	CG32441,	1	.
CG14041-RB	CAGTGGCTCCTCTGGGACGTGTGCATTTCTCGTAGTAGCTTTAGAGCGTGCTAAGTTTAAGCATTCGGA	69	+	chr2L	5040223	5040292	5040223..5040292	CG14041-RA,CG14041-RB,CG14042-RA,CG14042-RB,	FBgn0260470,FBgn0260451,	SP555,CG14042,	2	.
CG13090-RA	TGTCCGTGGAGGACTACCAACAGAAGATCCAGGCTCAACCACATTTGCTTATCGATGTGCGGCCAAC	67	+	chr2L	8518699	8518766	8518699..8518766	CG13090-RA,	FBgn0032054,	CG13090,	1	.
CG12179-RA	GCTAGGCTTTGTATTTTTCTATAGCTTTTAATTGATCACAATTGTTTAAATCCCGAAGCACGTATGGTT	69	-	chrX	4525549	4525618	4525549..4525618	CG12179-RC,CG12179-RD,	FBgn0025388,	CG12179,	1	.
CG2371-RC	TCCAGTGCCAATTTTATTGTTGATTCACACAAAACTCTGTGCAAAAAGATGGACCTAAAAGTATGCAAT	69	-	chrX	11571609	11571678	11571609..11571678	CG2371-RA,CG2371-RB,CG2371-RC,	FBgn0030323,	CG2371,	1	.
CG8157-RA	ACCTGCTGTTTTCGTGAACCAAATATTAAGGAGACCACGGATCCTGGAGATAACTCGCAAACGAA	65	-	chr2R	11213337	11213402	11213337..11213402	CG8157-RA,	FBgn0034010,	CG8157,	1	.
CG11840-RA	AGTAGAGCCGGGAGGACGCAACATCCGAACAACATCCCCACTCGTTCCATCGTAAATGTCTTCTGCAG	68	-	chr2L	543177	543245	543177..543245	CG11840-RA,	FBgn0031260,	Spp,	1	.
CG10318-RA	CCCCGATCTGCAACTACGAACTCAACAAGCCCATTGTCAAGATCGACTACAGCCACGTGCAAATGCCG	68	+	chr2R	17558604	17558672	17558604..17558672	CG10318-RA,CG10318-RB,	FBgn0034650,	NC2alpha,	1	.
CG7653-RA	TCCTTGGTGCCTCTTTCATCGAACGCCAGTTTAAATGCAGAGACGCAACTGTATCAGAAGGCCACCTCT	69	-	chr2L	15878643	15878712	15878643..15878712	CG7653-RB,	FBgn0028935,	CG7653,	1	.
CG10226-RA	GGCAAATCCCTTATGTTCTTCGGCTACGCAGTGACCTTGACATATGGTGGACACATGTGTGCTGATGGC	69	-	chr3L	6228753	6228822	6228753..6228822	CG10226-RA,	FBgn0035695,	CG10226,	1	.
CG13226-RA	GCTACGGCTATGGGCAGAACTACTACAGACCCAGCTACTACAATTATGGTGGATACCAGAGACCGCAGC	69	+	chr2R	7132119	7132188	7132119..7132188	CG13226-RA,	FBgn0033594,	CG13226,	1	.
CG8269-RA	TTGATTGTTGTAAAAAAGGATTTTTGAAGGTTTATAATTATTTCGTTGCCAAAGGATTCCAAACACCGC	69	+	chr2R	4779370	4779439	4779370..4779439	CG8269-RA,	FBgn0021825,	Dmn,	1	.
CG12063-RA	TGCAGTCTGGGACAATATGCAGAAGCGAGCGTTACACAAGCGGTAAGAACGTCAACGCCAGTGAATGG	68	+	chr3R	27331994	27332062	27331994..27332062	CG12063-RA,	FBgn0039851,	mey,	1	.
CG7239-RA	CGAGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGCATCCTGAAGAACCTGCACAGGCCCA	69	+	chr2L	5802803	5802872	5802803..5802872	CG7239-RA,	FBgn0031740,	CG7239,	1	.
CG32402-RA	AGCAATGGCCTTATTTACAACCACAGAAGAACGTCTGCTGCCCTACCGATCTAAATGGCACACCTTGGT	69	+	chr3L	6318875	6318944	6318875..6318944	CG32402-RA,	FBgn0041624,	Or65b,	1	.
CG14625-RB	CATCCCAGACAAGAGGCGATTAAGAAGCAACTGCGCTCATCGGAGGTCAAGGACTTGGAAGCCAG	65	+	chrX	1096861	1096926	1096861..1096926	CG14625-RB,	FBgn0040358,	CG14625,	1	.
CG9663-RA	GACATGGCCAACGGAAACTATACACTTGCCCTCATCTTTCTGTTCGGCGTTTTGGTCTTCCTGCGCA	67	-	chr2L	3295384	3295451	3295384..3295451	CG9663-RA,	FBgn0031516,	CG9663,	1	.
CG12862-RA	CCAGGTGTTCGAGTACAAGGACTTCCTGAGCTACCTGGGCATACTGCAAACTCTGCCTTTGGACACCTT	69	-	chr2R	10527743	10527812	10527743..10527812	CG12862-RA,	FBgn0033950,	CG12862,	1	.
CG12853-RA	CCAACTAGTTTGGTGGAACTAACTTAAAAAGAGGAATTCAATGTTTCCGTAGAACAATAAACCAATGGT	69	+	chr2R	10821342	10821411	10821342..10821411	CG12853-RA,	FBgn0040747,	CG12853,	1	.
CG2278-RA	CGCCAGCCGATTACCTGAGAAACGGACCCAGTTACTCCAACGATGGGGGAAACTACCGAAATGGTTACT	69	-	chrX	8063001	8063070	8063001..8063070	CG2278-RA,	FBgn0030017,	CG2278,	1	.
CG8282-RA	CCCGCACATTGTTTACACACCCCATTGAAACGCAAGCCTCATCGATTACACACATCCGGGAGACGAAGT	69	-	chr2L	8218299	8218368	8218299..8218368	CG8282-RA,CG8282-RB,	FBgn0032005,	Snx6,	1	.
CG13965-RA	TCCCCAACAGATGGCGAAACGTCTCCAGTTACAGAAGCCAGTTCCATCGGAGAATTAACTCAGACCACA	69	-	chr2L	19962073	19962142	19962073..19962142	CG13965-RA,	FBgn0032834,	CG13965,	1	.
CG5005-RA	CCAGTTCCGAAGGCCTGGACACAAGTCACATGGCAGATTCGTCCGGTGGAGGCAATTATAATTTCCACA	69	+	chr2R	13645855	13645924	13645855..13645924	CG5005-RA,	FBgn0022740,	HLH54F,	1	.
CG4608-RB	CCCGGCGATGATGCACAGTGCAACCAAGATCCCCACTAAAGACGATGAATATCAATGTATTACGACGGA	69	-	chr3R	15621154	15621223	15621154..15621223	CG4608-RC,	FBgn0014135,	bnl,	1	.
CG10161-RB	TACAAGTTCGAGGAAAGCAACCCTTTCATCAGCGAGGACGAAGATATCCAAGTCGCCAGCGTGGG	65	+	chr3R	19507129	19507194	19507129..19507194	CG10161-RB,	FBgn0040227,	eIF-3p66,	1	.
CG5815-RB	TTACGATGCAATAAGATGAAATGCAGAGTAGATTGACGGAAAGGAGAACAGGAAAACCAGAGAAGTGCA	69	+	chr3R	22940466	22940535	22940466..22940535	CG5815-RA,CG5815-RB,	FBgn0027574,	CG5815,	1	.
CG5790-RA	CGGATTGGCTCAAAGGATAGCCGATGATGGTAGTGTAGTGCAGTCGAGTGATCTCAGCTCCCGGGAAGT	69	+	chr2L	18296011	18296080	18296011..18296080	CG5790-RA,	FBgn0032677,	CG5790,	1	.
CG1519-RA	GGACGAAGACAGCGACAATGAGACGCACTAGTTCGTTTGTGTGCCAGTGAATCTAATTCTGGGCCTCAT	69	-	chr2R	5734197	5734266	5734197..5734266	CG1519-RA,	FBgn0023175,	Prosalpha7,	1	.
CG14745-RA	TATCGGCATCTCCTTCCTGGGCAACTACAATACCAACACCCTCACCTCTGCTCAGATCACCGCTG	65	+	chr2R	4604815	4604880	4604815..4604880	CG14745-RA,	FBgn0043575,	PGRP-SC2,	1	.
CG6251-RA	GGAACGCAGCCAAACCTACCTGATGGTGGAGAATCTGGACACACAACTGAAGCAGATGTCCGAGGATCT	69	+	chr2R	12232996	12233065	12232996..12233065	CG6251-RA,	FBgn0034118,	Nup62,	1	.
CG10990-RA	GCGCGAGATGACCTCGGTGCTGATCTCCGATCTCTACGGACGCGTTATTACCGGCAAGGATATTGAGAA	69	-	chrX	13645123	13645192	13645123..13645192	CG10990-RA,CG10990-RB,	FBgn0030520,	CG10990,	1	.
CG7893-RB	AGCCAACGAATCACCTTGCGAACTTGATGGATGATGAGTCGAAAATGTGTAGTTAGCAAACGCAACGAT	69	+	chrX	19166554	19166623	19166554..19166623	CG7893-RB,	FBgn0040068,	vav,	1	.
CG15697-RA	CCCAACGCCAACTCCACATAGAAGGATTTTGGATGAACAAGTGTCTACCTTTTACTCCAGATTGATATG	69	+	chr3R	16677052	16677121	16677052..16677121	CG15697-RA,CG15697-RB,	FBgn0038834,	RpS30,	1	.
CG7129-RA	CGCCAATCTGCCTACGTTGTAACCATAATTAGCCCCCGATCTTTAACGATCTATAAATTGTATACCCGA	69	-	chr3R	14115253	14115322	14115253..14115322	CG7129-RA,CG7129-RB,	FBgn0010877,	l(3)05822,l(3)05822,	1	.
CG10255-RA	TGCGGCACGGTCATGAACATAATGTTGTCGAGAAAATGATGGACCATCTATTTACCGACCTAAGCCGAT	69	+	chr2R	10826547	10826616	10826547..10826616	CG10255-RA,CG10255-RB,	FBgn0033984,	Lap1,	1	.
CG17031-RA	GTGTTCAAGGAGGATCGATCAGAAAGCGAAATTCAGAAGGCGGACTTAGAGGAATTCAAAGGTCCCGCA	69	-	chr2L	12611227	12611296	12611227..12611296	CG17031-RA,	FBgn0032439,	ref2,	1	.
CG31775-RA	AGCAACAAGGCTGGTAAAAACCAATTCATAGCACCGTCTTAACGCAGATACCTCAATAAAAATATGACA	69	.	.	.	.	.	CG42586-RA,CG42586-RB,CG31775-RA,CG31775-RB,	FBgn0260954,FBgn0028537,	CG42586,CG31775,	2	.
CG5927-RA	AGCGCCTACATCCGGAGTATATCAGAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCT	69	-	chrX	18098696	18098765	18098696..18098765	CG5927-RA,	FBgn0030899,	Her,	1	.
CG15865-RA	CGGGGCAAGTTCTCGCGTCCACGTCAGGGATTTCCCGCTCTGCAGAACTGTGAAGAAAACAATGG	65	-	chrX	16556164	16556229	16556164..16556229	CG15865-RA,	FBgn0015336,	CG15865,	1	.
CG16892-RA	TTCGACTGATCTTAAAGCTTAGTGATTTTCATAGTAATACATTTTTTGATTTGGTTTTTGTAAGCGTTA	69	+	chrX	9169291	9169360	9169291..9169360	CG16892-RA,	FBgn0030122,	CG16892,	1	.
CG4889-RA	GGGCAGGACCAAAACGTATGCGAAGTGGACAGTATAATAGTTCGAGAAAATCGGTAACCAGGGCTGGAA	69	+	chr2L	7315727	7315796	7315727..7315796	CG4889-RA,CG4889-RB,	FBgn0004009,	wg,	1	.
CG3837-RA	AGAGTCGACGTCATGTGATAAGCGGTCTGAAGCCCTACACACAGTATGCGTATTTCGTGAAGACCCTCA	69	+	chr3R	10746519	10746588	10746519..10746588	CG3837-RA,	FBgn0038279,	CG3837,	1	.
CG33127-RA	ACTTCCGCACATTCAACACCTGACATTGAGGGATACAGAACAAGTTCACGCAGAGATCCAGCCCCTGAT	69	+	chr2L	322183	322252	322183..322252	CG33127-RA,	FBgn0053127,	CG33127,	1	.
CG11907-RA	TGCGTCAGGTCATGTCGAAGATCTATCTGCATGCCATTTCCCTAGCGCTCCTCTATACCACGACCCTGT	69	-	chr2L	356426	356495	356426..356495	CG11907-RA,CG11907-RB,	FBgn0031250,	Ent1,	1	.
CG11755-RA	CCGCCCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGATCCTTTCCAACCACCT	69	+	chr3R	4504186	4504255	4504186..4504255	CG11755-RA,	FBgn0037611,	CG11755,	1	.
CG14974-RA	TTGTGCATCTGGCAGATAATTGCTCCATAGAGAAACTGACGGTGAACGACTCCCTGGAGTATCTGCA	67	-	chr3L	3620644	3620761	3620644..3620691,3620741..3620761	CG14974-RA,	FBgn0040694,	CG14974,	1	.
CG11534-RA	CAAGCTGTTTGTGTTCGTAGAAAAATTGTGTGCGGTAAAGAAACTTCGCCAAAATCTGGTGCATATGCG	69	+	chr3L	12126330	12126399	12126330..12126399	CG11534-RA,	FBgn0046296,	CG11534,	1	.
CG6876-RA	GCCTGCAATGTTCAGGTGTTGGGTGCACAAAAGAAAACCCTCTCGGGCTTCTCACAAACGCAGATG	66	+	chr3L	15153146	15153212	15153146..15153212	CG6876-RA,	FBgn0036487,	Prp31,	1	.
CG11877-RA	GCGCTGGATCAAATGATCGCAGACCAACAGACGTCCGATCTTTCGGCTATATCATCATGAGACACGCGT	69	+	chr3R	24943819	24943888	24943819..24943888	CG11877-RA,	FBgn0039636,	CG11877,	1	.
CG3776-RA	CAGTTCATAATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACGGCGCCAA	65	+	chr2R	20857645	20857710	20857645..20857710	CG3776-RA,	FBgn0035088,	CG3776,	1	.
CG2101-RA	GGTGCTCCAAAAGTGGTTCCCAGCAAGTCATTCGCTGAATGCGTGGAGAAACTGATAAACGAAGGCGAA	69	+	chr3L	2781927	2781996	2781927..2781996	CG2101-RA,	FBgn0035374,	mRpS35,	1	.
CG14607-RA	ACCCACCGAGAAGAACTTCATCTGGCGGATTATCTACCCCATCATCTCGCAGTGGACCCTATGGACC	67	+	chr3R	3068688	3068755	3068688..3068755	CG14607-RB,	FBgn0037488,	CG14607,	1	.
CG15743-RA	CCTCCACGAGACCGCACAGATACCGGATGTGACCGTAAATGCCCAGGATGTCACTGTTTGGGTAG	65	+	chrX	13180817	13180882	13180817..13180882	CG15743-RA,	FBgn0030465,	CG15743,	1	.
CG11715-RB	TCTCCTCGCATCCGATCTCGATCGCAATCTGCTCTTCAAATCCAGATACGAGTCTCTGCACTGAAAGGA	69	+	chrX	11375353	11375422	11375353..11375422	CG11715-RB,	FBgn0030304,	Cyp4g15,	1	.
CG11816-RA	TTGGGACACCTATTGAGCAAATATGGCCATTGTACGAGGATCAATTGGTTGTATTTCCGCAAATG	65	-	chrX	13447616	13447681	13447616..13447681	CG11816-RA,	FBgn0030495,	CG11816,	1	.
CG31558-RA	TCTTCGCCTGACCTGAATGTGATATAATACACTGTACGCCTTACAGGATAATGTAGAAATAAACATTTT	69	-	chr3R	1937406	1937475	1937406..1937475	CG31558-RA,	FBgn0046875,	Obp83g,	1	.
CG30059-RA	ATACAACACCTTCTTTGGCGGGAAGTACTTGAATCAGTACTGGGGCGCTGGGGATGTGCCAAAGG	65	-	chr2R	9301581	9301646	9301581..9301646	CG30059-RA,	FBgn0260475,	CG30059,	1	.
CG17290-RA	TCTATCTGTGAAAAATTATTCGTTGTCTTGTCCTTCTTTGGTTGCTATCAAAGTTGAGTTCGCAGGAAA	69	+	chr2R	13042726	13042795	13042726..13042795	CG17290-RA,	FBgn0034201,	CG17290,	1	.
CG6226-RA	CGCCTGCAGTCGAACAACAAGACCTTCGACAGCCTCCTGAAGGGAAAACCATTTAAGTTCGCCCTG	66	-	chr3R	11157599	11157665	11157599..11157665	CG6226-RA,	FBgn0013269,	FK506-bp1,	1	.
CG17279-RA	TCTGGAGGATCTCCGAGACGATGGCAAGCTATATGCCGGAATATCCAAGGTCAAGTGCTTGCTGGATGT	69	-	chr3R	16876073	16876142	16876073..16876142	CG17279-RB,	FBgn0038850,	CG17279,	1	.
CG15278-RA	GCTGCAAGTTGGCCTTCATTAGCACACTGGTTCTCTTGTCGAACTTTGTGCTGTTCGTCTGTTTCGCCT	69	-	chr2L	14875627	14875696	14875627..14875696	CG15278-RA,CG15278-RB,	FBgn0032554,	CG15278,	1	.
CG10417-RA	AGCCCTTGGAGACCATGCCTATAAAACGAACGTAACCCTACCAGCTGAGGAACAAATGATATCTGCCCT	69	-	chr2R	1248677	1248746	1248677..1248746	CG10417-RA,CG10417-RB,	FBgn0033021,	CG10417,	1	.
CG9044-RA	CGTTTGGTGGCCATTGATCTGTTGCCCTGGAAACTTGGCTTGTCCTTCACCTTAAAGGATTGGGGAGGA	69	+	chr2L	5954350	5954419	5954350..5954419	CG9044-RB,	FBgn0031752,	CG9044,	1	.
CG31548-RA	CCAGTGTCAATGGGATTCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGGATC	69	-	chr3R	1462040	1462109	1462040..1462109	CG31548-RA,	FBgn0051548,	CG31548,	1	.
CG15579-RA	TGGCGCGTTACCTGTACGCTGACCACATTTTGGAGGCCTTCAACGTATTCCATCGTCCACTCAACCT	67	-	chrX	4205668	4205735	4205668..4205735	CG15579-RA,	FBgn0040906,	CG15579,	1	.
CG11861-RA	GGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAAGATATGTCAGTCTCCAATACGATCATGGAT	69	-	chr2L	15267622	15267691	15267622..15267691	CG11861-RC,CG11861-RA,CG11861-RB,CG42615-RF,	FBgn0261268,	Cul-3,	1	.
CG31451-RA	CGCCTCATTTCGTACAAAGAGAAACCGCAACAAGGAAACACTGCACATCGTTTTTTACACCCTTGCGTT	69	+	chr3R	19810049	19810118	19810049..19810118	CG31451-RB,	FBgn0051451,	CG31451,	1	.
CG32176-RA	CCAGTGGAGAAAGTACAGCGAAAGGAAAAGGATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGC	69	+	chr3L	17429740	17429809	17429740..17429809	CG32176-RA,	FBgn0052176,	CG32176,	1	.
CG7372-RA	TTCAGGGTCAGCAACACTTCTTACTCATTACATTTTAAGATGCCACTGTACTTGGAAATGATGGAGACA	69	+	chr3L	15616120	15616189	15616120..15616189	CG7372-RA,	FBgn0036522,	CG7372,	1	.
CG10465-RA	ACCAGACCAAGAGCTCATGCAGGCAACGTCTTCAGCACGAGTAGGAAGTGCAAGTGGAACCAGCATTAA	69	-	chr2R	1227371	1227440	1227371..1227440	CG10465-RA,	FBgn0033017,	CG10465,	1	.
CG3048-RA	GAGAACTTCCAGAGGCCGTCCAACGAACCAGATCAGCTAGGATTCGGCTTCCCACGCTTCATCTC	65	+	chr2L	4379943	4380008	4379943..4380008	CG3048-RA,CG3048-RC,CG3048-RD,	FBgn0026319,	Traf4,	1	.
CG5965-RA	TCGGCTTGGTGCTTAGCACATGTTTGTTTGCGGGCAAAACCAAATTGGACTAACCAAGGAGCGAGAGTT	69	-	chr3R	23082886	23082955	23082886..23082955	CG5965-RA,CG5965-RB,CG5965-RC,	FBgn0010328,	woc,	1	.
CG15322-RA	CAGCAGCATCAATTTGCCATATTGCCACGTTTTAGCAATGGTAACCCCAAGGCCGTTTACAGCCT	65	+	chrX	20031811	20031876	20031811..20031876	CG15322-RB,	FBgn0031088,	CG15322,	1	.
CG7292-RA	ACGAGAGTTACGGCTATGTGCTGCCCAATCACATGATGCTGCAAATCGCTGAGAGTCTTCCAAGGGAGA	69	-	chr3R	10709890	10709959	10709890..10709959	CG7292-RB,	FBgn0038269,	Rrp6,	1	.
CG4063-RA	GCCCTCCCCACCAAAAGTCCTTTACCCAATTCCACAGTTGTCCTCCAAAAAAGGGATGCCAAGAGATCA	69	+	chr2L	418217	418286	418217..418286	CG4063-RA,	FBgn0023444,	ebi,	1	.
CG6736-RA	GCGGAGCAGTGCGTCTAAGGATGCTAGAGTGCGAGACCTTATCCGTAAGCTACAGCAGCCGGATGA	66	-	chr3L	9796931	9797058	9796931..9796986,9797047..9797058	CG6736-RA,	FBgn0044049,	Ilp4,	1	.
CG15649-RA	AGTCCACCTGCAGATGGCTTTATCATTCGACTGATTACGGAGACACTGCAGAATAACGTGGCTGG	65	-	chr2R	16861041	16861106	16861041..16861106	CG15649-RA,CG15649-RB,	FBgn0034563,	CG15649,	1	.
CG14496-RA	CTGCAATTGTCCGACTTAAATGCGGCCGTTCAAGGTATGGGCAGGTTTGCTGTTACCCAGGACCAG	66	+	chr2R	13977946	13978012	13977946..13978012	CG34386-RC,	FBgn0085415,	CG34386,	1	.
CG12099-RB	GAGCGTAACGAACTGCTAGCCGAATCGGATGTCTCCTGTCCCGAGGATGTGTTCATCCAGCAAGC	65	-	chr3L	1556735	1556800	1556735..1556800	CG12099-RB,CG12099-RA,	FBgn0035232,	CG12099,	1	.
CG2112-RA	CGAGGAGGATCAGGACCCTCAGACTGACCGGAACCAAAACGAAGAAAATGTGCAAGACCAGGATATCGA	69	-	chr3R	27628889	27628958	27628889..27628958	CG42233-RB,	FBgn0250755,	CG42233,	1	.
CG15845-RB	AACTACAGAATAACATTAGACGTAACATCCCACAGCGTAAACCATAACGCGTAATGATACTTCCCCACG	69	+	chr2R	2555044	2555113	2555044..2555113	CG15845-RA,CG15845-RB,CG15845-RC,	FBgn0000054,	Adf1,	1	.
CG13575-RA	GGATCCGAGTAGCCTACGGCGGTTCCTCAGCTACAAGCAGGAGGTGTTCACCATTTACAAGCAGTG	66	+	chr2R	20144577	20144643	20144577..20144643	CG13575-RA,	FBgn0034996,	CG13575,	1	.
CG9177-RC	TGACGGACATCTTCTATCGCTACAAGATGCCACGTCTGCAGGCAAAGGTCGAGGGCAAAGGAAAC	65	-	chrX	15882769	15882834	15882769..15882834	CG9177-RD,CG9177-RC,CG9177-RA,CG9177-RE,CG9177-RB,CG9177-RG,CG9177-RF,	FBgn0030719,	eIF5,	1	.
CG5037-RA	GCACCCGTACTGGACGTCACGAACTACTGGTTTGCCTTGGAAACACTACCTCTGAACGCGTACTTCGC	68	+	chr2L	10332598	10332666	10332598..10332666	CG5037-RA,	FBgn0032222,	CG5037,	1	.
CG31636-RA	TGCAGGATATAAGCCACACCATGGAAGCGAAATTGTCCAGCTATGGGCCCTACTTTCGCGAAAGCCAAA	69	-	chr2L	6656776	6656845	6656776..6656845	CG31636-RA,	FBgn0051636,	CG31636,	1	.
CG10522-RA	CCGAGCAGCAAATACTCCTATTGGGCTGTAACACGGGACTGTATGCGTATCACTTGGACTCGCAGCGAT	69	-	chr3L	12502445	12502514	12502445..12502514	CG10522-RA,	FBgn0002466,	sti,	1	.
CG8704-RA	GCCAATAGTCTGGAGCAGATCGGTTCGATGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTTTCCC	69	-	chr2R	4117704	4117773	4117704..4117773	CG8704-RA,	FBgn0010109,	dpn,	1	.
CG13131-RA	TGTCCATCGCGTGCCAAACTTCTTGCCAAGCTCACAGTCTACGATCCATTCGATCAAATTGGACGGAGT	69	-	chr2L	10013414	10013483	10013414..10013483	CG13131-RA,CG13131-RB,	FBgn0032175,	CG13131,	1	.
CG13120-RA	GATCATTGCGGCTGTGTATCTCCGCCCTTGACCGGCAGTTCCATGGATCTCGACTATTGTATGCTTCCC	69	-	chr2L	9765981	9766050	9765981..9766050	CG13120-RA,	FBgn0032142,	CG13120,	1	.
CG8764-RA	AACTCAACCTAACAAATCAGCTGTGAGTTTGGCGTGTGGAAAAAGTTTGATTGGGAACAAATCGGACGT	69	-	chr2R	8644956	8645025	8644956..8645025	CG8764-RA,	FBgn0011227,	ox,	1	.
CG11516-RA	CGGTAAAAACACGCAGAAAAAAATTCAAATTCCAATTTCTGAGAAGACTTCTCTTGATGTGACCAAAAA	69	+	chr3R	25254389	25254458	25254389..25254458				0	no match
CG1983-RA	CAATGGACCCAATCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGCACT	65	-	chr3R	26002423	26002488	26002423..26002488	CG1983-RA,	FBgn0039751,	CG1983,	1	.
CG9654-RA	TGTAGTAAATCAGGCTATTTTAATTTTGACATCTCTTCGAAAATGGATGCGGGAAATTGTGCCTCGTCG	69	-	chr3R	9481999	9482068	9481999..9482068	CG9654-RA,	FBgn0010258,	Rbp4,	1	.
CG31094-RB	ACACGCCTGAAGACTGAGCAACTCTGTGTATTGTGTAAATTAATTATTTTAAAATTTTAAGGCACGGCA	69	-	chr3R	21567526	21567595	21567526..21567595	CG31094-RD,CG31094-RG,CG31094-RH,CG31094-RI,CG31094-RJ,CG31094-RK,CG31094-RL,	FBgn0066101,	LpR1,	1	.
CG13073-RA	GCAGATCGCGACTCGAATTCATACTGTACACGGAAGTCTACCAAGTCGACGAGGATTCGGTTTCCTCCA	69	-	chr3L	16206215	16206284	16206215..16206284	CG13073-RB,	FBgn0036577,	CG13073,	1	.
CG33346-RA	CGGTTGCCGACTACAGCTTCCCAAAAATCCTAAGACAAACCAACAAGTACTTGAATGTCGTTCCCCAGT	69	+	chr3R	24495697	24495766	24495697..24495766	CG33346-RB,	FBgn0053346,	CG33346,	1	.
CG9620-RA	CTGATGATTGGGGCCAACAACCTGTCGCTGTCCTACGTCACAGTGGCCTTCTACTACATCGGTCG	65	-	chr3R	4129213	4129278	4129213..4129278	CG9620-RA,	FBgn0037567,	Gfr,	1	.
CG9707-RA	TCACCGGTCCTCAATCTAAGACGCGCTCAGCTAACTTCAATCGAGTCCTGGAGAACCTGTTGGAGCTGT	69	+	chr2R	17276198	17276267	17276198..17276267	CG9707-RA,	FBgn0034628,	Acox57D-p,	1	.
CG16725-RA	CGCCTGGTACATGTCCGGCTATTATACGGGCCTCTACCAGGGAAAGAAAGAAGCCAGCACCACTAGC	67	-	chr3L	16573628	16573695	16573628..16573695	CG16725-RA,	FBgn0036641,	Smn,	1	.
CG31785-RA	TTCCAGCTCTTCGTCTTCTACAGACAGCTCATCAGACTTCGCCACGCATTCGACTGCTTGGTCAGGTC	68	-	chr2L	18124609	18124677	18124609..18124677	CG31785-RB,	FBgn0051785,	CG31785,	1	.
CG40131-RA	ATTATATCCGTTCTAATAGATACAATGGAAGTAGAATTTCACATGATTCAAGATCAGGATATGGG	65	+	chr2R	80169	80234	80169..80234				0	no match
CG10362-RA	CTGGGATCATGGGCTACATGTCAATGGTTAAATACTTGTGTATTCGCGTGAACTCGTACATAATCTTAA	69	-	chrX	11820698	11820767	11820698..11820767	CG10362-RA,	FBgn0030358,	CG10362,	1	.
CG14098-RA	ACCTCTCGCCTCGTCATATAGCGGCTCTAGAGAACCAGATGAAACCCAAACCTCCGGTAGAAGCCATGT	69	+	chr3L	19539501	19539570	19539501..19539570	CG14098-RA,CG14098-RB,	FBgn0260461,	Rcd7,	1	.
CG13081-RA	GCGCGAGGACATTCTATACGACCAACGGCAAAAGGGTGGGGAGAACTATCAGTTCAAAGTGGATGGGGT	69	+	chr2L	19540859	19540928	19540859..19540928	CG13081-RA,	FBgn0032804,	CG13081,	1	.
CG15202-RA	TCTACTGCAGACCAGACTATGTCCTCGAAATTAGCTATTGCGGTCGCCATAATTTGGTGCCCACGG	66	+	chrX	11037190	11037320	11037190..11037227,11037291..11037320	CG15202-RA,CG15202-RB,	FBgn0030271,	CG15202,	1	.
CG33170-RA	GGTCCCCCGAGTGGATGATCCCCAGAAGTTGATGCAGCGTTTCAACGAGAAACTCAAAGAACTAATGGA	69	+	chr3L	22858976	22859045	22858976..22859045	CG33170-RA,CG33170-RB,	FBgn0053170,	CG33170,	1	.
CG9755-RC	ACGCACACTCGGTTGCATACACCCACACAATGAACGACTCTTCAGCCCATTCACGTTGCTTTTGCACTA	69	-	chr3R	4895797	4895866	4895797..4895866	CG9755-RA,CG9755-RD,CG9755-RC,CG9755-RB,CG9755-RE,CG9755-RF,	FBgn0003165,	pum,	1	.
CG6074-RA	GCCGCTCGTCAGGAGTTAAGAACTTGGAAGAACGGAACCAACATGAAACTGACCGCTTTCCTCGAGGCT	69	-	chr3R	22931818	22931887	22931818..22931887	CG6074-RA,	FBgn0039486,	CG6074,	1	.
CG1999-RA	GCGCAGTCCGGATGAAATATCCCGTGAGGTGATGGGTCGTGATTGGGAGGAAACGGTCAGGACATATAA	69	+	chrX	7253535	7253604	7253535..7253604	CG1999-RA,	FBgn0029947,	CG1999,	1	.
CG32694-RB	AGCAGGAGCAGATGAAACGAAAGGTGATGAAAGCCCAATCAACAATCAAGCATCTTCATCCCCAACAA	68	+	chrX	9894686	9894754	9894686..9894754	CG32694-RB,	FBgn0052694,	CG32694,	1	.
CG41113-RA	TGGCTATACAGCTTGAAGAAAGATGACTTTCCCGCCATAGCAAGTGCTCTCGGGATAAAGCTGGAAGGT	69	+	chr3RHet	2094709	2094778	2094709..2094778				0	no match
CG10530-RA	CTAGTTCCTTTTTAATGTCGGTTAACAGGAAATAGAAAACCTTTATTACCGTTCTTATCAAGGAGAACA	69	-	chr3L	6127847	6127916	6127847..6127916	CG10530-RA,	FBgn0020638,	Lcp65Ag1,	1	.
CG33493-RA	GGGCAGCACCAGATACCAGGCCAAACTGCATCTACACCATGACTATAAGACCAATGCGTATCCCTCGTA	69	-	chr3L	10685915	10685984	10685915..10685984	CG33493-RA,	FBgn0053493,	CG33493,	1	.
CG11911-RA	AACAAGTCCATGAGGGAGAGACCCACCTGTACGGTTGGGGACAGCCAAAGTCCTACATCTTCTCG	65	-	chr2L	320705	320770	320705..320770	CG11911-RA,	FBgn0031249,	CG11911,	1	.
CG7425-RA	TCTGTGATCCCAATCCAGACGATCCTCTTGTTCCAGAGATTGCCAGAATATATAAAACCGATCGGGAAA	69	-	chr3R	10559263	10559332	10559263..10559332	CG7425-RA,	FBgn0011217,	eff,	1	.
CG33156-RC	CTTATAAAACATTGTCAAGTTGTGCTGTAGATTAAGCCTGATTGCAAACTGATTGAAATGTGTTCTCCT	69	-	chr2R	9435617	9435686	9435617..9435686	CG33156-RE,	FBgn0053156,	CG33156,	1	.
CG11489-RB	GCCATAAAGAGGAGGTAGCAGGAAAATGGGATGAGGAGCTAGCATTAAAGGACTCGATCGAAGCACACA	69	+	chr3L	22276328	22276397	22276328..22276397	CG11489-RB,CG11489-RH,CG11489-RE,CG11489-RF,CG11489-RI,CG11489-RJ,CG11489-RK,CG11489-RL,	FBgn0025702,	srpk79D,	1	.
CG3972-RA	CATCGTGCTGCAGTACTGCGTGCACAGACGTCCAGACATCTACCCCAATCCCACCAAATTCGATC	65	-	chrX	361850	361915	361850..361915	CG3972-RA,	FBgn0010019,	Cyp4g1,	1	.
CG1137-RA	GCCCTCGACGAATACATGATTGGGTTCCTGAAGGTTGAGCGGGTCTACAAGCAGATCGTCGTAAAGCGA	69	-	chr3R	2384571	2384640	2384571..2384640	CG1137-RA,	FBgn0037454,	CG1137,	1	.
CG6178-RA	AATGACTTCAAAGCTACTGCCCGGAAACATTGTGTACGGAGGTCCTGTGACTGAACGACAGGCCC	65	+	chr3R	19978817	19978882	19978817..19978882	CG6178-RA,	FBgn0039156,	CG6178,	1	.
CG15749-RA	GCCCAAAAGAGGATCTACAAGCAGAGACTACGCAGTTTGCAGCAATCCACATTGCATATCACAGCCGCC	69	+	chrX	13263197	13263266	13263197..13263266	CG15749-RA,	FBgn0030477,	dmrt11E,	1	.
CG14252-RA	GGGACGCTTCCGAAGAGGACAGATTCATCGACATCTGGATCCACAACTTGCATCTGTTTGAGCCTGGCA	69	+	chr3R	22771502	22771571	22771502..22771571	CG14252-RA,	FBgn0039462,	CG14252,	1	.
CG11763-RA	GCGCCTATTTAAAACTAATCGCCGTTCTTTTAATTGTTCGATTATGCTAAAGATGCTATGCGTTTGGCG	69	+	chr2R	6323314	6323383	6323314..6323383	CG11763-RA,CG11763-RC,CG11763-RD,CG42236-RE,	FBgn0262114,	RanBPM,	1	.
CG9919-RA	ACCCGGGCTAACAGGATTACAACTGCTTGAATCGTAGCTCATTTTAAGCCCACTATGGATTGCATCCGC	69	-	chrX	16222801	16222870	16222801..16222870	CG9919-RA,	FBgn0030742,	CG9919,	1	.
CG14085-RA	AGTCCTGCCTTATCAAAACACTGGAGGAACACGCGATTGCAGGATGGAGTGATTGCCTGGACAAGC	66	+	chr3L	19265865	19265931	19265865..19265931	CG14085-RA,	FBgn0036859,	CG14085,	1	.
CG3165-RA	GAGGCAGGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTGACTCACTGCGCGC	69	+	chr2L	2977725	2977794	2977725..2977794	CG3165-RA,	FBgn0031484,	CG3165,	1	.
CG33200-RA	CCCAAACTGCGTATGAGGTCTATCAGAGAATCCTGCTAAGATTACAAGCCCAGGAACATACACGCTCCA	69	+	chr2R	18296384	18296453	18296384..18296453	CG33200-RA,CG33200-RB,	FBgn0053200,	ventrally-expressed-protein-D,	1	.
CG32076-RA	GGCCAAGTGCTGTTTCTACGCTTCGATCATTCTGCCGTTCGTGGGATTCCTCTTCATCAATGGTTCCAT	69	+	chr3L	11158979	11159048	11158979..11159048	CG32076-RA,	FBgn0052076,	Alg10,	1	.
CG30166-RA	TAGTGAATTTTTATCGCTTATCACGCCCGAGGAATTGCCGCTGGGTAAGTCCCTCCATGTCCGCC	65	-	chr2R	20313186	20313251	20313186..20313251				0	no match
CG15286-RA	CGGCCAACATCGGTAACAATACACGGAGCATAAATGTTTACGGACCCACATCCGCTTTTACCCAGGCGT	69	+	chr2L	14339382	14339451	14339382..14339451	CG15286-RA,	FBgn0028531,	CG15286,	1	.
CG3411-RA	GCCAACGGCAAAAAGACAAAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAGCTGCGTCGC	69	+	chr2R	20232086	20232155	20232086..20232155	CG3411-RA,CG3411-RB,	FBgn0004101,	bs,	1	.
CG33475-RA	CCAGCCAAGTGTCTACTACCTGAGCAACAGTGTCAGAGAATTCGAAGTGCCCATTTTTCATCAACCTGG	69	-	chr2R	6298365	6298434	6298365..6298434	CG33475-RA,	FBgn0053475,	CG33475,	1	.
CG31438-RA	GATGGGGCCATGAATATATCTGGAAACATAACCATGTTATGGGACGTCGAACCTTCAAATCGCGTCGCG	69	+	chr3R	17235043	17235112	17235043..17235112	CG31438-RA,	FBgn0051438,	CheB93b,	1	.
CG13195-RA	TGCGAAACCCCTACACTCCTACCGCTATCTTACCGCTCCTTTTCAATGGAGTGTATGGGCCTGTTTGGT	69	-	chr2R	7589022	7589091	7589022..7589091	CG13195-RA,	FBgn0033648,	Ir48b,	1	.
CG33194-RA	TAAGAGATGGCAAAAGTACTGGCGGGATTCAATTTGTCATTGACTTGGAAGATTCCACATTATAGCCAA	69	+	chr2L	8477885	8477954	8477885..8477954	CG33194-RA,	FBgn0053194,	CheA29a,	1	.
CG5343-RA	CGGCGAAGGTTTAGGGCCAGTAACTACCAGTCGACAACTCGTGTCAAGCCTTTCATTTGCACCATGCC	68	-	chr2L	10430293	10430361	10430293..10430361	CG5343-RA,	FBgn0032248,	CG5343,	1	.
CG15036-RA	TGAGGCAATCCATAAAGCACATATTCGCACTGTTGGTTGCCCTGGAGTGTTTAAGCCTTGGCGACAC	67	-	chrX	7318777	7318844	7318777..7318844	CG15036-RA,	FBgn0040922,	CG15036,	1	.
CG8745-RA	GGAGGGTCTGCAACAGAAGGCTCTTGTTTTGGGCGATTATCTTTTGGAGGAGTGCAATCGTCTGAAGCA	69	-	chr3L	13854247	13854316	13854247..13854316	CG8745-RA,	FBgn0036381,	CG8745,	1	.
CG5779-RA	GGTGGCACGGATTCATCGACACGGTGTTCAACAAATTCAAGACTCGCCTGAACCCGTACAATGCCG	66	-	chr2R	13775926	13775992	13775926..13775992	CG42639-RA,	FBgn0261362,	proPO-A1,	1	.
CG11339-RA	GCTAATCGCCTGCTCCACTACACGACCTTTGAGAACAACCAGTACAAGTTCAGTCTGAACAATGCGCTG	69	+	chr3R	27187165	27187234	27187165..27187234	CG34347-RB,	FBgn0085376,	CG34347,	1	.
CG32302-RA	AGTCCCACACGTGCATGAACAACGATAGGTACCAATGCCCCTTCCGAACCTCTGAGATCGAGTACTGC	68	+	chr3L	2269467	2269535	2269467..2269535	CG32302-RA,	FBgn0052302,	CG32302,	1	.
CG40221-RA	TGAGCATATTCCTGTGATTGTTCACTCGTTCACCAAATTAACCGTAGTACGAGCGTTGAAAAGGTCAGC	69	+	chr3LHet	2222304	2222373	2222304..2222373				0	no match
CG15770-RA	TCCCCAATTTATGGTTAAACCACGGTGTGTTTTGTTAATTGCTGGGACATTCTCAGGGAATTGCT	65	+	chrX	5659765	5659830	5659765..5659830				0	no match
CG14265-RB	CACGGAAACCAGCACCAGCACCGAGTCGACCACCGCTACGGGCTCAAGCACTTCGACAACCTCGGCCAG	69	-	chrX	3130542	3130611	3130542..3130611	CG14265-RB,	FBgn0040393,	CG14265,	1	.
CG11328-RA	AGCCAATCACCTTGCAAACGAACTCAGCCTGGTTGCTAACAATTTCATGTAATCCAAAGAGTGGACCCT	69	-	chr2L	6679176	6679245	6679176..6679245	CG11328-RD,	FBgn0028703,	Nhe3,	1	.
CG40155-RA	GCTGTTCTGAGAATACAGCATGCATATAGAGGCTGGAGATTAAGAATTCGTTTTATGAGAATGCGGCGT	69	-	chr3RHet	1089	1158	1089..1158	CG40155-RB,	FBgn0058155,	CG40155,	1	.
CG30381-RA	GAAAGCCGTTTCGACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGAGCG	65	-	chr2R	3817705	3817770	3817705..3817770	CG30381-RB,	FBgn0050381,	CG30381,	1	.
CG40452-RA	GGAAAGTAGCATCCCAAGTCAACGTAAATATACCCTTACAAGCAAAACGGTCCTCATGGTTTTAAGCTT	69	+	chr3L	24291666	24291735	24291666..24291735	CG40452-RA,CG40452-RC,CG40452-RD,	FBgn0011288,	Snap25,	1	.
CG13029-RB	TACGCCAAAGGATTATAGATACAATCAAGGGCTACTGGGCAACTTCATGGCCTTCATGGGAAAACGAGG	69	+	chr3L	16854673	16854742	16854673..16854742	CG13029-RC,	FBgn0036670,	CG13029,	1	.
CG31059-RA	GGCCATGGGTCCTTTTGTCAGCACGCTATTGAAGATCTTAACCGAGTTCGTCATGATAATGCAGCAGCT	69	+	chr3R	23368715	23368784	23368715..23368784	CG31059-RA,	FBgn0046887,	Gr98b,	1	.
CG15912-RA	GCTTTGCCGGCAAATTCGATTTCATTCTGACTTCCTACGAAGCCGGTGTTATGAAGCCCGAACGCGGTA	69	+	chrX	4443578	4443647	4443578..4443647	CG15912-RA,	FBgn0029712,	CG15912,	1	.
CG40162-RA	GCGCCGCGAAGTAGCGAAAACAACACCAACGCTGCAAACGTAAATGTTTCTGACGATTTCAGGCCTTTA	69	.	.	.	.	.				0	no match
CG1545-RA	GCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGATCCAAACGCCAGATGGAGAATTTAAGCGACCC	69	-	chrX	10952444	10952513	10952444..10952513	CG1545-RB,	FBgn0030259,	CG1545,	1	.
CG7327-RA	GGCTCACATACAAGCCAATCCCGAAGAAGCTAACAGGCGTCATAAAATCTGCATTCGCACCTACGATAA	69	+	chr3L	15652939	15653008	15652939..15653008	CG7327-RA,	FBgn0014849,	Eig71Ei,	1	.
CG40177-RA	GAACGGAGAACGGAGAAGGATATGTGAAGGGTCAAGATGCCCCGTCGAGATGCCTAACGACAGGC	65	-	chr3LHet	1413386	1413451	1413386..1413451				0	no match
CG2341-RA	GATCCCCATCCCCAGTACAAGTACGCCTACGATGTTCAGGACTCCCTCTCCGGAGACTCCAAGAG	65	+	chr3R	2518748	2518813	2518748..2518813	CG2341-RA,	FBgn0004780,	Ccp84Ad,	1	.
CG2914-RA	CAGTGCTTGGTGCCAACAGAGGCCGATTAATGCCATGCATCAGGATGTCCGGCAAAAAAGCATCG	65	-	chr2L	551727	551792	551727..551792	CG2914-RA,	FBgn0005660,	Ets21C,	1	.
CG31051-RA	CCAGCAGAACCACGAACTGACTGACACCTTCAGCATACAGGAGATGACCATTGACTCGGATCTGGAGTC	69	-	chr3R	24345483	24345552	24345483..24345552	CG31051-RA,	FBgn0051051,	CG31051,	1	.
CG11638-RA	CGGCCATTTCCCTAAGCTACGATTGAGGCTACCCGAGTTCGCTCTATGTGCATGTTGATTGTCGAGAGA	69	-	chrX	908896	908965	908896..908965	CG11638-RA,	FBgn0040351,	CG11638,	1	.
CG4212-RA	TGTGATCTTTCTCATTGGCAACAAATCGGATCTGGAGAGCACTCGGGAGGTTACCTACGAGGAGGCCA	68	+	chr2L	14357817	14357885	14357817..14357885	CG4212-RA,CG4212-RB,CG4212-RC,	FBgn0015791,	Rab14,	1	.
CG9083-RA	TCCAGAGGCGAGCAATCATTCGAGAGTCCTTCGTAACGAATCCAGAGAAATGGCAGCCCGTTTCATAAT	69	.	.	.	.	.	CG9083-RB,	FBgn0035077,	CG9083,	1	.
CG6292-RA	ACCAGCGACAATCAAGAAAGAACAGGGAATAACTCCGATGACCAGTTTGGCTAGTGGGCCCGCAC	65	-	chr3L	17546652	17546717	17546652..17546717	CG6292-RB,CG6292-RA,	FBgn0025455,	CycT,	1	.
CG40444-RA	TCTTGAAGACGATTTGCTTGCTCGCTTATCTTCTGCTGGAGACAACGTCCTTGAAGATGTCACTCTGGT	69	+	chrYHet	30965	31034	30965..31034	CG40444-RA,	FBgn0001315,	kl-5,	1	.
CG3397-RA	TCTGCGCGAAAACGTTTTTACCAAGTCCTACAGTTGGGGCTCCACTTTATCCACGGTTAACATGTTCAA	69	-	chr3R	7808948	7809219	7808948..7809005,7809207..7809219	CG3397-RA,	FBgn0037975,	CG3397,	1	.
CG33467-RA	GCGCGGGTGAAAAATGTTTCCTGCAATGTGAAGCCGATCAATTGGAATACGGCGTTGGTTAACTTGGAT	69	-	chr2R	10943514	10943583	10943514..10943583	CG33467-RA,	FBgn0053467,	CG33467,	1	.
CG31385-RA	CCACCCAAACTGGATTCTAGTACATTAACTATGGTACCACTCAAGGACAGCACAGAGGATCTCTCGCCC	69	-	chr3R	10492878	10492947	10492878..10492947	CG7649-RC,	FBgn0051314,	Neu3,	1	.
CG1954-RA	GGCACTTGCTCCAAGCGAATCTCAAGGGAATTCCTAACACAATAGCCGAAATGTGCCGTCTGTACCACA	69	+	chr3R	24872536	24872605	24872536..24872605	CG1954-RA,CG1954-RB,	FBgn0003093,	Pkc98E,	1	.
CG32088-RA	TTATGGCTCCGAAAGTTTGGCTAACATGCTGGTTCTTTTGCACGGAGATCTCAAGGATTCCGACGGCGA	69	+	chr3L	11723905	11723974	11723905..11723974	CG32088-RA,	FBgn0052088,	CG32088,	1	.
CG15624-RA	GTTCGTGATGATGGAATGCGTGGAGAGATTGGGAATCTTCGCCTGCATCAGTGAGCTCACCGAGC	65	-	chr2L	4933673	4933738	4933673..4933738	CG15624-RA,CG15624-RC,	FBgn0031649,	hoe2,	1	.
CG4036-RA	GAATATGTGCAACGGCGCTTCGAAGACGTTCCCCTGCTTCGTGGCTTTCAGACCATCGAACAGTG	65	+	chr2L	9791371	9791436	9791371..9791436	CG4036-RA,CG4036-RB,CG4036-RC,	FBgn0032149,	CG4036,	1	.
CG8609-RA	GCCAGCATCAATCAGGCCAACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCACATCGGATT	69	-	chr3L	7243093	7243162	7243093..7243162	CG8609-RA,	FBgn0035754,	MED4,	1	.
CG17489-RC	CCCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGTCTTCTGCCGTTACGAAGA	69	-	chr2L	22427704	22427773	22427704..22427773	CG17489-RA,CG17489-RB,CG17489-RF,	FBgn0064225,	RpL5,	1	.
CG1584-RA	CTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTACGGAAAGATAGTGCTGTGTGCGGATCTC	66	-	chr2R	5733681	5733747	5733681..5733747	CG1584-RA,	FBgn0023180,	Orc6,	1	.
CG5506-RA	TGAGCGGGATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATGAAAAGGGAGCCGTTGCCG	68	-	chr3L	17877026	17877094	17877026..17877094	CG5506-RA,	FBgn0036766,	CG5506,	1	.
CG7369-RA	TCAAAACAGCGCAGTACTCAATGAGAACACTCTTTCCATGGCATCCTTCGAGTGTGAGCCACCGGA	66	+	chr3L	22740654	22740720	22740654..22740720	CG7369-RA,	FBgn0037188,	CG7369,	1	.
CG14084-RB	AGGCATTAGTCAACCGATTCTGGAAATCACAACACGAGGTCAAGGGTCAATGCACAGTCAACCACAAAG	69	+	chr3L	19254594	19254663	19254594..19254663	CG14084-RA,CG14084-RB,	FBgn0260857,	Bet1,	1	.
CG1618-RA	ACGATCCAGGCTTCGCGATGTTTGTTCGGTCCCAAAGCCCAGATAAAAATCACAATCCACATCCCGGAG	69	+	chrX	13156058	13156127	13156058..13156127	CG1618-RA,	FBgn0000346,	comt,	1	.
CG15335-RB	AACTTTAGCAATATTATGCGTAGTTCTGTAACTTTTCGGTTGGTTGGAAAGGATCTTGAAAGCGTTTTG	69	-	chrX	8015521	8015590	8015521..8015590	CG15335-RB,	FBgn0030001,	cyr,	1	.
CG8713-RA	AGTCCAAATACAAAGATGTCGTCGTACAAAGTCATATTTTTACTCGCTGTTAGTGTAGGCTCTCCTAGG	69	+	chr2R	3984277	3984346	3984277..3984346	CG8713-RA,	FBgn0033257,	CG8713,	1	.
CG32167-RA	ACTGGATTTATTTGTGTGTGCATAACTGCTTATAATGAGCCCAGTGATAATGATAGTCAATTTGCTGGG	69	-	chr3L	16997926	16997995	16997926..16997995				0	no match
CG13134-RA	GCGGCAGGATAGGAAACTTCACACTGGTGGCGAATTTCCATCACTTCGACGAGAATCCTCCGCTCG	66	-	chr2L	10097790	10097856	10097790..10097856	CG42843-RB,	FBgn0262032,	CG42843,	1	.
CG17387-RA	ACTGCGCCAGATTCGATACGAGAATTCCGAGCTCATAGTCGACCTCAACATGGTCAAGATGCGCTGCAG	69	-	chr3R	608466	608535	608466..608535	CG17387-RA,	FBgn0037276,	CG17387,	1	.
CG7285-RA	TCCGGAAGAGCTTCTTCAAGGCCTTTACCTGTATGAATAAGCAGGATATCAACGCTCAACTCCAGCTGG	69	+	chr3L	18568137	18568206	18568137..18568206	CG7285-RA,	FBgn0036790,	star1,	1	.
CG1742-RB	CCGATGCTACCTGGGATGGTCGGCTATATTGATACTCAAGATCTTCGCCGCTGGTATTTACACGGGTCT	69	+	chrX	20913586	20913655	20913586..20913655	CG1742-RB,	FBgn0025814,	Mgstl,	1	.
CG41128-RA	AATGACTTCTCGCGATAATATTTTCGAGGAAAAAATATGCAATAGATTAGATCATTGCGTTTCTGATGT	69	-	chr3RHet	1808355	1808424	1808355..1808424	CG41128-RB,	FBgn0069923,	CG41128,	1	.
CG32047-RA	TCGCAGCTCAAGGTAACCAAAATGCTGCTAATTGTCTCGACGGTTTTTGTTTGCCTCAATTTGCCCAGC	69	+	chr3L	9644728	9644797	9644728..9644797	CG33696-RA,	FBgn0053696,	CG33696,	1	.
CG9805-RA	CCGGACCGGGATGAATTCCTTGAGGCCCTTAAAAAAGAACGTGCCTCCCTCTACGTCGAAAAGCTCAAA	69	-	chr3R	256982	257051	256982..257051	CG9805-RA,	FBgn0037249,	eIF3-S10,	1	.
CG2052-RA	TCAACGACCATCGGACTCATGAAGTTCGGCGATTCATTCCTCTAGGGATGACTGAGGACTGAGGATTGA	69	-	chr4	396541	396610	396541..396610	CG2052-RC,CG2052-RD,CG2052-RE,CG2052-RF,CG2052-RB,CG2052-RA,	FBgn0262636,	Lin29,	1	.
CG9328-RA	CTGATCCTGCCTAAGAAGCTCATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCG	65	+	chr2L	20813268	20813333	20813268..20813333	CG9328-RB,CG9328-RA,	FBgn0032886,	CG9328,	1	.
CG9527-RA	GCGGTGGTTACTTCCGCGAAAACTCTAACCAACTGGAGCTGTACGAACAGGGCATTCTGGCTCTG	65	-	chr2L	6445382	6445447	6445382..6445447	CG9527-RA,CG9527-RB,	FBgn0031813,	CG9527,	1	.
CG3536-RA	TCTGCAGGTGAAGGTCATCAAATGGTTCGATTACCTGTGGCTTACGCAAAAATGCTCGGACGAGGAGC	68	-	chr2R	18634903	18634971	18634903..18634971	CG42260-RA,CG42260-RB,	FBgn0259145,	CG42260,	1	.
CG15740-RA	TGCGTTCCAATTCTGTTGTCAATGTTTCCAACTCATTTCGCATGAAATTTCTGTGCACAAAAACAAGCG	69	-	chrX	11736789	11736858	11736789..11736858	CG15740-RB,	FBgn0030340,	CG15740,	1	.
CG14439-RA	GGTGGCATGACCTTTGCCTACAACGCCGATCTCTACTACAACACGTACTTCCCCGACGTGGACTTG	66	+	chrX	6648666	6648732	6648666..6648732	CG14439-RA,CG14439-RB,CG14439-RC,	FBgn0029898,	CG14439,	1	.
CG33295-RA	GGCAACATAAAGCTGTACACCCATCGAAAAGTGGGCGTCATTCTACCAATTAAAGGTAACAATGGCCGC	69	.	.	.	.	.				0	no match
CG31626-RA	TGACCTCTAGGAAATAACTAATTACCCACATTCTTCAAGAAGTGTTTTCAATTTGTTCTATAATTAAAT	69	-	chr2L	21236661	21236730	21236661..21236730	CG31626-RA,	FBgn0051626,	CG31626,	1	.
CG3415-RA	GCGCCTATGTCGACCTGAAGAGCTCACAGGCCAAGCTGTAAGCGCGGATCACCTAGAGACACATAGTC	68	+	chrX	16167604	16167672	16167604..16167672	CG3415-RA,	FBgn0030731,	Mfe2,	1	.
CG31293-RA	CTCGGAGAATCGCTCTTGCAATTCGTTTCAATGACAAACGCACATTCCACAATTGGTTTCATATAATAC	69	-	chr3R	11649825	11649894	11649825..11649894	CG31293-RA,	FBgn0003227,	rec,	1	.
CG15237-RA	GTCATCCCGGTAACCCAGGACTTTTACTCCGCCGACGACATTCAGATGAACGACGAGACCTCACC	65	-	chr2R	2696734	2696799	2696734..2696799	CG15237-RA,	FBgn0033104,	CG15237,	1	.
CG15196-RA	CACGCAGAGTCCCTGGAGACACCTGATGCGATTGACCAGGAATAACTCGAGCAGTACTTCCGGTG	65	+	chrX	11304256	11304321	11304256..11304321	CG15196-RB,	FBgn0030296,	CG15196,	1	.
CG30352-RA	CAAGACCCGGGCGGAACTGGCCATTCTCGTAAACCCCGAAACACCGAAAGCCATGGAATAGTATG	65	-	chr2R	4708645	4708710	4708645..4708710				0	no match
CG40204-RA	ATCATGGGAAATGAAACAAGCTACATATGCAGGCACAAAAAAAACAACAAATGGATCTTCGTCAGGTGA	69	+	chrU	497367	497436	497367..497436	CG40204-RB,	FBgn0058204,	CG40204,	1	.
CG11426-RA	ACAGCTTCAGCGAGGATCAGTACTGCTCTAAGGTTTAGTGAGACGGATAAGATGCTTTCGTAGCGATGT	69	+	chr3L	22466302	22466371	22466302..22466371	CG11426-RA,	FBgn0037166,	CG11426,	1	.
CG5539-RA	CTGCTCCCCTTAGGACTTCCGATCTGTTGCAGGACTCCACTGGAGAAGGAATTGGAGGCAGAACTT	66	+	chr2R	19692897	19692963	19692897..19692963	CG5539-RA,	FBgn0034907,	CG5539,	1	.
CG3350-RA	GACTCCTCCGGCTACAAGCTCAGCAAGGCTCTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTT	69	-	chr3R	23113668	23113737	23113668..23113737	CG3350-RA,	FBgn0039509,	bigmax,	1	.
CG3068-RA	CCAATATCGGCTTTCATTGTTAACTGACCAAAATTGTAATCTGTTCTGTTAGTTGTCGAGTGCCTGTGC	69	+	chr3R	7788940	7789009	7788940..7789009	CG3068-RA,	FBgn0000147,	aur,	1	.
CG31522-RA	GTCCATGGGTAGCTGGGGAAATATGCTATGTAAGCGCGTGAAAACATTGTTAATCCTGACTGCCGAGGG	69	-	chr3R	268209	268278	268209..268278	CG31522-RD,CG31522-RA,CG31522-RB,CG31522-RE,CG31522-RF,CG31522-RG,	FBgn0051522,	CG31522,	1	.
CG15635-RA	GCCTGCTAGTTCCAAAATACGTCCTCCACCACCTTCTGAACCTCAAAACCCGGACAATGTGCCCAAG	67	+	chr2L	4646333	4646400	4646333..4646400	CG15635-RB,	FBgn0031617,	CG15635,	1	.
CG15418-RA	GGTCACCAGTTGCGATATGCCTACAACAAGAAGACCGGAAACTGCGAGAGCTTCATCTACACGGGCTGT	69	-	chr2L	3621220	3621289	3621220..3621289	CG15418-RA,CG2788-RA	FBgn0031554,FBgn0015663	CG15418,Dot	2	.
CG31012-RB	GTTTGAGCCTAGTTGAATCGCCTTTTAGCTAGCTTTTGAATACTTGATTTTTAGCGTCTGCTGAACTCT	69	+	chr3R	26651761	26651830	26651761..26651830	CG31012-RC,CG31012-RD,CG31012-RB,	FBgn0027598,	cindr,	1	.
CG6439-RA	CAACCAGTTCGACGTGATGGTCACCCCCAATCTCTATGGTGCCATTGTGGACAATCTGGCCAGTG	65	-	chr3R	17843130	17843195	17843130..17843195	CG6439-RA,CG6439-RB,	FBgn0038922,	CG6439,	1	.
CG11799-RB	ATTCGAAAACCCGATTCGAAGTAACGACTTTATCCCCTAGATCTGACGAATTCAATATGCTCGATGACG	69	-	chr3L	11107790	11107859	11107790..11107859	CG11799-RG,CG11799-RH,CG11799-RI,CG11799-RJ,CG11799-RK,	FBgn0036134,	fd68A,	1	.
CG3818-RA	CAAGGCGGATGATCACAACGGTTTCGAGGCAATTGTCCAGCGTGAGCCCACGGACATCAAGATAC	65	+	chr2L	9543246	9543311	9543246..9543311	CG3818-RA,	FBgn0032125,	Cpr30B,	1	.
CG17349-RA	TGGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTATCGATCCCGATCGAAACT	69	+	chr2L	19372346	19372415	19372346..19372415	CG17349-RA,	FBgn0032771,	CG17349,	1	.
CG12159-RA	GAGGTCTTCCCGTGGATGATGTTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCG	65	-	chr2R	3803479	3803544	3803479..3803544	CG12159-RA,CG12159-RB,	FBgn0033232,	CG12159,	1	.
CG6038-RA	CTGCCCTGCTTCTACGCTAGAATCTCCTCTTGAGTGCAGTATTTAAGTGCCTTACTAACTCGCTCTGCA	69	-	chr3L	11703724	11703793	11703724..11703793	CG6038-RA,	FBgn0036198,	crim,	1	.
CG9742-RA	CGTTAGCCGTAGTGCTTAGTCTTAAGGCTCCGTAACATTCATAGTCAGAAGAAACACACAAACTCTTGA	69	-	chrX	16533911	16533980	16533911..16533980	CG9742-RA,CG9742-RB,	FBgn0261791,	SmG,	1	.
CG9698-RA	TGGCTCTTCTTGTGCAGGCCAAGAAGGAATTGGAGGACTTCCGTGGTCTGAATGATACCTACCAGGAGT	69	+	chr3R	26341358	26341427	26341358..26341427	CG9698-RA,	FBgn0039784,	CG9698,	1	.
CG32137-RA	ACAAATCGGAGAGCCTAGGCATCATAGGTATTGTACTTAATTGTTATTTGTATACGGGAAGCATTGCCC	69	+	chr3L	13955064	13955133	13955064..13955133	CG32137-RA,CG32137-RB,	FBgn0052137,	CG32137,	1	.
CG6024-RA	TGGCATCAAACACACAGATCATCCACAGAACACATCAGACATCAGAACCATGCAGAAAACAGAACCCAA	69	-	chr3L	11726733	11726802	11726733..11726802	CG6024-RD,CG6024-RE,	FBgn0036202,	CG6024,	1	.
CG30465-RA	TCATTTGCTGTTCGTTTTGAGTTCGAGTGTCCAATGGGTTAACCTTTTTGTTTTATGTTTTTTTT	65	+	chr2R	11493773	11493838	11493773..11493838				0	no match
CG12235-RA	ATTTCCGCACACCGATAACTTCTTGTTTTGGCCAAAAATTAAGCGAACTGAACAATATACCATTCC	66	-	chrX	19540005	19540071	19540005..19540071	CG12235-RA,	FBgn0031050,	Arp11,	1	.
CG31397-RA	CGGATGAGGGCCCTTTTCCCAGTTTCAGTGCCTATGTATATGCGAGGAGTATATCTCCCGAGTCCCCGT	69	+	chr3R	6329789	6329858	6329789..6329858				0	no match
CG7363-RA	GCCGAAAGGGGGATTCAATGGGACTGTACCTCTTGCATTCATTGTGTGCACTTGCTTCTTTGCATCTTG	69	-	chr2L	10576029	10576098	10576029..10576098	CG7363-RA,CG7363-RB,	FBgn0032269,	w-cup,	1	.
CG7336-RA	TGGATCTATTCAATTCATATTGCGGACGAAATAACCGAAACTGGAGGAAATTAACCCGTTGTGAGCTGG	69	+	chr3L	15650965	15651034	15650965..15651034	CG7336-RA,	FBgn0004594,	Eig71Eg,	1	.
CG2147-RA	TCGGCGGATTCTCAGAGCTGCAAATTAAACAATAGTCGTCCACGCCTAGATCTTCGCAAGCGCGT	65	+	chrX	8135009	8135074	8135009..8135074	CG2147-RA,	FBgn0030025,	CG2147,	1	.
CG7587-RA	GCTCTTGAAGATTGTGTGTGCCGGGTCTTCCAGAACGGCTGTCTTCTGAACGAGGAGAGCAATCGG	66	+	chr3R	13420270	13420336	13420270..13420336	CG7587-RA,	FBgn0038523,	CG7587,	1	.
CG5991-RA	TAGTCTGGCTGAGTTCTTTACCAGGCCACTTAAGGAGGGCGTTCGTGTCATCGATCAGCAGGCTC	65	+	chr3R	19878343	19878408	19878343..19878408	CG5991-RA,CG5991-RC,CG5991-RB,	FBgn0026576,	CG5991,	1	.
CG3941-RA	GCGCCAAACTCGCAGTCGGGATGCTCAAAGAATCACTCAGAAGACAGGAAAGAACGAAGGCAAGCCTC	68	-	chr2R	19436660	19436728	19436660..19436728	CG3941-RA,CG3941-RB,	FBgn0034878,	pita,	1	.
CG11414-RA	GGCGAGTCGTATGACATTGTACCCAGCCCCTATACGTACACCGATCCACCAGATACCGAGGTCAGGAAT	69	+	chr2R	20451696	20451765	20451696..20451765	CG11414-RA,	FBgn0035024,	CG11414,	1	.
CG40378-RA	ATCTGTAACACATAACGGCCACAATACTTGGAAACTCCATATATCTCGTGTACAGATAAACGACTCCGG	69	+	chrU	72337	72406	72337..72406	CG40378-RB,	FBgn0058378,	CG40378,	1	.
CG40300-RA	TTTGGCCTGGCTATGTTACAGCCGTTGACGAATACAAAGGTGGTTTAATGCTATGCTGCGACGTTTCGC	69	+	chr3L	23562054	23562123	23562054..23562123	CG40300-RD,CG40300-RE,CG40300-RF,CG40300-RG,	FBgn0250816,	AGO3,	1	.
CG12848-RA	ACAAGTGCTACATGGACCGTAAGTTTGAGGCGAAGAAGACCGTGAACCAGGGAATCGTCCAACCGG	66	-	chr2R	20650194	20650260	20650194..20650260	CG12848-RA,	FBgn0040666,	CG12848,	1	.
CG10349-RA	ACTCCGAGTATGGCTGTGTGAGTGCATATAAAGAAATACGGGCTCTGAGGCCAGGTCTGAATGAGCGGC	69	+	chr3R	12707215	12708191	12707215..12707250,12708157..12708191				0	no match
CG6327-RA	TATGTCCCTGGAGAACGACATGAAGAACCCCAGCCACTTCATCGGTTGCCCATCTGTCCTGAACT	65	-	chr3L	11030833	11030898	11030833..11030898	CG6327-RD,CG6327-RA,CG6327-RB,CG6327-RC,CG6327-RE,CG6327-RF,	FBgn0036115,	CG6327,	1	.
CG9662-RA	TGCCGTCACCGATGGCCGTTTTCAGTGTGATTTTGTTTTCCTATTTTCTGGTGACAGGCGGTATCATAT	69	-	chr2L	3376411	3376540	3376411..3376420,3376480..3376540	CG9662-RA,	FBgn0031529,	CG9662,	1	.
CG11652-RA	GGCCTGCTGATGTACGCCATGGTTATCAGCGACATTGTGGAGCGATTCACCAGCGCAGATACTGTGATA	69	-	chr3L	11688350	11688419	11688350..11688419	CG11652-RA,CG11652-RB,	FBgn0036194,	CG11652,	1	.
CG40359-RA	GCGCAGTCGAGAGTCCGAAGCTCCGCAGAAGAACAGCGAAACCTTTAGAGGCGACAAATCTGCTATCAA	69	.	.	.	.	.				0	no match
CG1963-RA	CAACAAAAACAGCAGCTAAGAACAAACGAGTTTTGGATCGAAAATGTTGTTAACAATTAAATGCGCTCA	69	+	chr3R	25548907	25548976	25548907..25548976	CG1963-RA,	FBgn0024841,	Pcd,	1	.
CG14468-RA	GTGCGCGCTTTGACAATGGTTGCCTACATTTTGAACGCTGTTCTTGGGATTCACATGGCCCGACAAC	67	+	chr2R	1683157	1683224	1683157..1683224	CG14468-RA,	FBgn0033042,	Tsp42A,	1	.
CG15365-RA	ACAGCAACAAGTCCTGTGACACAAACACAAGCCAAAGTCAACCAAAGCAGCAGGCGAAAGAGGAGC	66	-	chrX	8949855	8949921	8949855..8949921	CG15365-RA,	FBgn0030077,	CG15365,	1	.
CG13458-RA	CGCCAAGTGGTGTGGAGCCTATCAGATTTTCAAGGCCTTCATCATGTTTCAGGAACAGTTCGGCCG	66	+	chr3L	15108391	15108457	15108391..15108457	CG13458-RA,	FBgn0036479,	CG13458,	1	.
CG14975-RA	GTCGTCGCTTCTGTCGCAGCCGTTGCCAAAGTTGTCATTGTCATCCGTACCAGCAAACGCAGCAG	65	+	chr3L	3825536	3825601	3825536..3825601	CG14975-RA,	FBgn0064227,	Rdh,	1	.
CG1961-RA	AAGTACGACTACACGAAGCCGGTGGGATCGCGTGTCATATCCGTAACGATTCGTTGTGCGGACTG	65	+	chrX	11000700	11000765	11000700..11000765	CG42249-RB,	FBgn0259101,	CG42249,	1	.
CG32041-RB	GAGAGAGTGCCGGTATTTTCTAGATTATATGGATTTCCTCTCTGCCAAGAGTATAAATAGCCACCGGTT	69	+	chr3L	9367017	9367086	9367017..9367086	CG4456-RB,CG4460-RA,	FBgn0001228,FBgn0001223,	Hsp67Bb,Hsp22,	2	.
CG2065-RA	AGCTTATCATAATGAAGACTAACGCAAAATGTAATAATTTATGTTTGAATTGTAGAATTCTTACGGATT	69	+	chr2R	3552676	3552745	3552676..3552745	CG2065-RA,	FBgn0033204,	CG2065,	1	.
CG6341-RA	GGGATGACGAGACCGACATGAAGGAGATGGAGAACAATGTCCGCACCATCGAAATGGACGGTCTGC	66	+	chr2R	12756351	12756417	12756351..12756417	CG6341-RA,	FBgn0028737,	Ef1beta,	1	.
CG40392-RA	TTGTAAGTGTATTTACTGACAAACCAACACCAAAACTAGAATCGCCTTTTACAGTAACACAAGCC	65	.	.	.	.	.				0	no match
CG9573-RA	CTCCTCCTAGAGAAGCGCCCAACAACTTTCGTCACTCCACCGTCCATTCAAGCGCCATCGATTAGTGAT	69	-	chr2L	9012990	9013059	9012990..9013059	CG9573-RA,	FBgn0032089,	Rcd-1r,	1	.
CG11593-RA	GGTCGAGGGCCGACTACAGCTACGTGATGGACAATTTGTTTCTGTACGTGGTCAAGACCCTGGAACAGT	69	-	chr3L	4038895	4038964	4038895..4038964	CG11593-RB,	FBgn0035488,	CG11593,	1	.
CG6130-RA	GAGAAGCCCGAGGAGTAGACCTACAACATGGACGAATAGGCACAACACACGTTCCTGCCCCACTG	65	-	chr3R	11207773	11207838	11207773..11207838	CG6130-RA,	FBgn0038334,	h-cup,	1	.
CG9144-RA	AGCATACTACGCACAAGAAGCTCAACACCCGAAGAAAACTACTTGCCGGACATCAGTGAGCGCCGTTCT	69	-	chr2L	6064620	6064689	6064620..6064689	CG9144-RA,	FBgn0031773,	Fbw5,	1	.
CG15353-RA	ACATGGACAAGCAGTTTGATTTACTTTATACAAAAACTTTGGTATATATTTCATTTCTGAAGAACAATA	69	-	chr2L	2006792	2006861	2006792..2006861	CG15353-RA,	FBgn0040718,	CG15353,	1	.
CG15435-RA	GGAGCTCTACCAGCAGAAGAGGGTCAACGTTTCGGATGCGAACAAGATGGACAAGGAGAGCGCCC	65	+	chr2L	4460319	4460384	4460319..4460384	CG15435-RA,	FBgn0031608,	CG15435,	1	.
CG9601-RA	CACGGAGACTTGGTGGAGATCGTTTACGGCAGGCATCAGTTCGAGGTCGTCTTTAACCCTCCACC	65	-	chr3R	4168802	4168867	4168802..4168867	CG9601-RA,	FBgn0037578,	CG9601,	1	.
CG31697-RA	TTGGTGGATGAAAATCTGAACGAAGGTGGTCGCGAGTCGCTAAGGGAGACGATATACACCACGACCGC	68	+	chr2L	19535595	19535663	19535595..19535663	CG31697-RA,	FBgn0051697,	CG31697,	1	.
CG16704-RA	CCTGCAACCCATGTGGACCTATCGCCCAGATACGAACGAGTGCTTCACCTTCAATTACTCCGGCTG	66	-	chr2L	3692246	3692312	3692246..3692312	CG16704-RA,	FBgn0031558,	CG16704,	1	.
CG31351-RA	CCGGCGGAAAGTGGATGTTCGGACCGTTCATGTGCAACGTGTACAACAGCCTGGATGTTTACTTTTCCA	69	-	chr3R	8346217	8346286	8346217..8346286	CG42244-RF,CG42244-RG,CG42244-RJ,CG42244-RK,	FBgn0250910,	Octbeta3R,	1	.
CG1628-RB	CCCGCAGTCTAAGAAGAAATACACAATTGGTACATTTAAATAGGTGCGTTTCGTATAAAAAGAGAAAGA	69	-	chrX	10492226	10492295	10492226..10492295	CG1628-RB,	FBgn0030218,	CG1628,	1	.
CG10478-RA	CCGTGCCACGATTGATTCGCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATTGAGTT	69	-	chr3L	6003599	6003668	6003599..6003668	CG10478-RA,	FBgn0035657,	CG10478,	1	.
CG6066-RA	TAGGACCCAAGAAGAAAAAGAAAAAGGGCAAGAGAAAGCACAAGAAATCTGAAAAGAAGTCGAAGAAAA	69	-	chr3R	22941659	22941728	22941659..22941728	CG6066-RA,	FBgn0039488,	CG6066,	1	.
CG9485-RB	TGTACGGATACAAGATGGAATGAGATTCGATGCCTGAGGTCCCTTGAAATTTTGCTATTCCTATT	65	+	chr2R	17206979	17207044	17206979..17207044	CG9485-RB,CG9485-RA,CG9485-RC,CG9485-RD,CG9485-RE,CR33655-RB	FBgn0034618,FBgn0250824	CG9485,CG33655	2	.
CG15510-RA	CTTTCGGACACATCCTTACATCGGCGACCAGAAGAAGGATGGCAAACGTGAAGATCCAAGCGCCC	65	+	chr3R	25661789	25661854	25661789..25661854	CG15510-RB,CG15510-RC,CG42592-RA	FBgn0039707,FBgn0260969	CG15510,CG42592	2	.
CG33225-RA	AATCTCGGGCTTTTCTCATCGGCATTGTCAGCTATGGTAGTTCATCTTGTAGTGGTATCGGTGTTTACA	69	+	chr2R	17478849	17478918	17478849..17478918	CG33225-RB,	FBgn0053225,	CG33225,	1	.
CG11819-RA	TCCCCAAATCGGTGTATGGTTGGCTACACACAAACGACACTGATGAAACGTGCAATATTGATACTGCCA	69	+	chr3R	20887479	20887548	20887479..20887548	CG34349-RC,CG34349-RD,	FBgn0085378,	CG34349,	1	.
CG9357-RA	TATCCCTTGCTGCACGAAATCAACCGTGTGCTCTTCGGTGGCAATACACCATCTGGCTTGACCAC	65	+	chr2R	16950438	16950503	16950438..16950503	CG9357-RA,	FBgn0034580,	Cht8,	1	.
CG11372-RA	TGGTGTGTAGGAATGCCTGGCTTAATGGAGCTTGGGCACAAGAAGAGCGTTCGGAGTTTGACACAAACT	69	+	chr2L	75796	75865	75796..75865	CG11372-RA,CG11372-RB,CG11372-RE,CG11372-RD,	FBgn0031213,	galectin,	1	.
CG15414-RA	CAGGCAGCTGAAGCAATATGCCGTCATCGAGATTATTGACAACGACATAGACGAGACCCCGGCTC	65	-	chr2L	3481324	3481389	3481324..3481389	CG15414-RA,	FBgn0031542,	CG15414,	1	.
CG8652-RA	TGGCCTGGATGTGATGGTCACTTCACAGGCTGATCTGCTAAAGGATCCGAGATTCCAACGCGTTTTCGA	69	-	chr2R	12732123	12732192	12732123..12732192	CG8652-RA,	FBgn0026754,	Ugt37c1,	1	.
CG3948-RB	TAACTCAATGGTAGCCGTTTGTACTTTAATTTTGTCTGGTTTCGTTTCGCAATTTGATACCCTGC	65	-	chr3L	16665423	16665488	16665423..16665488	CG3948-RB,	FBgn0040512,	zetaCOP,	1	.
CG15825-RB	TCGATGACAACGGCAAGATTGGCACCCACAGTGTTCACTCGTAAAGCGTCTACATCAATCAGTACCCAT	69	-	chr2L	19383584	19383653	19383584..19383653	CG15825-RB,CG15825-RA,CG15825-RC,	FBgn0032773,	fon,	1	.
CG9853-RA	CGCGACACGTCTTTTCTAAAGTACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCT	69	-	chr3R	224612	224681	224612..224681	CG9853-RA,CG9853-RB,	FBgn0086605,	CG9853,	1	.
CG9793-RA	TGCGTCCTGCCAAACTTGTTTGCAACAAGCCATATCCTTTAGGGAACGCTGTTTGGAAGTCCAAAGGGA	69	-	chr3R	4555101	4555170	4555101..4555170	CG9793-RA,	FBgn0037620,	ranshi,	1	.
CG3082-RC	CGCCGAGACTATTCGATTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATGCATGGCTTCTCCGT	69	+	chr2R	18958495	18958564	18958495..18958564	CG3082-RB,CG3082-RA,CG3082-RC,CG3082-RD,	FBgn0021979,	l(2)k09913,l(2)k09913,l(2)k09913,l(2)k09913,	1	.
CG41056-RA	TGGATACAGATTTTCCTGTTCTACGAGGAGAACCAAAAGCTTTGTATTCGAAACTTCTAATTGGTGGAA	69	-	chr3RHet	1131518	1131587	1131518..1131587	CR41056-RB,	FBgn0058232,	CG41056,	1	.
CG4365-RC	TGTGCCCGTCATCTGTCCAAGTCTCGTCAAGCTGCAAAAACTACGAAAAGTCGGCTTCAGAGGCATGC	68	+	chr3L	20792056	20792278	20792056..20792088,20792242..20792278	CG4365-RC,	FBgn0037024,	CG4365,	1	.
CG40287-RA	GTAAGGGTAACATATTTAAATTGATCCTTTGCACAAATTAAAACGAATCCAATTCGCTTTGCGTGTTCC	69	+	chr2R	619513	619582	619513..619582				0	no match
CG8622-RA	CGGAGGCGCAAAATCCAATATGGGAGAATTGGTTGGCATGCAATAGAATTGGTACTAAAGCGCTTGCCA	69	-	chr2R	12637593	12637662	12637593..12637662	CG8622-RA,	FBgn0015584,	Acp53Ea,	1	.
CG12182-RA	TTAGCCTGCAGATGCAATCGATAGCCATGGGTGTCCTTCAGGATTTCCAGGTGATGGGACTGTGC	65	-	chr3L	2597889	2597954	2597889..2597954	CG12182-RA,	FBgn0028504,	CG12182,	1	.
CG2187-RA	GAAGTTCCTCTCCCTGCCTGTTACGGATCAGGATCTTGAGGAGGTGCCACTTCGAGGATCCAAGG	65	-	chr3R	27581223	27581288	27581223..27581288	CG2187-RA,CG2187-RB,	FBgn0017448,	CG2187,	1	.
CG13189-RA	TGATGTCATACCTGGGCCTTAACAGCACCAACATGATGATCCAGATGACGCAATCAAAAGCCAAGGCGG	69	+	chr2R	7787758	7787827	7787758..7787827	CG13189-RA,	FBgn0033665,	CG13189,	1	.
CG30219-RA	AAGCAGTCAACATCTTTCGGTGCGAAATGGCTCAGGATCCGAAACCACTTTACTTTGCCGTGGGC	65	-	chr2R	18535229	18535294	18535229..18535294				0	no match
CG9001-RA	ACTCCATACATGACACTGGCGAACTTCAGTATGCTTAGCATGACGCGTTGCTTTGAGTACCAGGCGGAT	69	-	chr2R	12886375	12886444	12886375..12886444	CG9001-RA,	FBgn0034175,	ste24b,	1	.
CG9611-RA	ACGACATACTGGAACTGCCCGAGTTCGAGGGAAACGAGGCCTTGAACGAGCTACATGCCAGCAATAATT	69	-	chr3R	9523021	9523090	9523021..9523090	CG9611-RA,CG9611-RB,CG9611-RC,CG9611-RD,CG9611-RE,	FBgn0028487,	f-cup,	1	.
CG2864-RA	GCAACAGCAGCACAACGTCCAAAACGAGCAGTACAGCCACGAAATCAATGGGTTCAGGTGGCCGC	65	-	chrX	3563323	3563388	3563323..3563388	CG2864-RB,CG2864-RC,	FBgn0023216,	Parg,	1	.
CG9093-RA	CGCGAGACCAGTGAAATCAGCTGCTGTCTGAAGTACCTTTTGTTCGCCAGCAATGTGATCCTGTGGCTC	69	+	chr2L	6000338	6000407	6000338..6000407	CG9093-RC,CG9093-RB,	FBgn0031760,	Tsp26A,	1	.
CG3166-RB	GGTCTGCTCTTGCTTCAAGATCAGCCTGGAAAAAGAGCTTTCAAAATTCAATTTCAATTGAGCCCCTAG	69	-	chr2L	2157096	2157165	2157096..2157165	CG3166-RB,CG3166-RA,	FBgn0000097,	aop,	1	.
CG6416-RB	TATGAGGTGCCATCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAAGACGTCGATGA	65	+	chr3L	8620740	8620805	8620740..8620805	CG6416-RB,CG6416-RE,CG6416-RF,CG6416-RK,CG6416-RM,CG6416-RN,CG6416-RO,	FBgn0035917,	Zasp66,	1	.
CG9614-RI	CCCAAACCATGGCTCCCTACAATAACATGACAGTGGTTACCAAAGGACCAATGGATATTAAGTCCCGCA	69	-	chr3L	19295417	19295486	19295417..19295486	CG9614-RI,	FBgn0003089,	pip,	1	.
CG9870-RA	GCAGCTGTCATGGATATGGGAATTGGGCTTTTTGTGGTGACCATGGGATTGGTTTCACATCGAGCACGG	69	+	chr2L	2383754	2383823	2383754..2383823	CG9870-RA,	FBgn0031422,	CG9870,	1	.
CG17023-RA	TTTCTAAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAAGAAACCGATTTCGACGTCGC	67	+	chr3LHet	2409947	2410072	2409947..2409958,2410016..2410072	CG17023-RA,CG17023-RB,CG17023-RC,	FBgn0024804,	Dbp80,	1	.
CG14213-RA	CCGGCGACAGTTCTTACCCAGATCTTGTCAAGTTAACACGATGAGTGCTCAACCGAGTCCGCATATGAA	69	+	chrX	19533302	19533371	19533302..19533371	CG14213-RB,CG14213-RA,	FBgn0031047,	Rcd-1,	1	.
CG15127-RA	CTACCAGGTGGACGTGATCGATCCCTACTATCAGCCGCCCGTGGAGGTGGTGAATGTTATTGGAC	65	-	chr2R	15568702	15568767	15568702..15568767	CG15127-RA,	FBgn0040730,	CG15127,	1	.
CG4916-RA	ACTTGGAACCGAAATAAAGCCTATTCCGAAGGTCATAGACCCCGCCCTTTATGTCGCAAACGTTGGCG	68	+	chr2L	10241906	10241974	10241906..10241974	CG4916-RA,CG4916-RB,	FBgn0004419,	me31B,	1	.
CG11768-RA	GACTGATCACTGGGAGCACGTTACATGGGACCGCAACAGCCTTGATCGCTACTCCAATCGATCGG	65	-	chr3R	4580268	4580333	4580268..4580333	CG11768-RA,CG11768-RB,	FBgn0037625,	CG11768,	1	.
CG8666-RA	GCTACGATCATGTTTAAAATGCGAAGTAGCCGATTTTGAAAGGAAACAACAGTTTTTGGCATACCATGC	69	+	chr2L	21356788	21356857	21356788..21356857	CG8666-RB,	FBgn0032943,	Tsp39D,	1	.
CG11582-RA	GCCATGTCCTCATCTCCAAACGATGGATACACATACAATTGGAGCGTGGTCTCGTTTTCAACGAATGGA	69	-	chr3L	4283286	4283355	4283286..4283355	CG11582-RB,	FBgn0261952,	srw,	1	.
CG11915-RA	AGTGGTCCTGAAGACGCCTACTCAGCAAAGTCAAAAACACTCACCTTCCCTGGCGTATCGGATGAAGGA	69	+	chr3L	16894385	16894454	16894385..16894454	CG42679-RJ,CG42679-RK,CG42679-RL,	FBgn0261565,	Lmpt,	1	.
CG3853-RA	TTCTCGCTGATCTACATTCCGGAGACCAAGAAACTCTCCTCGGCCAAGATCCAACAAAGACTGGGCGG	68	+	chr3R	12615464	12615532	12615464..12615532	CG3853-RA,	FBgn0015230,	Glut3,	1	.
CG33083-RA	GGCCAATATGCTGCAGTCACCTGTCCAGATGAATCTCCATAAGCCCTACTACCGGATGCGTCGCTTCT	68	-	chr3R	22791437	22791505	22791437..22791505	CG33083-RA,	FBgn0041224,	Gr97a,	1	.
CG31343-RA	GCTGGTTATCCCCTGCTCACAGTGACCCGTAATTACAATGCCGGCACTATAACGATCACCCAGAAGCGT	69	+	chr3R	17573229	17573298	17573229..17573298	CG31343-RA,	FBgn0051343,	CG31343,	1	.
CG14204-RA	ACGGCGCCTACATCTGGCACATCTTTGTCGTGGAAGTCGCCAATAGAAGCGTTCAGACCAATACGTACT	69	+	chrX	19480123	19480192	19480123..19480192	CG14204-RA,	FBgn0031032,	CG14204,	1	.
CG15468-RA	GGGAGGAGAGCAGATGATTTCGCCAGGCTATCAGAGGTTAGGCCCTTCCTTGGATCGAGTACCAGATGA	69	-	chrX	4854886	4854955	4854886..4854955	CG15468-RA,	FBgn0061196,	SIP3,	1	.
CG33331-RA	CCCAGTGCTGGCATTCTCAAGTCATTGGCGTATAGCTATCGCAAGGCTCAAAAGACATTCGCTGTTTAG	69	+	chr3R	10713263	10713332	10713263..10713332	CG33331-RA,	FBgn0067628,	CG33331,	1	.
CG9033-RB	GGAGTCCATCAAGCGATCGAACAGCGAAGACACCATGGCATGGGACAACATCCAGCAGAAGTTGATGTG	69	-	chr2R	7265330	7265399	7265330..7265399	CG9033-RB,	FBgn0033629,	Tsp47F,	1	.
CG9556-RB	CGAGAAGGCGAGTTCGAAAAGGCACACACGGACTTCTTTGAGGCGTTCAAGAACTACGATGAGAGCGGT	69	-	chr2L	8996244	8996313	8996244..8996313	CG9556-RA,CG9556-RB,	FBgn0013746,	alien,	1	.
CG32117-RA	ACCGGCCACGAACTTTTACTGCCATCCAAACCGAAGATCTCTGCCATCCAACCAGCTAAGACCAATTGT	69	-	chr3L	12896268	12896337	12896268..12896337	CG32117-RA,	FBgn0052117,	CG32117,	1	.
CG31087-RA	GGCCAAGTTGAAGCTCTTCCAAAAGGAGGAACAGATGTACCATAGCATTCTGCCCAAATTCGAGAAGCT	69	-	chr3R	21137957	21138026	21137957..21138026	CG31087-RA,	FBgn0051087,	CG31087,	1	.
CG32158-RC	TGCCTGGTTCCTTCAGTGGGAGAACATTTCTGCCCACGTTTTCCCCATTATTCTGGCCCTTTTTCTGG	68	-	chr3L	16486640	16486708	16486640..16486708	CG42514-RA,CG42514-RB,CG42514-RC,	FBgn0260388,	CG42514,	1	.
CG9200-RA	TAATTACATCACCACGACCGTTCTACCGGACTTGCCAACTCTGTCGCCCAATGACGAGGAAGGGG	65	-	chr2L	6959949	6960014	6959949..6960014	CG9200-RA,	FBgn0031876,	Atac1,	1	.
CG33285-RA	AGGACGTCTACAGATGATGCCTCACGAGGTGGAAGGGATGTCTGATGGGGAGCTCAACCTTAGGTTTGA	69	-	chr3L	21081876	21081945	21081876..21081945	CG33285-RA,	FBgn0053285,	CG33285,	1	.
CG6022-RA	ATGGCAGCGTTCAATTCTGGCAGTATCCCAGCCAACAGATGTTCTGGAACGCCATGCTACGCAAG	65	-	chr3R	17852375	17852440	17852375..17852440	CG6022-RA,	FBgn0038925,	Cchl,	1	.
CG6123-RA	ACAAATCGGTCCTTGTATATCGAGTAGCAAACAATCGGGCGAATCAGTGCAAAATACGATGCTCCAGCG	69	-	chrX	18219450	18219519	18219450..18219519	CG6123-RA,CG6123-RB,	FBgn0030913,	CG6123,	1	.
CG5977-RA	GCCAATGATCCTGCCCTCCTTCATCAATCCAATTTGGAGAAGCTGTGATGTGAGTCTCAGAGCGCAACC	69	+	chr3R	19867355	19867424	19867355..19867424	CG5977-RA,CG5977-RB,	FBgn0039141,	spas,	1	.
CG30033-RB	AAGATGCAGGTGCTAGGCGGCAATCCACTCAGCTTGTGTCTCTTGGTGATCATCACTCCGTCACT	65	+	chr2R	7180049	7180114	7180049..7180114	CG30033-RB,CG30033-RC,	FBgn0050033,	CG30033,	1	.
CG11970-RA	CCAGACGACCAAGCAGTTACCCACGATGACACGAATTGTGAGTGCCACCAGTACTACTCCGGCAA	65	+	chr3R	4815197	4815262	4815197..4815262	CG11970-RA,	FBgn0027503,	CG11970,	1	.
CG13022-RA	AGGCGGGAAATGTTTTGGGCAAGTACTCCTACTACGATGAGGCTGGCTACCATGAGCTGAGCTACAAGG	69	-	chr3L	16931600	16931669	16931600..16931669	CG13022-RB,	FBgn0036679,	CG13022,	1	.
CG14718-RA	GCCGAACCAGTCTTTGTCCCCAGAGCAGAGATCCTCAGATTGCGGGACAATGCAACTTGCTGAATG	66	+	chr3R	7528141	7528207	7528141..7528207	CG14718-RA,	FBgn0037939,	CG14718,	1	.
CG6138-RB	TGTTGAGCCAAACTAATTTCCCGGACAAACATGGTTGCATCCCCTTTGGACAAACGCACCCCTTGGAAA	69	+	chr2L	10570950	10571019	10570950..10571019				0	no match
CG17494-RA	GGATTCGGCTGCAACGAAATTGTCAGCCCCTAATGCGGAAAGTAAGGAAAAGCTTGTAGACGTTGAGGA	69	+	chr2L	22477745	22477814	22477745..22477814	CG17494-RA,CG17494-RC,CG17494-RD,	FBgn0040011,	CG17494,	1	.
CG31304-RA	CCGCGTCAGAGAATCGATGGTCTGATGGCTCTTTAGGCTTAGCCAGGCTTTATCCTCACCTGCGACTAA	69	-	chr3R	10923039	10923108	10923039..10923108	CG42788-RC,CG42788-RB,	FBgn0261859,	CG42788,	1	.
CG4054-RA	TGCCCTCAAGAGCCTGGATATGTCCTTGAATCTGGTCGAGTTTGTGCGGAATGACAGTTTCGAGGGCTT	69	+	chr2R	17817671	17817740	17817671..17817740	CG34368-RC,	FBgn0085397,	Fili,	1	.
CG7404-RA	GCTGGGCCAAGCAGATACCTGGCTTTATAGATCTGCCACTTAACGACCAGATGAAGCTTCTCCAGGTGT	69	-	chr3L	8177088	8177157	8177088..8177157	CG7404-RA,CG7404-RB,	FBgn0035849,	ERR,	1	.
CG14154-RA	GGGCATTCTTTATCTATTACATGCAACCAAATTTGTAGAAGTGAATTGGATTTTAAAGTAACGCCAGCT	69	+	chr3L	10635939	10636008	10635939..10636008	CG14154-RA,CG14154-RB,	FBgn0036093,	CG14154,	1	.
CG14142-RA	GCGGTTCCTCAATACGGCGTCCTTAAACGATGCATGATTGGTCTTCTGCTCTGGGACATCGAGTCAGCT	69	+	chr3L	11168187	11168256	11168187..11168256	CG14142-RB,CG14142-RC,CG14142-RD,	FBgn0036143,	CG14142,	1	.
CG33232-RC	TCGAAGAGTGCTCCTCATACGCGTAATGTGGCTGTAGGAGTTGCTCAGGATCTGATCAAGACGGTGCCT	69	+	chr3L	2497615	2497684	2497615..2497684	CG33232-RC,CG33232-RB,CG33232-RA,CG33232-RD,	FBgn0035347,	CG33232,	1	.
CG14806-RA	GGCGCATCCACATCATGTACAACATCTCCTGGTACCTGAAGAACTTCGACATACTCACCCTGGCTG	66	+	chrX	1775152	1775218	1775152..1775218	CG14806-RA,	FBgn0029594,	CG14806,	1	.
CG31018-RA	TGGCGCTTGAAACTGTTGAGTTTGCTCTGAAGTCAAATCCACGCAATGCACAGTTGATCAGGATGCAAA	69	+	chr3R	26335599	26335668	26335599..26335668	CG34041-RC,	FBgn0054041,	CG34041,	1	.
CG14180-RA	GGAGTTTCGCTTCCTGAGTGTGTTGGTATTCCGATTCTCTCTTGTAGACCTCAAGAACATGGCGGC	66	+	chr3L	9466180	9466246	9466180..9466246	CG14180-RA,	FBgn0036003,	CG14180,	1	.
CG10395-RA	TGGCACATGATGACAGTTTGCCTCACACGGGTGCTAAAAAAGGTAAAAGACGACGCAACAGTGATACGT	69	+	chr2R	1238534	1238603	1238534..1238603	CG10395-RA,	FBgn0033019,	CG10395,	1	.
CG15088-RB	TTCAATTTTATTGAAGGGTTTATATTGTATCCGTGTTCTCTTCTCTCCCCACTAACAGTTTTTGG	65	-	chr2R	14615679	14615744	14615679..14615744				0	no match
CG15022-RA	CAGGCTTTGCCATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGTTACCACGATCAC	65	-	chr3L	4460089	4460154	4460089..4460154	CG15022-RA,	FBgn0035547,	CG15022,	1	.
CG2543-RA	CTTGACGGAATCTCTGCTTCGCCATCAAGGTTTCCGCACGGGATTCTTCAGTTCTCCCCACATCC	65	+	chrX	12508067	12508132	12508067..12508132	CG2543-RA,	FBgn0030407,	CG2543,	1	.
CG4101-RA	CTTCAGCTTGCTAATCCGATACGGGCTTTATGTGGGTGCTCTCTTCCAGTTCGTTTGCATTTCGGCCGC	69	+	chr3L	16605740	16605809	16605740..16605809	CG4101-RA,	FBgn0025558,	CG4101,	1	.
CG1539-RB	CGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAAATGTCGAGACCAACTTTATCAGTCCGCCCGT	69	+	chr3R	26398436	26398505	26398436..26398505	CG1539-RD,CG1539-RF,CG1539-RC,CG1539-RB,CG1539-RE,CG1539-RG,CG1539-RK,CG1539-RL,CG1539-RM,CG1539-RN,CG1539-RO,CG1539-RA,CG1539-RH,CG1539-RI,CG1539-RJ,	FBgn0082582,	tmod,	1	.
CG2017-RB	GCGTGCTGACCGAGAATATGGCAATGAAGATTGGTCCGCTTCCCGATGGTAGCTTTCATCCCGTTACTG	69	-	chr3R	1684534	1684603	1684534..1684603	CG2017-RA,CG2017-RD,CG2017-RC,CG2017-RB,CG2017-RE,	FBgn0037391,	CG2017,	1	.
CG15528-RA	TTGGCAGAGCCCCCCAGAACTTTGTAGCTATTCAGCTGAGTGCATCCACGCTAGAGGATCACACG	65	-	chr3R	25875097	25875246	25875097..25875131,25875215..25875246				0	no match
CG11473-RA	GGGAAATCCCCGTGACTATACACTGAAACACAAAACAGGGACACACAATGATGCAATGCCATGAAGAAC	69	-	chrX	5522134	5522203	5522134..5522203	CG42492-RA,	FBgn0259994,	CG42492,	1	.
CG17331-RA	CAAGATGCGCAATGGCTACGATTTAAGTCCACGTGAATCGGCTCATTTTACTCGCAAGAATCTGGCCGA	69	-	chr2L	16731690	16731759	16731690..16731759	CG17331-RA,	FBgn0032596,	CG17331,	1	.
CG12058-RA	ATCGTCAGTGAGGCAAAGAGCAAGCTGTGGCGAGAAAATCACCCACAAAATCAGCAGCACCCTCA	65	+	chrX	9139063	9139128	9139063..9139128	CG42569-RA,	FBgn0260771,	CG42569,	1	.
CG9129-RA	AGGGTGAAGAAGGAGTTCTATTCACAGAACATAAACTGGGAGAGTAACGTCGAGTCCCATTTGTCGCGA	69	+	chr3L	1251227	1251296	1251227..1251296	CG9129-RA,	FBgn0035196,	CG9129,	1	.
CG15897-RA	CACCGCCATTCATTCCCGAGGACTTGTCCGTTTGGTTTAAGAAGCGCTTCGACAACGTTAGCGACTATT	69	+	chrX	6183339	6183408	6183339..6183408	CG15897-RA,	FBgn0029857,	wuho,	1	.
CG15356-RA	CCGTCAACATTATCAAGAATATACCAGCTAGTAGTTTAAACAACACATTGATCACACCGCTTCCC	65	-	chr2L	1977927	1977992	1977927..1977992	CG15356-RA,	FBgn0031377,	CG15356,	1	.
CG31510-RA	GCAGACCGGAATCTAGCATTGAACCGCAGAAAGTGTCTGTTGATGTAGAGACTCCGGTTGAGGAGCCGC	69	-	chr3R	20944203	20944272	20944203..20944272	CG31510-RA,	FBgn0051510,	CG31510,	1	.
CG8994-RC	CCGCGCACAACTCACGAGCACGTTGGTGTATCGATAGTGTGAGTAAACCGTGACTGTGACGTAAACAGT	69	-	chr2R	16555565	16555634	16555565..16555634	CG8994-RC,CG8994-RD,	FBgn0000615,	exu,	1	.
CG12289-RA	GCCATGTGCGACTATGTGTTCGTCACCAAGTATATAGCCGAGTCCAGAGGCTGGAAGTCACCGCTG	66	-	chr3L	11450759	11450825	11450759..11450825	CG12289-RA,	FBgn0036160,	CG12289,	1	.
CG9902-RA	GCAAGGAAGAGCTAGAGAATGTGGTTAGCGGGCCCAACGACATGATAGAGTGCAGCTCGATTATAGCCA	69	-	chrX	16438071	16438140	16438071..16438140	CG9902-RA,	FBgn0030757,	CG9902,	1	.
CG11698-RA	CGCCAAGGAAGCACAGCAACGGATCGAAGCTTTGCAAAAACTGGTGAGCAGGATTAAGATGCTGAAGCG	69	+	chr3R	4138615	4138684	4138615..4138684	CG11698-RA,	FBgn0037572,	CG11698,	1	.
CG9951-RA	ACAGCGGGAAACTAAAGCGAGAGAGGAGATCAGTCGCATTCAGCCCACGCTTAAACTGCACGAACG	66	+	chr3L	16857229	16857295	16857229..16857295	CG9951-RA,	FBgn0036671,	CG9951,	1	.
CG8079-RA	ACTCTGGGCCAAACAAGACTACTGTGTCATGTCCACGAGGGTAACAGTACCTGCGGTTTGTGCGAG	66	+	chr2R	11110297	11110363	11110297..11110363	CG8079-RB,CG8079-RA,	FBgn0034002,	CG8079,	1	.
CG31190-RB	CCCTCGGAAAACGATTTGATGAACAATCTGATAAACTCAACAAATCCGACCAGCGGTGATTGGTTCGCA	69	-	chr3R	13303310	13303379	13303310..13303379	CG31190-RA,CG31190-RB,CG31190-RC,	FBgn0261046,	Dscam3,	1	.
CG33045-RA	GCACGCAATCCTGCCTAACCACCCCTGAGTACAATCCCGTCTGGAGTAGTGATATGGTGAGCTACGACA	69	+	chr3L	216773	216842	216773..216842	CR33790-RB,CG1220-RE,CG1220-RF,	FBgn0063924,FBgn0063923,	Kaz1-ORFA,Kaz1-ORFB,	2	.
CG17717-RA	TGCAGTGCATGGATAATATGAATCAAGGCAGCACCGATCAGTTAACCGTCCAGGAGGTGTTTGTCGCCT	69	+	chrX	6484350	6484419	6484350..6484419	CG17717-RB,CG17717-RA,	FBgn0029877,	CG17717,	1	.
CG9538-RA	CTAGAATGGGGCGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCGATGCC	66	-	chrX	14679626	14679692	14679626..14679692	CG9538-RA,CG9538-RB,	FBgn0015010,	Ag5r,	1	.
CG1710-RA	ATAGCGTTACGCCATTCTAGTGCCTTTGGTCATATCTCTATGTGACGGACATCAGTTTCATTCATTTTT	69	+	chr4	395344	395413	395344..395413	CG1710-RD,	FBgn0039904,	Hcf,	1	.
CG11101-RA	ATCGCATTTACGAGCACCGAATTGTGTGGGACACCAAGCTCATGGACAAACACAGCGAACCCTTTGGAC	69	+	chr2R	3185924	3185993	3185924..3185993	CG11101-RA,	FBgn0003174,	pwn,	1	.
CG31157-RA	TGCTCAATCCCTTGATGAAGCGAAACATGAAACTCTGGCGACCCAAGATGACAAGTTTCTTGGCGGGCT	69	+	chr3R	8874281	8874350	8874281..8874350	CG31157-RB,	FBgn0051157,	CG31157,	1	.
CG7993-RA	ACGAGGTGCTGGACATGTTTGAACTGGGCATCAAGCGGTATCAGGCGATTTCCGAGTTTAAGAACGAGA	69	+	chr3R	14049996	14050065	14049996..14050065	CG7993-RA,	FBgn0038585,	CG7993,	1	.
CG33146-RA	AGACGTTTGCTGAGACCCAATACCATTCCCAACAACGAGCTATTGGACTTCCTCTCGCGAGTGCCAGAT	69	+	chr2R	14661029	14661098	14661029..14661098	CG15078-RA,CG15078-RB,	FBgn0034389,	Mctp,	1	.
CG10207-RA	ACGTCTTCTCCATATTCGCCGACTATCTTCTGCGCACGGATAAGATGAGTCGCACAAATGTCCGCAAGT	69	-	chr2R	10731540	10731609	10731540..10731609	CG10207-RA,	FBgn0016684,	NaPi-T,	1	.
CG16854-RA	AAGGATAGCTCACAGTGCAGAACCCTATACCTGAACTCCATACTCCAGGCTCTGATTGCAGCGCC	65	+	chr2L	11090134	11090199	11090134..11090199	CG16854-RC,CG16854-RB,	FBgn0032338,	CG16854,	1	.
CG7694-RA	CGAATTCCTGTCCTCTGTGTCGCTATGAACTGGAAACTGATGATCCTGTTTACGAGGAGTTGCGCAGGT	69	+	chr3R	14416243	14416312	14416243..14416312	CG7694-RA,CG7694-RB,	FBgn0038627,	CG7694,	1	.
CG7113-RA	GCACGGTTTCGAATCGCTTAACAAGTTTTTGCTTAAAAAGCTTTGCCGAGCACTAAGTAACCACCGCCT	69	+	chrX	17985310	17985379	17985310..17985379	CG7113-RA,CG7113-RB,	FBgn0021765,	scu,	1	.
CG17639-RA	CGGGCTAACAGTTCTTTAAATTAGTGTTACAGTAGCGAAAAAATATTTAATATTTAATATCAGTTGTGT	69	+	chr3R	8211248	8211317	8211248..8211317	CG17639-RA,CG17639-RB,	FBgn0038029,	CG17639,	1	.
CG7105-RA	GGGGAAGCCATGTTGCAAGCAAAAATGTTCTGGGTCCGAAAAAGGGGATACAATACAATAGTGTCGGAA	69	-	chr2L	7865772	7865841	7865772..7865841	CG7105-RA,	FBgn0045038,	Proct,	1	.
CG6187-RA	TCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCCGCGAATTTCGAGCCGCACCGC	69	+	chr2L	10481389	10481458	10481389..10481458	CG6187-RA,CG6187-RB,CG6187-RC,	FBgn0032256,	RluA-2,	1	.
CG10286-RA	GCTCCAGCGATGAACAGAGCAACTGGGATACAGATAGCGAGCATTCAGAGTCTGAGAGCGTGGCC	65	+	chr3R	2195750	2195815	2195750..2195815	CG10286-RA,	FBgn0037439,	CG10286,	1	.
CG16976-RA	GCACAAGCGCATGGGATCGAGACCGAAAAAGCCGAAATCTCATTACACACTCATCCAGGCTCACGTACT	69	.	.	.	.	.				0	no match
CG16800-RA	AGGGCAAGCACAACATCCACAAACTAGACGAGAACAAGAAAGAGAAAAAGTTCTACGATGAGGAT	65	+	chr2L	12967423	12967488	12967423..12967488	CG16800-RB,	FBgn0032462,	CG16800,	1	.
CG31221-RA	TGTCCCGGGGATGGTAATTGCATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGA	69	+	chr3R	15266453	15266522	15266453..15266522	CG31221-RA,CG31221-RB,	FBgn0051221,	CG31221,	1	.
CG9319-RA	AGATTTGCTCGACTCGGGAGTACTTTCCCTTCCAGAGAGGGCCAAGCTGTAAGACGCCAAGATGTG	66	-	chr2L	20750987	20751053	20750987..20751053	CG9319-RA,	FBgn0032881,	CG9319,	1	.
CG32543-RA	CAAGGAGGTCCAAATCGAGCTAATCGAGCAGGTCAGTGGTGTTCAAACAGAGCCAGATAGTCCGCCCAC	69	+	chrX	18719642	18719711	18719642..18719711	CG42450-RA,	FBgn0259927,	CG42450,	1	.
CG32626-RA	TTCAAGGTGAACCAGACGTGCTCCATTGCAGACATGAACGCCACATAGTCTGGTCCATGCGGTAC	65	-	chrX	13724936	13725001	13724936..13725001	CG32626-RC,CG32626-RE,CG32626-RF,CG32626-RG,CG32626-RH,	FBgn0052626,	CG32626,	1	.
CG9484-RA	GCTTCGGAGGAGGGATTCCAACCATTGCCATCTGTCACCATAAGACCTGCGGATGACTCCCATCTAC	67	-	chr3R	5540786	5540853	5540786..5540853	CG9484-RA,	FBgn0002431,	hyd,	1	.
CG10372-RA	ATGGTGATGATCAGCCTTCGAGCAAATCGCATGATGATCGTCGGACGTTTCGAGGGGGATTGCAC	65	-	chr2L	18707190	18707255	18707190..18707255	CG10372-RA,	FBgn0025608,	Faf,	1	.
CG7830-RA	GCCATCGCAGTATTCTTCTGCTTCGCCATGATCTCGGGTCAAATGTGGAATCATATCCGTGGACCACCG	69	-	chr2L	8307240	8307309	8307240..8307309	CG7830-RA,	FBgn0032015,	CG7830,	1	.
CG10486-RA	ACGAACTCCCGGAAACTCTCAGTGATGGCGCACAATTTGGGAAGAATCAAAGGATTTGGCACATGCCC	68	-	chr3L	5897711	5897779	5897711..5897779	CG10486-RB,CG10486-RC,	FBgn0035647,	CG10486,	1	.
CG5936-RA	GGTAATCGTCTATCTACCGAGCATCTTTCGTGGCGAACTGATCAAATGCATCCTTGGATCGAGTGACGT	69	-	chrX	18107833	18107902	18107833..18107902	CG33639-RA,CG33639-RB,CG33639-RC,	FBgn0053639,	CG33639,	1	.
CG8511-RA	CGGAATACGCGTAGAGAACATTGGCTATCTGAAGAAGATCATCGTTCCCAAGACCGAGACCTCCGAT	67	+	chr2R	8295631	8295698	8295631..8295698	CG8511-RA,	FBgn0033730,	Cpr49Ag,	1	.
CG14689-RA	CTGGCCCACAGTTCGCTACTCAAACTTTTCGCTTGGCTACGATCCGTACCACATCATTCGCCAGC	65	-	chr3R	6535783	6535848	6535783..6535848	CG14689-RA,	FBgn0037826,	CG14689,	1	.
CG17706-RA	GGTCGCCACGATTCGCACCGAATGTCATTTTGCGGGTGATTTTGCGGAAGAAATCTCACACCGATACTT	69	-	chr2R	617939	618008	617939..618008				0	no match
CG7956-RA	GCAGAAGGATAGCATGTGCAAAACCACAGAGGATGTGCTAACCATTTCCATAACCTCCGTGACGGACCA	69	+	chr3R	17352426	17352495	17352426..17352495	CG7956-RB,CG7956-RA,CG7956-RC,CG7956-RD,CG7956-RE,	FBgn0038890,	CG7956,	1	.
CG8250-RA	GCACAGGACTCCCACACATTTTTGTACCCTGATGACATTACCTTGTGTACCTAAAGCCCACAACCTGAA	69	-	chr2R	12514151	12514220	12514151..12514220	CG8250-RA,	FBgn0040505,	Alk,	1	.
CG10295-RA	ACGAGATCCTTGTGATGCGGGAGAACAAACACCCAAATGTAGTCAACTATCTTGACAGCTACCTCGTGT	69	+	chr3R	2184352	2184421	2184352..2184421	CG10295-RC,CG10295-RA,CG10295-RB,CG10295-RD,	FBgn0014001,	Pak,	1	.
CG11123-RA	GCCAGGAACGAACTTTTCAGTCCAGCGTCTCCTTCAGCACATCAAAGAGGTGCCTGATTTCGAGTCCGT	69	+	chr2R	3329531	3329600	3329531..3329600	CG11123-RA,	FBgn0033169,	CG11123,	1	.
CG31764-RC	GGCTCTGGTTATCCCTTCCTTCAGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGAT	69	-	chr2L	12409456	12409525	12409456..12409525	CG31764-RC,CG31764-RA,CG31764-RB,CG31764-RF,	FBgn0043841,	vir-1,	1	.
CG4983-RA	CGCCACCGGTATTCGTACCCAAGTCCGAATATGTACAACCATCAGAGGAGTTGGTTTCCCGGAAGAGCA	69	+	chr2L	11652760	11652829	11652760..11652829	CG4983-RA,	FBgn0032371,	CG4983,	1	.
CG4592-RA	CCAAGTCATGTTGCGTAACAGGCTGATAGATGGAGTCAGGCGAATAAAACCCATACTTTGCGGGGGGCA	69	+	chr2L	9921733	9921802	9921733..9921802	CG4592-RA,	FBgn0032162,	CG4592,	1	.
CG12193-RA	GCGTTCGTGAACATAGTAATGCTCATCCTTCTGCCGATCTCGATAAGCATCGAGTACCTCCACCGATTT	69	+	chr2L	1520828	1520897	1520828..1520897	CG12193-RA,	FBgn0026398,	Or22a,	1	.
CG2827-RA	AGGTGGAGGATGAATACATTCGTTTTTGAAAAAGACAATGATTTTATACTTTAATAAACACTACAATTA	69	+	chr2R	19829559	19829628	19829559..19829628	CG2827-RA,	FBgn0023477,	Tal,	1	.
CG17044-RA	CTCCTGGCGCATCGAGAACAAATTCACCTATCCGGATGCTAAGTTCGGAACGCACACAGTGGCTG	65	-	chr3R	9231552	9231617	9231552..9231617	CG17044-RB,	FBgn0038151,	yellow-e2,	1	.
CG10545-RA	AACTGATCGTTTGGGACTCGCATACCACGAACAAAGTCCATGCCATTCCACTGCGATCCTCGTGG	65	+	chrX	15756038	15756103	15756038..15756103	CG10545-RB,CG10545-RA,CG10545-RC,CG10545-RD,CG10545-RE,CG10545-RF,	FBgn0001105,	Gbeta13F,	1	.
CG18654-RA	TCTGCGTCAAGTTCCACCTGGAGCGTGAGAAGAACCCGCACAAATTCAACAGCCGCATGAAGAAC	65	-	chr2R	3725173	3725238	3725173..3725238	CG34361-RG,CG34361-RE,CG34361-RF,CG34361-RH,CG34361-RI,	FBgn0085390,	Dgk,	1	.
CG13367-RA	ACTTGATGTACTGTAGTACCAACTGAACTCAATCAGCAATTAATGAATAAAATACAATTTTGTAATTAT	69	+	chrX	540349	540418	540349..540418	CG13367-RA,	FBgn0025634,	CG13367,	1	.
CG13345-RA	CTATGTGCTGTGCTGTTGTGTCAAGGATTTCCTGAGGTCCCTAACAGAGCCTCTCATTCCCACCAGCCA	69	-	chr2R	9744452	9744521	9744452..9744521	CG13345-RA,	FBgn0086356,	tum,	1	.
CG1935-RA	CTTGGACTAGGAGCCCTAACGATGGTCACCATACTCGTCCTGTTCGTGGAATCTCGTTACGCGGC	65	-	chr3L	1802595	1802660	1802595..1802660	CG1935-RA,	FBgn0025820,	JTBR,	1	.
CG33009-RA	ACGGAGATCATCAAGAACAATGCTCAAGTTCCAGGTCCATTCTCCGGGCAAGGTCATACTCCATGGCGA	69	-	chr2R	8522881	8522950	8522881..8522950	CG33672-RA,CG33671-RA,CG12372-RA	FBgn0061360,FBgn0061359,FBgn0028683	CG33672,CG33671,spt4	3	.
CG1511-RA	GGGCTACCGTTTACCAGCTCCGATGGATTGTCCAGAAGCCCTTTATCAGCTAATGTTGGATTGCTGGCA	69	+	chr4	640496	640565	640496..640565	CG1511-RA,CG1511-RB,CG1511-RC,CG1511-RD,CG1511-RE,CG1511-RF,	FBgn0025936,	Eph,	1	.
CG4400-RA	CCTGCGCAAGTACCGACTGCAGAATATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCC	65	-	chrX	12802979	12803044	12802979..12803044	CG4400-RA,	FBgn0030434,	CG4400,	1	.
CG14074-RA	CGTCTCAATCGGATAGCACAAATCAACAAGTGGACGATAGCACAGCTGTCACTACAGTGGACCTGACCG	69	+	chr3L	18860372	18860441	18860372..18860441	CG14074-RA,	FBgn0036818,	CG14074,	1	.
CG13313-RA	AGCAGTTTGGCATTAGCTCCACTGTCGAAGGCTAATGAATCCCTGATCCTGGCGAATGATACCCTCCTC	69	+	chr3L	8952169	8952238	8952169..8952238	CG13313-RA,	FBgn0035941,	CG13313,	1	.
CG6767-RA	AACCAGAACACCGTTAGCAAGCCACAGCAAAATGAAAAGAGAAAAAAACCCACTTTAATAGCAATTTGT	69	-	chr3L	9677349	9677418	9677349..9677418	CG6767-RA,CG6767-RB,	FBgn0036030,	CG6767,	1	.
CG1234-RA	TCCCACGAGCTGTTTACGCAATTCGACAGCACTCAGATGGCTTTCAATCCGACAATACCGCTGCCAAAA	69	-	chr3R	3070120	3070189	3070120..3070189	CG1234-RA,	FBgn0037489,	CG1234,	1	.
CG4599-RA	AGAACGGCAATATGCTATTCAAGTCGGGTCGGTATCGCGAGGCACACGTTATCTACACGGACGCC	65	+	chr2L	16506258	16506323	16506258..16506323	CG4599-RA,CG4599-RB,	FBgn0032586,	Tpr2,	1	.
CG31274-RA	ATCCCTGCCTAACGGAGGTCCTCAGGAATTGTGCCAACATTCAGTCGCTGGAGAGCTTGAACTACGAAT	69	.	.	.	.	.	CG31447-RA,CG31274-RA,CG31274-RB,	FBgn0043069,FBgn0051274,	MESK4,CG31274,	2	.
CG12912-RA	GCAGCAGGATACGAAAACGAGGATGACAACGACCACAGGCAAACGCGGAGGACACAGATACAGAAGC	67	-	chr2R	6121420	6121487	6121420..6121487	CG12912-RA,	FBgn0033497,	CG12912,	1	.
CG17209-RA	GCCAGAATTAAGCTACTCGGCCTACACATTGATCTGGACACAATTGTATTTAGCATTCTGAAGTCGCGC	69	+	chrX	15662562	15662631	15662562..15662631	CG17209-RC,	FBgn0030687,	CG17209,	1	.
CG10149-RB	ATTCGGGCCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACACAAACGTTCCCTGGCC	65	-	chr2R	10638425	10638490	10638425..10638490	CG10149-RA,CG10149-RB,CG10149-RC,	FBgn0028689,	Rpn6,	1	.
CG12842-RA	TGCACCAAGAATTTAATCAGAAACGACGCCTTGAATGTGCACATTGGCACCGGCAAGTCTGACATCCGC	69	+	chr2R	2927069	2927138	2927069..2927138	CR12842-RB,	FBgn0033131,	CR12842,	1	.
CG13320-RA	GCAAGGCCCTGAAAGAATTGGCCGAGAAAAACTGCGAGAAACGTGTTAGGGAGTACATGAAGCGCCAGA	69	+	chr2R	8826599	8826668	8826599..8826668	CG13320-RA,CG13320-RB,	FBgn0033785,	Sans,	1	.
CG8331-RA	GCGACCCTACTTCCTGAAACATCACGAATCCGTTGACAGGATCATCGATGATGGCATGAAGAAAGCCGC	69	+	chr2R	10060159	10060291	10060159..10060188,10060251..10060291	CG8331-RA,CG8331-RB,CG8331-RC,CG8331-RD,	FBgn0033906,	CG8331,	1	.
CG2186-RA	AGCAACACAAACTAGGACCCAAATGTGCATACTATGTGCATGCTCATAGCCCTTAGCCTATGTAATCAA	69	+	chrX	10757185	10757254	10757185..10757254	CG2186-RA,	FBgn0030243,	CG2186,	1	.
CG3717-RA	GCCGCACCGAAACAAGAAACCAGGGTCAAAACAAAGCACTCATCAATTAAACAGCACTTTAATCCACCA	69	-	chrX	2043558	2043627	2043558..2043627	CG3717-RA,	FBgn0013432,	bcn92,	1	.
CG1167-RA	CGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCAGTGCAACATCGACGATGTGCCAG	68	+	chr3L	4139914	4139982	4139914..4139982	CG1167-RA,	FBgn0003206,	Ras64B,	1	.
CG11007-RA	CGGAGAGGATGAAGCATGCGACCTGGACAGTCGTGAGGTGGAAATCTTGTTCTTCCTGCTAATCGTGGT	69	+	chr2R	15390817	15390886	15390817..15390886	CG11007-RA,	FBgn0034455,	CG11007,	1	.
CG13708-RA	ACCATCATCGCCAGTTACAGTTGCAAGCCAATCTCCTGAAGTAGCCATAGTGACACCGTCAGCACCG	67	-	chr3L	4830489	4830556	4830489..4830556	CG13708-RA,	FBgn0035577,	CG13708,	1	.
CG14891-RA	TGAGTGGCTCGCCCAATCTGTCCAATGAGGTCGTTGCGAAGTTGACCAAATCGCTTAGCGGACTG	65	+	chr3R	12398585	12398650	12398585..12398650	CG14891-RA,	FBgn0038445,	CG14891,	1	.
CG10585-RA	TATAAGCCAGGAACCTTCCAGCGACCATCTCTCAGCGTTGGAGTGGATTTCAACGAGCACGACGT	65	+	chr3L	21022421	21022486	21022421..21022486	CG10585-RA,	FBgn0037044,	CG10585,	1	.
CG6854-RA	CACTCCGCTCGTACCAGAGGACGATGACTACCACTACTTGCTCAGCCTACATCCGTACATGAAGCAGCT	69	+	chr3L	15103469	15103538	15103469..15103538	CG6854-RA,	FBgn0262707,	CTPsyn,	1	.
CG10238-RA	TCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGGAAATCGCTACCCAATTCACGACTACAGGCA	69	-	chr3R	20951672	20951741	20951672..20951741	CG42503-RA,CG10238-RA,	FBgn0260229,FBgn0039280,	CG42503,Mocs2,	2	.
CR33356-RA	GGGCGCTCGTACGCGTTTAATACTTAAATGGTGGACCGCTTGGGAACACCGTGTGCTGTTGGACTAG	67	-	chr2R	15652538	15652605	15652538..15652605	CR33356-RA,	FBgn0053356,	5SrRNA-Psi:CR33356,	1	.
CG2174-RA	CCGAGTGCAGGAATTGAACTCCCACAGGCTCTGAGTCCAATCCTCTGGTCCCCTATTCATATTTCGATT	69	+	chrX	10857868	10857937	10857868..10857937	CG2174-RC,CG2174-RD,	FBgn0030252,	Myo10A,	1	.
CG15732-RA	CCGGACGAAAGGCTAACCACAATTGCGCTGATCAGTAACTTGGCCTACTGGAATCACAAGCACCCGAAT	69	-	chrX	12269976	12270045	12269976..12270045	CG15732-RA,	FBgn0030385,	Ir11a,	1	.
CG17177-RA	CCAATGGATACAACTATTTTTCTTGACTTGGAAAAAAATGCAGAAACCTTAGAGAAACTCGCCGAAACG	69	-	chr3L	14691354	14691423	14691354..14691423	CG17177-RA,	FBgn0036440,	CG17177,	1	.
CG15602-RA	TGCCGCATACGAAAAGCTACGATAAGAAAGATCTGCTACTGTCCACCGACCAAAGAAACGATCAGGAGA	69	+	chrX	15694319	15694388	15694319..15694388	CG15602-RA,	FBgn0030694,	CG15602,	1	.
CG8309-RA	ATCGCGGTGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGCTCCCAATCTTCCATTG	65	-	chr2R	10051566	10051631	10051566..10051631	CG8309-RA,	FBgn0033902,	Tango7,	1	.
CG31733-RA	CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACATGGTGATTGCCTCCCTTGGC	69	+	chr2L	15293032	15293101	15293032..15293101	CG31733-RA,	FBgn0011239,	ms(2)35Ci,	1	.
CG12994-RA	TCACTACTACAATGGACGCTCCTATGTGGGCATCAACGAGGAGATCATGTGGGTAAGCATCGGCATGGG	69	-	chrX	17316982	17317118	17316982..17317037,17317104..17317118	CG12994-RA,	FBgn0040877,	CG12994,	1	.
CG8233-RB	GGTGCAGTGACGACCACAGCTTCCAGTAGTCCCATTATGGTTGATCCAGCCACAGGATCCAAGGTT	66	-	chr2R	10036325	10036391	10036325..10036391	CG8233-RA,CG8233-RB,CG8233-RC,	FBgn0033897,	Rcd1,	1	.
CG3874-RA	TGGCTTGTCCTCCTTCATGATTACGGTGGTAAACAAGACGGTGCTTACCTCCTACCACTTCCCCTCGTT	69	-	chr3L	17425797	17425866	17425797..17425866	CG3874-RA,CG3874-RB,CG32174-RC,	FBgn0042641,FBgn0052174,	frc,CG32174,	2	.
CG5016-RA	CGCCGCAAAGTAAATGAGCTTTTGATAATTGCAGGCACAGAATTCAATAAAACATTTACTTAATTGTTT	69	-	chr3R	21656447	21656516	21656447..21656516	CG5016-RA,	FBgn0011669,	Mst57Db,	1	.
CG17172-RC	AGTGCCTCCTTCAAGCAGTCGTGCAACCTATCAACACACCGGAAGAAAAAGCACGCACTGAGAGG	65	+	chrXHet	86049	86114	86049..86114	CG17172-RB,	FBgn0039946,	ATbp,	1	.
CG2248-RA	CCCAACTCTTGCTTTTGTTTCGTTTCCGAGTTCTGAGTTTGTTTCGAGTGTTCTGTAATTCATAATCCA	69	-	chr3L	1301515	1301584	1301515..1301584	CG2248-RA,	FBgn0010333,	Rac1,	1	.
CG32377-RA	TGGTCTACCGACAGCCAGAGTTTGATGTAGAACACCACACGATCATGTCTGTGCGTCCACCCTCC	65	-	chr3L	7659614	7659679	7659614..7659679	CG42734-RU,	FBgn0261788,	Ank2,	1	.
CG7730-RC	GTTCGGCGGAAAATTCGTTGAGCATATCGGCAATCTGGCTAGCTTTACGGACGTTTTGGAGGCCATGGC	69	+	chr3L	17022312	17022381	17022312..17022381	CG7730-RC,	FBgn0036689,	CG7730,	1	.
CG6198-RA	GAAACGAACCTCGGACTTTTCCCAGTTTATGGCGCAAAAGGGCTGTACCTACGGTGAGCACAAATGGGT	69	+	chr3R	20012796	20012865	20012796..20012865	CG6198-RA,	FBgn0029503,	CHORD,	1	.
CG6907-RA	GGACTCCATGATGCTCTACAATGTCAAGACTACCTTGTGGGACGATAGCCCCAAGCATCTGGACATCGT	69	+	chr2L	5524861	5524930	5524861..5524930	CG6907-RA,	FBgn0031711,	CG6907,	1	.
CG6816-RB	AGTGCTAGCTTAATGTCCAAACAACAAACAACAAAACAAACTGTGGTTTAGTCTTACAAGCACACATCA	69	-	chrX	18582620	18582689	18582620..18582689	CG6816-RB,	FBgn0010383,	Cyp18a1,	1	.
CG3252-RA	CCTGCAGAGCACCATTGTCACCATCATTTGCGATCAGTTCAAGGGATGGAAGTACTGGAAGGTGGCACT	69	-	chrX	5300407	5300476	5300407..5300476	CG3252-RA,	FBgn0029762,	NAAT1,	1	.
CG13418-RA	CCGAAAACTCTTAGTTGCTAGCAATGTCCGTGTAAATAGTCCTAGATTAATGAAAATAATCATGCTCGA	69	-	chr3R	17602955	17603024	17602955..17603024	CG13418-RA,	FBgn0038903,	RpI12,	1	.
CG2229-RA	TCTCGTACTAAGAGCTTAGTGTTTTTCTACTAATAGCTTAGTGTTTTCTTTTCCGTTTATCTTTTTGGA	69	-	chr3R	26312763	26312832	26312763..26312832	CG2229-RA,	FBgn0039777,	Jon99Fii,	1	.
CG2887-RA	TCGGGTAGGAACGGCGTTGATGGGGTACAATATGACAGAATTCTCACTGTCAAGATACCTCCGGGCTGT	69	-	chrX	10371820	10371889	10371820..10371889	CG2887-RA,	FBgn0030207,	CG2887,	1	.
CG3119-RA	ACGCTTTGGATGGAGACACGAAGCCGAAGTTTATGCCCCTGGATCTGGAGAACTATATGTCGGATGCGA	69	-	chr2L	2835307	2835376	2835307..2835376	CG3119-RA,	FBgn0031466,	CG3119,	1	.
CG1893-RA	CAACGAGGAGATCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACCGATG	65	-	chr3L	3045052	3045117	3045052..3045117	CG1893-RA,	FBgn0035390,	scramb2,	1	.
CG17598-RA	TTACACTCCACACGAAAGGACAAATTCAAAACATTCAAAGTTTACATAATTTGCTTATGTACGCCCCCA	69	-	chrX	21938524	21938593	21938524..21938593	CG17598-RA,	FBgn0031194,	CG17598,	1	.
CG15550-RA	CCATACCCACCAAAGTGCTGATCATCTCCAGCGTAGTCCTGATCACTTGTATTTGGATAGGCTGCGCCT	69	-	chr3R	26762645	26762714	26762645..26762714	CG15550-RA,	FBgn0039811,	CG15550,	1	.
CG13492-RB	ACGAGGATCGCTATTGCCGAAAGAATCCCGCTTTGTGTTTCACCTGCAAGTCGAACGAGTGCAATGA	67	-	chr2R	17709405	17709472	17709405..17709472	CG13492-RD,	FBgn0034662,	CG13492,	1	.
CG8869-RA	CTTCCGCCAGCACTCGGACTACAACACCAACAACCTGAACAACGACATCTCGCTGATCAACACCC	65	-	chr2L	4952702	4952767	4952702..4952767	CG8869-RA,	FBgn0031654,	Jon25Bii,	1	.
CG8006-RA	GCTCCACATTCAATCGGGATGCACCTGACAGCGGAAGAACCCATTCCTCCAGTTCCTTATCCCAAGAGA	69	+	chr3L	8205662	8205731	8205662..8205731	CG8006-RA,	FBgn0035857,	CG8006,	1	.
CG13003-RA	CACTAACAAATAGTTACGTTATGTAGAGCTGGTCATATAAGAAATAAACCCCGATTTGGTCCTGCTGCT	69	-	chrX	16739388	16739457	16739388..16739457	CG13003-RA,CG13003-RB,	FBgn0030798,	CG13003,	1	.
CG15541-RA	CCTGTGCCTGCTTATCTTTAACGTCTTCATGGTGATGAACTTCTTCCAGAGCATCGCGATTTGCACGGG	69	+	chr3R	26475061	26475130	26475061..26475130	CG34432-RA,	FBgn0085461,	CG34432,	1	.
CG8667-RA	GCACAGCCTAAACGATGCATTTCAATCGCTTCGAGAGGTCATACCGCACGTGGAGATGGAGCGAC	65	+	chr2L	21339680	21339745	21339680..21339745	CG8667-RA,	FBgn0023091,	dimm,	1	.
CG7785-RA	TGGAACAGTCACTTCTTTAGATAGTCCACACAAAAGCCTTGAACAAATTAGCAGCATGAGAACAAAGCA	69	+	chr3R	13848529	13848598	13848529..13848598	CG7785-RA,	FBgn0038564,	CG7785,	1	.
CG14583-RA	AAGATGGCAGGGAGATTATTGCCCGCAACGGCTCACACCAGAAAACAAAAGCACAATCGGTGGAG	65	-	chrX	21302739	21303038	21302739..21302753,21302987..21303038	CG42343-RC,CG42343-RF,	FBgn0259245,	CG42343,	1	.
CG13283-RA	CGCCTTTGCCGAGACCTTTGTGCTGGACTACTTCGGATTGAATCCACACAGGGTACTCTTCTATGCGGT	69	-	chr2L	16835425	16835494	16835425..16835494	CG13283-RA,	FBgn0032613,	CG13283,	1	.
CG14035-RA	TGCCGCTGGAACCTCCGCAACCTAAATCCTATGTGATTTACGATGACGAAGAGGAGTTCGGTCCTTCGA	69	+	chr2L	5103443	5103512	5103443..5103512	CG42768-RH,CG42768-RI,	FBgn0261836,	Msp-300,	1	.
CG31806-RA	TGCATCTCGAGGATGCCTTTAAATTCAAAAATTCGATGCAAAGCTTTCACGTGTCGCCCACTGCTGAAT	69	+	chr2L	16985234	16985303	16985234..16985303	CG31806-RA,	FBgn0051806,	CG31806,	1	.
CG8717-RA	TTCGTGAACTAAGCCCTTGCGTACGGGACCATCTCTAGTCGAAAGTGCCATCTCTACGCCCTCGA	65	-	chr2R	3969692	3969757	3969692..3969757	CG8717-RA,	FBgn0025469,	slv,	1	.
CG6342-RA	TGGTGGAATCCTCAACTACATGATTCGCAAAATGCTCTCTTAAGCAACTCATCTTATTTTGTTTTTATA	69	-	chr3R	6234460	6234529	6234460..6234529	CG6342-RA,	FBgn0024957,	Irp-1B,	1	.
CG8950-RA	AGAGCATGAATCTACGCTTGGTCTGCAGCATGAAGTGGCATTCAACCTGCACCTCATCTACCGAGCC	67	-	chr2R	12947502	12947569	12947502..12947569	CG8950-RA,CG8950-RB,	FBgn0034186,	CG8950,	1	.
CG17219-RA	CGGAGAAAGTACAACCACTGGATAACCTAATTTCGGCAATGGATTTCTATGAGCTTAACGCCAAGGAAA	69	+	chr2L	3029555	3029624	3029555..3029624	CG17219-RA,	FBgn0031494,	CG17219,	1	.
CG1520-RA	ACCGAGTGTTTCTTCAATATGTGGGTGAGTTTTGCAAACCCCGTTCAGACTACTGTGCCAAAAACTTGA	69	-	chr3R	24650813	24650882	24650813..24650882	CG1520-RA,CG1520-RB,CG1520-RC,	FBgn0024273,	WASp,	1	.
CG15269-RA	GCCTTCAATATGCATGTCCGGATTCATACCGGCGTGAAACCCCACAAATGCAACGAGTGCGGAAAGAGA	69	+	chr2L	15112338	15112407	15112338..15112407	CG15269-RA,	FBgn0028878,	CG15269,	1	.
CG14029-RA	TCCTCCTACCTTAATGTTTGTCGTTCGCCATTTATTTATGTTTTTTGCCGCTTCGGTCACCCGTGTGGC	69	+	chr2L	5310615	5310684	5310615..5310684	CG14029-RA,	FBgn0016076,	vri,	1	.
CG33111-RA	TCGCAACTCTAAAATATGCGTGGATCTGCACTCGTCCCGTGGAGTTGATGTTTGATCCTGTTCCTGACA	69	-	chr3R	19627764	19627833	19627764..19627833	CG33111-RC,CG33111-RB,CG33111-RA,	FBgn0053111,	CG33111,	1	.
CG4663-RA	GCGAAGTGTGTTTGCCCAGTTTTGGACCACGTTTGCCATATTCCGCGGTCTAAACTGGATGTACAGAAA	69	-	chr2R	9116792	9116861	9116792..9116861	CG4663-RA,	FBgn0033812,	pex13,	1	.
CG2694-RB	GGACTGCTTTCAGAAGAAAACACCAGACTCTGTCAAGGAGCCCATTGATCTAAGCGAGCTTCCCAGCCA	69	+	chrX	2610231	2610300	2610231..2610300	CG2694-RA,CG2694-RB,CG2694-RC,	FBgn0024991,	CG2694,	1	.
CG17010-RB	CCGCAGATCAAGCTCCTGTGAAACCCGTGGAGACTGCTAATGAGCCACCTGCCAACAAAGCATAACATT	69	+	chr2L	12357814	12357883	12357814..12357883	CG17010-RA,	FBgn0032424,	CG17010,	1	.
CG8400-RB	AACAATCCCTACCTCAGGAGCCGTCCGAACAGGAAACGGGGACTTCAAAGATCCGAGTGCGTAAG	65	-	chr2R	11912746	11912811	11912746..11912811	CG8400-RA,CG8400-RB,	FBgn0034068,	casp,	1	.
CG14564-RA	CCGCCCCAGGGTTCCCTTTAATCTGCCCGGTGAAGTTCAACCCAAGATCGAGACGGAACCACTGA	65	+	chr3L	21750390	21750455	21750390..21750455	CG14564-RA,	FBgn0037131,	CG14564,	1	.
CG6892-RB	AGGCTGTTTTTCAGTAATATTGGGGTCAGCATCTCCTGAAAATTACATACAATATGGTTTCAAAATTGT	69	+	chr3R	20623121	20623190	20623121..20623190	CG6892-RA,CG6892-RB,	FBgn0039225,	Ets96B,	1	.
CG6803-RB	CAACTTATGAGTTCCCATTTGCAACATCAACATCGCACACTCAATGGGCTTCATAAATTGTTCCTTTTT	69	-	chr3R	10996603	10996672	10996603..10996672	CG6803-RD,CG6803-RE,CG6803-RB,CG6803-RF,CG6803-RH,CG6803-RJ,CG553-RL,CG553-RM,	FBgn0038294,	Mf,	1	.
CG32491-RI	TCGGGTGGTCACCAATGTAGTTGAAGGTGTGCACAAAATAGTACTGGAATCGTGCCATCACACCTGCCT	69	-	chr3R	17182337	17182406	17182337..17182406	CG32491-RI,	FBgn0002781,	mod(mdg4),	1	.
CG10956-RA	GCCAAGGACTTCTCGTAAATGCCATTTTCTTCAATTTGAGTTGGGAGCGGACATTCAATCCGGAGGCCA	69	-	chr2R	13011173	13011242	13011173..13011242	CG10956-RB,	FBgn0034195,	Spn53F,	1	.
CG32416-RA	ATGCACATATATCGCCATTAGATAAAGAAGTAGGTATGCATCAACCGAAACAACAATGGATGTGA	65	+	chr3L	5796490	5796555	5796490..5796555				0	no match
CG7945-RB	TCGAAAAATCAACAATATTTTTGCATCGGGCCAAAGGTGCATTAAAACCGGAGCCTCAAGTCTCGGGCG	69	-	chr3L	15516936	15517005	15516936..15517005	CG7945-RB,CG7945-RA,	FBgn0036505,	CG7945,	1	.
CG17261-RA	AAACCTTCACAGGACCAACACAACAAAATCATTCTACTCAAGCTATTGAATCTATTTGGATCGGCACAC	69	+	chr2L	3042922	3042991	3042922..3042991	CG17261-RA,	FBgn0031501,	CG17261,	1	.
CG18179-RA	GACTCTGGTGGTCCACTCGTTACCCATGACAACGCTCGGCTAGTGGGAGTGATTACCTTTGGCTC	65	+	chr3L	9633042	9633107	9633042..9633107	CG18179-RA,	FBgn0036023,	CG18179,	1	.
CG7259-RA	CCCGTTCGCGAAACAACTTCCGACAAAACTTCCTGGGAAGACCATCTGCCACTGGTAGCTACTCAGACT	69	+	chr3L	15293513	15293582	15293513..15293582	CG7259-RB,	FBgn0036491,	Best4,	1	.
CG8394-RA	GCGATTGGGGTTGGTCCAAGGTTCGATTTAGCATCGACATGGAGAACTTTCCGATCTCACTGGGCGTCA	69	-	chr2R	10087148	10087217	10087148..10087217	CG8394-RA,	FBgn0033911,	VGAT,	1	.
CG2910-RA	ACACACATGATGCACACATACAGAGACAGAAGCAGAACCGAGGAGACTTCACCCACACCTCATGACCCA	69	+	chr2R	3853000	3853069	3853000..3853069	CG2910-RA,	FBgn0027548,	nito,	1	.
CG17753-RA	AGGGCCACCTTTAGATTTGTGGATCCAGTGCTAGAGGTCTGGGACATAATCGGAAGGGCTGTCGTCCTA	69	-	chr2R	6009390	6009459	6009390..6009459	CG17753-RB,	FBgn0010531,	CCS,	1	.
CG12825-RA	GGGAATACACATTTCGGCGCTGCAGATCTTGGGAAGCGTGGTCCTCATCGTTGGAGCCATAAAGCAAAA	69	+	chr2R	3676941	3677086	3676941..3677005,3677081..3677086	CG12825-RA,	FBgn0033221,	CG12825,	1	.
CG31830-RA	ACAACAACGGTAATTAACCTGTGCATGTTAATGAACTTCAAACTGCAAACTCCTACTCCACTGCACTGT	69	+	chr2L	15287350	15287419	15287350..15287419				0	no match
CG6225-RA	GGCCTTCTACTGGATGATGAACCAAACGCGTCACATTCGGGAGTATCTGCCTGAGGATGAGTACCGCTC	69	+	chr3R	8486046	8486115	8486046..8486115	CG6225-RA,CG6225-RB,	FBgn0038072,	CG6225,	1	.
CG18681-RA	GCAACCACGAGGGCTACAACTCCCGCACCATGGTCAACGACATTGCTATTATTCGCATCGAGTCC	65	-	chr2R	7233180	7233245	7233180..7233245	CG18681-RA,	FBgn0010425,	epsilonTry,	1	.
CG32573-RA	TCGCTCCGATCGCGAGTACATCTACACGACCATAACGGACGAGTGGAACTACGGTCTGAATGGGC	65	+	chrX	16546761	16546826	16546761..16546826	CG32573-RA,CG32573-RC,CG42512-RA,	FBgn0052573,FBgn0260238,	CG32573,CG42512,	2	.
CG4945-RB	CCGGCACTCGAGCTACGCTAATCTCCCATATGCTTCTCAAGTTAAAGACAGTGCCTACGGATCGGTCGA	69	+	chr2R	12457373	12457442	12457373..12457442	CG4945-RB,CG4945-RC,CG4945-RA,	FBgn0034137,	CG4945,	1	.
CG7200-RA	TCTCGAGTGCTTATGGAAGATCACCCGGACTCTAACAGAGGATCCGACTATCCAGTGTAGTCCCCTCCA	69	-	chr2L	18157254	18157323	18157254..18157323	CG7200-RA,	FBgn0032671,	CG7200,	1	.
CG8360-RA	GGACAGGGTGCAATCCATGTGCAATAGTTTATGTGACATCCCATTTATAATGTTCTGTAAACCCACC	67	+	chr2L	8214027	8214094	8214027..8214094	CG8360-RA,CG8360-RB,	FBgn0032001,	CG8360,	1	.
CG7218-RA	GGCCTGCAAGCTAATGAAGGAACATCAGACCGAGCGCAACAGTTCTACACCGAGTAGCATGACCAATGT	69	-	chr3R	13988101	13988170	13988101..13988170	CG7218-RA,	FBgn0038569,	CG7218,	1	.
CG14949-RA	AACGCGTGGATCTGACCTTCTACGACACGCACAGCAACAAGAGTCACATTGACCTGGGCAACATC	65	-	chr3L	2642742	2642807	2642742..2642807	CG14949-RA,	FBgn0035358,	CG14949,	1	.
CG32244-RB	TGCATCCGAACCGACGACTATCCGCTGTAAGATTCCCGTAGCTAGTTGGTGAGCGGTACTCCCAG	65	-	chr3L	4504364	4504429	4504364..4504429	CG42576-RC,CG42576-RB,CG42576-RE,	FBgn0261526,	NT1,	1	.
CG3764-RA	GCCGTCTGCTGAGCTAGGACATTGCCAAACATTTTATCACTCAACGTTTCAAAGAGCTCTTCTCATGCA	69	-	chr3L	16988430	16988499	16988430..16988499	CG3764-RA,	FBgn0036684,	CG3764,	1	.
CG4694-RA	TGCGCGACTCGAATGACTCGCATGCAGATAATCAAGGACATGTACTCTAAACAGGGCACGTTAAGTCAA	69	+	chr2L	16678900	16678969	16678900..16678969	CG4694-RA,	FBgn0001185,	her,	1	.
CG1105-RA	GGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGCGTTCACAGTAATAGCGCCCGT	69	-	chr3R	2891258	2891327	2891258..2891327	CG1105-RA,	FBgn0037465,	CG1105,	1	.
CG12236-RA	CGCGAAATGGGCTGTTCGACCAAGGGATTCACCAAGATCGAGTACAGCGATCACTGAGACAGCGGTATG	69	+	chrX	5806739	5806808	5806739..5806808	CG12236-RA,	FBgn0029822,	CG12236,	1	.
CG12307-RA	AGGCGCCACATACCAACTGCCCCAAGTCCATTGTCCAACAACCTATATATCAACGAATGGAGACCCGGT	69	-	chr2L	11651680	11651749	11651680..11651749	CG12307-RA,	FBgn0032370,	CG12307,	1	.
CG31721-RA	AGGTGATCGAACCGGGTGGAGAGTAGCAAATTGTGTACATAGAGCTTGACATTTGGCAGTTATCGGTGT	69	+	chr2L	10626982	10627051	10626982..10627051	CG31721-RA,CG31721-RB,	FBgn0051721,	Trim9,	1	.
CG8238-RA	GGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGCATCACTACTGGAGGTTGGTGG	69	+	chr2R	7575051	7575120	7575051..7575120	CG8238-RA,	FBgn0040491,	Buffy,	1	.
CG2519-RA	ACCGGGCTTACATGCTAAATTCCAATTTGACTCCATCCCCAGAGCAACAAGCCCTCCAAGTATTTCCCA	69	-	chr3R	1365734	1365803	1365734..1365803	CG2519-RB,CG2519-RA,	FBgn0037336,	CG2519,	1	.
CG16989-RA	GGAAAGCTTTGAAGAGTACAACCACCGGGATGCACTTCAGCAACAGTTGTGCCTAGCCATTGCCC	65	+	chrX	690028	690093	690028..690093	CG16989-RA,	FBgn0025621,	CG16989,	1	.
CG14342-RA	GCTAACGTACGCCGACATTTGTCGTAAGCGCTATGCGGCATCGTTCCGGCGATACAACGAGTGTTTC	67	+	chr2L	1204455	1204622	1204455..1204464,1204564..1204622	CG14342-RB,	FBgn0031324,	CG14342,	1	.
CG32409-RA	ACACCAAAAGGAATTGGACAAATACAAGCCGATCACAGTAGAAAAGCATTTGGAATGCCGACTCGACGT	69	+	chr3L	5892727	5892796	5892727..5892796	CG32409-RA,	FBgn0052409,	CG32409,	1	.
CG5903-RA	ACCCACTGCTTTCATTCGTCGTCATGCGTCATTCAGTCGAACCGTGCTGTGACAAATTACGCAATGTCT	69	-	chr3R	11972406	11972475	11972406..11972475	CG5903-RA,	FBgn0038400,	CG5903,	1	.
CG5884-RA	CGGGCATAACTAACCCCATACGAACGTGTACCCTGGGTAGATAGCAAGATCTAGGATAGACAGCAGCGA	69	+	chrX	17600777	17600846	17600777..17600846	CG5884-RA,	FBgn0026192,	par-6,	1	.
CG7776-RA	TGATGCGTACAACATTTATGATTTGACACTTCTGCAACAGCAAATACGGGTAAAGACGAACACGAAACT	69	+	chr2R	7351099	7351168	7351099..7351168	CG7776-RA,CG7776-RB,	FBgn0000581,	E(Pc),E(Pc),	1	.
CG8833-RA	ATCGCATACAAACCACGAAAGGAGCGACTGAGAAACGATAGGGAGTTGGCAATGGCTGAGGTGGC	65	-	chr3L	13919423	13919488	13919423..13919488	CG8833-RA,	FBgn0036386,	CG8833,	1	.
CG15674-RA	TCCATCGGGCAACTATACCGAGTGGGAGAACGCACAGGAAGAGGATTACGATGAGGAAGGTCCAGGATT	69	+	chr2R	17521461	17521530	17521461..17521530	CG15674-RA,CR42547-RA	FBgn0034642,FBgn0260720	CG15674,CR42547	2	.
CG17584-RA	TCGCGATCCCCGTGAACTGAGGGAGGAGATCATAGCCTGCATACGTTACCAGCAGAGCATTATCGAGTA	69	+	chr2R	8731397	8731466	8731397..8731466	CG17584-RA,	FBgn0028963,	Or49b,	1	.
CG6866-RB	GCCACGGAGAACCAGTTCGAGGTGACCTATGTGGACATAGAGGAGAAGACCTTCTCTGGCCAGTTCCAG	69	+	chr2L	13385037	13385106	13385037..13385106	CG6866-RB,CG6866-RA,CG6866-RC,	FBgn0032515,	loqs,	1	.
CG13906-RA	ACATTGGACCAGCGTCTCACTACCAGTCAAAGTATTGAACAGTACAACCTAGCTATAAGGGCCACAGGC	69	+	chr3L	911753	911822	911753..911822	CG13906-RA,	FBgn0028999,	nerfin-1,	1	.
CG4577-RA	GCGAGAAGTACTTCTAAGGATCCCACGCGGAGATAGTCTACGTAGTACTTAATGATAGCCACAGGCCCC	69	+	chr2L	1139939	1140008	1139939..1140008	CG4577-RA,	FBgn0031306,	CG4577,	1	.
CG1619-RB	TTCCTGCCTGAGATCAATTTGTCCACTTGCAGTCCGGATCTCGTGGTGAAGAATTGGGCCTACGC	65	-	chrX	10485240	10485305	10485240..10485305	CG1619-RB,	FBgn0001206,	Hmr,	1	.
CG31237-RA	AAAAACCCTTTCGTTTCTCTTTGTTTCAGAGTTCGAAAATGCCGAGACGCTGCTGATATCGGAGGTGCA	69	-	chr3R	14079137	14079206	14079137..14079206	CG33520-RC,CG33520-RB,CG33520-RA,CG33520-RE,	FBgn0053520,	Rpb4,	1	.
CG6301-RA	CCTCTTTTGCGGAATGTGTGGAGACCGCTGTTCTGACGGACGTTGACTTTCCACAATGCTGTTGGACTT	69	+	chr2R	12714792	12714861	12714792..12714861	CG34460-RA,	FBgn0085489,	CG34460,	1	.
CG13978-RA	TTTGATCTTAGGACATCGACATGATCCCCGAGTCTGGACATTCAATTCACTAACGCTGGTGGTCGGAGC	69	+	chr3R	23291851	23291920	23291851..23291920	CG13978-RA,	FBgn0039518,	CG13978,	1	.
CG8563-RA	GTCCCCGGCGGAAGACACAGTTCGAGGCGAGTCTTTCCAGTTTGGGAGTTAGCTACGAGATGCAG	65	+	chr3L	7386817	7386882	7386817..7386882	CG8563-RA,	FBgn0035777,	CG8563,	1	.
CG8614-RA	AGCGAGCTCATGTATCCCACTTTCGAGGCAGTCAAGGAGGACAGAAGGCTAATGGAGCTACTTGCT	66	+	chr3L	7236012	7236078	7236012..7236078	CG8614-RA,	FBgn0024542,	Neos,	1	.
CG17124-RA	CGATCTGCTGGATCGCGCAAAAACCCTGTAAATCGCCGATGCCTCATTTGAAAAATCATCCAGCAGACC	69	-	chr2L	10745449	10745518	10745449..10745518	CG17124-RA,CG17124-RB,	FBgn0032297,	CG17124,	1	.
CG7169-RA	ACTCCAAAACCGCCAAGAAACAAGAGGATTTTATGGGATCAGTACCACAGCCTAAGGTATCCACCGCGC	69	-	chr3L	21608319	21608388	21608319..21608388	CG7169-RA,	FBgn0037105,	S1P,	1	.
CG10328-RA	CCGTCAGCAGGAGAACGATTTGCTAATGCAGGCCAAGAAACTCAACATGATCCTCGATCAGCAGGAGGG	69	+	chr3R	12467713	12467782	12467713..12467782	CG10328-RA,	FBgn0015520,	nonA-l,	1	.
CG11201-RA	CGGGAGTCCATCCACCTGACCAATAATTCGGTGCAGAAGCGGTACAAGAACAAGACCAACCGGGATTC	68	+	chr2L	6734793	6734861	6734793..6734861	CG11201-RB,	FBgn0031853,	TTLL3B,	1	.
CG3708-RA	TGCTTCTGGGCAAATCCAAGGAATCATCAGCCGAATTTTCGTTCCCAGTAGTAGGCCGGTTTCTGTGGA	69	-	chrX	824142	824211	824142..824211				0	no match
CG4575-RA	CATCAGCTCGGGCAGCCATGTTAAGGATACCGCATACTACGAGAGGCGTCGCAAGAACAATGCTG	65	+	chrX	6844823	6844888	6844823..6844888	CR4575-RB,	FBgn0029920,	CR4575,	1	.
CG32514-RA	GCGGCTACGCATTCGACGATCAACAGCGTAGGTCCAGTTTTGTGAGCGATGCATTCGACCTGGAC	65	+	chrX	20981989	20982054	20981989..20982054	CG33670-RA,CG11566-RA,	FBgn0064123,FBgn0031159,	stg1,CG11566,	2	.
CG11148-RB	CTCGCGCTTGCCGTCTACATCCGTAGCGCCTTGGTCTTTTCAGTTGCAAAATTCTATGAGATCGGCGC	68	-	chr4	881881	881949	881881..881949	CG11148-RD,CG11148-RE,CG11148-RF,CG11148-RG,CG11148-RH,	FBgn0039936,	CG11148,	1	.
CG7820-RA	AGTCGACGCTCCAATACGTTCCGCGCTACAACGATTCAACGATTGAACCATTCGGGATCCATTCCTCGA	69	+	chr2L	13803654	13803723	13803654..13803723	CG7820-RA,	FBgn0027844,	CAH1,	1	.
CG4700-RA	GCCAGAGTGTACATCTGGGCTGTTTCGTCAAAATACCCGAAGTGCTGAAGAATGAGCAAGTGACCTGGT	69	+	chr2R	12418806	12418875	12418806..12418875	CG4700-RC,CG4700-RB,CG4700-RA,CG4700-RD,	FBgn0011260,	Sema-2a,	1	.
CG4898-RA	AATGGAGATCAGATGAAAGGGCAGAAACTAAAGCAAAACATTCTCGTAGCACAAGCGCATTCCAATTCA	69	+	chr3R	11129742	11129811	11129742..11129811	CG4898-RL,CG4898-RA,	FBgn0003721,	Tm1,	1	.
CG32491-RU	TCAGCGCGAATCGGTCAAACTCAACTACTGCGGTCATAGCTACGTCAAGTTCATGGAGAATGGACGCGG	69	+	chr3R	17195214	17195283	17195214..17195283	CG32491-RU,CG42777-RA,	FBgn0002781,FBgn0261845,	mod(mdg4),pre-mod(mdg4)-U,	2	.
CG9403-RC	CGGCGTCTGCTACTGGGACAAGTGCAACAAGAAGCATGAGAGCAACTCCAAGTTGTTGGACCACATG	67	+	chr2R	2505433	2505500	2505433..2505500	CG9397-RG,CG9397-RH,CG9397-RI,CG9397-RD,	FBgn0086655,	jing,	1	.
CG9092-RA	CCAAGGGTGATCCCGTCGAATCGATCAAGCCGAAAACCTTCGAGGAACTAGACTTGTACTCGGGCCT	67	-	chr2L	6004470	6004537	6004470..6004537	CG9092-RA,	FBgn0001089,	Gal,	1	.
CG15155-RA	AGCGAAGAATCTGAAACTAGATCTCGACTGTGTAACACTTTCCCTGGTCTTGAGCAAAGAGGAAGCCCT	69	+	chr2L	18155268	18155337	18155268..18155337	CG15155-RA,	FBgn0032669,	CG15155,	1	.
CG17762-RC	TGTGGATTGGAACTAGTTTCGGTTCGATACTGACATTGTTCATCACCATGCCCGAGCGAGATGTGCGCA	69	+	chrX	12545351	12545420	12545351..12545420	CG17762-RC,CG17762-RD,CG17762-RF,CG17762-RG,CG17762-RH,CG17762-RI,CG17762-RJ,	FBgn0030412,	tomosyn,	1	.
CG8187-RA	GGAGCAGCCCTCAAAGCTTGAATGCCATCTGCAAATACCTGTGCGTTCCGATGTCTCTGTGGACG	65	-	chr2R	11428383	11428448	11428383..11428448	CG8187-RA,	FBgn0034027,	CG8187,	1	.
CG2657-RA	CACAAACGCTTTCTCCTTCACCGGAAAATACTCGTGGAGCAACACGCGGAAAAATTCCACACGCCTTCT	69	-	chr2L	23139	23208	23139..23208	CG2657-RB,	FBgn0031209,	Ir21a,	1	.
CG15651-RA	CGGACCACCAAGTCCTGCATAGGCAGTGTCTATAACGAGAGACCGTACTACTCCTACCTGGGCAAGCAT	69	-	chr2R	16872391	16872460	16872391..16872460	CG15651-RA,	FBgn0034567,	CG15651,	1	.
CG4617-RA	CCTATAATCCTTAAGTGAAATAAATGTGAATCACAAGATTCTTATTTCAGCTTCAAATTAAGCAGGCAC	69	-	chrX	6996629	6996698	6996629..6996698	CG4617-RA,	FBgn0029936,	CG4617,	1	.
CG9127-RA	CCGACGGAACTGTATCCACTTAACCCGAACGGTAGTCCTCAGGGAATTGCTGGCCTTTGCTCGTC	65	-	chr2L	6041479	6041544	6041479..6041544	CG9127-RA,CG9127-RB,CG9127-RC,	FBgn0000052,	ade2,	1	.
CG9005-RA	GTTATTCGGTTCCAAGATCGGGCACGGTACAGGCCACACTACTGAATCCCATAGGCACGGTGGTG	65	-	chr2R	7508832	7508897	7508832..7508897	CG9005-RA,CG9005-RB,CG9005-RC,CG9005-RD,	FBgn0033638,	CG9005,	1	.
CG4934-RA	CGAGACAGCACCTAGACAACAGCCTTATAAAGTATATTAGGAGCAGTGGATGATACCTCAACCGTTCAG	69	+	chrX	3999548	3999617	3999548..3999617	CG4934-RA,	FBgn0000221,	brn,	1	.
CG10102-RA	GACCAGCTCAATTCCGATTTCAAGCCCCAATCGTTAGACGAGCACAGTTTGTGGCGGTTCCTCCG	65	-	chr2R	10249268	10249482	10249268..10249293,10249442..10249482				0	no match
CG8419-RA	ATGCCATAGCACGTGGAATCAACGACCGGTGTGACGACATCCAGACTCAAGTGGAGCGGTACATG	65	+	chr2L	8208222	8208287	8208222..8208287	CG8419-RA,	FBgn0031999,	CG8419,	1	.
CG4446-RB	ATCCTGGCCTGGTGTACGTCTGTGATCCGGTTATGGGTGACAATGGTCAGCTCTATGTGCCCAAG	65	+	chr3L	9354237	9354302	9354237..9354302	CG34455-RC,	FBgn0085484,	CG34455,	1	.
CG33119-RA	CGGACCGCCTCAGTCAGCATCTCAACACTAGCGAAAAGAGAAAGCACTTCAATCGCCAACTTGCTTATG	69	+	chr2L	13964945	13965014	13964945..13965014	CG33119-RA,	FBgn0027929,	nimB1,	1	.
CG9100-RA	CGGTTCCGATCCATCACGCAAAGCTACTATCGATCGGCTCACGCCTTGATCCTGGTGTACGACAT	65	-	chr2L	7031839	7031904	7031839..7031904	CG9100-RA,CG9100-RB,CG9100-RC,	FBgn0031882,	Rab30,	1	.
CG10967-RA	ACATGACCGATGAGAATGCTTAGTTACTCGGGCGGATAGAGCTATATTCCAACCATGAAGCACCGGCAA	69	-	chr3L	12778390	12778459	12778390..12778459	CG10967-RA,CG10967-RB,	FBgn0260945,	Atg1,	1	.
CG3114-RB	CCGGGGTTAGTGGGGGAGATGATGTAATGGTTCAGAAGCGTGGGAGACCCAATTCCTCTTCAAGAAGCA	69	-	chrX	164732	164801	164732..164801	CG3114-RB,CG3114-RJ,CG3114-RK,	FBgn0005427,	ewg,	1	.
CG8345-RA	CGAGCGTCTAGGCAGTGGTACGGAAGTCCAAGTGAAGGATCTATGCTCCCGGTTCACCACTGACCTAAT	69	+	chr2R	2061822	2061891	2061822..2061891	CG8345-RA,	FBgn0033065,	Cyp6w1,	1	.
CG4975-RA	ACGAGCCTGCGTAGCTTGTTACCAAAAGCTGGAGACTGAAGATCGTGTTGCTTTCCTCGACTACGTGGC	69	+	chr2R	13615020	13615089	13615020..13615089	CG4975-RA,CG4975-RB,CG4975-RC,CG4984-RB,CG4984-RD,	FBgn0034266,FBgn0034267,	CG4975,CG4984,	2	.
CG5799-RA	CGTTGCTTTCGAAGTCTTGGTATTTAATACCAACCCCCGAAATCTAGCCACCAATCAGCTTCGATGCGA	69	+	chr2R	18173609	18173678	18173609..18173678	CG5799-RA,CG5799-RB,	FBgn0020307,	dve,	1	.
CG15112-RB	AGCCGGGCGTGTAATTTAAGGCATTCGCGACATATTCGATGATCGAAGCTCGCAACATTGCCAGAATGT	69	+	chr2R	15049302	15049371	15049302..15049371	CG15112-RB,CG15112-RA,CG15112-RC,CG15112-RD,CG15112-RE,CG15112-RF,	FBgn0000578,	ena,	1	.
CG32208-RA	ATATTTCACCATGTTCAAATACGCTGTCGTCGTTCTCGCTCTCGTTGCCTGCGCTGCTGCCAAGC	65	.	.	.	.	.	CG32213-RB,CG32208-RB,CG32214-RB,	FBgn0052213,FBgn0052208,FBgn0052214,	CG32213,825-Oak,CG32214,	3	.
CG11068-RA	ACGTCACGCAGAACTACCGATACCTGTTCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAA	69	+	chrX	13849779	13849848	13849779..13849848	CG11068-RA,	FBgn0030536,	CG11068,	1	.
CG1765-RB	GATCCTCCAAACTGCATGCGAAACAGATCAGAAAAGAGAACAGACAGTAGGGCGTGAACAGAGGGAAGA	69	-	chr2R	1979597	1979666	1979597..1979666	CG1765-RA,CG1765-RD,CG1765-RE,CG1765-RC,CG1765-RG,	FBgn0000546,	EcR,	1	.
CG17271-RA	CTGCAAGCATTCCAATCGGAGAACTTCATTGAACAAATTGTAACTAAACGTCCTTCTGAGAACTCTTTT	69	-	chr3R	16645673	16645742	16645673..16645742	CG17271-RA,	FBgn0038829,	CG17271,	1	.
CG4132-RA	AGGTGGCCGAAATGATTGTCCGGGATGTTACGAGTGTCACTCTTAGTGGCAAGACTCCTCCGCTG	65	+	chr2L	16290708	16290773	16290708..16290773	CG4132-RA,	FBgn0040079,	pkaap,	1	.
CG3308-RA	GAGATTCACGATAGACTCATACCTATGTGCCTTAACCACTAATCGAATTCAGGATGAAGCGCTTATCCT	69	-	chr3R	17097519	17097588	17097519..17097588	CG3308-RA,	FBgn0038877,	CG3308,	1	.
CG8276-RA	TTGGAGCGATGCATATTATCCCCAGACGCCATATGAAGCATATCGGGGCATTTACGCCACCCTGC	65	+	chr2R	2126525	2126590	2126525..2126590	CG8276-RB,CG8276-RA,	FBgn0263144,	bin3,	1	.
CG17064-RA	CGCTGTGAGAAGGAGAAACGCAATAGCTTCTACCTGTCCAATGAGGAATCGCCCTTGGAAGTTCGCCGT	69	+	chr2R	9392232	9392301	9392232..9392301	CG17064-RA,CG17064-RB,	FBgn0033845,	mars,	1	.
CG6235-RA	TCACTTGCAATCAAATTGTTTGCCTAACACCATTACCTCAGGCCACCCTTATCCCTATCCCCATCCATG	69	-	chr3R	5953664	5953733	5953664..5953733	CG6235-RA,CG6235-RF,CG6235-RB,CG6235-RD,CG6235-RE,CG6235-RC,CG6235-RG,CG6235-RH,	FBgn0004889,	tws,	1	.
CG7874-RA	GCTCCACGCTCCTTTTCTACAGATAAACCCTTCCATTTATGTTGGTCCCTTGCTCTAGTCTAGCGAAAT	69	+	chrX	19108858	19108927	19108858..19108927	CG7874-RA,	FBgn0030999,	Mur18B,	1	.
CG12345-RB	CGATGACCTGGACTTCTATGTGTACCGCTACCAGAGTTACGGAAAGACCTTTATCAAATCGTGCCAGGT	69	+	chr3R	14555563	14555632	14555563..14555632	CG12345-RB,CG12345-RA,	FBgn0000303,	Cha,	1	.
CG12859-RA	GCCAGTTCAAGTTCATCTAAGCCATACATTCAGCCAATTGATCTTCGATTCGTATAGTGGAATTAAA	67	+	chr2R	10644491	10644558	10644491..10644558	CG12859-RA,	FBgn0033961,	CG12859,	1	.
CG8407-RA	CCAAAACCGAACCAAACAAAAATTTAGCATTAATTTTAGTCATACACACAGAACACTCACCGTAGTTAA	69	+	chr2R	8041622	8041691	8041622..8041691	CG8407-RA,CG8407-RB,	FBgn0033687,	CG8407,	1	.
CG32461-RA	ACACCTTTACCATACCAAGTCAGCCACTTATTCGAAGATTCGCGGTAATAGTAAAACAACGGAAGATGG	69	-	chr3L	22947681	22947750	22947681..22947750	CG32461-RA,	FBgn0052461,	CG32461,	1	.
CG31846-RA	GCGCTACGTAACGACATAACCACAGTCGAGTCCACATCCGATCATCCGATTCCCGTACTTCACGCCGTT	69	+	chr2L	13484289	13484358	13484289..13484358	CR31846-RB,	FBgn0051846,	CR31846,	1	.
CG10414-RA	CATCGGTTGCGGATTCCTAGTGCCCGACGTAGGTTACAACGAGGCCTACATCTCATTCATGGCGG	65	-	chr2L	18609839	18609904	18609839..18609904	CG10414-RA,	FBgn0032691,	Atac2,	1	.
CG4655-RA	CACAGAAGGCACCGTTTTCCTCCTGGGACCATTAGATTTTGAGAAGCAAGCCATGTACCATCTAACGAT	69	+	chr3R	6665196	6665265	6665196..6665265	CG42601-RC,CG42601-RD,CG42601-RE,CG42601-RF,CG42601-RG,	FBgn0261053,	Cad86C,	1	.
CG11415-RA	GCCACATCGGAGTATACGTACTCGAACTACGTGCTGACCATGATTCAGGAGAACATAGGTTGTTGCGG	68	+	chrX	1241726	1241794	1241726..1241794	CG11415-RA,CG11415-RB,	FBgn0024361,	Tsp2A,	1	.
CG12297-RA	CAGGGAGTGAAGTTGCGTTGATACATTTTGGGAACTTAAGACCGCTGAAAATACCGTCTCTGTAAATTA	69	+	chr3R	17860209	17860278	17860209..17860278	CG12297-RA,	FBgn0038928,	BG4,	1	.
CG7908-RA	CGCCATGAAATGAAGCTGATTGAGTGGAGCCAGAAACTGGACCTTATACATCCCAGTGACGAGAGGCGT	69	+	chr3R	25829050	25829119	25829050..25829119	CG7908-RB,CG7908-RA,	FBgn0039734,	Tace,	1	.
CG2310-RB	GCGAACAACTAAACGCTTTGCGCAACCGAAATTCAGCTGCTTAAAGGGACATCGAAAGTGGTAGCTGCA	69	-	chr3R	25318995	25319064	25318995..25319064	CG2310-RB,	FBgn0039665,	CG2310,	1	.
CG8881-RA	CACTGGGCCACCTATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAGCGC	66	-	chr2R	8027192	8027258	8027192..8027258	CG8881-RA,	FBgn0026176,	skpB,	1	.
CG12251-RA	TCCATCCACTTTCCTCTCACCAAAGGTGATCATCTTCTGTATCCAATTGGCAGGCTGGAGCGAATCGGG	69	-	chr2R	9100012	9100081	9100012..9100081	CG12251-RA,CG12251-RB,	FBgn0033807,	AQP,	1	.
CG15594-RA	CATTCCGCAGACACTTTGCAGTTGGTAAGTCAGGGTTTTGGGCATGAAAAGTGACGACAGCAAACGCGT	69	+	chr3R	2116043	2116112	2116043..2116112	CG15594-RA,	FBgn0037421,	CG15594,	1	.
CG7864-RA	AGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTACGTAAAGGCCCTGCACAAGT	69	+	chr3L	1559270	1559339	1559270..1559339	CG7864-RA,	FBgn0035233,	pex10,	1	.
CG1845-RA	CGCTGCGGAAGAACTGCCTCGACGAGATTGTGTTCCTGGTGCTTTTCTTCGATGTTAAGCGCACC	65	-	chr2R	3160962	3161027	3160962..3161027	CG1845-RA,	FBgn0033155,	Br140,	1	.
CG17167-RA	CCGGTTGGATGCAATTCTGGTGGATCTTCGTCTTCCCCATTAAGGTCACGCTATCCCTATTGATCCCGC	69	+	chrXHet	57653	57722	57653..57722	CG17167-RC,CG17167-RD,	FBgn0039941,	CG17167,	1	.
CG31759-RB	TGCGCTGAGGGAGTGGCAATTTTCTTTCGGAACTCGCGCTTCGATCTCTTGGATTCTCAAATCCTGCAT	69	+	chr2L	12209184	12209253	12209184..12209253	CG31759-RC,CG31759-RD,	FBgn0051759,	CG31759,	1	.
CG3811-RA	TTAAGTGTTTGAAGTCTGCTGCATACGTTTCGCTTTATTTCGACTTTATGCAATCTCGGTTTCGAAGTT	69	+	chr2L	9539066	9539135	9539066..9539135	CG3811-RA,CG3811-RB,CG3811-RC,CG3811-RD,CG3811-RE,	FBgn0032123,	Oatp30B,	1	.
CG3754-RA	GGCCGCCAATTCGATAGCTAATCGTGCCACCATTATTTTGAGTAAATCATGCAGCAATGTGGATGGTGA	69	-	chrX	12724053	12724122	12724053..12724122	CG42276-RB,CG42276-RC,	FBgn0259171,	Pde9,	1	.
CG13927-RA	GCTAGGCAACTGGTCCAAAATACAGGACGTCCATCCAAAAGATCCAGAGGAAGAGCTTTCCAAGCCGGG	69	-	chr3L	1624464	1624533	1624464..1624533	CG13927-RA,CG13927-RB,	FBgn0035245,	GC,	1	.
CG14805-RA	GTGGCCCTGCATAGCGTGATTGTCAGCAAGATGGAAACTAGGGTGTATGTTGGCTCCAGTGACGG	65	+	chrX	1772122	1772187	1772122..1772187	CG14805-RA,	FBgn0023514,	CG14805,	1	.
CG2709-RA	CGGCAATCATCGGCACTTCGACAAGTACAAGGAGAGGAAGGAACTGGAGATGGATAAGCTGTTCAAGGA	69	+	chrX	2621056	2621125	2621056..2621125	CG2709-RA,	FBgn0024977,	CG2709,	1	.
CG8980-RA	ATCTATTTGGTCGCAACAGTCAAATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTC	65	-	chr2R	12892318	12892383	12892318..12892383	CG8980-RA,	FBgn0026402,	NiPp1,	1	.
CG18275-RA	TTGTGCTGTTAAAAGAACACAGTAACCTGATGTCAGACCGAGCAGCCCAGCCCAGTCTCCTGTGC	65	-	chrX	372277	372342	372277..372342	CG18275-RA,	FBgn0029523,	CR18275,	1	.
CG10343-RA	CTGTGGCATGACCTATACCCTGTTCGAATGCCTTAAGGACAACCTGGAGCAATTGACCGCAGAGCAACC	69	+	chr2L	18703972	18704041	18703972..18704041	CG10343-RA,	FBgn0032703,	CG10343,	1	.
CG1516-RI	CATTCATGTTTCCGTGTTTCCAGGATCAATCGACCATGAGTAACTGGTCAAATTTTTTAGCTGTCCCTG	69	-	chr2R	5738413	5738482	5738413..5738482	CG1516-RG,CG1516-RI,CG1516-RE,CG1516-RD,CG1516-RA,CG1516-RJ,CG1516-RB,CG1516-RK,CG1516-RL,CG1516-RP,CG1516-RM,	FBgn0027580,	CG1516,	1	.
CG13407-RA	GGGCTCCGATTACTATCAGCACCACTATAACCCGTATGCTGGCACAAACTCCCATCGGCATCCTTGGTC	69	+	chr3R	17930978	17931047	17930978..17931047	CG13407-RA,	FBgn0038931,	CG13407,	1	.
CG7742-RA	GCCAACTATAGGCCTGTTTACGCTCCAAAGGATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCC	69	-	chr2L	5213709	5213778	5213709..5213778	CG7742-RA,	FBgn0031690,	CG7742,	1	.
CG16936-RA	CGGCGGCTCTATTATGTTTTGTTTTATATCCACACATTCTATATGCATATCCACTTTTGAATAAACGGA	69	-	chr2R	20654293	20654362	20654293..20654362	CG16936-RA,CG16936-RB,CG16936-RC,	FBgn0027590,	CG16936,	1	.
CG4261-RA	ACTTGCCGGAACTCTGGTCCGAGCATCAGTACGAGGAAGAGTACGACTTGGGCAACTTTGTGCAG	65	+	chr3R	11808967	11809032	11808967..11809032	CG4261-RB,	FBgn0022787,	Hel89B,	1	.
CG15257-RA	TCCGAAATCGTGAACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTTCCGGAT	69	+	chr2L	15485257	15485326	15485257..15485326	CG15257-RA,	FBgn0020371,	Tim17b2,	1	.
CG17025-RA	GCAACATCAACTGAGGCATAGTCGAAATCGGTACTTCGCACAATCTAGCTCGAGTCGGTTCGAGTTGCT	69	-	chr3R	9291673	9291742	9291673..9291742	CG17025-RA,	FBgn0040554,	CG17025,	1	.
CG17213-RA	GCGGCCTGCTTTGTGGTGAGCATCTTTGGCATTTTCCTGGAGACCAAGGTCAACTTCATTGTGGG	65	+	chr2L	12139748	12139813	12139748..12139813	CG17213-RA,	FBgn0032416,	Gr33a,	1	.
CG8516-RA	TCCTCCCAAAACAGCTCACCTATTCTGGCAAGGAAACAGCAGCAAGATGGATTGGGGGTCAGTCC	65	+	chr3R	5621333	5621398	5621333..5621398	CG8516-RA,	FBgn0037757,	CG8516,	1	.
CG4282-RA	GCGCAAGCTGAAAAACCACATGAGCTCTATGCATGACCCAGAGAGTACCATAATCTGCGACAAGT	65	+	chr2R	12211370	12211435	12211370..12211435	CG4282-RA,	FBgn0034114,	CG4282,	1	.
CG3823-RA	AAGGGAGAGGTGTTCAAGCTAATCCATTTCCATTTGCCAAATGCGGACACTCCATATCGGCACTTCCCG	69	+	chrX	6200168	6200237	6200168..6200237	CG3823-RA,	FBgn0029863,	CG3823,	1	.
CG31286-RB	GGTTTTCGTGGTCAGATATACTCCACCTGGGAATGTGAAAGGATTATACACGGATAATGTTCCTCCCAG	69	+	chr3R	2467640	2467709	2467640..2467709	CG31286-RB,	FBgn0051286,	CG31286,	1	.
CG12944-RA	GCGATCTATTCGGGCTTCTTTCCGATGTCAGTAATACCGATTACTGGCCAGAACGTCAATGCCACGCGA	69	+	chr2R	6797778	6797847	6797778..6797847	CG12944-RA,CG12944-RB,	FBgn0033573,	Obp47a,	1	.
CG5854-RB	CTCCAGCACAAGCACCTCTACTTGGATAACACGAAACTGAAAGACTTTGGCTACGTGCTGCAGCATCCG	69	+	chr3R	19761205	19761274	19761205..19761274	CG5854-RA,CG5854-RB,	FBgn0039130,	CG5854,	1	.
CG2807-RA	AGGTGGGCGCCTCTGAGATTATCAATCGTGTGGTGGATGACCTGAAGGATGAGAACGAGCAGTACAGGA	69	+	chr2L	571262	571331	571262..571331	CG2807-RA,	FBgn0031266,	CG2807,	1	.
CG10198-RA	GGGAGCGTCAGGAAAGCATCACCTTCAAGCCAAATATCTGCTAAAGGCAAAACATTTTGCTACGGCGCA	69	-	chr3R	19600820	19600889	19600820..19600889	CG10198-RA,	FBgn0039120,	Nup98,	1	.
CG18530-RA	TTTTCGTTGTGAGGGTGTACTGTTCGACCTTTTTTATGATCGTCAACGGAAAATTTTCAGATCAC	65	+	chr3R	8459825	8459890	8459825..8459890	CG18530-RA,	FBgn0042207,	CG18530,	1	.
CG33070-RC	GCGTCGAACTCACTTAAATCGAATGCAAATAGTCTCAACCAAAGTAGCCTTAGTGAGTAAGCGGATATA	69	-	chrX	6970327	6970396	6970327..6970396	CG18350-RH,CG14425-RA,	FBgn0003659,FBgn0029933,	Sxl,CG14425,	2	.
CG2621-RA	CGCAAGCAAATATTTAGCATAAAATCGAAATAAAACCAAAAATCCACTTTAAACTATGCATAAATAATT	69	+	chrX	2571661	2571730	2571661..2571730	CG2621-RL,CG2621-RJ,CG2621-RA,CG2621-RM,	FBgn0003371,	sgg,	1	.
CG13861-RA	TGAAGCGACCGGAGCCGCATCAGGACTTTGAAAAGACCATACAGAGACTAAAGACACAGAAGGCGGC	67	-	chr3R	18137779	18137907	18137779..18137799,18137860..18137907	CG34377-RA,CG34377-RB,	FBgn0263117,	CG34377,	1	.
CG32453-RA	TCAACTTCAGGGATAGATAGGGCTGATTACCAATGTTACTAGCAATATAAAAATAAAGCCATAAGTGCT	69	+	chr3L	22690693	22690762	22690693..22690762	CG32453-RA,	FBgn0052453,	CG32453,	1	.
CG12928-RA	AGCGGTGGAGCTTTGGAAGTGGAGTAATGGCAATTACTCTCTATCAAGCAGGCTGATAGATGGGCAGGT	69	-	chr2R	5475991	5476060	5475991..5476060	CG42600-RD,	FBgn0261016,	clos,	1	.
CG6355-RA	TAGACGCCAATCCAACTCAATTCGATTTCAACAACCAACACTCTGTCAGCCAGCATTTCCGACTCCGCA	69	-	chr2R	13662594	13662663	13662594..13662663	CG33981-RB,CG6355-RA,	FBgn0250851,FBgn0028741,	CG33981,fab1,	2	.
CG6757-RA	GGAACTCTTACTTTAAGCGTGGTTCTAACTAAATGTTAAACAGAAAAAATATTACATAATGTTGTTTGT	69	-	chr3L	9703612	9703681	9703612..9703681	CG6757-RA,	FBgn0040475,	SH3PX1,	1	.
CG1696-RA	GTCTGAGAATTGAGAAATCGTGGCACATCATCCGAAGCATCACAGGATATTCAGGATATTCCGGGCAGC	69	-	chrX	21191176	21191245	21191176..21191245	CG1696-RA,	FBgn0029067,	l(1)G0269,	1	.
CG41127-RA	CGAAGTGGCATGATCACGAAGACTTTGAAAATGCTGTTGAGATTGTCCGAAAATTAAAAGTTTAA	65	-	chr2RHet	1695919	1695984	1695919..1695984				0	no match
CG32495-RA	GAGGCGGCAATAATGTCTACGGCGTGGATATACCAGATGCACTAAAGCGCATGTCACGCGTGGAG	65	.	.	.	.	.	CG6835-RE,CG6835-RF,CG6835-RH,CG6835-RI,CG6835-RJ,CG32495-RB,CG32495-RD,CG32495-RF,CG32495-RG,CG32495-RH,	FBgn0030882,FBgn0052495,	GS,CG32495,	2	.
CG14060-RA	CGAGTCCCTCTACGAACCCATCACACCTGTTATGGATGAAACCAAGACTGAAGCCCAGACATCCAGCCT	69	+	chr3L	16976062	16976131	16976062..16976131	CG42665-RD,CG42665-RE,	FBgn0261547,	Exn,	1	.
CG13377-RA	TCGGGTTTTTGCTGGAATGAAAGAGGCCCAAGATTCGCTACCCGCCAAACTTCTTTGCGGTTGGATG	67	-	chrX	153418	153485	153418..153485	CG13377-RA,	FBgn0261446,	CG13377,	1	.
CG12207-RA	AGGCGCACAACAATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCAGCA	69	+	chr3R	10126325	10126394	10126325..10126394	CG12207-RB,CG12207-RC,CG12207-RA,	FBgn0038220,	CG12207,	1	.
CG2471-RA	CATCTTATGCGAAACACAGAGTTGATCACCTGCAATCTCAGTGGCAATGTGCTCAAAAGCGTTTCGCCC	69	-	chrX	11816293	11816362	11816293..11816362	CG2471-RA,CG2471-RB,	FBgn0030357,	Sclp,	1	.
CG8211-RA	GACAAGAATGGCATGATGCAGACGGATGCGATTTGGGAGGACCTAAGGACCACGCTGATTGCCTC	65	-	chrX	17547596	17547661	17547596..17547661	CG8211-RA,	FBgn0030858,	CG8211,	1	.
CG12149-RA	TAATGCCTTTGGTGAACTGCGAACTCTAGCTGACGAGGGAATGCTCAACTATCCGTACTCCACCCGCG	68	+	chrX	9216916	9216984	9216916..9216984	CG12149-RA,	FBgn0040234,	c12.2,	1	.
CG10581-RA	TGCTCGGCTCTGCAGGATAGAGGACGCATTCTTCAAGGATTCTACACAGAGGAAATGCGAGGTGAGGG	68	-	chr3L	21027083	21027151	21027083..21027151	CG10581-RA,	FBgn0037046,	CG10581,	1	.
CG7673-RA	TGCGGCCAGTCATTGTTATTTAGGTAGTTATCGTTAATAAAGGATTTCGATACAGATCATTTTCGTTTT	69	-	chr3L	21290269	21290338	21290269..21290338	CG7673-RA,	FBgn0000551,	Edg78E,	1	.
CG10247-RA	CGCCTGGGACCAGTTGGAATCGGATTCGTCAATAGCTTTCCCAATTTGGCACGTCGCCTCCATATGAAA	69	-	chr2R	10773653	10773722	10773653..10773722	CG10247-RA,	FBgn0033981,	Cyp6a21,	1	.
CG13272-RA	CCACCGAAACCGCTACTAGGACCCATGTACCTCATCATCGAGGGTCATTCGAAAGTGAAGACCTACGGT	69	+	chr2L	16814779	16814848	16814779..16814848	CG13272-RA,	FBgn0086673,	CG13272,	1	.
CG8290-RB	GGGCACCGAAGAGAGCATGAATCGGAATGAACAAGCTCACGCCTACGATCGAAAGTTGACACGCCTTCT	69	+	chr2R	7861402	7861471	7861402..7861471	CG8290-RB,	FBgn0026573,	CG8290,	1	.
CG12283-RA	GCCGAGGCTAACAGATCTTCCGTACTCTACGCAGGGCTATGACAACAACGGAAGTGTCCTGTCCACTG	68	-	chr2L	12819919	12819987	12819919..12819987	CG12283-RA,	FBgn0015399,	kek1,	1	.
CG7269-RA	TGAGGGACGCTAGAGCTCGAAGGTGCATGTTAATCGGAACAAGACTATGCACTTCGAATAGATACAAAC	69	-	chr2L	5539574	5539643	5539574..5539643	CG7269-RC,CG7269-RA,CG7269-RB,	FBgn0014189,	Hel25E,	1	.
CG32418-RA	ATCTCGACCGCCTGATGAAGACCAAAACGCTGAAGAAAATGCACCAGAGCAAACTGTTCAAGCAGAAGG	69	-	chr3L	5769690	5769759	5769690..5769759	CG32418-RA,	FBgn0052418,	vito,	1	.
CG14655-RA	AGCTCTGCCAAAAGACGTTCAGGTACAAGGTCAGTCAAAGGACCCATCGATGTCCCACCGAGGAG	65	-	chr3R	603921	603986	603921..603986	CG14655-RA,	FBgn0037275,	CG14655,	1	.
CG9947-RA	GCTTCCGGAAGCTATATCGCCGTCTCAACCAAACGAACACCAACTATGCCAACGGCCTGAAGTCTGG	67	-	chrX	16333885	16333952	16333885..16333952	CG9947-RA,	FBgn0030752,	CG9947,	1	.
CG12885-RA	AGCCACCCAATTCAATGTGAACGACCGTCTCGATTTATTGCCAATTCATTGGGCGAAAGAAAATTCGAG	69	+	chr3R	23359374	23359443	23359374..23359443	CG12885-RA,	FBgn0039523,	CG12885,	1	.
CG12875-RA	GCCACCGTGCAGTCCAGGAATCGATACGGATGGAGCGATTTGACCAACAGTTTCGTCTTCTCCACATCA	69	-	chr3R	23604250	23604650	23604250..23604302,23604633..23604650	CG34353-RA,CG34353-RB,	FBgn0085382,	CG34353,	1	.
CG2336-RA	ACCACTACGAGTCATTGACCTTTAAGGGAAAGCGCAAAGTGGTTGTCCATCCAGTTGGCACCATCTGGG	69	+	chr3R	2407633	2407702	2407633..2407702	CG2336-RA,	FBgn0037455,	CG2336,	1	.
CG8301-RA	CTTGGAGAAGAACTTCAAGTGCAACGTTTGCGGTCGAGCCTATCTGTTTGAGAAGTCATTGCGGCTGCA	69	+	chr3R	5411471	5411540	5411471..5411540	CG8301-RA,	FBgn0037717,	CG8301,	1	.
CG13994-RA	AGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTTTGGACATCCGGAAAAGCGTCAGAGAAACG	69	+	chr2L	6063318	6063387	6063318..6063387	CG13994-RA,	FBgn0031772,	CG13994,	1	.
CG5027-RA	CCGTTTTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCGGTTCAACATCCACC	69	+	chr3L	16223200	16223269	16223200..16223269	CG5027-RA,	FBgn0036579,	CG5027,	1	.
CG4624-RA	GCGGATTCAAGAACGGCATGCTAAAGCACTCGGACTATCTAAATCTGACCCAGTGTGAATCCCTCGAGG	69	-	chr3R	18984843	18984912	18984843..18984912	CG4624-RA,	FBgn0039058,	VhaAC39-2,	1	.
CG10257-RA	GCACGACCAGTACACCGAGGACATGACACGGCAATATCGACTGTGGCTATATACGGATGATGCGG	65	+	chr2R	10831412	10831477	10831412..10831477	CG10257-RA,	FBgn0033985,	CG10257,	1	.
CG5847-RA	GCCAGCCACGTACTTGCCACCTTCAACTACAAGAGCACCTAAGCCAAATTGCTACACGGGATCAACTGA	69	+	chr3L	20416127	20416196	20416127..20416196	CG5847-RA,	FBgn0036985,	zye,	1	.
CG5808-RA	GCGCAACAGGACGGAAGATTTTCGAAATAGGATGAGCTCTGCAGAGCGAAGAAAAGCGAGAGAACAGCG	69	-	chr3R	20641514	20641583	20641514..20641583	CG5808-RA,	FBgn0027617,	CG5808,	1	.
CG15219-RA	ATCTTTTTTCAAAATTTTCAGTCATGGAATACGGAAATGGTATGCAATACGATGGTTATAGCCAAGGTG	69	-	chr2L	22105355	22105424	22105355..22105424	CG15219-RA,CG15219-RC,	FBgn0040519,	CG15219,	1	.
CG1478-RA	ACTTCAGGCCCTCAATGCCGATCCCAACTACCAGAAGCTGAAGAACTCCGAGGATATTGCCGAAT	65	+	chrX	8373732	8373797	8373732..8373797	CG1478-RA,	FBgn0000359,	Cp36,	1	.
CG6291-RA	TGGATGGTACTACGGATGTGACGAGGACCCTTCACTTCGGTGAACCCACTGAGTTTCAGAAGGAAGCCT	69	-	chr2L	16908848	16908917	16908848..16908917	CG6291-RA,CG6291-RB,	FBgn0026150,	ApepP,	1	.
CG11024-RA	CGCTTTTCGGTCGCATACTCAGACGCTACTGCGCGGTGAATACTAATCCCAGCAAGATCATGGTGGTCA	69	+	chr2L	5520341	5520410	5520341..5520410	CG11024-RA,	FBgn0000318,	cl,	1	.
CG7919-RA	TGGCAAGACTCGTTTGTAAATTCCTTATCATGGCAGTTTTTAGAACATAAGGCAGTAAATTGCACCGAA	69	+	chr3L	8103015	8103084	8103015..8103084	CG7919-RA,	FBgn0028379,	fan,	1	.
CG15720-RA	ACCATGACCGTGGAAACAACCAGTACATTTTTCGACTCCAGCACCCAGACAGGTGAGCACTTTGATTTT	69	+	chrX	12928324	12928393	12928324..12928393	CG42628-RA,	FBgn0261379,	rad,	1	.
CG7160-RA	AGGTGCCCCAACCAGATCTTGACTATGCTAAGCCTCCTAAGGTCTAATAAACGAGGCACTGAAATGGAA	69	-	chr3L	21659554	21659623	21659554..21659623	CG7160-RA,	FBgn0037114,	Cpr78E,	1	.
CG10279-RB	TTTGGATACCTTTTATGGCTCAACACGAGAACAAGAATGTGTAAAGCAAACAAAGCAAACGGGAAATCA	69	-	chr3R	1826269	1826338	1826269..1826338	CG10279-RC,CG10279-RD,CG10279-RB,CG10279-RA,CG10279-RE,CG10279-RF,CG10279-RI,CG10279-RH,	FBgn0003261,	Rm62,	1	.
CG17051-RA	TGGGAAAAAGGAAGATACCCTCGGTTACCGGATGGCATGATTTTTGGGTACTTACCACATCGGAGGACA	69	+	chrX	21217928	21217997	21217928..21217997				0	no match
CG31792-RA	TGGTCAAGCAGACGGGTCAGGCAACATACGACACTCTCCTGAAGATTTCTCAACGGGTAAGAGTAGGCA	69	+	chr2L	19002295	19002364	19002295..19002364	CG31792-RA,	FBgn0051792,	CG31792,	1	.
CG5942-RB	TGCAGCTATGCCAGAATGCACAGATCTACAACGAAGAGGCGTCTCTGATTTACCTGGACTCGATTGCCC	69	-	chr3L	15963838	15963907	15963838..15963907	CG5942-RC,CG5942-RD,CG5942-RA,CG5942-RB,	FBgn0000212,	brm,	1	.
CG15919-RA	CGGGCCAAGAAGATCTACGAGCCGGTGTGGAAAAAGGTCTGGACACCCACCATTCACAACGAGTG	65	+	chr2R	12680465	12680530	12680465..12680530	CG15919-RA,	FBgn0040743,	CG15919,	1	.
CG16922-RA	GCGATTCGAGACCATGAACTCCAATGAGGTAACATTTTCAGGAATTTTGTTGTATCTACATCGAATCCT	69	+	chrX	10850677	10850746	10850677..10850746	CG16922-RA,	FBgn0030254,	CG16922,	1	.
CG4900-RA	GTGTCGGATAGCAAGTTGTATCCATGGAGTGAAATATCAACATACATCAAACTACCACCGTTCTTCGAG	69	-	chr3R	18547871	18547940	18547871..18547940	CG4900-RA,	FBgn0024958,	Irp-1A,	1	.
CG3858-RA	AGGAGCCATCAGTTGTCACAATCCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCA	69	+	chr2L	9611626	9611695	9611626..9611695	CG3858-RA,CG3858-RB,	FBgn0019809,	gcm2,	1	.
CG33141-RA	TGTGCTCCTCGCAAATCTTGTATGTCTTCCCCAGCTTGTCCTGACCACTGTTGAATGTCCTTGGTTCGA	69	+	chr2R	4742640	4742709	4742640..4742709	CG33141-RB,CG33141-RA,	FBgn0024189,	sns,	1	.
CG1193-RB	CCAGCACCCTCGATAATGATCGTATCCCATGTGTACTTCCCGATCACAATTATTTGTAACCTGTATAAA	69	+	chr3R	1612859	1612928	1612859..1612928	CG1193-RA,CG1193-RB,CG1193-RC,CG1193-RD,CG1193-RE,CG1193-RF,CG1193-RG,CG1193-RH,	FBgn0037375,	kat-60L1,	1	.
CG11776-RA	CGGATCCTGGCTCCAAACTCAAAGAGAGCTTCCACACGGAGAAGCACGATATCGAAGACTGGCAAACGA	69	-	chr3R	4623451	4623520	4623451..4623520	CG42599-RE,CG42599-RF,CG42599-RC,	FBgn0261015,	Pif1A,	1	.
CG15125-RA	GCGGATTCTTCCACGATCACAACCAAACTACGGCCACAATTGAACGGGATTCGCGAAAAGTGCTGCG	67	+	chr2R	15546970	15547037	15546970..15547037	CG15125-RA,	FBgn0034463,	CG15125,	1	.
CG11567-RA	GGGCGAGTCGATTCTCTACTTCGGTTGCCGTAAGCGCAGTGAGGACTACATCTACGAATCCGAGTTGGA	69	+	chr2L	6345460	6345529	6345460..6345529	CG11567-RA,CG11567-RB,	FBgn0015623,	Cpr,	1	.
CG7179-RA	CACCTGGGCGTCACAACTCAGCCACAGTCTTCGTCCCAATCCATAGTTAAGCCAGAGTCACCTCTG	66	-	chr2L	7776032	7776098	7776032..7776098	CG7179-RB,	FBgn0020880,	CG7179,	1	.
CG11898-RA	GGGACTTCCACTACTACCAGAACGAGAATACCTCTGCTCTGTACCTTCATGTGAGCATTAACCGGGCCT	69	+	chr3R	24995182	24995251	24995182..24995251	CG11898-RB,	FBgn0039645,	CG11898,	1	.
CG3878-RA	GATTTGGTTGCCTGCAGAAGTCCTTTGCATCGCGTTGGATCGCCAAATCAGGTTGACTGGCACTC	65	+	chrX	19419418	19419483	19419418..19419483	CG42687-RD,CG42687-RA,CG33525-RC,	FBgn0261573,	CoRest,	1	.
CG2126-RA	GCCAATGCCATCCACTATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGTGTGG	69	-	chr3R	27601305	27601374	27601305..27601374	CG2126-RA,	FBgn0039876,	CG2126,	1	.
CG14867-RA	CCACCGTCACTTGGGCACCGACAATCAGCCACCAGGACCAAGGATCCGAGATTGATATCATAATGGC	67	+	chr3R	11207523	11207590	11207523..11207590	CG43073-RF,CG43073-RG,CG6130-RA	FBgn0262483,FBgn0038334	CG43073,h-cup	2	.
CG15786-RA	TTGATTACGTTTTTCTAGCCCTAGTCGAAACAGCTATGCACCCGCGTTCGGATGGAATCCCGCCC	65	+	chrX	5196723	5196788	5196723..5196788	CG42749-RB,	FBgn0261803,	CG42749,	1	.
CG11742-RA	CGACAACCTGGTAATGCTTGTGCTTTTCCTGTTTTGTGCCATGGTTCAGGTCTTCATGATTGCCACCCA	69	+	chr3R	4379264	4379333	4379264..4379333	CG11742-RA,	FBgn0037594,	Or85d,	1	.
CG11876-RD	AATCCGTGATCCCGATCCAGTGGTCTTCCTGGAGAATGAGCTGGTCTATGGCACGGCATTCCCTG	65	+	chr3R	24941018	24941083	24941018..24941083	CG11876-RA,CG11876-RD,	FBgn0039635,	CG11876,	1	.
CG31620-RA	ACGGTATTGCCATCCATCTATGTTGCTCTAAGCGGTAGCCTTCTCTACTTTTGGTCCTCCCTCCTGTCA	69	-	chr2L	21369241	21369310	21369241..21369310	CG31620-RA,	FBgn0041245,	Gr39b,	1	.
CG30145-RA	GGATTTGGGTCTGATTGATGAACGGGGTAATGTGCAGATCGATAAGTACATGAAATCCGGAGTGG	65	-	chr2R	16435475	16435540	16435475..16435540	CG30145-RA,	FBgn0050145,	Obp57e,	1	.
CG17323-RA	ACCCAACATGCACATTATGAAGTGGTTGCCACAACGCGATATCCTCTGCCATCCCAACGTCAAGGTGTT	69	+	chr2L	18825608	18825677	18825608..18825677	CG17323-RA,CG17323-RB,CG17323-RC,CG17323-RD,	FBgn0032713,	CG17323,	1	.
CG6444-RA	GGATCCCATACAGTTCCTGGCCTCCTACCTACTAAAGCATAGCAACGGGTGCGACGAGAACAACGC	66	+	chr2L	10733125	10733191	10733125..10733191	CG6444-RA,	FBgn0032293,	Dpy-30L1,	1	.
CG17301-RA	CGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCCGGAACATGGATCTTTACAAGAT	69	+	chr2L	2653334	2653403	2653334..2653403	CG17301-RA,	FBgn0031442,	Prosbeta4R1,	1	.
CG15306-RA	GCGCTGGCTACGATGCACTGGTAGCTCGTGACCATCAGAACATCGGTATCGGATCCTCAAAATTGACAA	69	-	chrX	10225041	10225110	10225041..10225110	CG15306-RA,	FBgn0030191,	CG15306,	1	.
CG10444-RA	GGCGACGCCATAAAGAAGAACAAGACCAAACTGCCCAGGACGAAACGCTCACCAAACTAACTGAGCAGT	69	-	chr2R	16159924	16159993	16159924..16159993	CG10444-RA,	FBgn0034494,	CG10444,	1	.
CG9074-RA	GCCGAAAGTTAAATATTATGAGTCAGAGGTTATTTTCTTCTAATAAAATGGATCGCTAATCACAATATA	69	-	chr3R	21657313	21657382	21657313..21657382	CG9074-RA,	FBgn0011668,	Mst57Da,	1	.
CG31605-RF	CCTCAACCCTGCCCCTCTAGTTGCGCACTTTCTGTTTTTTCTTGTCGCCTCTGTTGATTTTGCTGTGTA	69	+	chr2L	8109187	8109256	8109187..8109256	CG31605-RE,CG31605-RD,CG31605-RC,CG31605-RI,CG31605-RA,CG31605-RF,CG31605-RH,CG31605-RB,	FBgn0261822,	Bsg,	1	.
CG15765-RA	CCTCAACGAGGATGACAGCAATAGCGATGCCTCCAATGAGATATTCGAACATTTGCCGCACAAGAAG	67	+	chrX	5731777	5731844	5731777..5731844	CG15765-RA,	FBgn0029814,	CG15765,	1	.
CG11887-RA	ACACGCATCATTTGGTCGTGTGATTGGTCGCATGATGGTCAGTTCTTTGTGACGAGCTCAAGGGATGGA	69	+	chr2R	6535622	6535691	6535622..6535691	CG11887-RA,	FBgn0033540,	Elp2,	1	.
CG31488-RA	TGGGGGGAAGAGAAGGAACTGGAGTTCGGTTATTTGCGATACTTTTTCCGCTTTGTCGAGGACCGCAGT	69	+	chr3R	2783713	2783782	2783713..2783782				0	no match
CG32192-RB	GCTTCGGATTTAATTTTTGCCTTTACGTATGTCCTCGCAGGAGTTTTGCTAGCTTGGGGAATCAAAAGC	69	+	chr3L	18033720	18033789	18033720..18033789	CG32192-RB,CG32192-RC,	FBgn0052192,	CG32192,	1	.
CG7393-RA	AGGTGCATGCCTGAAATGTAGCCATTCGGAAATGTTTCCAAAAATCAATCAGAGTCACAGCCTTAATGT	69	+	chr2L	13782368	13782437	13782368..13782437	CG7393-RA,CG16890-RB	FBgn0024846,FBgn0028932	p38b,CG16890	2	.
CG10491-RA	GGGCATACCCTGCAATTTCGACTACTGCTTCCATAATGGCACCTGTAGGATGATCCCGGACATCAACGA	69	-	chr3L	5810646	5810715	5810646..5810715	CG10491-RA,CG10491-RC,	FBgn0003984,	vn,	1	.
CG31031-RA	TTCGTTCTACGGCGAAGATGTGATCCCCGGTTCTAGTTTCTACGAGTGCGATTCCAAGCCGCAGC	65	+	chr3R	25888846	25888911	25888846..25888911	CG31031-RA,	FBgn0051031,	CG31031,	1	.
CG5998-RA	GGTGGGGCACTTAAACATCATGGGTCAGAAGATACGACTGAACGATCGGGAATTAGCGGCCAACAAAGT	69	-	chr3L	17743378	17743447	17743378..17743447	CG5998-RA,	FBgn0036751,	Adgf-B,	1	.
CG15374-RA	CAGGGATCCCGTATCCAGAAATCCTTCGGATTTGGCTGGTGGCAAAACCTGCGTTAGTTCCGCTC	65	+	chr3L	22158576	22158641	22158576..22158641				0	no match
CG7319-RA	GGCGTCGTCAAGCTAATTCCCCTAAAGCGCCCTAAGACTCAATTGCCGTTTCACCTAGTTGAGCGCGTA	69	+	chr3L	11703270	11703339	11703270..11703339	CG42630-RA,CG42631-RA,	FBgn0261353,FBgn0261381,	CG42630,mtTFB1,	2	.
CG4089-RA	CCGGTATTGCCCGGTGAAATACCATCCCTTCGATGCCGAGAATGTGGACAAGTACATTGTGGGGGATGA	69	+	chr3R	6641924	6641993	6641924..6641993	CG4089-RA,	FBgn0037838,	CG4089,	1	.
CG7102-RA	AGAGCTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAGTATCGCCAGCAG	66	-	chr2L	7886626	7886692	7886626..7886692	CG7102-RA,	FBgn0031961,	CG7102,	1	.
CG15711-RA	ATGACCTATGTGGCGTTCGCAGTCATGCAACCGTGTTCCATGCGAAGGAAGCAGTTGATTGAGGG	65	-	chr2R	12251491	12251556	12251491..12251556	CG15711-RA,	FBgn0034122,	CG15711,	1	.
CG14685-RD	CCACTCCCAGAACTGTACTGCAAATTGGAAGAGAGGCTCCCCAAAATGAAAGAGAACCCGGCTCCC	66	+	chr3R	6590204	6590270	6590204..6590270	CG14685-RD,CG14685-RG,CG14685-RE,CG14685-RF,	FBgn0037831,	Cap-H2,	1	.
CG12140-RA	GAACCATGGACCCTAAAACACGGTCCCCAGGATCACGAGTCCTTGAAGCCAGCTAGCTCCTGCCC	65	+	chr2R	5800459	5800524	5800459..5800524	CG12140-RA,CG12140-RB,	FBgn0033465,	CG12140,	1	.
CG2139-RB	AAAGTCTAGAGCATCAACCAATCACTGAACGTCAACTTTTGCACTCAATGTAACTATTAAAGCGATAAA	69	-	chr3R	26271473	26271542	26271473..26271542	CG2139-RA,CG2139-RC,CG2139-RB,CG2139-RE,	FBgn0028646,	aralar1,	1	.
CG15883-RA	AGCCGGTGTCTGATCCAGGATTATTTCGGTGATGATGGGAAAATCGATCTGCAGAAGGTGGGAAAGCGA	69	-	chrX	19029576	19029645	19029576..19029645	CG15883-RA,	FBgn0030985,	Obp18a,	1	.
CG13958-RA	GGCCCAGTGCCTAGTCGACATGTCCAGTACAAGATACGCAAACCACGACCTCTATCAACCCACAGC	66	+	chr2L	19828707	19828773	19828707..19828773	CG13958-RA,	FBgn0032825,	CG13958,	1	.
CG9269-RA	CAACCGCTGCAGCAAAATGAGTCCGGAAAAAACGAGGATAGCGAAAGGAGCGAGCGAGTGAGTCG	65	+	chr3R	9441782	9441847	9441782..9441847	CG9269-RA,	FBgn0038161,	CG9269,	1	.
CG5202-RA	GCGTCATTCGCATATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGCACGCC	68	+	chr2L	11991656	11991724	11991656..11991724	CG5202-RA,	FBgn0032391,	escl,	1	.
CG3164-RC	TGGTCACTACCAATGAAAGGGGAGATGCCATGATCGATGTGGAGAAGTCCGTAAACTGCACCACTGCCT	69	-	chr2L	124190	124259	124190..124259	CG3164-RB,CG3164-RA,CG3164-RC,CG3164-RD,	FBgn0025683,	CG3164,	1	.
CG10538-RA	GATTTGTGTCTCGAGTGTTTTTATATTCTTGTTTTTGCGACTAAACTTTGACGCATGTATCGGAGATGA	69	-	chr2L	19776374	19776443	19776374..19776443	CG10538-RA,CG10538-RB,CG10538-RC,	FBgn0032821,	CdGAPr,	1	.
CG8726-RA	ACTCAACTGTTCGTTAACGTCTAGACATACTCGGAGTCCTGGACTCAAACAAGTGGAAGCAACAGGACA	69	-	chr2R	3855959	3856028	3855959..3856028	CG8726-RA,CG8726-RB,CG8726-RC,	FBgn0033244,	CG8726,	1	.
CG13171-RA	GCCCTACGACTTGCTCCTGAGCCGTACCTTCAACCTAATCCAAGAGGACAGGATCAGGGAGACAAATGG	69	+	chr2R	8101614	8101683	8101614..8101683	CG13171-RA,	FBgn0033701,	CG13171,	1	.
CG13155-RA	CGGCTGGCAGATAATCCAGTTTCAATGGGTACGAGATGGCGATGAGTCCCATCCAGACACCAAGGAGTA	69	-	chr2R	8267498	8267567	8267498..8267567	CG13155-RA,	FBgn0033723,	CG13155,	1	.
CG8788-RA	ACGCCATCACAATCCTGGGCTTGATCTACTGGCTGATCTGCATGATTGCGTTCGGACCACTGATGTTCT	69	+	chr2R	5029222	5029291	5029222..5029291	CG8788-RA,	FBgn0028955,	CG8788,	1	.
CG11555-RA	AGCCCTCCACGGAAAGAAAACAACAGCTCTCCACGGACGTTGAGAACTTCACTTTTAAGGAGCGGAACT	69	+	chr2L	274310	274379	274310..274379	CG11555-RA,	FBgn0086856,	CG11555,	1	.
CG2098-RA	TAAGCAAGGCCTGAAGAACTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGAGACGC	65	-	chr3R	27636589	27636654	27636589..27636654	CG2098-RA,CG2098-RC,CG2098-RB,CG2098-RE,	FBgn0024891,	ferrochelatase,	1	.
CG9673-RA	TGGTACTGCATCCTATAAACAGCAGAAGGCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGA	69	-	chrX	16597199	16597268	16597199..16597268	CG9673-RA,	FBgn0030775,	CG9673,	1	.
CG31108-RA	AGTGCTGACACTTCACACCAATGTGACCGGTATCATGCCCTTCCTGTACAACCGATGTGGACTGTCAGT	69	-	chr3R	20939074	20939143	20939074..20939143	CG31108-RA,	FBgn0051108,	CG31108,	1	.
CG13095-RA	TCCTCAAGGAGCAGAACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCGCACCA	69	-	chr2L	8496129	8496198	8496129..8496198	CG13095-RA,	FBgn0032049,	Bace,	1	.
CG33457-RA	GCAGTGGCATACCATTGGGTACTGGCCGTTACAGCATTCGCGTGCAGGTATTTGCATATGACCAGAAGG	69	+	chr2R	12354803	12354872	12354803..12354872	CG33550-RA,	FBgn0261292,	CheB53a,	1	.
CG9692-RB	GTGGAATCACTCCCCATATCTAGGCTCAAGGTCAAGGTGGTGCTATCCCCACGTCTCAAGCGGTC	65	+	chr3L	16698671	16698736	16698671..16698736	CG9692-RB,	FBgn0036654,	CG9692,	1	.
CG9733-RA	CCCAATCAAACCCCTGGACTTTGTGTGCTCATTAATGAATGCCAGACACTCTACTCCGTGCTGAAGCGG	69	-	chr3R	26071757	26071826	26071757..26071826	CG9733-RA,	FBgn0039759,	CG9733,	1	.
CG17119-RB	AGCTCACCGTCGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGACTTTTCTGGTGTTCGC	67	-	chr3R	18881766	18881833	18881766..18881833	CG17119-RA,CG17119-RB,	FBgn0039045,	CG17119,	1	.
CG32086-RA	GGAACCAGCTGGAATTTCACAAGTACGCACTAAATTCAGTGCTGGAGAGGAGTGACACGGATGGAACG	68	-	chr3L	11576096	11576164	11576096..11576164	CG32086-RA,CG32086-RB,	FBgn0052086,	CG32086,	1	.
CG40230-RB	CACAGGGGTCGAACGGTAGCTATGCGGACGTCGGACAGGCACAAATAAGATGCACCGTGAACTAA	65	+	chr3RHet	1137614	1137679	1137614..1137679				0	no match
CG10385-RA	TTGGCTAAATATTGTTTCGTTTAACACTTCTTCTGTTTGACTTTCTGTCGCAATGATATGGAGCCTGCC	69	-	chr2L	18684079	18684148	18684079..18684148	CG10385-RA,	FBgn0005617,	msl-1,	1	.
CG1411-RC	GGGCCGGGACCGTAAATGTCAGAGGGAACCATTGTTCCGCAAATTATTCGAGAATGTTGGAAGGCACAT	69	+	chr3R	1402168	1402237	1402168..1402237	CG1411-RC,	FBgn0023023,	CRMP,	1	.
CG13108-RA	TGGGATGATCAGCAGACGAGCGACTTCATAGAGGTCAAAGTCAACTGCTTGGATCCCAACAACAGACGT	69	+	chr2L	9165028	9165097	9165028..9165097	CG13108-RA,	FBgn0032100,	CG13108,	1	.
CG15455-RA	GGCAAGAGCTTCACACTGACGATTGTCATCTCAACGAACCCCATCCAGATAGCCACCTACACCAAG	66	+	chrX	20424595	20424661	20424595..20424661	CG15454-RA,CG42267-RB,	FBgn0259162,	RunxB,	1	.
CG33188-RB	ATATGTAAATCGTGTGAAGCATACACACATATAGTTTCTTTGGGTATATGCACATTAAGGCGAAAAACA	69	+	chr3R	5185562	5185631	5185562..5185631				0	no match
CG9780-RA	GGCAGTGTGTGGATCGATGAGATCTCTAGGCAGAGCTCGAGACAGTTTTTGGGTAACATAATGCACACT	69	-	chr3R	118874	118943	118874..118943	CG9780-RA,	FBgn0037230,	CG9780,	1	.
CG6114-RA	TCACCACCAAACCCAACTAACTCATTTTAACTGCTTAGCACTGTGCAATGAGCAGCGAATATTTGCGCC	69	-	chr3L	15893952	15894021	15893952..15894021	CG6114-RA,	FBgn0036544,	sff,	1	.
CG2034-RA	GCTTCAATTTAAAATAATATTTAGGTAGTCCCACAATAAATGCTAACAAAATGCTCTCCAACCTGGTGG	69	+	chr3L	2257703	2257772	2257703..2257772	CG2034-RA,	FBgn0015359,	CG2034,	1	.
CG33174-RA	GCGGTTGTGATCAGCATACGTGGTACCCTTAGCATGAAGGACATACTTACGGATCTGAACGCCGAGGG	68	+	chrX	13697542	13697610	13697542..13697610	CG33174-RD,CG33174-RA,CG33174-RE,CG33174-RF,	FBgn0261244,	inaE,	1	.
CG4118-RA	GCATCCACAGTCTGGGCAACCTACCTCTGAAGTCCCTGGTACTTCACGGAAATAAACTCTGCCGCAACT	69	-	chr3L	16571087	16571156	16571087..16571156	CG4118-RA,CG4118-RB,	FBgn0036640,	nxf2,	1	.
CG10550-RA	TGCCATGTACAACATGTCCATCTACAACGAGCAGAGTCGGGACCTCTTTGAGTCTCTGGGTAAGCAGCG	69	-	chr3R	21132917	21132986	21132917..21132986	CG10550-RB,CG10550-RC,CG10550-RD,	FBgn0039321,	CG10550,	1	.
CG3360-RA	CCGGATAACTTCTTGGCGGAAAACATGGAACAAAAGCACCCATATGCCTACATTCCATTTGCGAGGGGA	69	+	chr3R	10348383	10348452	10348383..10348452	CG3360-RA,	FBgn0038236,	Cyp313a1,	1	.
CG12004-RA	TTATAGCCCTAGCGCCTTAGCCCTAGCTTAATGCCCCACAGTATCCCCCGAAACCAAGCTCAGAG	65	+	chr3L	1574139	1574204	1574139..1574204	CG12004-RA,CG12004-RB,	FBgn0035236,	CG12004,	1	.
CG7450-RB	TGCTGTCTTTGGCATGACTATTGTTCCTTTAAACGATATTTCTCAAAACGAATAACGAAAGCTGACGAC	69	+	chr3L	15545195	15545264	15545195..15545264	CG7450-RB,	FBgn0004396,	CrebA,	1	.
CG33177-RA	CCGGCTGATTTTGCTTAGCAAATCGAATCCCGTGATGGGTTGCTACATGTTCTGGACCAGTCTGCTCGT	69	+	chrX	14975625	14975694	14975625..14975694	CG33177-RA,	FBgn0053177,	CG33177,	1	.
CG11504-RB	GGCCCAAGAGCTGGAGAAACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAGCT	69	+	chr3R	25824535	25824604	25824535..25824604	CG11504-RB,CG11504-RA,CG11504-RC,	FBgn0039733,	CG11504,	1	.
CG40088-RA	GAATTGGAGAATATAATAAAAAAAAGATCGAATTGTGGTCATTTCGCTTTGTGGACCGTATGGGT	65	.	.	.	.	.				0	no match
CG11400-RA	AGCCATCCGACTGGAATCCAGACTTAAGGAAATCGAGCGAGAAATGGCGGAGGTGACTAGAGCCACAAA	69	+	chr2R	13021852	13021921	13021852..13021921	CG11400-RA,	FBgn0034198,	CG11400,	1	.
CG6223-RA	CTTCACCGACCTGCACGAATATCTCAAGCACCTGCTGAAGAGCACCAACATGAAGTGCCTCACGC	65	-	chrX	18276127	18276192	18276127..18276192	CG6223-RA,	FBgn0008635,	betaCop,	1	.
CG15807-RA	CCCGTCCTGGTGACCTGTGAACCTAAGATCCTTGAGGACATTTTCACGTCTCCCAATTGCAGCAACAGG	69	-	chr3R	8060019	8060088	8060019..8060088	CG15807-RA,	FBgn0038005,	Cyp313a5,	1	.
CG14283-RA	ACACGATTTAAGTGTAGCTCTTATTTAGTGTAAATATTGTGATTATCAATTAAAATGTTGCTGAAACAG	69	-	chr3R	14920525	14920594	14920525..14920594	CG14283-RA,	FBgn0038678,	mRpL55,	1	.
CG11786-RA	CCAGCTCCGTTCATTCCCTACCATTCGCACGACTCCATTCTGGAAAAGCTTAAGTCCAAGATCAATCTG	69	+	chr3R	20872690	20872759	20872690..20872759	CG11786-RB,	FBgn0039264,	CG11786,	1	.
CG9948-RA	CAGGAGGCGACCATCCAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAGGATGGGGATGTT	69	+	chr3L	6949717	6949786	6949717..6949786	CG9948-RA,	FBgn0035721,	CG9948,	1	.
CG14313-RA	GGAGGACACCTTTAGCATCATGCAGCAGCGCAATATGTCGCCGGAGTCTATGAACTACCAGCCACG	66	-	chr3R	14017085	14017151	14017085..14017151	CG14313-RA,	FBgn0038579,	CG14313,	1	.
CG31678-RA	AGCGCGCCCTTAACAACCTCTTTCGCAAGGCCTTCGATTTTTAACTAGAACCCAGTGTTTCGACTTGTT	69	-	chr2L	20659587	20659656	20659587..20659656	CG31678-RB,CG31678-RC,	FBgn0051678,	CG31678,	1	.
CG33217-RA	TTTGCTCTCATCAAAAATCAACAGTTCAGAGAGTTTACAAGGACAACCCCTAGAAATTTTGAATGGCAA	69	.	.	.	.	.	CG33217-RA,CG41454-RA,	FBgn0053217,FBgn0084017,	CG33217,CG41454,	2	.
CG32103-RA	CGGCATCGATTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAATCACGACAACAACGAGCA	69	-	chr3L	12397566	12397635	12397566..12397635	CG32103-RB,CG32103-RC,CG32103-RA,	FBgn0052103,	CG32103,	1	.
CG3026-RA	GACCTGGGGTTGCTCAAGTTTCGGGCCCTATATGAGGATTCCGCAAAGAATGCCCAGCTCACAGT	65	+	chrX	836204	836269	836204..836269	CG3026-RA,	FBgn0040347,	mus81,	1	.
CG15321-RA	AGCATCGCCAACATCATCGATTACAAGATCCCAAAACACCAATACCAAAACCAAATCCCAATCCTCGCC	69	-	chrX	9577012	9577081	9577012..9577081	CG15319-RC,CG15319-RD,CG15319-RB,	FBgn0261617,	nej,	1	.
CG3441-RA	ACTCCGCCGCGTATCACAGCACTGCATCGACGAGAATTTCGACGCAACTCGCAAAATTACGAATACTAA	69	+	chr2R	20926831	20926900	20926831..20926900	CG3441-RA,CG3441-RB,CG3441-RC,	FBgn0035092,	Nplp1,	1	.
CG33484-RA	GCCCCCGCGTCACTTATTCGTCTTGTGGGCTGATGATGGACTTACAAAATGTCGCCCAAAACAACCCAT	69	-	chr3L	2122693	2122762	2122693..2122762	CG33484-RA,CG33484-RB,CG33484-RD,	FBgn0052311,	zormin,	1	.
CG31467-RA	AGCACTATTTGCGACTGGTCGAGTTTATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGG	69	-	chr3R	6532029	6532098	6532029..6532098	CG31467-RA,	FBgn0051467,	CG31467,	1	.
CG13218-RA	TGCGATCTTCAAGTGCATTTTTTGTTATTACTGGCAATTGGCGCTTGGCGGACTGAAGCCCATTCCCTG	69	-	chr2R	7121134	7121203	7121134..7121203	CG13218-RA,	FBgn0033587,	CG13218,	1	.
CG33207-RA	TTCCATGTGGAAAAACTGTAACTCGGCACTCGTCTAATCTGGGGCAAGTGTTTGTTTAGGCGCTGGCGA	69	+	chr3R	11499209	11499278	11499209..11499278	CG33207-RA,	FBgn0053207,	pxb,	1	.
CG5653-RA	CCGATGAAAGGAATACGGGCCCCTGGGATCTAGAGTCTCCTGTGTTGGGCGAAGATGGTCATTTAGGC	68	-	chr3L	8958157	8958225	8958157..8958225	CG5653-RA,	FBgn0035943,	CG5653,	1	.
CG15425-RA	CCGGTGGATTACGAGAGGACGGTCAACCAGGTGATGCAGTACGTGAATCCCAATTTGCGCAATCCAC	67	+	chr2L	4257898	4257965	4257898..4257965	CG15425-RA,	FBgn0031591,	CG15425,	1	.
CG8773-RA	TGAGGGGTCAGGACTACTTCACCTGCCTTACCTACATCTCTGCGAATCCAGTTGGTGAGTCCCTGGTTT	69	+	chr3R	9123554	9123623	9123554..9123623	CG8773-RB,	FBgn0038135,	CG8773,	1	.
CG6116-RA	CGACATCGACTGGAAAAAGAACGTCTGGAGCTACGAACCCTGGCACCTCAACATCTGGAACAGCGC	66	+	chr2L	13288148	13288214	13288148..13288214	CG6116-RA,	FBgn0032499,	CG6116,	1	.
CG11360-RA	CGCGCATCACGTAAGCCTGTAAGCGATAGTCAGAACAATGGAATGGTAGGAAGTACGACTAGCTCCGGT	69	+	chr4	705361	705430	705361..705430	CG11360-RA,	FBgn0039920,	CG11360,	1	.
CG3249-RA	CCAAAATGGAGGGGGAAGTTAGGGATCAGCTGGGTTATGCGTTTTGTGACCACATGGCAACACATGGG	68	-	chrX	5308453	5308521	5308453..5308521	CG3249-RA,CG3249-RC,CG3249-RD,CG3249-RE,	FBgn0029764,	yu,	1	.
CG40264-RA	ACCCTGCTGCCCATATGAACCTCAACGCACTCCTTACGAAGCTTATCAACGGTGAATACCTCCATCGCA	69	.	.	.	.	.				0	no match
CG1582-RA	GGCCTGATGAAGGAGAAGTGTTTCGACTCAAACCGCAACATGGAGTCACTGGACCTAGTCTGGGT	65	-	chrX	10790469	10790534	10790469..10790534	CG1582-RA,	FBgn0030246,	CG1582,	1	.
CG14299-RA	CGGGCCGTACCTCATATGGTCTGCCGACTCATCAGCATCTTCTACGAGGAGAGCTACCTGACAACCATT	69	-	chr3R	14576335	14576404	14576335..14576404	CG14299-RD,CG14299-RC,	FBgn0038651,	CG14299,	1	.
CG11348-RB	GCAAGGGCCGTTATGTAATCGTAAAGGAAAGAAATGCAAATGAAGGCCTAAAAACTCTGTTAACTCTGC	69	+	chr3L	4429763	4429832	4429763..4429832	CG11348-RB,	FBgn0000038,	nAcRbeta-64B,	1	.
CG40176-RA	GCAGCAACAATAAAACAGCATCAAAAACACGACCAACAACTCCAGCAACTTGTCAAACAACCAGGCCAC	69	-	chr2L	20268031	20268100	20268031..20268100				0	no match
CG30424-RA	ACTGATTCAGGGTCGACTCGTGGATGCGCAAAACTTTTTCGTCGTGGACAGGCTTCGTTCTTGGC	65	-	chr2R	20854125	20854190	20854125..20854190	CG30424-RD,	FBgn0050424,	CG30424,	1	.
CG40498-RA	TCCAACAGGATCCGTGAGGCGAAAATACCACCATCCTCGTAATGCAGTTAGTTCTGGCACCGGAATGCT	69	-	chr2RHet	54079	54148	54079..54148	CG40498-RF,	FBgn0069969,	CG40498,	1	.
CG13061-RA	AGCCAATCAGCGCTCCTGTTCAACCATAACATTTCCTGCGGATTACTTCAACCACAAGTTCTGTGCCCT	69	+	chr3L	16311609	16311678	16311609..16311678	CG13061-RA,	FBgn0042201,	Nplp3,	1	.
CG31079-RA	CCCCGCTGTCGACTTTTTGTTAACAGTTTCTGTTGCCTCCCCTCCTGTATTCTTTCTTTCGCTTCTGGT	69	-	chr3R	22556785	22556854	22556785..22556854				0	no match
CG1598-RA	CCCGCTTCAAGATTCAGGAGAAGTACCTGGACCAGATTGCCGACCTGTATGAAGACTTCCACGTAACCA	69	-	chr2R	3425982	3426051	3425982..3426051	CG1598-RA,	FBgn0033191,	CG1598,	1	.
CG40191-RC	TGGCATCGGGATGTGGAAACTGCCTCAGATTTCACCATGACAATTAGCAGTCAGGTATCCGTTTCAAAT	69	+	chr2RHet	392224	392293	392224..392293	CG40191-RB,CG40191-RA,CG40191-RD,CG40191-RC,	FBgn0058191,	CG40191,	1	.
CG15479-RA	ACCGAGGCCATCCAAGACATCTTCAAGTACCACGTCAATATGGTGCGAAAATTCCCGAAGAAGGAGCGT	69	-	chr2L	13234268	13234337	13234268..13234337	CG15479-RA,	FBgn0032493,	CG15479,	1	.
CG7342-RA	CCATTCTTCTACCTCATCGTGCCTGAAAGCATTCAGTGGCTGATTTCCAAGCAGAAGTATGACAGCGCA	69	+	chr3R	15430757	15430826	15430757..15430826	CG7342-RA,CG7342-RB,	FBgn0038716,	CG7342,	1	.
CG40315-RA	CTTCTTCCTTCCTTCCTTCCTTCGCGAGTTATCAGTGTGGACACGAGGGGGAAGCCAGTGGGGCG	65	-	chr2RHet	759648	759713	759648..759713				0	no match
CG2707-RA	GACAGCGTCTCCTCCATACGCAACCTGTCGTCGTTCAGCAACAGCTCCATTCGTCGCTCCATTGG	65	+	chrX	2618985	2619050	2618985..2619050	CG2707-RA,	FBgn0000927,	fs(1)Ya,	1	.
CG2984-RA	CCCATGCCGTGCACTATATATTCCAGCGCATTCAAAAGGTTCAGGACTCTGAGGCAACACCAGTG	65	-	chrX	4575834	4575899	4575834..4575899	CG2984-RA,	FBgn0022768,	Pp2C1,	1	.
CG31065-RA	CCGCCTTGCGAATAGTGGAGACCATTGTTATCTGTCTGCGGTACAGAAAAACGATTGTGAAGTGGGTTA	69	+	chr3R	22990728	22990797	22990728..22990797	CG31065-RB,	FBgn0051065,	CG31065,	1	.
CG11663-RA	GCAAACCGTGCACTTTATCGAAGTTTTATCCATTAGATTCTTGAACCGATAATGCAATCGAAAATTCTT	69	+	chrX	789131	789200	789131..789200	CG11663-RA,	FBgn0029539,	CG11663,	1	.
CG4450-RA	AGCCACACGAGGCCTTCTTCTACGTGGAACTGGTCTGCAACGTCTGGTTCTTCATCGAGGTCATCATC	68	-	chr2L	9380823	9380891	9380823..9380891	CG34366-RC,	FBgn0085395,	Shawl,	1	.
CG9108-RA	CGCCTCGCATGTATATCACCTGATGAAGAGCGACTCGTACTCCAGGTACCTGCGATCCGATATGTATAA	69	-	chrX	16735198	16735267	16735198..16735267	CG9108-RA,CG9108-RB,	FBgn0024941,	RSG7,	1	.
CG6340-RC	TAGCTTCTTCGATAGTGCGACAATCGATCAAATTTGTTATGACCACCACTGTGTGTGTAGTCCTG	65	+	chrX	15378640	15378705	15378640..15378705	CG6340-RC,	FBgn0030648,	CG6340,	1	.
CG4046-RA	ACCAGAAGTCGTACCGTTAAACTACTCTGTCTGGTTTTCAATTTGGATTAGAGCTATTTTTTACAATTT	69	+	chr2R	18495385	18495454	18495385..18495454	CG4046-RA,	FBgn0034743,	RpS16,	1	.
CG3421-RA	GCCAGCCAGTCTGCTTAAGCTGTGGTACCGAGAACTGTACGATCCACTTATACCGGATGCCTACTACGA	69	-	chr3R	16909929	16909998	16909929..16909998	CG3421-RA,	FBgn0038853,	RhoGAP93B,	1	.
CG3347-RA	AAGACTAGTTCCCAGCGAGCTTATTCTCTGTCGCCTATTCCATCTCCCAAGTCATACAGGGCTGCGAGG	69	+	chr2L	3271149	3271218	3271149..3271218	CG3347-RB,	FBgn0031513,	CG3347,	1	.
CG31411-RA	ACACACACGGGGATTATCTGGAAGCGGAGACCAATCTGCATGACTACTGGAACTTCGAGGAACAACGCA	69	-	chr3R	5570807	5570876	5570807..5570876	CG34409-RA,	FBgn0085438,	CG34409,	1	.
CG1975-RA	TCCGCTGCGCAATTAGATCCTAAGACCTTATGCTGAGATCAGCCAACACTGTACTCCCATCTAACCAAA	69	+	chr2R	5188703	5188772	5188703..5188772	CG1975-RA,CG1975-RB,	FBgn0028408,	Drep-2,	1	.
CG32109-RA	TCGACACTATTCCCAAGACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTTCCA	69	+	chr3L	12739090	12739159	12739090..12739159	CG32109-RA,	FBgn0052109,	CG32109,	1	.
CG15671-RA	GTTGTCCGTTTAACCTTAGTTACCCATTTAGTTACTACTCGCACACACTTACATTCATGAGCACG	65	-	chr2R	17243441	17243506	17243441..17243506	CG15671-RA,	FBgn0000395,	cv-2,	1	.
CG40496-RA	GCTGGAGAGAGCGAAATTTAAATTACGAAAATTGAGTTCAAACTTTTCTCGCCTTTATAAATCCT	65	-	chr2RHet	1715133	1715198	1715133..1715198				0	no match
CG8630-RA	TGCACCCTCTACACAATCCCAATCTCGCACTTGTCGTTCGGGGATAATGAACACATCTGCCACCCTCTC	69	+	chr3R	9109977	9110046	9109977..9110046	CG8630-RA,	FBgn0038130,	CG8630,	1	.
CG17510-RB	TTGGTAATGCTCGTATCAAGGAGTATACGTCTGGCTTAAAATACTGCCGAGCTTTTCTTGACATCGAGT	69	-	chr2R	1491774	1491843	1491774..1491843	CG17510-RA,CG17510-RC,CG17510-RD,CG17510-RE,CG17510-RF,	FBgn0039969,	Fis1,	1	.
CG17161-RA	CAGGAGGCTCGGCTCAGTTACTCCTTCTCGCAACCAGCTTTGCTTGATGATCTCCTACTGGCTACC	66	+	chr2L	16699191	16699257	16699191..16699257	CG17161-RC,CG17161-RB,CG17161-RA,CG17161-RD,	FBgn0261278,	grp,	1	.
CG5742-RA	TCCCACACATTTCATGTCGCGTTTAGTGATCACTCCAGCAAAAGTCGGAGGATACAGCTCGAACGCGG	68	-	chr2R	14036939	14037007	14036939..14037007	CG5742-RA,	FBgn0034304,	CG5742,	1	.
CG7744-RA	TGTCGAAGCAACGGATGGAACAGCAGGCTTGGTCCTCGAACTATGGAGATGCCTCTACAGTGGTTG	66	+	chr2R	15342046	15342112	15342046..15342112	CG7744-RA,	FBgn0034447,	CG7744,	1	.
CG14113-RA	ACGATCAAAGCGCAATTTTAATTATTCGAAAATATGTAAACAAGTTTCGCAATAGTTGGCAATGGCTAT	69	+	chr3L	13322684	13322753	13322684..13322753	CG14113-RA,	FBgn0040814,	CG14113,	1	.
CG1636-RA	ACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGCCCATTTGGTTGTGGTACGGCCTCTCCATT	69	+	chrX	8168931	8169000	8168931..8169000	CG1636-RA,	FBgn0030030,	CG1636,	1	.
CG15370-RA	GCAGCACAGACCACATGGCTACGACTACGAGGATCACCATGAGCCCAGTGTGGAGACTTATCGAGTGAT	69	+	chrX	9119922	9119991	9119922..9119991	CG15370-RA,	FBgn0030107,	CG15370,	1	.
CG8736-RA	CGCCGACCAGGAACCCAATTGGAAGTTTGAGCTACGACTCCATAGTCCAATTCGGCAAGGATTACCATA	69	-	chr2R	4482424	4482493	4482424..4482493	CG8736-RB,	FBgn0033308,	CG8736,	1	.
CG32183-RA	ACCACTGGCAGCAAAACACATAGCGTAAACGATTCGCACGCAAACTATAAGATAGAATTCGATCGGCCG	69	+	chr3L	17741101	17741170	17741101..17741170	CG32183-RA,CG32183-RB,	FBgn0052183,	Ccn,	1	.
CG13404-RA	TCCCAGCTATCGCAAGTGCCAGGAGCTCAAGGTGAGTCCACCGCTTTATATAATCCCCAAAACCCC	66	-	chrX	14160087	14160153	14160087..14160153				0	no match
CG17443-RA	TGGGACGTTGGAGTAGACACAAAATCAACTGATGGTCATCTTCTCTCCAAGTCCACTGCCCCATTGAGT	69	+	chrU	1317936	1318005	1317936..1318005	CG41520-RA,CG41520-RB,CG41520-RC,CG41520-RD,	FBgn0087011,	CG41520,	1	.
CG7303-RA	TCCTGGCGAGAATTTACGGCAAGAGCAAGCAGTTCCAGAACCTCATCGACAAGTTCCTAACGAAGAGCA	69	+	chr3L	11745350	11745419	11745350..11745419	CG7303-RA,	FBgn0041231,	Gr68a,	1	.
CG17472-RA	CTACAAGTTCTCTAATCAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACCACC	69	+	chr2L	20635003	20635072	20635003..20635072	CG17472-RA,	FBgn0032868,	CG17472,	1	.
CG4124-RA	GGGCCTTTTAGTGTGGGTACTTTGCATTATAATGTATCAATCGTGGCGGTGTTATCCCCGGATCGAGTT	69	+	chr2L	873735	873804	873735..873804	CG33526-RB,CG33526-RA,CG33526-RC,	FBgn0053526,	PNUTS,	1	.
CG32065-RA	CGCAAAAAAAGGCCATAAAAAGAGACGAGTCTGAGCTGAGAAGTGAAACCAACTTTGTTAGGCGGCGTC	69	+	chr3L	10438575	10438644	10438575..10438644				0	no match
CG9841-RA	GCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAACTTTGGATTTGGGCTTTAGTGGACTT	69	-	chr2R	17273497	17273566	17273497..17273566	CG9841-RA,	FBgn0034627,	EfSec,	1	.
CG2079-RA	CAATAGGTTTCTTAAGTGTTGTTTTCGATTGCACCTCCTCTCAATAACCCAAATAAGAAACCCGCCCCA	69	+	chrX	7222622	7222691	7222622..7222691	CG2079-RA,	FBgn0029944,	Dok,	1	.
CG9378-RB	TTCAGCTGTTTTGTTCGGTCGAAAAAATGTCTTCGGCGTTAATAAAATGTTTAAATTTGGCAAAA	65	-	chr3R	5341549	5341614	5341549..5341614	CG9378-RA,CG9378-RB,	FBgn0014023,	Rlc1,	1	.
CG9578-RA	GTGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGAAGTCCAAGCAGTTG	65	+	chrX	20065325	20065390	20065325..20065390	CG9578-RA,	FBgn0031094,	CG9578,	1	.
CG3732-RA	GCGGCGTGGTAGAGTACAAGGATCGTCAGGATTCGGATAGCGAGTACGATGAGTTCGGTCGTCGCAAG	68	-	chr2R	18526893	18526961	18526893..18526961	CG3732-RA,	FBgn0034750,	CG3732,	1	.
CG15784-RA	TTCCTTCAATACAACCTCCCACACATATAACCTTCAATATTACTATACATTTAACACCCAGAAGCTTCT	69	+	chrX	5326410	5326479	5326410..5326479	CG15784-RA,	FBgn0029766,	CG15784,	1	.
CG14634-RA	CATCTTCGGCACTTCTACTTATTATTTCTAGCCACAGAAATATGTGCTTTCTCTTCCCACTTGGCT	66	+	chrX	756783	756849	756783..756849	CG14634-RB,	FBgn0040892,	CG14634,	1	.
CG33320-RA	GCGATTGGCCTCCGTGAAGCTTTCGATATGAGGAATATAGTGACCGAGCTGGACATAGATGGCCTTCAT	69	-	chr2L	20818346	20818415	20818346..20818415	CG33320-RA,	FBgn0067312,	CheB38a,	1	.
CG31642-RA	TGGGAAACTATTGCTGTATCCTGTTAAGACCAAGGAATTGATGGAACGCTTCTACAGGGGTCTCGCCGA	69	+	chr2L	6120022	6120091	6120022..6120091	CG31642-RA,	FBgn0051642,	CG31642,	1	.
CG3598-RA	TTACAGGCAGAACCACGCTGATGACGAACAGGACGATGATCAGGATCAGGAGCAGGATCACGTTCAGG	68	+	chrX	2831468	2831536	2831468..2831536	CG3598-RA,	FBgn0025645,	CG3598,	1	.
CG31316-RA	TTGACGTTGTTGCAGGAATGACGAAGGGGACGTGAAATTTGCATATAAGCGAGTTGGCTCAAGGTGTGT	69	-	chr3R	10511585	10511654	10511585..10511654				0	no match
CG1529-RA	TGTTCGCTTACTTCGTATTTTATACGTTTTATATGCTCGCTTACTCCATATTTTAAGTGCCTAAT	65	-	chrX	20899693	20899758	20899693..20899758	CG1529-RA,CG1529-RB,	FBgn0031144,	CG1529,	1	.
CG15252-RA	CCTGGAGGCCTAGATGTGCAAGGTCTGATTCAAACGGGAACCTCGCTGATCTCTGGTCTTCTGGG	65	-	chrX	9872957	9873022	9872957..9873022	CG15252-RB,CG15252-RC,	FBgn0030167,	CG15252,	1	.
CG30410-RA	ACATGTTATCTGGGTTTTTGCGACGAGGCGTCCAAAGAGCACGGTTCACCTTCACCCAGCAACTC	65	+	chr2R	19242757	19242822	19242757..19242822	CG30410-RC,CG30410-RB,	FBgn0050410,	CG30410,	1	.
CG40241-RA	GGATGCAACCCTTATCAGCTGCACCCGGAAAGTTTTGGGATAATTCGGTTATCGCAAAAATAGTGGGTT	69	+	chr2RHet	42877	42946	42877..42946				0	no match
CG11455-RB	GGGGCCAGAGACTGCTAACGGCTTGAAGGCTTAAACCCCTTGTTTATTGTTACGTCACAGTGTGTGTGC	69	+	chr2L	155485	155554	155485..155554	CG11455-RB,CG11455-RC,	FBgn0031228,	CG11455,	1	.
CG5890-RA	ACCTTGCTGAGAGGTTCTGTATATGAGCGTCTGCGTTGGACCTTCAAGTTGTACGATCTGAACGGC	66	+	chr3R	21694335	21694401	21694335..21694401	CG5890-RA,CG5890-RB,	FBgn0039380,	CG5890,	1	.
CG3379-RB	ACTTAACTACATTCAAAATACTTGATCCAATTGAATCTTAATCAGTAGTATTCAACGCAAACTTAACCG	69	+	chr3R	10452189	10452258	10452189..10452258	CG3379-RA,CG3379-RB,CG3379-RC,	FBgn0013981,	His4r,	1	.
CG3096-RA	AGACTCCAACGGATTCGGTCTCTAAACATCATCCGCAACAGCTTTAACTCTCCACACTGTGCAAGTGGA	69	+	chr3L	14966136	14966205	14966136..14966205	CG3096-RA,	FBgn0000216,	Brd,	1	.
CG31536-RA	AGATGCCGTTCAGAAGGAGTTCGTCTTCAAGCTTTCCTTTAAGAACCACGTCTACTTCTTCCGCGCGGA	69	+	chr3R	768420	768489	768420..768489	CG31536-RE,	FBgn0051536,	Cdep,	1	.
CG15878-RA	CCTGGCCGATTGCTGTGAGACTTTCTGGTTGATGAATCGCGTCTTCCAGATCGAGGATCACGTGCAG	67	-	chr3L	2211635	2211702	2211635..2211702	CG15878-RA,	FBgn0035316,	CG15878,	1	.
CG15445-RA	TGCTTTGCTGAACCTCGACATAGTGTGGTGCTATTTTTGCCTGAAGAACGTTACCCAGCTCCCGGATGC	69	+	chrX	20990085	20990154	20990085..20990154	CG15445-RC,CG15445-RA,CG15445-RB,CG15445-RD,	FBgn0031161,	CG15445,	1	.
CG31029-RA	GGCTACGATGATCCCCGGAGGTTCGATCCAACCCCACTAAACAGACCTTGGCACAAGTCTAACTGACAT	69	-	chr3R	25955099	25955168	25955099..25955168	CG31029-RA,	FBgn0051029,	CG31029,	1	.
CG6477-RA	CTTGGACGAGTCCGATCTGAGCCCCAGTCTGCTCTACTGCCTGGACGGAAATGAGCCAACTTTAG	65	-	chr2R	13474360	13474425	13474360..13474425	CG6477-RA,	FBgn0034249,	RhoGAP54D,	1	.
CG11839-RA	GCGAAGAGTAGACCCCAAGATGGAGGTCGATCCGGAATTGAGTTCAAGCGAAGAAGATTGCAGTGTGGA	69	+	chr3R	20896494	20896563	20896494..20896563	CG11839-RB,	FBgn0039271,	CG11839,	1	.
CG3898-RA	GGTTTGGATCAAAACGAATCGGACAGGATTTCCGCTGTCATCGGGACCATAGATGCGTCCGCCAG	65	+	chrX	8812651	8812716	8812651..8812716				0	no match
CG17378-RB	AAAGCCAAACTAATCAGAGACAATATATATCGAATGTACCATGAGACGCAACTTTGGGGAGCTCGACAC	69	+	chr2L	6777658	6777727	6777658..6777727	CG17378-RB,CG17378-RA,	FBgn0031858,	CG17378,	1	.
CG12234-RA	TAGCTTAGACGATGAGTTCGCACTTTTTCTCGCCCTTGTCCAAGACCATGACCCAGTCCGTGTCC	65	-	chrX	19541338	19541403	19541338..19541403	CG12234-RA,	FBgn0031051,	Ranbp21,	1	.
CG6054-RA	CATGGATCGCCAGATGAGCGTCTTCGAACTGTTTCCCGAAACGCTGCTAAACCTACAGGACGATCTGGA	69	-	chr3R	8516393	8516462	8516393..8516462	CG6054-RA,	FBgn0005355,	Su(fu),	1	.
CG9768-RA	TCCATCTTCGTGCCCATGTACTCATACCTTTATGGCTACTGAGAGGGAAATCCTGGCGAGCTTTCCCCT	69	-	chr3R	171239	171308	171239..171308	CG9768-RA,	FBgn0261434,	hkb,	1	.
CG9717-RA	AGTGGCGCAGGTCTTCGAGGGTCTGAACAAGGATCTGGTGGTCATATACGATATTAACACCCTGCACGC	69	-	chr3R	26410300	26410369	26410300..26410369	CG9717-RA,	FBgn0039789,	CG9717,	1	.
CG32155-RA	CGCTTCAGAGGCTGGCATCTCATCGCCCATCATAGGGGTTCTCACACAGGAAGTTTACGTCGATGGTTT	69	+	chr3L	16227926	16227995	16227926..16227995	CG32155-RA,	FBgn0052155,	CG32155,	1	.
CG6044-RB	TGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCCAGCGGAATGAATATATTCAACCA	69	+	chr2R	18294960	18295029	18294960..18295029	CG6044-RA,CG6044-RD,CG6044-RF,CG6044-RE,	FBgn0034725,	CG6044,	1	.
CG3074-RB	CCTGGCCCTACGTCTACAGCTACTACAATGTGAAGTCGGCTTAAGGGGAATCAGAGGGCCTACGC	65	-	chr2R	18077843	18077908	18077843..18077908	CG3074-RB,CG3074-RA,	FBgn0034709,	CG3074,	1	.
CG12428-RC	CTGCTCTGATGCGACAGTACTACAATGGACGAACAGAGACCCTGCGATCATGCACTTCCGCTGTGG	66	-	chr3R	23529965	23530031	23529965..23530031	CG12428-RD,CG12428-RE,CG12428-RA,CG12428-RC,CG12428-RB,	FBgn0039543,	CG12428,	1	.
CG31423-RA	AACGCTATGGACAACATGAGGCAGGAGAGGATCATACTGTGGAGCGAAAGGGAACCCACGAAGATGTTG	69	-	chr3R	17944789	17944858	17944789..17944858	CG31423-RA,	FBgn0051423,	Ir94c,	1	.
CG7383-RA	CACCCTGGTGAGGTCACAAACGTTGACAGGCTAAGATTATCTCGTGATTGCCGGAGAATTCGCTCGCGT	69	+	chr3L	21810387	21810456	21810387..21810456	CG7383-RB,CG7383-RA,	FBgn0000560,	eg,	1	.
CG7354-RA	TGCTCGAGATTGAGCGTTCCAAGAACTATATCACTAGGGAAAACTTGGATGCAGCCATTGAGACAGCGT	69	+	chr3L	18100344	18100413	18100344..18100413	CG7354-RA,	FBgn0036774,	mRpS26,	1	.
CG2225-RE	AACACTTTTCTAGGATCCACCACGCGAAAGGATACCAATCGCAAAGACAATGGAGCCTCGGGGGC	65	-	chr2L	21665543	21665608	21665543..21665608				0	no match
CG6057-RA	ACGGAAAAAGTGCAATCCACCAATGAGGAGTTTGAGAATGCGCGCAAGAAAGCAAAGAGGGCCAA	65	+	chr3R	19887747	19887812	19887747..19887812	CG6057-RA,	FBgn0040283,	SMC1,	1	.
CG40442-RA	TCATTCCAGGGGGGGAGGAGTTACCGATATCGCAGTACAGAGTATACACGATACCAACACGGTACCAA	68	-	chrYHet	214893	214961	214893..214961				0	no match
CG1143-RA	AGCGATGGCAAGCAGACCAAGATTAGCATCACCAAAACATCGATTACGTCCACGGCGCCAATTGAGAGT	69	+	chr3L	2646160	2646229	2646160..2646229	CG1143-RA,	FBgn0035359,	CG1143,	1	.
CG40410-RA	GTTCGTCGTTTACATTTATGGCTAGACAATCATTTAATAAAATCTTCTAAACTGAGGGAGTGATTCGGA	69	-	chr3RHet	1897079	1897148	1897079..1897148	CG40410-RD,	FBgn0086378,	Alg-2,	1	.
CG40341-RA	GCCGGAAAAGCGTCGGGAAAAATGAGGGAGGAAAATATATGGCATACACTTAGGCGCGCCAAGTCGGAT	69	.	.	.	.	.				0	no match
CG13289-RA	GCCCACTATCTGATCCTGCGGACGCAAAGGGGCTACAAGATAAAGGGCTTCACCAAGGAGTTCAGT	66	-	chr3L	5927070	5927198	5927070..5927091,5927153..5927198	CG33993-RA,CG33993-RB,	FBgn0053993,	CG33993,	1	.
CG10375-RA	TAACTCCTTCTCAACAAATTGATCGTTTACTTCGTCCAGGTTCAACGTACTTCAATCTCAATCCGTTTG	69	+	chr3R	19593761	19593830	19593761..19593830	CG10375-RA,	FBgn0039116,	CG10375,	1	.
CG6364-RA	CCCAAGATACGAGAACTGTTCCACATGAAGCTGTTCGTGGACACAGACTCCGATACCAGGTTGGC	65	+	chr3R	20116536	20116601	20116536..20116601	CG6364-RA,CG6364-RB,	FBgn0039179,	CG6364,	1	.
CG9688-RA	GTCGTCCGACTTGGATCTGCCGATCGACATAAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCT	69	+	chr3R	26249892	26249961	26249892..26249961	CG9688-RA,	FBgn0039765,	mRpS18C,	1	.
CG11671-RA	TGCACTCGAAGCAGTCAAGTCCTATATCACTGATCGTATGGGAATGACCATCGTTGATTAGGCATTAAT	69	+	chr3R	4114179	4114248	4114179..4114248	CG11671-RA,	FBgn0037562,	CG11671,	1	.
CG40397-RA	ACGAGCTCGCAATTGCAGAGAAACCACCATTTGTGTTGCTAATAGTGCAGACAAAGGTAGTCAGGCATA	69	-	chr3L	23855289	23855358	23855289..23855358				0	no match
CG1981-RA	GCTCACCACCAGCATTTGAGTCCACGACTTGGAAATCAAACCCATCAGAATTCCTCCCCATCTGGTCAT	69	-	chr4	567209	567278	567209..567278	CG1981-RA,	FBgn0026869,	Thd1,	1	.
CG1470-RA	CGATCAACCAGGATGATTCGTTCCACTTGGAGTACCGCGGACCCGTTATCATGAAGGGCAAACCGAC	67	+	chr3R	26996744	26996811	26996744..26996811	CG1470-RA,	FBgn0013973,	Gycbeta100B,	1	.
CG15623-RA	TCTGGAGGAGCTAACTGCCTTCGATGGCTCGAGTCCCAGTCTACCCATTTACACCGCTCTGAATGG	66	-	chr2L	1832071	1832137	1832071..1832137	CG15623-RA,	FBgn0031367,	c-cup,	1	.
CG13791-RA	CCTACAGGACATTGGTGGATCATGGCCATCCGATTATAGTGGGAAGCAGTGAAATATCGCTGGCCC	66	-	chr2L	7578486	7578552	7578486..7578552	CG13791-RA,	FBgn0031923,	CG13791,	1	.
CG15044-RA	TCTCTACTATACGGACATAACGCCCGTGACCGACGAAACACGCTACACCACCCTCAATCCGGACG	65	-	chrX	18385773	18385838	18385773..18385838	CG15044-RA,	FBgn0030928,	CG15044,	1	.
CG2042-RA	AGTCAAAGGTAAAAATCCAGTCAACCAAAAGGTCATAAACAAAGATAAGATTGTAAGTCCTCCCG	65	-	chr2L	21360191	21360256	21360191..21360256				0	no match
CG32055-RA	GGCAGTGTCTGTGTCTGGACGAGATTACCTCCTGGTTAAATGGTCGTCACGTGTCTTACGCTCGACCCA	69	-	chr3L	10211722	10211791	10211722..10211791	CG32055-RA,	FBgn0052055,	CG32055,	1	.
CG2086-RA	CCGGGCGAGTGTAGCTCTGACCTTAGTCCTGATGACCCTGTTTGCGTGCATAATCTTCGCAGTGTTCAT	69	-	chr3L	1717235	1717304	1717235..1717304	CG2086-RB,CG2086-RA,	FBgn0027594,	drpr,	1	.
CG6623-RA	GTGGCACTCAGAAGTTCCTGCAGGTGATCATGAAGGGCATGGAAGCACATCTCCTTTTGCAGCACG	66	-	chr3R	11041533	11041599	11041533..11041599	CG6623-RA,	FBgn0038303,	SIDL,	1	.
CG4080-RA	AAGCAGCGGAATTCCCATCAGCTTGTGATCTCCTCATCCTTTGACCGCGGAGTGAATGGGGTCAG	65	-	chr3L	9381002	9381067	9381002..9381067	CG4080-RA,	FBgn0035983,	CG4080,	1	.
CG9594-RA	GCTTCCGGCAAGCTAGATTTACTGTCAAAGATGCTAAAACAGCTAAAGGCGGACAATCACAGGGTCCTT	69	+	chr3L	19442097	19442166	19442097..19442166	CG9594-RA,	FBgn0023395,	Chd3,	1	.
CG11626-RA	GGCTGACTTGGCTCACTTCATACGCCACCAAAAGTCAAATGACCCCGAAATGGAGGACTCCAAAGTCAT	69	+	chr3R	15235232	15235301	15235232..15235301	CG11626-RB,	FBgn0038705,	CG11626,	1	.
CG6199-RA	TGCCAAAGAGTATGCTACTGCCAAATTTGCTCTTTCCACTGACGAGTTGGATGAACGCCAGGGCA	65	-	chr3L	11195734	11195799	11195734..11195799	CG6199-RA,CG6199-RB,	FBgn0036147,	Plod,	1	.
CG9165-RA	ACCGGTGCAGTTTGGAGCCTGGATGGTGCAATAGAGATACGGAACCATCTGGCATGTGCCTTAAATGAA	69	+	chr3L	1338036	1338105	1338036..1338105	CG9165-RA,	FBgn0010786,	l(3)02640,	1	.
CG15386-RA	CCAAAACCTGCAATTTGGAAATTCATCAAAGGAAGTGCCAAAACACTGTTTGTCCTCGAGGCAGTCTGC	69	-	chr2L	2217058	2217127	2217058..2217127	CG15386-RA,CG42371-RA,	FBgn0040715,FBgn0259717,	CG15386,CG42371,	2	.
CG15475-RA	CTGGCCAAGGAGAAAGTTCCGAAAATGAATGCCAAACGGTTCACCAGACCATCCAAGACCCAGGC	65	+	chr2L	20614779	20614844	20614779..20614844	CG15475-RA,	FBgn0032867,	CG15475,	1	.
CG9652-RA	CCGCTGATTTTCGAGGACAATGGCAAAAAGTATCCAACATGCGCTCTGGACCTCACGCCCACCTA	65	-	chr3R	10005994	10006059	10005994..10006059	CG9652-RB,CG9652-RC,CG9652-RD,	FBgn0011582,	DopR,	1	.
CG31948-RB	CCGCTGCCAGTCAATGCTGAAGCTTAACGACCACAAGATGAACATGGAGTTGCCCAATGAAGTTCGGC	68	-	chr2L	2416281	2416349	2416281..2416349	CG31948-RB,CG31948-RA,	FBgn0051948,	CG31948,	1	.
CG3136-RA	CCAGTTAGCAAAACCCAAAGAGTGCGTAATTTTTACAAGGTGGGCTCTAGAAATCAAGCTACCGTCGCA	69	+	chr2R	1041430	1041499	1041430..1041499	CG3136-RC,CG3136-RA,CG3136-RB,	FBgn0033010,	Atf6,	1	.
CG1643-RA	TTATCGGTGGACTACAAGGATGTTTAGCCTTATCCCTATATGTATATAGCCCTATGTTTTGCCCAGTTC	69	-	chrX	7209122	7209191	7209122..7209191	CG1643-RA,	FBgn0029943,	Atg5,	1	.
CG10505-RA	GCGACGAGTCCCTGTGGAGTGCATTGGATGACGTCAAACTGAAGAAGCATGTTGCCTCATTGGAAGGAG	69	-	chr2R	17173708	17173777	17173708..17173777	CG10505-RA,	FBgn0034612,	CG10505,	1	.
CG6096-RA	CAGATCAGCTCAGCACATTTCTACAAATCTTCCAAAACAAAAAACACATTACAAAATGGCACCACAGAG	69	-	chr3R	21855360	21855429	21855360..21855429	CG6096-RA,	FBgn0002631,	HLHm5,	1	.
CG9552-RA	ATAACTCAAAAAGCGCTGCTGAAGTCAGTAGCCGGCTAAACGCGACTCGGATCGGAAGTCTCCGC	65	-	chr2L	8989139	8989204	8989139..8989204	CG9552-RA,	FBgn0011705,	rost,	1	.
CG15549-RA	ATTCGACGTGTGGCAAAAAGTGCAGTATGTTGGCCAATCTGTTGACCCTAAGCTGCCTTCTGGCC	65	-	chr3R	26762141	26762206	26762141..26762206	CG15549-RA,	FBgn0039810,	CG15549,	1	.
CG33259-RA	TCGGCGGTAAAGTGCTTTGCTGAGAAAGTCGATTGTTCAGTAAATGGAACTCAAACGGATTGCCCCACA	69	+	chr3L	15400993	15401062	15400993..15401062	CG33259-RA,	FBgn0036495,	CG33259,	1	.
CG11853-RA	CCGCTGGTGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATGAAGCCGGAGTCC	69	+	chr3R	21066624	21066693	21066624..21066693	CG11853-RA,	FBgn0039298,	to,	1	.
CG9424-RA	ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGATATGAGCTCCCAGTCG	65	-	chr3R	5416252	5416317	5416252..5416317	CG9424-RA,CG9424-RB,	FBgn0037719,	bocksbeutel,	1	.
CG11390-RA	CGGTTCCGGAAACTCTTGGTTATATGCACTGTTAATTAGGTCTACGCTTATATCTGATCATCAAAATTA	69	+	chr2R	19914927	19914996	19914927..19914996	CG11390-RA,	FBgn0011695,	PebIII,	1	.
CG15449-RA	CGCTGTCCATCGTCAATGGGGTGCTATTCGGATTCGATGCGGTGTTCACATTTCGCGACAAGTGA	65	-	chrX	20910742	20910807	20910742..20910807	CG15449-RA,	FBgn0031146,	CG15449,	1	.
CG8676-RC	CGACTACATCAACTAAATGGATTTGGAGGTGTACCCATTCCCTGCTCTACTTCTCTTCCAGCCAGCCCT	69	+	chr2L	21255154	21255223	21255154..21255223	CG8676-RC,CG8676-RB,CG8676-RA,CG8676-RD,	FBgn0261239,	Hr39,	1	.
CG40002-RA	GCTTTGACTTATTTGTTACATAATACTCGGTCCACATTGAGTTTTTTTTACCCAATCAACATGTA	65	.	.	.	.	.	CG40002-RA,	FBgn0058002,	CG40002,	1	.
CG15863-RA	CCCTTCTCGGGTACACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAATCTCCCA	69	-	chr2R	5846738	5846807	5846738..5846807	CG15863-RA,	FBgn0033467,	CG15863,	1	.
CG9882-RA	AGCTGCGCTCACTCACATTTTCGCTGAGCCCTACTTCCTCAATGCGATTCTACCCTGGGACAACTTCTA	69	-	chr2R	18965006	18965075	18965006..18965075	CG9882-RB,	FBgn0034817,	Art7,	1	.
CG9822-RA	GGGCTTGTGGTTTGGAGAGCACAAACTCATCGACAGCAGTTACATTACCGATTTTAAGCTGACCAAAGA	69	-	chr2R	17234767	17234836	17234767..17234836	CG9822-RA,	FBgn0034623,	CG9822,	1	.
CG31006-RA	ACAAGGACCAAAACAAAGAATTTAGAATTGTAGAATTTGTAAGGAGTTTATCTAGCAAATAAATGTATA	69	-	chr3R	26983882	26983951	26983882..26983951	CG31006-RB,CG31006-RA,CG31006-RC,	FBgn0086704,	stops,	1	.
CG41099-RB	TTACGTGATAAGTCTGGAAACACACCGTTTGCAACTGCTTTGGACTTCCGTAATCACAACGCTGCCCAA	69	-	chr3RHet	1686187	1686256	1686187..1686256	CG41099-RA,CG41099-RD,CG41099-RC,CG41099-RB,	FBgn0039955,	CG41099,	1	.
CG4622-RA	TGGTGAAACTGCAGAACGAGAACTGACGAGACCAGGGAGACGGCAATACAAACCACATCAATTCCCGC	68	-	chr2R	20420981	20421049	20420981..20421049	CG4622-RA,CG4622-RC,	FBgn0035021,	CG4622,	1	.
CG40313-RA	GCGACGCTCATGTATTCGACTGACTTCTTATGGACTTATGACTTCTTATCGACTTATGGTGCCAAAAAT	69	-	chrU	1924237	1924306	1924237..1924306				0	no match
CG8639-RA	GGTTCGGAAATCGCGTGTTTGAAAGAGGAATACAGAATAGCAGATATTGAATGTATAGTGTTGCGCCTC	69	+	chr2R	4512342	4512411	4512342..4512411	CG8639-RB,CG8639-RG,CG8639-RH,	FBgn0033313,	Cirl,	1	.
CG12256-RA	AGGAGCTGGTGACTAGTGACATTGCCATCCTCAAGATCGATCCGCCCTTTGAGCTGGACGAGAAG	65	-	chr3R	8051540	8051605	8051540..8051605	CG12256-RA,	FBgn0038002,	CG12256,	1	.
CG2261-RB	AGCAGGAGCACCAGACAGAGGCTGTATTCAACCACACAGAGGATTACGTGCTTTTCCCCGACGAG	65	-	chr3R	27561450	27561515	27561450..27561515	CG2261-RA,	FBgn0039867,	CstF-50,	1	.
CG13208-RA	CGCTAAGTTCTCCAACGATACCCTTTACGTGGAAACCATGACCATGGCGTTCTCCAAGTGTGAGCCCCA	69	-	chr2R	7189968	7190037	7189968..7190037	CG13208-RA,CG7741-RA	FBgn0033614,FBgn0033615	Obp47b,CG7741	2	.
CG30324-RA	ATGGTGGACGAGGATGGACGAAAGCGGTACTGCTACCATGGTGGAAAATGCAAGTGTGCCACTTG	65	-	chr2R	12175496	12175561	12175496..12175561	CG30324-RA,	FBgn0050324,	CG30324,	1	.
CG9025-RA	TGCAGGATGGACAGACATTGCTGCATATCGCCGTCAATGGAGTGATGCCCGTAGACGAGTTCTACACAA	69	-	chr2R	16550970	16551039	16550970..16551039	CG9025-RA,CG9025-RB,	FBgn0034542,	Fem-1,	1	.
CG9628-RA	TCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTATCTGAT	69	+	chr3L	14620505	14620574	14620505..14620574	CG9628-RA,CG9628-RB,CG9628-RC,	FBgn0036433,	CG9628,	1	.
CG2938-RB	GTGGGCTATGTGGTCCTCAGGAACATTTCGGGTATTCTACGTACACGATACTCGGCGTTCTTCGC	65	-	chrX	3827265	3827330	3827265..3827330	CG2938-RB,	FBgn0029685,	CG2938,	1	.
CG9120-RA	ACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTGCCCTAAAGGTCCTGGGTCAACAGGGCT	69	-	chr3L	1194934	1195003	1194934..1195003	CG9120-RA,	FBgn0004431,	LysX,	1	.
CG31686-RA	TGTCCACAGAGGCAACCAGTGAACCATCCACTGTGACTTCTGACGTGCCCACACTAACTTCACCATCAT	69	+	chr2L	2244826	2244895	2244826..2244895	CG31686-RA,	FBgn0051686,	CG31686,	1	.
CG6460-RA	CAACGCCCAGAGTGCCATTCAGGGTCAGTACGATCAGTTGGGAGGATCCAGTCAGTCCCAGAATG	65	-	chr3R	22453804	22453869	22453804..22453869	CG6460-RA,	FBgn0039439,	TwdlK,	1	.
CG9640-RA	GGGCACCAGTCAGAGACAACACCAACTGCGTCTAAGTAGAAGACTGGAGTGTATCTGCTCGCGCTGTCT	69	+	chr2R	12933270	12933339	12933270..12933339	CG9640-RA,	FBgn0034182,	CG9640,	1	.
CG9888-RA	TGCCGCGTGTTGACGGACTCAATCACATTTCGTCGAAAGTTGTATTAAAAAGTGCAAGTACAGCAACAT	69	-	chr2R	18962120	18962189	18962120..18962189	CG9888-RA,	FBgn0003062,	Fib,	1	.
CG14233-RA	CCAGCGGATGCCGAATGAATCTCAACAGAGCCGGATTCACACCGCTACGATAATCTAGTTGGAGCTGCA	69	-	chrX	19600539	19600608	19600539..19600608	CG14233-RA,CG14233-RB,	FBgn0040089,	meso18E,	1	.
CG15170-RA	GCAGAAACCCCCATCATCGGAGCGACTTACTCAAAGACTTGCTCAACGAACCTGTGCAATGCGGG	65	-	chr2L	18989677	18989742	18989677..18989742	CG15170-RA,	FBgn0032733,	CG15170,	1	.
CG5125-RB	ATGCTGCGCAAGACTAACTATCCGAGGGGATCCGAGACCAACACCTATGACTTTAACAATCGCCGCGG	68	+	chr2L	7383839	7383907	7383839..7383907	CG5125-RB,	FBgn0002938,	ninaC,	1	.
CG11844-RB	CGCCGAAGAGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGACCAGCGTG	65	.	.	.	.	.	CG11844-RB,CG11844-RC,CG11844-RA,CG11844-RD,CR41503-RB,	FBgn0046214,FBgn0085787,	vig2,CG41503,	2	.
CG8687-RA	CGCCGAGTTCCGACAGAAGGGTCGCGAAATATTCACAAGACGTCGTCATTCCACGCTAGTGCAATCCTT	69	-	chr2R	4452767	4452836	4452767..4452836	CR8687-RC,	FBgn0033302,	Cyp6a14,	1	.
CG11614-RA	AGGGCCAGAAACAGTGGGGTTGGTTAAGTGAGTTTGGAGTTTGGTTAACCAAAGACAAATTGAGAACGA	69	-	chr3L	18997820	18997889	18997820..18997889	CG11614-RA,	FBgn0002945,	nkd,	1	.
CG11964-RA	AACTCTACTGCAGCGAGATACTTTCCATACTTATACAAACGGAGAACGAGAACCGATTACTGCTGGGTT	69	-	chr3R	4769734	4769803	4769734..4769803	CG11964-RA,	FBgn0037644,	CG11964,	1	.
CG4004-RB	GGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATAGTGGGAACACATATAAGCCAACGCTTTGG	68	+	chrX	12639592	12639660	12639592..12639660	CG4004-RB,	FBgn0030418,	CG4004,	1	.
CG33337-RA	GACCGCCTTTTACGCCCAAAAAAGAAAGCACCAGCAGAGAATAAGCCGATGACGAACTCAGACCGAGT	68	-	chr3R	19415959	19416027	19415959..19416027	CG33337-RB,	FBgn0053337,	CG33337,	1	.
CG31361-RA	GACCTTTATAGCGGATGAGCGATTCCAATCGATATATCAGGAGGATCACGACTACACCTGGTCCCTGCA	69	+	chr3R	7935729	7935798	7935729..7935798	CG31361-RA,CG31361-RB,CG31361-RC,	FBgn0051361,	dpr17,	1	.
CG14222-RA	AAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATACCGTACACGCAGCCTGTACGACTGGAACAT	69	-	chrX	19516220	19516289	19516220..19516289	CG14222-RA,	FBgn0031043,	CG14222,	1	.
CG15497-RA	TGCCCTTCATCAAGCCGATGATTAACGAGTTGGTTAGCACGGCATTTACGGATATATTCAACGAGTCCT	69	+	chr3R	17492141	17492210	17492141..17492210	CG15497-RA,	FBgn0038894,	CG15497,	1	.
CG3340-RA	CACTGCGATCGTCAATTCGTTCAGGTGGCCAATCTTAGACGACATTTGCGAGTCCACACTGGAGAGCGT	69	+	chr2R	21115690	21115759	21115690..21115759	CG3340-RA,	FBgn0001325,	Kr,	1	.
CG9056-RA	AGCATTCAACCTAAGCACTGAGTCCCCACATTGGCAAAATACTTTCCTCGATCTTAATATGGTCGCGCG	69	-	chrX	15770814	15770883	15770814..15770883	CG9056-RA,	FBgn0260938,	tay,	1	.
CG9587-RA	GCCGTGTCAACCACAAAAGTAGAGATCATCTCACCTCCCCTGGAAGACGACTTGGGTTATGTCCTCCAC	69	-	chr3L	14501443	14501512	14501443..14501512	CG42230-RC,CG42230-RJ,CG42230-RK,	FBgn0087007,	bbg,	1	.
CG32146-RA	GCCAGAGAGTGAATGAATGTAGAAGTGAGTGCGTGTATGTCGCGGAGTGAATGCTTTTACCGAGTGTGA	69	+	chr3L	14664177	14664246	14664177..14664246	CG32146-RA,CG32146-RB,	FBgn0041604,	dlp,	1	.
CG31101-RA	CTTCTGACTCACGAAGGTTGTGTCAACCCATAACTTCGGTTTCTGAAACACTCGAATCAAACGCTCCCA	69	+	chr3R	26718655	26718724	26718655..26718724				0	no match
CG32383-RA	ACATTGTTAGTCCTATCACTAACTGTTTCGGTCGGTGAAAAAAATAAATTGAGTCCCAGGATCGCCGG	68	-	chr3L	7432422	7432490	7432422..7432490	CG32383-RB,	FBgn0052383,	sphinx1,	1	.
CG9290-RA	CACGCCACCAGCTACAGTTCGGTGACCAAGCACGAAGGACCCGTCCACAAGAGCCTGGGCTACGG	65	+	chr3L	19512866	19512931	19512866..19512931	CG9290-RA,	FBgn0036879,	Cpr76Bb,	1	.
CG33305-RA	CGCGATGAATACAGTCCGCACAGAGGTGGTGGGAGTAGTAGGAGAATGCTTAATGCCATGTCCAGACCT	69	-	chr2L	11159719	11159938	11159719..11159729,11159879..11159938	CG42403-RG,CG42403-RI,CG42403-RJ,CG42403-RK,	FBgn0259822,	Ca-beta,	1	.
CG6099-RA	ACCTCAAGAACGCCCTCAAGGCCAACTCTTTGGAGTCTCTGGAATCCATGGAAAACAGCCGCAAC	65	-	chr3R	21850023	21850088	21850023..21850088	CG6099-RA,	FBgn0002629,	m4,	1	.
CG6145-RA	AGGAGAGCTCCAAGTTCCAAAAAGTGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCC	69	-	chr2R	9426498	9426567	9426498..9426567	CG6145-RA,CG6145-RC,CG6145-RB,CG6145-RE,CG6145-RF,	FBgn0033853,	CG6145,	1	.
CG6009-RA	TGTCTAACTACGCCCATGCAATCGGCAGCTGTTATTGATTAGAGGAGCGATAAAAGTCCAGCCACCTCA	69	+	chr3R	14854691	14854760	14854691..14854760	CG6009-RA,	FBgn0015781,	P5cr,	1	.
CG30098-RA	ATTCAGGCGGTCCATTGGGGTCACTTGTGAAATACGGACATAAAACCATATATGTTCAGTTTGGA	65	-	chr2R	12241847	12241912	12241847..12241912	CG30098-RA,	FBgn0050098,	CG30098,	1	.
CG12029-RA	GCTGCTCCAAGGTGTACACAAAAAGCTCTCATCTGAAGGCCCATCAAAGGATACACACGGGTGAG	65	+	chr3L	3649278	3649343	3649278..3649343	CG12029-RB,	FBgn0263239,	dar1,	1	.
CG13041-RA	CCTGCACCACTAAGGACGCAAATGTGATACAGTATTTACGATTTTTTGTTTCAATAAATGTTTTTCGTT	69	-	chr3L	16312068	16312137	16312068..16312137	CG13041-RA,	FBgn0036605,	CG13041,	1	.
CG14915-RA	TGTCGAGCTCTAAACTTGCCCTTCTTATTCTGGTCATTGCCTGTTTGGTCCTTATCGCATGGGCAC	66	+	chr2L	11071061	11071127	11071061..11071127	CG14915-RA,	FBgn0032335,	CG14915,	1	.
CG6155-RA	CCCCCCCCTAAACCAATTTACATGGCGTGTGTCTCTCAATTGTTTGCAATTTGTTTTCCGCTGCAAAAT	69	+	chr2R	9442839	9442908	9442839..9442908	CG6155-RA,	FBgn0014877,	Roe1,	1	.
CG17522-RA	CGGCTGCATTTCGAGACCGGTGTCCTTTTTCACGGCATCTTCAAGCAATTGCAGAGAGCTCTGTTCAAA	69	-	chr2R	14284607	14284676	14284607..14284676	CG17522-RA,	FBgn0063499,	GstE10,	1	.
CG31327-RA	CAGGGGCCATTCTACGAGCAGCTTGTCAAGTGATGCGCTTCTTTCTGATGGGCAAAAAGGATCGTAACA	69	-	chr3R	9984121	9984190	9984121..9984190	CG31327-RA,	FBgn0051327,	CG31327,	1	.
CG4074-RA	GCAATGTACTGCCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTGCCCTACGT	69	-	chr3L	20761716	20761785	20761716..20761785	CG4074-RA,	FBgn0037017,	CG4074,	1	.
CG7441-RA	CGCCCATCGTTCCCACTCAGTCTATGCGCGTAGAGAAACAACTAGGTAGCACTCGAACTCGGCACGTAT	69	+	chr3L	17844679	17844748	17844679..17844748	CG7441-RA,	FBgn0036763,	CG7441,	1	.
CG14186-RA	CTTTCCTTTAGATGCGTTTACGTGGCAGTTTAAGCTTCTACCTGAGCTGTATATAAACCGAGTGCAATA	69	-	chr3L	20091353	20091422	20091353..20091422	CG14186-RA,	FBgn0036935,	CG14186,	1	.
CG14176-RB	TGGATGGGCATGATTATGGTCTACTTTGTGACCATAGCTCTGGAGATCACTCTGTACAACGTGAGTGCA	69	-	chr3L	9620850	9620919	9620850..9620919	CG14176-RB,	FBgn0036019,	Or67b,	1	.
CG33262-RA	TGCTGGTATTGGTATTCCTGCGGATCTTGAGTATGAATCCCTGACTGTTGGCTATGTCCTTAAAGCGGA	69	+	chr3L	13129565	13129634	13129565..13129634	CG33262-RB,	FBgn0053262,	CG33262,	1	.
CG15001-RA	ACACAGTCACAGCTGCTGACCACCAGTCTGGAAATGCCCAAGACGGAGGATCTGTACAATCTGTCC	66	-	chr3L	4160445	4160511	4160445..4160511	CG33545-RB,CG33545-RC,	FBgn0259986,	nab,	1	.
CG31038-RB	CGCGTGCTGTCACTGTAGTGCCGAAATATAACACACTTCTCGAGGGTACGAGCTGCATTTCGATGTGAA	69	+	chr3R	25723629	25723698	25723629..25723698	CG31038-RB,CG31038-RD,	FBgn0051038,	CG31038,	1	.
CG10422-RA	GCGCCAAAACTCAATGCCCTCGGACTATCTGTTCGATATGCCGGTGAAGAGCACGATGCCTAAGAGCTT	69	-	chr3R	21069996	21070065	21069996..21070065	CG10422-RA,	FBgn0000158,	bam,	1	.
CG15153-RA	GGAGCGGCAGACAACGAGATAAGCTACAAGATCACGCACTTTGAGCTCTCGAAGGCGAACTCCGA	65	-	chr2L	18091223	18091491	18091223..18091265,18091468..18091491	CG15153-RA,	FBgn0032663,	CG15153,	1	.
CG15061-RA	GTGTACTCCCCTCGGGATGAGCATGATCGTGAAGATCAGCTCCCAAGCAGCTCCCTCTTTGGCTG	65	+	chrX	18187502	18187567	18187502..18187567				0	no match
CG2812-RA	CTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGCTCCGCTGTAACCGCGG	65	+	chr2R	19813837	19813902	19813837..19813902	CG2812-RA,	FBgn0034931,	CG2812,	1	.
CG4107-RA	GCGGTCACCATGTCGGAACAAGTTAAGGGCTATGGCACGCACTTGATGAACCACTTGAAGGACTACAGC	69	-	chr3L	12515230	12515299	12515230..12515299	CG4107-RA,	FBgn0020388,	Pcaf,	1	.
CG15436-RA	CGTAAAGAGCGCGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGAGTTCGCGA	69	+	chr2L	4464018	4464087	4464018..4464087	CG15436-RA,	FBgn0031610,	CG15436,	1	.
CG2046-RA	GCTTGCCAAGAAAGTGATCACTCTGACGCTTAAGCCAAAGGTCGAGTTCAAAAGCGAGGACATCCAGCT	69	-	chr3R	1619463	1619532	1619463..1619532	CG2046-RA,	FBgn0037378,	CG2046,	1	.
CG15589-RA	GTAGACGGGGTCTAAAGGTCTCGGAGCCATCTCTCGGACGGTATGGGGTCGAGATGACAGCAAAG	65	+	chr3R	2032899	2032964	2032899..2032964	CG15589-RA,	FBgn0037409,	CG15589,	1	.
CG11494-RA	CGAGCCCCCAAATTGATCGATACAGGTATTAGAGAAACGGCAGCAATCTACTGTATATATAGCGGACCG	69	+	chr3L	3153762	3153831	3153762..3153831	CG43365-RA,CG43365-RB,CG43365-RC,CG43365-RD,CG43365-RE,	FBgn0263108,	BtbVII,	1	.
CG1736-RA	GGCCACTGAACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGCCAAGAATCTCGTGGTTGAA	69	-	chr3R	26948900	26948969	26948900..26948969	CG1736-RA,	FBgn0261395,	Prosalpha3T,	1	.
CG12121-RA	GTTCTTCGTGCTGACTGGCTACAAGTTCCGTCCAGTATCCTCGCATCCATACTTCACCGTGCCGG	65	-	chrX	9123488	9123553	9123488..9123553	CG12121-RA,	FBgn0030109,	CG12121,	1	.
CG9153-RA	AGGGCGACGATTTTAAGGAAGTCTTCGATCTGACCTTTGAGATATCGCGGGATGTATTCGGGGAGGCGG	69	+	chr3L	1317209	1317278	1317209..1317278	CG9153-RB,CG9153-RA,	FBgn0035207,	CG9153,	1	.
CG15923-RA	GCAGTCTGGCCAACATCTCTCTGTTCTCACTGACGGAGCCAGGATTTGGTTACTACATCCACGGACGAT	69	-	chr3R	16439407	16439476	16439407..16439476	CG15923-RB,	FBgn0038814,	CG15923,	1	.
CG15383-RA	TCGTCCAAGTCTTGGGATGTGGATGTGGATGTGGATGTCTTGCTGTCAGTTTGTGCGCCTTCTGC	65	+	chr2L	2185115	2185180	2185115..2185180				0	no match
CG31528-RA	ACGCGCTCTGCTCATATCTCTGGGCAATGTTGATTGCGCTGTAAGACTACTGGACCACTGGAATCGGTT	69	+	chr3R	243216	243285	243216..243285	CG31528-RA,	FBgn0051528,	CG31528,	1	.
CG9014-RA	CCCCATCCTCGGACTGGTCATGATCTTCGTCGACGGTGTGAATGAGGTAATATTTGGCGAAGAGATTAT	69	-	chr2L	13722396	13722465	13722396..13722465	CG9014-RA,	FBgn0028847,	CG9014,	1	.
CG12701-RA	TGCAGTTGAGTGTCCTGTTCGGGTCAGCTTGGGGTTGTTCCGATTCAGTTTTAACGAGTTTCGCCC	66	-	chrX	19671294	19671360	19671294..19671360	CG12701-RB,CG12701-RA,	FBgn0259789,	vfl,	1	.
CG9928-RA	AGGTGGCAACTTGGACTGGAGCGATAGTGTTCACAGTTCTGATGACGATAGGACTCTGAAGCTACTGGA	69	-	chr2L	13142680	13142749	13142680..13142749	CG9928-RA,	FBgn0032472,	CG9928,	1	.
CG11727-RA	CGCGGAAGTACGGAGCTCTCCACATAACCTACAGATGGATCAGATCTAGCATATCCAAACCAACCAACA	69	-	chrX	11327270	11327339	11327270..11327339	CG11727-RD,CG11727-RA,	FBgn0262740,	CG11727,	1	.
CG3059-RC	TCACGTCCAGCAAGAAGATCAACGTCTTCACGCACAGCTATCTGGGACTGGGTCTAATGGCTGCAC	66	-	chr2L	2881842	2881908	2881842..2881908	CG3059-RD,CG3059-RB,CG3059-RC,CG3059-RA,	FBgn0024947,	NTPase,	1	.
CG17258-RA	CGGTGGCGCATGAAAATATGGGAGCTCTTGCCTGACTACAAACCGAGAGAGGACAGCTTGTGGTAG	66	-	chr2L	3032335	3032401	3032335..3032401	CG17258-RB,	FBgn0031496,	CG17258,	1	.
CG13480-RA	AATTCCGGAGATTCCACTCCCATCGTTTTTCCCATCCAAGTGTATGAACAGCCAAAGTTGAAGTCCTCT	69	-	chr3L	14553280	14553349	14553280..14553349	CG13480-RA,	FBgn0028418,	Lk,	1	.
CG5232-RA	GCCAAAATCACCAAGGTTGTGTGGAAACAGCGAAGAAAATGATATGGGAGGCCAAAAAAGCCGGTTGCC	69	+	chr3R	8252397	8252466	8252397..8252466	CG5232-RA,	FBgn0038045,	Sas,	1	.
CG4241-RA	GCCACTCGTCACCCATAAACACCACACCAAAAACGCACTGCTTTGATCTTAAGTCTCGCGATCGATGGA	69	-	chr3R	16378544	16378613	16378544..16378613	CG4241-RA,CG4241-RB,CG4241-RC,CG33488-RA,	FBgn0067783,FBgn0067782,	att-ORFA,att-ORFB,	2	.
CG30036-RA	GTACGCGGAAGCCCTAACCACATCTCTCGTCCATCTGGAAGATGTCTTCGTCACTGGCATCTGTGC	66	-	chr2R	7865446	7865512	7865446..7865512	CG30036-RA,	FBgn0050036,	CG30036,	1	.
CG32201-RA	TCGCGACCTCATAGCCATGGGAAATTCGATGTACCAGCAAAGCGACTATCAGACAGCAGCCAAATGGTA	69	+	chr3L	18603556	18603625	18603556..18603625	CG32201-RB,	FBgn0052201,	CG32201,	1	.
CG18540-RA	TTCAAGGTCGGAATTCGGGTTTTCAGGCACATTCTTCTGGAATATTGATGTGGACGATAGCGTGATGGT	69	+	chr2R	14187066	14187135	14187066..14187135	CG18540-RB,	FBgn0034326,	CG18540,	1	.
CG13441-RA	GCCAGGTGGTTTCCATGATCCAGGAGCTGCACTATCTCATCCAGGAGATTAACCGAGTTTACGCCCTCA	69	-	chr2R	16573649	16573718	16573649..16573718	CG13441-RA,	FBgn0041240,	Gr57a,	1	.
CG11771-RA	TGTCCGGTCATGTGATGAGCAACTTCCTCGACGATCCCACAGTGATTCGAAGCCTATCCGGACACT	66	+	chr3R	20759544	20759610	20759544..20759610	CG11771-RA,	FBgn0039252,	CG11771,	1	.
CG5394-RA	AGGCGCAAGAGGATATGACCAGTCACACGAAAAAGGTGACCAACTGGACGGACTTCTGTGGTTTCCTAG	69	-	chr3R	19778244	19778313	19778244..19778313	CG5394-RA,CG5394-RB,	FBgn0005674,	Aats-glupro,	1	.
CG14739-RA	CGCCATCATGAAACACTCGGAGCAACTCTTTCGCGAGCACGTTATCCTTTGCATGAAGACGTACGCCAT	69	-	chr3R	7874224	7874293	7874224..7874293	CG14739-RA,	FBgn0037987,	CG14739,	1	.
CG2986-RD	TCTGGCATAAACAATGGAATCATTTTTCGGTGGCAGTTAGAACCAGGATTAGCTCAAAGCAAAGCATAA	69	+	chr2L	2856732	2856801	2856732..2856801				0	no match
CG10620-RA	GCCCTACGACAGCATGTGCGATCTGTGTCATGGAACTAGCTATCGCTATTGTCGTCGCGATGCCT	65	-	chr3L	12524407	12524472	12524407..12524472	CG10620-RA,	FBgn0036299,	Tsf2,	1	.
CG32672-RA	TGTTTACGGCATGGCCAAAATTAACTAACTTTGCTCCGGTCGGGATGCATCGGAATGAAGCCCCC	65	-	chrX	10659453	10659518	10659453..10659518	CG32672-RA,	FBgn0052672,	Atg8a,	1	.
CG4195-RA	ATTGACAATGCGTAAATATCGTAATTAGGAGAGTCGCTAGTGTTAGTCCCCTCGAAACCATGAGTGTAT	69	+	chr3L	16582922	16582991	16582922..16582991	CG4195-RB,CG4195-RA,	FBgn0002283,	l(3)73Ah,l(3)73Ah,	1	.
CG32632-RB	GTCGGACCAGGTTATCAAGCCGGTTAATCTGGAGGCGATGTCCAAATGGGTTGGCCAAATACCCG	65	+	chrX	13479938	13480003	13479938..13480003	CG32632-RB,CG32632-RC,	FBgn0086674,	Tango13,	1	.
CG4706-RA	TGGGTCAGAACTCCGAGAAGAATGGCTATCCGATGGAAATCAAAGTGAGTCTAATTGGTTCCTGCACGA	69	+	chr3R	6964057	6964126	6964057..6964126	CG4706-RA,	FBgn0037862,	CG4706,	1	.
CG1435-RA	ACAAGCTCTTCTTCCGTTGTCTGGGACTGACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACA	69	+	chrX	7235649	7235718	7235649..7235718	CG1435-RA,CG1435-RB,	FBgn0026144,	CBP,	1	.
CG7727-RA	ATACACGAGCCACACAAAGCAAAGGTCGAAGGTCAGCCAGCTAGGGAAGAATGACGACGCTTGGC	65	+	chrX	470710	470775	470710..470775	CG7727-RA,CG7727-RB,CG7727-RC,CG7727-RD,CG7727-RE,CG7727-RF,	FBgn0000108,	Appl,	1	.
CG2975-RA	GCCTTTCTACACGCCCACAATTTCAGGGAACCGGTTTATTTTGGAAACAAGTTCCGCCAGCATGTAAAA	69	+	chr2L	2841587	2841656	2841587..2841656	CG2975-RA,	FBgn0031468,	CG2975,	1	.
CG13552-RA	CCAGCCGGGTTATAAATATAAAAATGACAGACCAACAAAAGCGAAAGGAAGGCAATTCTGGGTGCTCCT	69	+	chr2R	19353954	19354023	19353954..19354023				0	no match
CG2901-RA	GCTGCGATATGATCGGGTGAACAACTGCTTTGAACCGGATGTGATGGTCCCGATTACCATGTGCCT	66	+	chrX	3723895	3723961	3723895..3723961	CG2901-RA,	FBgn0029679,	CG2901,	1	.
CG7433-RA	CCGGCAAGGTTCTGAAGAACGGTTTGCTGAGCCTGGAGAAGGAATTCCCGCATATCTTGAACTCCACC	68	-	chr3L	19991520	19991588	19991520..19991588	CG7433-RB,CG7433-RA,CG7433-RC,	FBgn0036927,	CG7433,	1	.
CG7047-RA	TGCCACCTGATCAAAATATCCTACGACGTCTTCTTCGTGATCGAACCCAAGTCCATGGAGAAGGAGATT	69	-	chr3L	176860	176929	176860..176929	CG7047-RB,CG7047-RC,CG7047-RA,CG7047-RD,	FBgn0035103,	Vdup1,	1	.
CG13836-RA	CCGTCTGCCTGGAGGATACCTACAAGCGTACCTCAACTTATGCCTCAAACATCAATTCAACGGGCGGC	68	+	chr3R	18996018	18996086	18996018..18996086	CG13836-RA,	FBgn0039060,	CG13836,	1	.
CG14413-RA	CGCCGTTTGTGCGCTGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAATCGGA	69	-	chrX	14476574	14476643	14476574..14476643	CG14413-RA,	FBgn0030572,	mRpS25,	1	.
CG11085-RA	CCAGAACTGGAGCTCTCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC	65	+	chrX	12513680	12513745	12513680..12513745				0	no match
CG17575-RA	CCAGTGTCCACCAGTACATGACCTGCAACTTTGTCCGGACAAATGATGTCAATGCCCCGGTCTACCAG	68	-	chr2R	8733219	8733287	8733219..8733287	CG17575-RA,CG17575-RB,	FBgn0250842,	CG17575,	1	.
CR32874-RA	CTCTGATGATCTTTTACACAGACCTGTACTGAGCTCATAACCGTGCAGAAAATTGTAAACTGAAA	65	-	chr2L	9894476	9894541	9894476..9894541	CR32874-RA,	FBgn0063389,	snoRNA:Me18S-G1620,	1	.
CG12689-RA	CGCTATGCTGGTCTAAAGGACCTGACAAGACTTCGGCCTCAGTTCTCAACAGCCATTTGCCCAAGAGC	68	-	chrX	7479890	7479958	7479890..7479958	CG12689-RA,CG12689-RB,	FBgn0029952,	CG12689,	1	.
CG31748-RA	CCTCCAAATGGCCATGGTCTTGAGTGCAATGGGGAGTGTGGACTCTCAATTCTACCTGGGACTGG	65	+	chr2L	17180825	17180890	17180825..17180890	CG31748-RA,	FBgn0045485,	Gr36c,	1	.
CG4229-RA	GCAAACTTGAAAAATGAAAATCTTCTCGCTTGGTGGTGTCCTTACCCTCTCCGCTGTGGCCAGTGTGGC	69	+	chr3L	16549982	16550238	16549982..16549998,16550185..16550238	CG4229-RA,	FBgn0036639,	CG4229,	1	.
CG1113-RA	AGCAACTGCGTAAGGTCTATGGCTCAGAAAAGTCCTGTTCGAGGCAGTCTCAACGAAGCAAGCGGT	66	+	chr3R	1080970	1081036	1080970..1081036	CG1113-RA,	FBgn0037304,	CG1113,	1	.
CG5608-RA	TGTGCGAGACCACAATCAGCCAGTTTCTGAAGTCCATAAGGAACGACTCGTCATCCGTGCGTATGGAGG	69	-	chr3R	8289972	8290041	8289972..8290041	CG5608-RA,	FBgn0038058,	CG5608,	1	.
CG14855-RA	AGGCATATTTGATTTTCTTCGTCATATGTTTAGGAGGGAAGGCAGTAAATCAGAGGTGGAAATGGGTCC	69	+	chr3R	10624028	10624097	10624028..10624097	CG14855-RA,	FBgn0038260,	CG14855,	1	.
CG18558-RA	TGCTGAAACCCTACTCACCGAGCAATCCGATTTACTTTGGCTCCCCATTCAAGCTGGGATCCACTCTCT	69	-	chr2L	2843142	2843211	2843142..2843211	CG18558-RB,	FBgn0031469,	CG18558,	1	.
CG15326-RA	CCACCTTGGTCCTTAGGAGTGGCTACCAGTCGGGAATGTATCAGCTGCTAAGGCAGGATACCCAAAGG	68	-	chrX	7759682	7759750	7759682..7759750	CG15326-RA,	FBgn0029965,	Ir7b,	1	.
CG31321-RB	GTGGACATGTTCGTCAGTCTGCGAGTGATTGCCATCAAGACCATCGGTTCGAGCATTGTGGCTGG	65	+	chr3R	10139253	10139318	10139253..10139318	CG31321-RB,	FBgn0051321,	CG31321,	1	.
CG10089-RD	ACTTTCTCTACTTACTCTCCCTCTCTCGCGAGTAGAAGTCGTACTTGAAGGTCCCCATGTGGCAGCT	67	-	chr3L	13467438	13467505	13467438..13467505	CG10089-RD,CG10089-RA,	FBgn0036369,	CG10089,	1	.
CG1152-RA	GAGTTGCTCTCGAATAACTCTCGGTCCATTCAGATCTTCCCAGCTGTTTTGAACCCTCGATCGCG	65	-	chr3R	3078959	3079024	3078959..3079024	CG1152-RA,	FBgn0001112,	Gld,	1	.
CG3001-RA	ACAGTAGAGCCACGCTAACTCACAAAAGCCCTATAGCCAAACGATATGAAAAAATGAAGCTGCCACGAC	69	+	chrX	9482040	9482109	9482040..9482109	CG3001-RA,CG3001-RB,	FBgn0001186,	Hex-A,	1	.
CG14469-RA	CGGACCATCCGCCATAAAATCAAACACCAACACACAGGTCTCGACACCGACTGGCATCATTTCCCACTT	69	+	chr2R	1744638	1744707	1744638..1744707				0	no match
CG2493-RA	ACTACGTGGAGGAGGTGTACAGCAATCTCGCCATGGTCAATTACCCGTACAACAGCAGTTTCCTGGC	67	-	chr2L	20462507	20462574	20462507..20462574	CG2493-RA,	FBgn0032864,	CG2493,	1	.
CG14642-RA	GCGTTCGCAGAGCCCTTACGATGCTTCGCAATCTGTCCGTGTGTCTGATATCATTTATCGGGCTCTGGT	69	-	chr3R	68368	68437	68368..68437	CG14642-RB,CG14642-RA,	FBgn0037222,	CG14642,	1	.
CG14626-RA	GGCTCTACAAGCGAGATTCCCAGGAGGACCGGTCGAGAATCGTCAAGGAAACCTTACCCGAACCTTAGA	69	+	chrX	1082473	1082542	1082473..1082542	CG14626-RA,	FBgn0040360,	CG14626,	1	.
CG3036-RA	CGTTATGGCTGTGGCTTCATCCTACCTGGCTGATTACCTGCGCAAGAAGGGTACTTTGAGCACGACG	67	+	chr2L	4902498	4902565	4902498..4902565	CG3036-RA,	FBgn0031645,	CG3036,	1	.
CG5220-RA	GCGTCCTTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGGGCTACATTCCTCA	69	+	chr3R	12867201	12867270	12867201..12867270	CG5220-RA,	FBgn0038471,	CG5220,	1	.
CG3805-RA	CCCGTAAATATTACCTCACCGGGTCCCATCCCCATAAATCTGTGCATTGGTCGCATGCGTTTGGAGC	67	+	chr2L	4990736	4990803	4990736..4990803	CG34126-RB,	FBgn0083962,	CG34126,	1	.
CG3529-RB	CCACAACTACCGCCGTGAGCAATACGCCGCAAAGTGACCAACTGCTGATCGATCTAATCGAAAGC	65	+	chr3L	9442529	9442594	9442529..9442594	CG3529-RB,	FBgn0035995,	CG3529,	1	.
CG6531-RA	TATGCATGGAACGCATATAGACGCACGTATTGTTAACATCACCCATATCCCATATCCTAGTACTAGTAT	69	-	chrX	18518337	18518406	18518337..18518406	CG6531-RA,	FBgn0030941,	wgn,	1	.
CG14574-RA	AGTGCAGCATTCTGGGTTCTTGGTATGCGTCAGAGATTCCTAACGTTTTTGTCGATCTCAACGGCGGGA	69	-	chr3L	21574367	21574436	21574367..21574436				0	no match
CG10746-RA	CAAACGGCACTTTGTTTACCGACAAACAATAGCGCACGACGAAAAAATCAAGTAACGAAAACCTGCCCC	69	-	chr2L	20082333	20082402	20082333..20082402	CG10746-RA,CG10746-RC,	FBgn0020303,	fok,	1	.
CG12010-RA	TCTCGAAGATGACGGCTGGGTTTGAGGTTATCGGAGGCATGGAAGCACTGAAACGTACCTTGCAAGT	67	+	chr3L	3375701	3375768	3375701..3375768	CG12010-RA,CG12010-RB,	FBgn0035443,	CG12010,	1	.
CG3700-RA	GATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTGTCTGCTGTCCCATACCGCTGG	65	+	chr2R	18782127	18782192	18782127..18782192	CG3695-RB,CG3700-RA,CG3700-RB,	FBgn0034795,FBgn0034796,	MED23,CG3700,	2	.
CG13603-RA	CCCCGCCGATCGTTTCGAACGCATCCTCCGACACGGAACAGAACAAATAGTTGACGTTTGTGATCAATC	69	-	chr3R	19811175	19811244	19811175..19811244	CG13603-RA,	FBgn0039135,	CG13603,	1	.
CG7470-RA	ACCGAATCGCGTTCCAAAGTAGAGTGCACTTTCGTCATCTTTTAGAGGAGTGCATTTTGAGCGAAGGGT	69	+	chr3L	21975531	21975600	21975531..21975600	CG7470-RA,	FBgn0037146,	CG7470,	1	.
CG32279-RA	AAAGTACCAGACTCGTTCGGAACATCAGTTGCAATGGTGCAGATCAAATTCCTTTTCGTCTTCCTGGCT	69	+	chr3L	3314341	3314410	3314341..3314410				0	no match
CG14309-RA	TGGAAAGCATTTCCTCAGCCACATCAACGAGCATGAACACGAGTTTTCTCTAGGAGATGAGGGCATGCG	69	-	chr3R	14208211	14208280	14208211..14208280	CG14309-RA,	FBgn0038611,	CG14309,	1	.
CG31297-RA	CGTAAAAAAGAGATTCAGCACGCCCGTCCGTCCCCAAGCGATTTGTGAGCACTCTGTAAAAGGGCAG	67	+	chr3R	11291457	11291524	11291457..11291524				0	no match
CG14586-RA	GGCCAGCCGATTAAGTCCAACATACGTACACTGCAACAACTGGCAGATAGCAATTTGGATGTGGGCATA	69	-	chr3L	17811765	17811834	17811765..17811834	CG42643-RA,	FBgn0261402,	Ir75b,	1	.
CG5685-RA	GGGGCCTCCTTGACAACTAGTTCTAGTCACCTCACACTATCGACACAAGTCCAACTAGCAACACTTTCA	69	+	chr3R	16839529	16839598	16839529..16839598	CG5685-RA,CG5685-RC,	FBgn0013995,	Calx,	1	.
CG14930-RA	CGCATGCAACTATGAAATAATCGAAATCTTTAAAATTATAATACTTTTATTACATTGGCAACTGTCAAT	69	-	chr2L	11520396	11520465	11520396..11520465	CG14930-RA,	FBgn0032366,	CG14930,	1	.
CG3477-RA	CGGCAGAGCAGTTGACGGTGGTCACTTCGTACTTGGATCTCTCGCTGGTATATGGCAACTCCATTCAAC	69	+	chr3R	12852081	12852150	12852081..12852150	CG3477-RA,CG3477-RB,	FBgn0004577,	Pxd,	1	.
CG3020-RA	CCGGAAGCGACAGACCCACATTCACAGGGGCGAATCCAATCCCTACTTTGACCAGCATTTCAAGTTCC	68	-	chr3L	15010503	15010571	15010503..15010571	CG42333-RC,CG42333-RD,	FBgn0261090,	Sytbeta,	1	.
CG18389-RA	ACCGGAAACAGGAAATCGTCAATCGCGAATCGGAAAAAAGAAGCAGCACCAAATCGAACTGCAAAGGCA	69	+	chr3R	17837373	17837442	17837373..17837442	CG18389-RA,	FBgn0013948,	Eip93F,	1	.
CG7560-RA	TTATCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGACTGTCGAGCAGCTGGAA	69	+	chr3L	11419043	11419112	11419043..11419112	CG7560-RA,	FBgn0036157,	CG7560,	1	.
CG32061-RA	TGGATGCTGGTTAAGGCCATAATGTATTCACTACTATCTATGATCGGAGTTTGGTACTCACGACA	65	+	chr3L	10457165	10457230	10457165..10457230	CG32061-RA,	FBgn0052061,	CG32061,	1	.
CG14487-RA	GTCGCACGAAAATACCATTGGTTACGACCGAGGAAGACTTTCCCACATGGATGAAACTGCGTGTGCCCA	69	+	chr2R	13632812	13632881	13632812..13632881	CG14487-RA,	FBgn0034272,	Ir54a,	1	.
CG10827-RA	AGGAGAAGTCCCTGTCCTTCGAAAACTTCCCCTTCACGGGCCTCTCGAAGACCTATTCCGTGGATAAGA	69	-	chr3R	16832299	16832368	16832299..16832368	CG10827-RA,	FBgn0038845,	CG10827,	1	.
CG14792-RA	AGGTCCGTAACTCTTTCCACGTTAACATGTCGGGAGGCTTAGATATTCTGTCCCTCAAGGAGGACGACA	69	-	chrX	1376881	1376950	1376881..1376950	CG14792-RA,CG14792-RD,	FBgn0003517,	sta,	1	.
CG14321-RA	GCCAAGATCAACTGCATCCGACAGTGCATTTCGCCATCGTGCTACCAGGACATCTATGCCTTCAACGA	68	+	chr3R	13559672	13559740	13559672..13559740	CG14321-RA,	FBgn0038540,	CG14321,	1	.
CG14919-RA	GCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGTGCTACTTTAATCCCATCTCCTGCTTTAGGAAGTA	69	-	chr2L	11076735	11076804	11076735..11076804	CG14919-RA,CG14919-RB,	FBgn0032336,	Ast-C,	1	.
CG33329-RB	ATCGGCCGTCTATCACAAGGAGGTTCGAGCTCTGGCCTTTAAGTGCAGAGGATCCCTGATCTCGTC	66	-	chr3R	10048680	10048746	10048680..10048746	CG33329-RC,	FBgn0053329,	Sp212,	1	.
CG32250-RA	CCCTGTACCGAGGTCTTGGTCCTGTACTGCAGAGCCTTTGCATTTCGAACTTTGTCTACTTCTACACAT	69	+	chr3L	4320209	4320278	4320209..4320278	CG32250-RA,CG32250-RB,	FBgn0052250,	CG32250,	1	.
CG32193-RA	GCAGTTTGAAACATTCGCGTTTCGCTCAGCCTCTGACGTCGTGCAAAAATTGCAGCCGAACGAAAC	66	+	chr3L	17957926	17957992	17957926..17957992				0	no match
CG17853-RA	TGCAACTGTGCCTCAACACTTGGTGCTTCGCTCTGAAGTTCTTCACTCTGATCGTCTATACGCACCGCT	69	-	chr2R	3809729	3809798	3809729..3809798	CG17853-RA,	FBgn0026393,	Or43b,	1	.
CG14767-RB	CCCATCCTCTTCTTGCCCAGATGATCTGGTTTCTGGTCCCTCATTTCGCAGCTATCATTCCCAGGCAC	68	-	chr2R	4606065	4606133	4606065..4606133	CG14767-RA,CG14767-RC,CG14767-RB,	FBgn0040777,	CG14767,	1	.
CG33288-RB	CCATCTGGAGAGGACTTCTCCCGAACTGGTCTCTAGTCTGGACACAGTGGAGGAAGTACCTACGGCC	67	+	chr3L	21424768	21424835	21424768..21424835	CG33288-RC,	FBgn0053288,	CG33288,	1	.
CG17533-RA	GGAAGAATCCCCAGCATACGGTGCCCACTTTAGAGGACGATGGCCATTTCATCTGGGACTCACACG	66	+	chr2R	14295506	14295572	14295506..14295572	CG17533-RA,	FBgn0063492,	GstE8,	1	.
CG3635-RA	CGCTGTTGGGGATGTGAAGTATCTGGCCTCACTCCTACCATGCGCCCAACTATACCGTATTCCATTCAG	69	+	chr2L	22183745	22183814	22183745..22183814	CG3635-RB,CG3635-RC,	FBgn0032981,	CG3635,	1	.
CG31457-RB	ACTGGTTGCTTGGAAAGATTGCTAGATTGTCCATCATTCCGAATCGTGCCTAATCAGGTGTCCGG	65	-	chr3R	18953534	18953599	18953534..18953599	CG4637-RA,CG31457-RB,	FBgn0004644,FBgn0051457,	hh,CG31457,	2	.
CG30050-RA	GCAACAGTTGAGTGTTTTCAGTGGTTCACTTCGAGTGTCCATACCCAATGCCAAGAAGGTCATAACCCA	69	+	chr2R	8296730	8296799	8296730..8296799	CG30050-RB,	FBgn0050050,	CG30050,	1	.
CG14967-RA	TGGCATAGCTGATCTTGTCCTTAGTGCTTTTCTGTACACCAAGAAGTCCAAGAGCGACGATTCGGTGGA	69	-	chr3L	3212275	3212344	3212275..3212344	CG14967-RB,	FBgn0035420,	CG14967,	1	.
CG6961-RA	GCAAACTAGACTAGTTTAAGTGAATTCTGCCATGTCTGTCCACTTTAGAATTTTGTGTTTAGTGAGTAA	69	-	chrX	18680301	18680370	18680301..18680370	CG6961-RA,	FBgn0030959,	CG6961,	1	.
CG10737-RA	AGCTGAGATCCTGTTCGAGGTGTATGACCATCCGGTGATTGCCTCAGATCCGCCCAAGTTTCTGG	65	+	chr2R	15061226	15061291	15061226..15061291	CG10737-RD,CG10737-RC,CG10737-RA,CG10737-RE,CG10737-RU,CG10737-RT,CG10737-RS,CG10737-RR,CG10737-RQ,CG10737-RP,CG10737-RO,CG10737-RN,	FBgn0034420,	CG10737,	1	.
CG4717-RA	TGCGGCTAGTGCCATGAGGGGAATATTCGTGTGTGTCTAAGTACACGGCGAAAAAACCAAGTGGGAGGA	69	-	chr3L	20685906	20685975	20685906..20685975	CG4717-RA,	FBgn0001320,	kni,	1	.
CG10899-RB	GCCTGTGCGATCCTTTATCCGTGATCAACAATGGGCTAACAGTTCTCATGCGGATACCCAAGACCGTCG	69	-	chr3R	20682915	20682984	20682915..20682984	CG10899-RA,CG10899-RC,	FBgn0039235,	CG10899,	1	.
CG10799-RA	GCAAGCGAGCTACCAAGGACACTAGTAACAGCACGGAAGATGATGAGCTCACGGATGGTAGCAATGAGA	69	+	chr2R	9145618	9145687	9145618..9145687	CG10799-RA,	FBgn0033821,	CG10799,	1	.
CG7329-RA	CAAGGGCCACGTGAAACTCAACCCCAATACGGACAAGTCCTACTGGAGCTTCTCTTGGCACGAGATTG	68	-	chr2L	10630494	10630562	10630494..10630562	CG7329-RA,	FBgn0032271,	CG7329,	1	.
CG14687-RA	CGAGCGAGTTCGTCCGGAACAGAGAGCTACAACCGATGAAAGCCGTATTTGTTGGATAGAAACGCGGAC	69	+	chr3R	6618648	6618717	6618648..6618717	CG14687-RA,	FBgn0037835,	CG14687,	1	.
CG1495-RA	CGACTGGAGCGTGGACTTCTAACGTTCTCTCTTCGCAGCAATCTGTACAAAGTCATGCACAAGAAATGA	69	+	chr4	473718	473787	473718..473787	CG1495-RB,CG1495-RH,CG1495-RD,CG1495-RG,CG1495-RE,CG1495-RA,CG1495-RC,	FBgn0016126,	CaMKI,	1	.
CG11621-RB	AGTGCCCTCGACTGTCGGGGTTAGCTCTAGTAGCCACACTGGAAACAATGGTCATTCCTCGGTCC	65	-	chr3L	11780321	11780386	11780321..11780386	CG11621-RC,CG11621-RA,CG11621-RB,CG11621-RD,	FBgn0015278,	Pi3K68D,	1	.
CG13499-RC	TCGTCTGCAGAAGTCAGCAGTAGCGGTTCGTAGTGCTCCGTAATTTCAATGTGTACAGAGTGTTGTGTT	69	-	chr2R	17926864	17926933	17926864..17926933				0	no match
CG30274-RA	GGTCACCCGCTGTTTGGTTGAAGTCTCCAGGAATTTGGATCAGTTGGAGCTACCCCTGAACCTCACC	67	+	chr2R	18713515	18713582	18713515..18713582	CG30274-RA,	FBgn0050274,	CG30274,	1	.
CG4153-RA	TGCAATTGCAGTTTTTTTAGTTAAAACAAAATTAGTTTCCAGTCAACTAGTATTCAAACAGCCCAGACA	69	-	chr3L	12519705	12519774	12519705..12519774	CG4153-RA,	FBgn0004926,	eIF-2beta,	1	.
CG31469-RA	GGTAGTGAAACGGAATCTGCAGGACTGGTATGTGGACAGTGCTGGCCTCAGGAGTTGGAACGTTGG	66	-	chr3R	9535466	9535532	9535466..9535532	CG31469-RA,	FBgn0051469,	CG31469,	1	.
CG7527-RA	GGCCGAGTATACGGGAATCAAGACCTTTGAGGTGCAGTCCGATTTCCAGAGAAGCTGCTTGGACGACAT	69	-	chr2L	17797350	17797419	17797350..17797419	CG42829-RC,	FBgn0262018,	CadN2,	1	.
CG1744-RA	GTATGGCTGTTTGGACTCGTTGCCTCACTTGCGATCGCTTAAGCTCACTGCCTATTCCCACCTGG	65	-	chr3R	27031322	27031387	27031322..27031387	CG1744-RA,	FBgn0000313,	chp,	1	.
CG12000-RA	CCGCCCGCCTAAAGTCTGTTCACACTGCGCTGACTCTTGATTTTATTTGTGCCCGTCATTCTCCGG	66	-	chr3R	1183850	1183916	1183850..1183916	CG12000-RA,	FBgn0250746,	Prosbeta7,	1	.
CG33462-RA	CGCCAACCCAAAGAGACGTGCTCCGAAATCTATGGCTGGAATATGACGTTCGAACAGATCTGCGCCG	67	+	chr2R	11585086	11585153	11585086..11585153	CG33462-RA,	FBgn0053462,	CG33462,	1	.
CG31303-RA	ACAGCGCAATCATCTCAATAACAATAATAGTAAGCAAAATAGCTGTGATAAAACTGGCAACGATGA	66	+	chr3R	11026568	11026634	11026568..11026634	CG42542-RE,CG42542-RD,CG42542-RG,	FBgn0260659,	CG42542,	1	.
CG17223-RA	TAACCCGTGTGGCTCAGAAGATATGTGGCACCAAAGACATTGCTCTGATGCGAGAGGACCCCAAG	65	-	chr2L	3022034	3022099	3022034..3022099	CG17223-RA,	FBgn0031491,	alpha4GT1,	1	.
CG10915-RA	AATAACCGATATTGGGCGTAGCGATAAGCGAAATACTCAAGCGGCGTAGTCCCTCGGTGACCGCG	65	+	chr2R	14051053	14051118	14051053..14051118	CG10915-RA,	FBgn0034308,	CG10915,	1	.
CG31630-RA	TTCGAGCATGGCAACCAGCTGAATAGCACCTTTTCCTTGGACGTCGAAACCGGCAGTTCGTCAAC	65	+	chr2L	7046541	7046606	7046541..7046606	CG43227-RD,CG43227-RF,	FBgn0262872,	milt,	1	.
CG14535-RA	ACCGTCACACAGTCCAAGTCAAGGGTCACTCCCCAGTTTGAATGGCATCATGGAGATAGCAGGAATGGA	69	-	chr2L	7847397	7847466	7847397..7847466	CG14535-RA,	FBgn0031955,	CG14535,	1	.
CG6480-RA	ACGCAAGAAGGAAAAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGATGCCGT	69	-	chr3L	20289808	20289877	20289808..20289877	CG6480-RA,	FBgn0036964,	CG6480,	1	.
CG15889-RA	CCAGTGCACAGTACTCCACTCAGTGGGATGTGCCAAGCTCAGGAGATCAATTCCAAGGCCACCATAAC	68	-	chr3R	9088914	9088982	9088914..9088982	CG15889-RA,	FBgn0038128,	Ravus,	1	.
CG17250-RA	TTTGCGTTGATTGCTACCCAGTCAATTTCGTTTTGGTCCTGCGTGCCCACATGTCGATCTTCGCG	65	-	chr2R	1679790	1679855	1679790..1679855	CG17250-RA,	FBgn0033041,	Or42a,	1	.
CG4821-RC	TCTCAAGACTTACGGGGAAATGTTCAAAGCCAGCTGTCTTCACTTAGATCGTGTCCACCCAATGTCCAG	69	+	chr3L	9069645	9069714	9069645..9069714	CG4821-RA,CG4821-RC,CG4821-RE,	FBgn0023479,	Tequila,	1	.
CG13229-RA	TCGGATTCGTGCTGTACGGTCTGATGTCGAAACAGTTCCGGACCACCTTCCGATCGCTGTTCATGAAG	68	-	chr2R	7027594	7027662	7027594..7027662	CG13229-RA,	FBgn0033579,	CG13229,	1	.
CG32299-RA	ACTGGTGCATTCGCAATCCTTTGAAAAGGCCTACAGTACTGCAGCACCATTTCTTTTCGCCAGTTTGGG	69	-	chr3L	2389985	2390054	2389985..2390054	CG32298-RB,CG32299-RA,CG32299-RB,	FBgn0052298,FBgn0052299,	CG32298,CG32299,	2	.
CG4572-RB	GCTACTCCGGCTATTTGACCGTGGACCCTGGCTTCAAATCCAACATGTTCTTCTGGTACTTCCCCGC	67	-	chr3R	15689569	15689636	15689569..15689636	CG4572-RA,CG4572-RB,CG4572-RD,	FBgn0038738,	CG4572,	1	.
CG5300-RA	AGTCTTTGATCAGCAACGCCACATACGACATCCCGCAAGACGACAAGAATTCCGAGTTCCATCAAGT	67	+	chr2L	10418072	10418139	10418072..10418139	CG5300-RA,CG5300-RB,CG5300-RC,CG5300-RD,	FBgn0032243,	Klp31E,	1	.
CG6464-RA	ACGGATGCCAATGTATCCCACTCTGTTCGTAAGCATTAAGCATAGTCTCATAATTTATTACGCAAGCCC	69	-	chr2L	11434411	11434480	11434411..11434480	CG6464-RA,	FBgn0261648,	salm,	1	.
CG5333-RA	GGCGCTTTGTCCATGGACCACATTCGTGATTTGTATCAGGAGTACAAGCTGAGAGACCAGAATCCGGGT	69	+	chr3R	8283402	8283471	8283402..8283471	CG5333-RA,	FBgn0038055,	trus,	1	.
CG11305-RA	GAGTTTTCCACGGAAGTTGGCGCGAACCCAGGCAGGATGGTATGGCAAGGGCTATAAGAAAGGTC	65	+	chr3R	24884322	24884387	24884322..24884387	CG11305-RA,	FBgn0039631,	Sirt7,	1	.
CG7893-RA	CTGCCAAAGCACAGACCACAAAATGGAGATCTACACGTTTGACGCCCCGACAACGTGCCGTCACT	65	+	chrX	19164675	19164740	19164675..19164740	CG7893-RA,CG7893-RB,CG7893-RC,	FBgn0040068,	vav,	1	.
CG17907-RA	AGTCCTTGTTGCCTGAAGATAGTTGGCCAAATTGCATTGGTTTCATGCTTAGGTTGAGGGTTCGTTTGA	69	-	chr3R	9054669	9054738	9054669..9054738	CG17907-RA,CG17907-RB,	FBgn0000024,	Ace,	1	.
CG31607-RA	CTCCTTCTGCCTTCAGCTTCAACAACACCCGGGAGTTCATCGCTGGCTTGAATAGCACCAAGGAG	65	+	chr2L	8153837	8153902	8153837..8153902	CG43394-RA,CG31900-RA,	FBgn0263256,	CG43394,	1	.
CG10868-RA	ATTGTTAGACGACTCCCCCAAAAACGAACACCCTCGAATCGAAACAGAAGAGAGACCCCCATTCATACT	69	-	chr3R	19091279	19091348	19091279..19091348	CG10868-RA,CG10868-RC,CG10868-RB,	FBgn0004882,	orb,	1	.
CG10781-RA	CAATCCCAATGCTGAACCCAATGACAACCATAGCACTTAACTTTTGAATAGTTTATAATGAAATAGCAA	69	+	chrX	3136837	3136906	3136837..3136906	CG10781-RA,	FBgn0002933,	ng1,	1	.
CG6723-RA	GCGCTATGTGGCTACAATGGTCTGCTGATATACGCCACCTACCAGAACTGTGATCCCCTGACCACCAA	68	-	chr3R	7243126	7243194	7243126..7243194	CG6723-RA,	FBgn0037895,	CG6723,	1	.
CG1830-RB	AGAGGATCCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAACGTATAACCGTCAAGGA	69	+	chrX	11592530	11592599	11592530..11592599	CG1830-RB,CG1830-RD,CG1830-RE,	FBgn0011754,	PhKgamma,	1	.
CG6974-RA	TCGCGATGAGTACGTGCAAATCGACTACGACAATATCCCGAGGAAATACTGGTCGCAGTTCATGGCCAT	69	-	chr3R	10904450	10904519	10904450..10904519	CG6974-RA,	FBgn0038285,	CG6974,	1	.
CG11110-RA	GCTCTCCAACCAGTTCATCCATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGTACGCTCTGCCAC	66	+	chr2R	16529321	16529387	16529321..16529387	CG11110-RA,	FBgn0034535,	CG11110,	1	.
CG32343-RA	GTTTAGCGTAAGTTCGATAAGGTATATTTAGGATATTCAGCCGATAAGTGCATTTGTAAAGCACCCAGT	69	-	chr3L	325151	325220	325151..325220	CG32343-RB,CG32343-RC,	FBgn0052343,	Atac3,	1	.
CG17295-RA	GCTTAAAATGCCTCACAAACGTAGGAACCGAGTACATGCGAACCAAAGGAATTTCACAGCGCGACGC	67	+	chr2L	8382948	8383015	8382948..8383015	CG17295-RA,CG17295-RB,	FBgn0032034,	Rcd4,	1	.
CG33179-RA	GTTGAGTTACAAAACTCGACGGACGTGGTCGTTGTCCTGCGCTCAGTTAGCCTTCAGTCAACTGG	65	.	.	.	.	.	CG33179-RB,CG33179-RC,	FBgn0053179,	beat-IIIb,	1	.
CG5726-RA	AGACCACTCAGTACATGAACTATTTGTCGGCCCAGAAATGAGTTTATACACTTTACGAAGTCATCCACA	69	-	chr2R	14063556	14063625	14063556..14063625	CG5726-RA,	FBgn0034313,	CG5726,	1	.
CG11666-RA	ACATTGGGCGAGAGGACATCTTGGAACGTAAATTGGAAATGGAGAGTGAGCGAATGGTCCAGCCC	65	+	chrX	20855931	20855996	20855931..20855996	CG11666-RA,	FBgn0040648,	CG11666,	1	.
CG4272-RA	GGATTGGATTAGCAGTGGCAGTAATCAAAATACACATCGTAGGCGTCGCTCATCGACTTCAGGAGGCCT	69	+	chr2L	2369448	2369517	2369448..2369517	CG4272-RB,CG4272-RA,	FBgn0261647,	Axud1,	1	.
CG31105-RA	GCCCCTTCAACTGGTGGAAAATCTCGATGGCGTTGTCTACTGCACCTTGGGACACGTTTCCTGTCTC	67	-	chr3R	20683935	20684002	20683935..20684002	CG31105-RB,	FBgn0051105,	CG31105,	1	.
CG17010-RA	CCTTTCAGGATGCGAAGGTGCTTCTCTGCCAACTGGAAACGGATATGAATGCCACCATGTGTGCGTTG	68	+	chr2L	12356980	12357048	12356980..12357048	CG17010-RA,	FBgn0032424,	CG17010,	1	.
CG4749-RA	ACCAGAAATGTGTGATTAAATGAAAGTTGTTGGCTGATTAACAAGACTATATAACTGTTGCCCCAATAA	69	+	chr2L	1149361	1149430	1149361..1149430	CG4749-RA,	FBgn0031308,	CG4749,	1	.
CG2772-RA	ACTGCTTCACGAGGTGCCCGATTCCACATGGGGTCACTTGGACTTTATCTTCGCCACGGAGGTCAAG	67	+	chr2L	3447409	3447476	3447409..3447476	CG2772-RA,	FBgn0031533,	CG2772,	1	.
CG7039-RA	TACACATTGATGCACGGCTTCTACAAATACATGACTCAGAAGGACGACTACTGCGTGGTAATCCTGGGC	69	+	chrX	9001180	9001249	9001180..9001249	CG7039-RA,	FBgn0030088,	CG7039,	1	.
CG3121-RA	AGTGACCCCTCGACAGATTGTCGTTTCGCGGCAGATCAAGAAGTTCCTAACAGGCGATCTGGAGG	65	+	chr2R	19906299	19906364	19906299..19906364	CG3121-RA,	FBgn0034957,	CG3121,	1	.
CG3302-RA	TATCGCAGCTCCAACGTTCACTGATTGCCAGAAACTGTGTCCCCGGTTCGGACTTCAATGCCAAC	65	+	chr3R	10141086	10141151	10141086..10141151	CG3302-RA,	FBgn0013767,	Crz,	1	.
CG12321-RA	GGACAAGCGTACCACTCTGGACGTAGCAGAGCACACAGTAATCATACCGAGCATTTGCGTGGGAAACG	68	-	chr3R	14014245	14014313	14014245..14014313	CG12321-RA,	FBgn0038577,	CG12321,	1	.
CG33085-RA	AGTGCTCGAGGTTACCGATGGTGTCCTACAGACGATTCAGGTCAAGCAGGAATCAATGGAGGCGG	65	-	chr2L	8940286	8940351	8940286..8940351	CG9510-RB,CG9510-RC,CG9515-RA,	FBgn0032076,FBgn0032077,	CG9510,CG9515,	2	.
CG3208-RB	CCAGCAAAGCCCATACATGACCTTAAATGGCCGGAAACTTAGGGCTCTGTCCAATGAGCTGGGCA	65	-	chrX	5512012	5512077	5512012..5512077	CG3208-RB,CG3208-RA,	FBgn0029778,	RhoGAP5A,	1	.
CG6927-RA	GCTTCACCGTTCACCTGACGCGAGTGGTTGGCTTTTACCTGATGGACTACTTTCTACCCTCCATGCTGA	69	+	chrX	4801819	4801888	4801819..4801888	CG6927-RA,	FBgn0029733,	CG6927,	1	.
CG3528-RA	TCCAGGACACTCGCTATTTGGGCAACAAAGAGATCCAGAGGAACCTGATCCAGAATGCCTGCGGTAAGA	69	-	chr2L	2517832	2517901	2517832..2517901	CG3528-RA,	FBgn0031430,	CG3528,	1	.
CG18473-RA	TCTCCACTGGTCTTCGTAGAGATCGGTCCGCTAAAAGTACCTTCTAAAAATTCCTTTTAAAACGTGAGA	69	+	chr3R	5189034	5189103	5189034..5189103	CG18473-RA,	FBgn0037683,	CG18473,	1	.
CG1070-RA	GCAGCTGCACATGGAGGTCCAGGATCACTCGATCTACACTCCCGATTCAATGAACTCGCAATACGCC	67	-	chr3R	2924571	2924638	2924571..2924638	CG1070-RA,CG1070-RD,CG1070-RB,CG1070-RC,CG1070-RE,CG1070-RF,CG1070-RG,CG1070-RH,CG1070-RI,	FBgn0261238,	Alh,	1	.
CG11246-RA	TGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTGGACATCAACTCGTGGCTATACCCCATGGAGC	67	+	chr3L	21722379	21722446	21722379..21722446	CG11246-RA,	FBgn0037121,	Rpb8,	1	.
CG7616-RA	GCGTGCGGACATCATCTTGCTGGATCATGGACTTTACGAAGAACTGCCTCAAAATGTGCGAGGTCCACT	69	+	chr3L	11164489	11164558	11164489..11164558	CG7616-RA,	FBgn0036142,	CG7616,	1	.
CG14629-RA	ACAAGCTGCTGGAGTTCATATGCTACAAGAACGGAGACCAGATTGCGCTCTTTATCGCCGAAGAGGGC	68	+	chrX	946071	946139	946071..946139	CG14629-RA,	FBgn0040398,	CG14629,	1	.
CG5595-RA	CTATGGAAATGTATTACTCGTGGAAGAAAACCTAAGCTGTACGAAGCGTTTTAGTATTAGGCCGTTTAT	69	-	chr3R	23506238	23506307	23506238..23506307	CG5595-RA,	FBgn0003330,	Sce,	1	.
CG15049-RA	TGGGTCATCGACGGTCCCAACACGCATGAGAAGGTGATCATCCTCTCAGATCATCCATATGCCACTCGA	69	-	chrX	18354103	18354172	18354103..18354172				0	no match
CG30015-RB	TAGAGTCTGTCGAGATTGCAGACCCATATGAATGTAAACGTGTAGAAATTTAATCATATTCACACCCAA	69	-	chr2R	6726703	6726772	6726703..6726772	CG30015-RA,CG30015-RB,CG30015-RC,CG30015-RD,CG30015-RE,	FBgn0050015,	CG30015,	1	.
CG7603-RA	ACGACCAGACTGCTATTGTTTGGATACACCCAAAGACCGCAATAGACTGTCACTCTCTCTTCCCCAAAA	69	+	chr3L	17459143	17459212	17459143..17459212	CG7603-RA,	FBgn0036726,	CG7603,	1	.
CG5824-RA	AACAGCTGCAGCCTACTGACTTGGTCACCCAGACGATCACTCCAGATTTCAAGGTTCGAGCACTGGAC	68	-	chr3R	13363484	13363552	13363484..13363552	CG5824-RA,	FBgn0010926,	l(3)07882,	1	.
CR31383-RA	CGGTCTAAGGCGCTGGTTTTAGGCACCAGTCCGAAAGGGCGTGGGTTCGAATCCCACCGCTGTCA	65	.	.	.	.	.	CR31383-RA,CR31023-RA,	FBgn0051383,FBgn0051023,	tRNA:CR31383,tRNA:CR31023,	2	.
CR30304-RA	GGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCAGGATCG	65	.	.	.	.	.	CR31584-RA,CR30316-RA,CR30514-RA,CR31581-RA,CR31566-RA,CR30512-RA,CR31582-RA,CR30304-RA,CR31585-RA,CR30314-RA,	FBgn0011963,FBgn0050316,FBgn0011955,FBgn0011959,FBgn0011960,FBgn0011957,FBgn0011961,FBgn0011958,FBgn0011962,FBgn0011956,	tRNA:R2:84Fe,tRNA:CR30316,tRNA:R2:42Aa,tRNA:R2:84Fa,tRNA:R2:84Fb,tRNA:R2:42Ac,tRNA:R2:84Fc,tRNA:R2:42Ad,tRNA:R2:84Fd,tRNA:R2:42Ab,	10	.
CG10889-RA	AACTTATAATATTTAAACACTAATACTTCATTCCCTGTTTATCTAATGTTATTTACGCCTCAGGC	65	-	chr3R	15859632	15859697	15859632..15859697	CG10889-RA,	FBgn0038769,	CG10889,	1	.
CG17385-RA	CTTTGATACCTTCGCTGACTATGAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCC	65	-	chr2R	10297825	10297890	10297825..10297890	CG17385-RA,	FBgn0033934,	CG17385,	1	.
CG3268-RA	TCTGGGCTTTGTCCAACGCCTTTGCCTGACCCTCATACTGTTCATAATATTCGCCGTTGCAGAGCG	66	+	chr2R	2632488	2632554	2632488..2632554	CG3268-RA,	FBgn0028579,	phtf,	1	.
CG4139-RB	GTGGGTTTATCGCTCGTTCTTGTATTATTAGTCTAATCAATCAACTAAGAGAAAATATTATACGAAAAC	69	+	chrX	11686170	11686239	11686170..11686239	CG4139-RB,	FBgn0030334,	Karl,	1	.
CG10837-RD	AACCCAAGTCTCAAAAAAAATACGAAATTTAGATGGCGATGATAGCGATGATGGAAGTGGTACATTGCC	69	+	chr2RHet	2902172	2902241	2902172..2902241	CG10837-RD,CG10837-RE,CG10837-RB,CG10837-RA,	FBgn0020660,	eIF-4B,	1	.
CG6371-RA	CCACATATATGCATAGTGAATGACTACTCTACTAGTTACTAGCGCTATAACCCTGATTTGAGAGGAACT	69	+	chr3R	8354669	8354738	8354669..8354738	CG6371-RA,	FBgn0028374,	hug,	1	.
CG2931-RA	GCAGGCCTTCAATTCCATGACTTGAATCTGAGTGTGCATATCGTGTCCTTTAGGCTAGTTTCGGTCACT	69	-	chr3R	1393290	1393359	1393290..1393359	CG2931-RA,	FBgn0037342,	CG2931,	1	.
CG13567-RA	ACCACCTCCGGACCTTTGCCCACTGAGTTTATTCACCTATACATCAGCAATTGCATCTCGACTTGCGAA	69	-	chr2R	19924590	19924659	19924590..19924659	CG13567-RB,CG13567-RA,	FBgn0034963,	CG13567,	1	.
CG4789-RA	AGTGCCAAAATGGAAGACAGCGTCTTGCCCCTCCTGGATACCCAAGACCTCAAGTGACTAATGCACTCA	69	+	chrX	16695889	16695958	16695889..16695958	CG4789-RA,	FBgn0030792,	CG4789,	1	.
CG6418-RB	AGCAGGGCAAAGGCAAGAGACCAACAAATACCCACACAGGATTGGGCTATCGGGAGAAAGGAAATGGAG	69	-	chr3L	10869998	10870067	10869998..10870067	CG6418-RB,	FBgn0036104,	CG6418,	1	.
CG17976-RA	ACGTCTCATGATGACGATCTCCTGCCTCTGCTCTGCAATCTTTTTGGTCCTACTTGTCGTTGGCCTGGA	69	+	chr2R	3978146	3978215	3978146..3978215	CG17976-RA,	FBgn0028561,	sut3,	1	.
CG1842-RA	CCTGGTCTTTGAGGCTAATTTGGCCACTTCGGAGGATCTGAGTCACTGGATTCTGCAGGGCGTCTG	66	+	chr3R	24344952	24345018	24344952..24345018	CG1842-RB,CG1842-RC,	FBgn0013813,	Dhc98D,	1	.
CG32210-RA	TGGCGGACGACATAGAGCTGAATGAGAAACAAAGTGAGAGTCTAGACGCCAGCACAACGATTTGCAAGT	69	-	chr3L	19540632	19540701	19540632..19540701	CG32210-RA,	FBgn0262517,	l(3)76BDr,	1	.
CG32825-RA	GCCTCTTCAAGTCACTGGAGAGATCCCTTTCGATGACCTGCTTTCTGCAGTTCTTCAGCACGGCG	65	.	.	.	.	.	CG32825-RA,CG18859-RB,	FBgn0062565,FBgn0041626,	Or19b,Or19a,	2	.
CG14886-RA	TGCATAATCCTGGAGTGAACCCAAAGACCTTTATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTC	69	+	chr3R	12305308	12305377	12305308..12305377	CG14886-RA,	FBgn0038436,	Gyc-89Db,	1	.
CG2111-RA	CGGGATATGGTCGAGTCGATGTACAAGCGCTCGAATTTTGCCGCTGAAAAGGAATCACTGCTGACCGC	68	+	chrX	10554142	10554210	10554142..10554210	CG2111-RA,	FBgn0030223,	CG2111,	1	.
CG3454-RA	TTTGACACCTCAGTTCATTGTATATATGTATGTGTGATTGGGAAAGAGGGGTAAATCATCGAACGCTGC	69	+	chr2R	6133291	6133360	6133291..6133360	CG3454-RA,	FBgn0005619,	Hdc,	1	.
CG3658-RA	CCGCCGCTTTGATGGTTTTTGAGTTGGCCTGGAAGCTCTCAAAAGACAACATGGACCTGCTCTGG	65	-	chrX	923658	923723	923658..923723	CG3658-RA,	FBgn0026143,	CDC45L,	1	.
CG7010-RB	GGAACGGATCCGAAGAGACCCACAAAAAGCTTAGCTAATCGGAGCACTCCAACCACACATCGTAGCGCA	69	+	chrX	4598984	4599053	4598984..4599053	CG7010-RC,CG7010-RA,CG7010-RD,CG7010-RB,	FBgn0028325,	l(1)G0334,l(1)G0334,l(1)G0334,l(1)G0334,	1	.
CG2010-RA	TGAGGTTCAGAGCTGAAAGCCAAGAGAGGATTGGTAGCTTGCACTTACCCGGTTGCAGAGCTCTGGAT	68	+	chr3R	25324425	25324493	25324425..25324493	CG2010-RB,CG2010-RA,	FBgn0039667,	CG2010,	1	.
CG11071-RA	TGTGCGGCATGCAGTTTCGCTACCTGAAGAGCTTCAAGAAGCATCGCTTGAACCATGCCCTCGAG	65	-	chrX	13749672	13749737	13749672..13749737	CG11071-RA,	FBgn0030532,	CG11071,	1	.
CG31039-RA	CCCCATTCGCTGGTCCATCCACGCGATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTAC	65	-	chr3R	25751771	25751836	25751771..25751836	CG31039-RA,	FBgn0003358,	Jon99Ci,	1	.
CG6841-RA	GCGGTGGAAGTGTTCCCAGATTTCCCCAAACTGTGGATGATGAAGGGTCAGATTGAGGAGCAGCAGAG	68	+	chr3L	18900811	18900879	18900811..18900879	CG6841-RA,	FBgn0036828,	CG6841,	1	.
CG13726-RA	GCGCTGGACCGTTTTCCTGGACAGGTTGATGATTTTTCTCGGATTCCTGGTCTTCTGCGAGCACAACG	68	-	chr3L	17322082	17322150	17322082..17322150	CG13726-RA,	FBgn0036709,	Or74a,	1	.
CG13385-RA	GGGGGAGCAGAATCAAACAACAGGCTTGAGTCCACATTCAGAAGCAGTAGCAGAAAGTCCCGACCACC	68	+	chr2L	8397431	8397499	8397431..8397499	CG13385-RA,	FBgn0032039,	CG13385,	1	.
CG40396-RA	CGGATGCATATTTTTTTTGTCCTAACCATTAAAAAAAATTGTAGAATCGAGTGGAAATATTTCTGCC	67	.	.	.	.	.				0	no match
CG4299-RA	AGCGCAACTCCGAATACAAAACCTTCTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGA	69	+	chr3R	11090437	11090506	11090437..11090506	CG4299-RA,	FBgn0014879,	Set,	1	.
CG17766-RA	GGCTCCGAGACGCGATTCAATGTCTAAGGTGAAGGAGCAATGATAATGGACTAGTGAATCTTGCGGGAT	69	+	chrX	1809340	1809409	1809340..1809409	CG17766-RA,	FBgn0023510,	Rbcn-3B,	1	.
CG11192-RA	GAGGAGAGTGCAGTCAGCGGTGAAGTTGGAGTGTCTCCGCAACTTCGTTTCGTGGACGTGGATCT	65	-	chr2R	16242022	16242087	16242022..16242087	CG11192-RB,	FBgn0034507,	CG11192,	1	.
CG32586-RA	TGGAGCCTACGGATTCGATTCAATGAGATCGTATCGTATCTATTTTGCCTACGCTCTTGGCCAAAT	66	+	chrX	15516359	15516425	15516359..15516425				0	no match
CG1782-RA	GCCCCGATCCCCTGGTCTTTGATGTCAACGATCCCATGCACCTCGACTTTATCTACGCAGCCGCC	65	-	chr2R	5577193	5577258	5577193..5577258	CG1782-RA,	FBgn0023143,	Uba1,	1	.
CG17664-RA	AGCTCGCCTAAATGGATTTACTACACATAGGACAAGTTATCGTTTAAGTTCGTGTTCGTGAGAGC	65	-	chr2R	19491303	19491368	19491303..19491368	CG17664-RA,	FBgn0034883,	CG17664,	1	.
CG31159-RA	AATACCAGATGCCGTGTACTTCTGTTCGATCGAGCCTCCCAGTGTATCCTCGCAAACGGCCATGG	65	+	chr3R	18441102	18441167	18441102..18441167	CG31159-RA,	FBgn0051159,	EF-G2,	1	.
CG14303-RA	TGCAGATAGCCCCATGTCTCTCGGAGTTCACAAAGCATGAAATCAGCCTGATCCAGGAGACGAGCACTT	69	+	chr3R	14474854	14474923	14474854..14474923	CG14303-RA,	FBgn0038633,	CG14303,	1	.
CG17923-RA	GCTCTGGGCACTATAGCAATTCTATGCATCGATATCGGCACTGATATGCTTCCGGCAATATCGCTAGCT	69	.	.	.	.	.	CG40625-RB,CG17923-RB,	FBgn0085503,FBgn0040037,	CG40625,JYalpha,	2	.
CG3578-RA	CGCCTTCGGAACTTAAGAGCATGGAGAAGATGGTCAACGGACTGGAGGTTCAACACAATGGCAGT	65	+	chrX	4377392	4377457	4377392..4377457	CG3578-RA,CG3578-RB,CG3578-RC,	FBgn0000179,	bi,	1	.
CG5346-RA	ACCATAGTCGGTCGAGCCATCCATCGCATCTCTACCTAAGCTGGGATGAAGTTCGTTGTGGGAACGGAT	69	-	chr3R	18345953	18346022	18345953..18346022	CG5346-RA,	FBgn0038981,	CG5346,	1	.
CG17788-RA	GGCACCAAAAGCGTCGGCCTCAAACGCGTCTCCTTTGGGTCCTCGAAGGGTTCGATGGTGGAGAC	65	.	.	.	.	.	CG42258-RC,	FBgn0259143,	CG42258,	1	.
CG18324-RA	ACAAGGGCTTGGTGGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACAAGGGCT	69	+	chr2R	10057435	10057504	10057435..10057504	CG18324-RB,CG18324-RA,	FBgn0033905,	CG18324,	1	.
CG13424-RA	GGATGACAACATGGACGACGGCAAAAGTGATATCGATTTGGCCTCAGATGATGGAAACGGCCTTGGTGA	69	.	.	.	.	.	CG13424-RA,	FBgn0034520,	lms,	1	.
CG5694-RB	TGTTGCTGCAAAAGAACAACAGTTCCATTAGCGAAAACGTACAGCATATGATGGTTGAGCCACCACCTT	69	-	chr2L	10229243	10229312	10229243..10229312	CG5694-RA,CG5694-RB,	FBgn0032197,	CG5694,	1	.
CG31299-RA	CACTTCAAGTTCCTGCAGACCGTGTTGGGTAGCCAGAACTACGCAGGCATCTTCTTCCCGAAACC	65	+	chr3R	7033279	7033344	7033279..7033344	CG31299-RD,CG31299-RC,CG31299-RE,	FBgn0261808,	cu,	1	.
CG9735-RA	GTTGGAGGAGGTGAGAGTGGCTTACAGCAAAGGCGAAATGCTTACGGGCGAGATCAAGAAGCTGG	65	-	chr3R	5091209	5091274	5091209..5091274	CG9735-RA,CG9735-RB,	FBgn0010803,	Aats-trp,	1	.
CG3663-RA	TCGACTTGGTTCGAGATAAGAACAACCCCAAGTTCGATGTGGTCCGGAAATTGGTGAACCAGCCGTC	67	+	chr2R	20549743	20549810	20549743..20549810	CG3663-RA,	FBgn0035044,	CG3663,	1	.
CG6914-RA	AGCTGGAAAGGCGCAAATCGAGGTCCAACGGGTTTGTTACAGGCCACAACAATAAATTTGCATGCTTAA	69	+	chr3L	22600149	22600218	22600149..22600218	CG6914-RA,	FBgn0037172,	CG6914,	1	.
CG18490-RB	AGTCGGCGCAATCCAACAACTTTTTGCGTAAGAACGATGCCAAGAGCACTCTGAAGCCAGCAGATCAAA	69	+	chr3L	11219428	11219497	11219428..11219497	CG42671-RF,CG18490-RC,CG42671-RC,CG42671-RD,CG42671-RE,CG42671-RG,CG42671-RH,	FBgn0261553,	CG42671,	1	.
CG4203-RA	TGGTTTTGCTATCGCACGTCTTTCTCAGCATCGGAAACTCAAAGGAAAGCATGAACATGGTGACGCCGG	69	+	chr3R	11036565	11036634	11036565..11036634	CG4203-RA,	FBgn0038300,	CG4203,	1	.
CG32352-RB	GGCTGGCTTTTACAAGTTCCACGACTTACAGGATGCTCAATCCACAGCCAGTTCTGGCAAGAAAGTGGT	69	+	chr3L	8587796	8587865	8587796..8587865	CG43078-RA,CG43078-RC,CG43078-RB,CG43078-RD,CG43078-RE,CG43078-RG,CG43078-RH,CG43078-RI,CG43078-RJ,	FBgn0262508,	CG43078,	1	.
CG33304-RA	TGGTTACGACAACTTCACCAATGCCGATCACCATGGCGTCGATGTTGTGAGCAGCAATACGCGAT	65	-	chr2L	10368695	10368760	10368695..10368760	CG33304-RA,	FBgn0041723,	rho-5,	1	.
CG5282-RA	TGCCCTTGTATGAGGAGTGGATTCCGCACGAGTCCATCGAAAGCAATTCCTATTGCCGATATCCCGAGT	69	-	chr3L	20417603	20417672	20417603..20417672	CG5282-RA,	FBgn0036986,	CG5282,	1	.
CG17836-RA	CCAGATCAAAACCGAGCTAGCTCCAGCATTCAGTCCGACCACACCGGAGATTATCAACCAGCTCCTGAA	69	+	chr3R	14751439	14751508	14751439..14751508	CG17836-RB,CG17836-RA,CG17836-RC,CG17836-RD,CG17836-RE,	FBgn0261113,	Xrp1,	1	.
CG8023-RA	CGCGCACCAATGCTTTTCGAGATAGATATCGGTTGTACCATGAATAAAGTATTGCGTAGAGCAGT	65	+	chr3L	8223603	8223668	8223603..8223668	CG8023-RA,	FBgn0035860,	eIF4E-3,	1	.
CG4755-RA	CACCTTCGCCTCCTACCACCAATGGAAATGGGATAATTATGACCACATCACAGACTTCGCACCGACCAC	69	+	chr3R	15738084	15738153	15738084..15738153	CG4755-RA,	FBgn0038747,	RhoGAP92B,	1	.
CG10142-RA	CCACCTCTACAAGATGCAACTACCCTTTGGTCTCGACACGGAGCCATGTCCTGGATTTGGAGCTGC	66	-	chr2R	20777053	20777119	20777053..20777119	CG10142-RA,	FBgn0035076,	Ance-5,	1	.
CG11739-RA	TGAGCCCTCTCCCACGAGTCAACATCGACGAGCCGAAATATGATCAGAACTCCTACTTGGGCAGAGC	67	+	chr3R	205178	205245	205178..205245	CG11739-RC,CG11739-RA,CG11739-RD,CG11739-RB,	FBgn0037239,	CG11739,	1	.
CG7461-RA	CGGCAAGGAAGGTGATGGATTCAAGGTTGCCATGAACATATTGAACAACGGTCGGTTTGGAATGGGCGC	69	+	chr2R	15193615	15193684	15193615..15193684	CG7461-RB,	FBgn0034432,	CG7461,	1	.
CG5735-RA	AGGTGTCCCTTTGAATAGCCACCAGAGTCTACAGTTTTAGAGGCGAGAAACGAAAGCAACATAGTTTTT	69	-	chr3L	8935581	8935650	8935581..8935650	CG43113-RD,CG43113-RB,CG43113-RC,CG43113-RA,CG43113-RH,	FBgn0262573,	orb2,	1	.
CG6303-RA	TGTGCTGGTGCAAAAAACCACAGATGCTGATGCGCTAATCAACATGTTGCATACCAACGAAGACGGCA	68	-	chr3R	6139724	6139792	6139724..6139792	CG6303-RA,	FBgn0037808,	Bruce,	1	.
CG17121-RA	CGTGGACATTCTGGTCAACAATGCCTCCCTCATGCCCATGACTTCAACACCCAGTCTGAAGAGCGATG	68	-	chr3R	18871292	18871360	18871292..18871360	CG17121-RA,	FBgn0039043,	CG17121,	1	.
CG14426-RA	AGATTAACATAGAGCCATTTGTATAGCCAATATTGTGATAGCTCGTAAGCCCAAAAAAAAGTTCTGAAT	69	+	chrX	6944272	6944341	6944272..6944341	CG14426-RB,	FBgn0004143,	nullo,	1	.
CG2987-RA	CAAGCTGGTCAAGTCGTTCCACGTACTGGCAACGAACTACGACATCGACAATCTGAACCAGCGCTCCT	68	+	chr2R	19847233	19847301	19847233..19847301	CG2987-RA,	FBgn0029105,	alpha-catenin-related,	1	.
CG11111-RB	TGCCAGCTACTGGGAGAGTCCGGATGTGATTGCCTTTATTCTACGGCAGATTGGCAAATTCGAGGGC	67	+	chrX	13666918	13666985	13666918..13666985	CG11111-RC,CG11111-RD,CG11111-RB,CG11111-RA,CG11111-RE,CG11111-RF,CG11111-RG,CG11111-RH,	FBgn0003218,	rdgB,	1	.
CG10571-RA	GCTTTGAGTCTCCTGCCTACCGCTACTCAAGTCCCTATGACCGCTACCTGTCGCAGTAGTAACGCC	66	+	chr3L	12588524	12588590	12588524..12588590	CG10571-RA,CG10571-RB,	FBgn0015904,	ara,	1	.
CG14997-RB	TCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGCAGAGGCCCTGATGAAACTGATCAAGAGGAGAAAT	69	+	chr3L	4241532	4241601	4241532..4241601	CG14997-RB,CG14997-RA,	FBgn0035515,	CG14997,	1	.
CG18745-RA	AGCTGGCTGTTGAAGAAGTAGCCACTGCTCCAAACTCTTCAAGTCCATGGTCTGTCGACGCATCCA	66	-	chr3R	3609988	3610054	3609988..3610054	CG18745-RA,	FBgn0042102,	CG18745,	1	.
CG10798-RA	CAAGCTTCACCACCTCCAGTTCGAACAAGGGACGCAAACGATCCAGTCTGAAGGATCCAGGCTTGTT	67	+	chrX	3278737	3278804	3278737..3278804	CG10798-RA,	FBgn0262656,	dm,	1	.
CG31935-RA	GTTCGGGCCTGACCACCCAAATGATGTGTACTTCATTGCTCTCCGATATGGAAGCCTTCAAGGCCG	66	-	chr2L	1595963	1596029	1595963..1596029	CG31935-RA,	FBgn0051935,	CG31935,	1	.
CG10053-RA	GTGCCACCTAAGCAAGAACCATACAGTCCCTCGGAGCAATTAGAACTCCTCACTGGCTACCTGCGC	66	+	chr3R	3073679	3073745	3073679..3073745	CG10053-RA,	FBgn0037490,	CG10053,	1	.
CG18437-RA	TGTCGCCCTATGATCCGGAGTCCATGGCCTGTCGGGGTCTGCAACGCTATATGCAGGCGGTTTTGCC	67	+	chr3R	23500103	23500170	23500103..23500170	CG18437-RB,	FBgn0039536,	CG18437,	1	.
CG32243-RA	AGTCAAGGGGCAGGAAATAAACCTGCGAGAATACGGAACCCAACTCAAGAAACATATTGCAAGCTCAGA	69	-	chr3L	4539746	4539815	4539746..4539815	CG32243-RA,	FBgn0052243,	CG32243,	1	.
CG15207-RA	CCAGAGGCATCGTTAGCGTTACAGCAGCCCATTTAGAACGCCCGGATTATCGAATCATCCCACATCCC	68	+	chrX	10802787	10802855	10802787..10802855	CG15207-RA,	FBgn0030248,	CG15207,	1	.
CG3570-RA	GCGTAAGAAGGCTACCAGCAAGCCACTACGAGTGCGTCATTTTCAGTTTGCTACTGGAATACATGCCCA	69	+	chr2R	20491713	20491782	20491713..20491782	CG3570-RA,	FBgn0035035,	CG3570,	1	.
CG3515-RA	GCCGAAGACTAAAATGTGTACCGATCTTTTGGTAGAATAAAGGCACGGGTTGTTCATCAGCTGGCTGCT	69	-	chr2L	2551339	2551408	2551339..2551408	CG3515-RA,	FBgn0031431,	CG3515,	1	.
CG6386-RB	CGCGGACACCAGCCGTCACTGTGCGGAAATACCAGGGATAGGAGCCTTTGTTTTCTGTATTTTTACATT	69	-	chr3R	22690362	22690431	22690362..22690431	CG6386-RA,CG6386-RB,	FBgn0027889,	ball,	1	.
CG31917-RA	ACGACAAGGACGCTTAGAACCTACACAACCCATAAAATCCAATAGCCAAAAGTAAAAACCTAAAA	65	-	chr2L	5010438	5010503	5010438..5010503	CG42373-RB,CG31917-RA,	FBgn0259719,FBgn0031668,	Tfb5,CG31917,	2	.
CG11356-RA	GATCTGGGTGCGGATCCAATGGTAATGCAGGGCACATTCTCACTGCTAACCGATTGCCTTGTGGG	65	-	chrX	11997448	11997513	11997448..11997513	CG11356-RA,	FBgn0030375,	CG11356,	1	.
CG17633-RA	GCCGTGAACAAGCGTTACGGTACCACGTACACTGGAGGCAACATTTACGATGCCATCTACCCAGC	65	+	chr2L	9770112	9770177	9770112..9770177	CG17633-RA,	FBgn0032144,	CG17633,	1	.
CG17559-RA	CGGCGTTTCCATTGAGGATCACACCACACCGTTTGTCCTCTATCCCGCTCTGAACAATACCCGCAAC	67	-	chr2L	19339915	19339982	19339915..19339982	CG17559-RA,	FBgn0024245,	dnt,	1	.
CG14895-RA	TCGGCCGGATATCAAGAGCTGGGATAAGCTGAGTCCCAACCTTCAAGACTTTCTCGATCGCTGTCTCCA	69	-	chr3R	12277052	12277121	12277052..12277121	CG14895-RA,CG14895-RC,	FBgn0044826,	Pak3,	1	.
CG41123-RA	GAAATGCGTTCTCTTGGTATCCTACCCCTGATACGACATATTTTAAAGGGTATCACAAAAAATTATC	67	+	chr2RHet	1874121	1874188	1874121..1874188				0	no match
CG14675-RA	TCCATCGCTGGAACAGGGTTTGAGCAAACTCGTGGAGAAGTTTCAGAACTACCAGGACCAGCAGTCGAA	69	+	chr3R	1656936	1657005	1656936..1657005	CG14675-RA,	FBgn0037385,	glob3,	1	.
CG1074-RA	TCGAGTCCATGGATTACCTGCCAATAGAGGGAACGGTCAATCTGGAGAAACCCGTGGTGGAGTGG	65	+	chr3R	260629	260694	260629..260694	CG1074-RA,	FBgn0037250,	CG1074,	1	.
CG7581-RA	AAGAAGCGCCTTTGTCAGTTCCACGAATACGATACCTCCATATCCACGCTCAACTTCAGCTCCGA	65	-	chr3R	25500117	25500182	25500117..25500182	CG7581-RA,	FBgn0025457,	Bub3,	1	.
CG33491-RA	GTCTTCGAGGAGTACAAGGAGCTCTCCGGGCAGACCATCGAGCAGGCCATCAAGCACGAGATGTC	65	.	.	.	.	.	CG33487-RA,CG33496-RA,CG33498-RA,CG33491-RA,	FBgn0053487,FBgn0053496,FBgn0053498,FBgn0053491,	CG33487,CG33496,CG33498,CG33491,	4	.
CG5199-RA	GCTAAAAATGGAGGATAGACCTGTGGGGCAGACGAACACAGATGCGACGCTACCATCCCTGTTGCAG	67	-	chr3L	20445075	20445142	20445075..20445142	CG5199-RA,	FBgn0036994,	CG5199,	1	.
CG7924-RA	AATGAACACCTTCAACTGCAAACACCGCGATTTGTCGTTCCGTGCAGTGGATGAGGATGTGTGCC	65	+	chr3L	14227499	14227564	14227499..14227564	CG7924-RA,	FBgn0036416,	CG7924,	1	.
CG30065-RA	CTGGCGGAAGTTGTTAAACTGAACGTGACACTTTTAACCTAATTGGCAAATAAACGAGAGCCCGAGTCC	69	+	chr2R	9321022	9321091	9321022..9321091	CG30065-RA,	FBgn0050065,	CG30065,	1	.
CG17959-RA	GGCTGAGCAGTTGGCAAAATTCAAAACGCAGAAGGACGAATATGGCGGTGATCTGGTGGAGGAAGAGGA	69	+	chrX	2841280	2841349	2841280..2841349	CG17959-RA,	FBgn0029647,	CG17959,	1	.
CG3389-RA	TTCCGAGGGATTGGAGAACGTACGCAAAGCTCCCTTCCTTCTCGATCAGGAAACCGGAGAAGTGC	65	+	chr3R	10466158	10466223	10466158..10466223	CG3389-RA,	FBgn0038247,	Cad88C,	1	.
CG3585-RA	TGGTCAAAGTTCCGAGAACAAGAACATCAACATCTGGGACACATTGCTTCCCCACAAAAAGTCCTGTGT	69	-	chrX	6136104	6136173	6136104..6136173	CG3585-RB,	FBgn0023458,	Rbcn-3A,	1	.
CG13610-RA	TTCTGGGCAGCATTGTGTTTGGTCAACTGAGCGATAAGTACGGAAGAAAACCCATCCTCTTCGCCTCAC	69	+	chr3R	20099575	20099644	20099575..20099644	CG13610-RA,	FBgn0086365,	Orct2,	1	.
CG32561-RA	TGAAGACGCAGCCATCCGTTCGGATGACGACACAAACCTGGTTCAGCGGGAATCACAGAAGATATCG	67	-	chrX	17047322	17047389	17047322..17047389	CG32561-RA,	FBgn0016080,	xmas-1,	1	.
CG9927-RA	ATTAAAAGTCATGCGAACTGGAATTATCAATATGCTGGTCCTGTACTTCGATGTCTTGTTTCCGT	65	-	chr3R	9770665	9770730	9770665..9770730	CG9927-RA,	FBgn0038189,	Art6,	1	.
CG11508-RA	ATGTGCCCTCCACTTTTACTGCTCTAAGCCAGCACAAGGACAAGTCCCGTAAGTGTCCCTTTGGC	65	-	chr2R	4017818	4017883	4017818..4017883	CG42516-RA,CG42516-RB,CG42515-RA,CG42515-RB,	FBgn0260390,FBgn0260398,	CG42516,Pbp49,	2	.
CG14719-RA	CAAGTGGCATCCAATACTACAACCGAACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAG	69	+	chr3R	7530103	7530172	7530103..7530172	CG14719-RA,	FBgn0025821,	I-t,	1	.
CG18578-RA	AGAACTGATGAAATCCAACCAGACCTTCGATGCCGTAATATCCGAGGTGTTCCTGAACGAAGCTCAC	67	+	chr3R	6983914	6983981	6983914..6983981	CG18578-RA,	FBgn0040259,	Ugt86Da,	1	.
CG5271-RA	ACTCCACTCCCAAGAAAATCAAGCACAAGAGGAAGAAGGTCAAGCTAGCTGTCCTGAAATACTACAAGG	69	+	chr2L	10409983	10410052	10409983..10410052	CG5271-RA,	FBgn0003942,	RpS27A,	1	.
CG31119-RA	TCCATCACTGTTGCTCGTACAGAGGCGGTGGTTTCTGTCCATATGCTGACATCTCGCTGCTCATCG	66	-	chr3R	20681321	20681387	20681321..20681387	CG31119-RA,CG31119-RB,	FBgn0051119,	HdacX,	1	.
CG1115-RA	ACGAAGTTCTCCAGGTGCTCCGAACACAAAAGACCAGTGTTTTCGAGGACAACAGGAGTCGGGCG	65	+	chr3R	1052097	1052162	1052097..1052162	CG1115-RA,CG1115-RB,CG1115-RC,	FBgn0037299,	CG1115,	1	.
CG7574-RA	GCGATGTGCTGTCCATAAACTCCGACTACGAAGCCTCGTTACCACTATCAGCCTTAGAGGATTCCCAGA	69	-	chr3L	8048382	8048451	8048382..8048451	CG7574-RA,CG7574-RB,	FBgn0026263,	bip1,	1	.
CG6188-RA	GGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTTGAAGTACGCCCTCAAGGAGC	68	+	chr3R	8500741	8500809	8500741..8500809	CG6188-RA,	FBgn0038074,	CG6188,	1	.
CG32491-RW	TAGCAAAAAACTCTGGCTTTAGTTAGTTATTTTATTGGAAAAATATTTAGTCAAGAGCCAACAAACG	67	-	chr3R	17202788	17203066	17202788..17202798,17203009..17203066	CG32491-RG,CG32491-RH,CG32491-RI,CG32491-RJ,CG32491-RK,CG32491-RL,CG32491-RM,CG32491-RN,CG32491-RO,CG32491-RP,CG32491-RQ,CG32491-RR,CG32491-RS,CG32491-RT,CG32491-RU,CG32491-RV,CG32491-RW,CG32491-RX,CG32491-RY,CG32491-RZ,CG32491-RA,CG32491-RB,CG32491-RC,CG32491-RD,CG32491-RE,CG32491-RF,CG32491-RAA,CG32491-RAB,CG32491-RAC,CG32491-RAD,CG32491-RAE,	FBgn0002781,	mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),mod(mdg4),	1	.
CG4840-RA	CCACGGACAGTGAATCTCATCCGACAACGACACCAGGTCACAGAATCTCAAGTTCATCGCTGGAGGCAT	69	+	chr2R	9340371	9340440	9340371..9340440	CG4840-RA,	FBgn0086757,	cbs,	1	.
CG10732-RA	AGCTCACTACATGGACTACATCGAGCTACCCCAGATTACTCCAGTGGACACTACTCCTACGCTCGGACA	69	+	chr3L	13440928	13440997	13440928..13440997	CG10732-RA,	FBgn0036365,	CG10732,	1	.
CG7698-RA	ACACGGACTACCAGCAGACCAGTGAATTCATCCGCCTACTAAAGCCAACGCATGTCGTGCTCGTC	65	-	chr3R	14487790	14487855	14487790..14487855	CG7698-RA,	FBgn0261065,	Cpsf73,	1	.
CG3327-RB	GATCCGGTACACCTCCATGATCCACTACGCCTACCAGAACATGCAGATTCTCGAGTTCCGCGAGG	65	-	chr2L	3335926	3335991	3335926..3335991	CG3327-RA,CG3327-RC,CG3327-RB,	FBgn0020445,	E23,	1	.
CG7000-RA	AGCCCTTGCCTTCAGCAAATCCAAAGCAATCTTCTACTGTGCACCCTGTTCAGTTGCCCAATACTCTGA	69	-	chr3R	16991503	16991572	16991503..16991572	CG7000-RA,	FBgn0260004,	Snmp1,	1	.
CG6518-RA	TCTAGCCCTATCCGGACGTCCTCCTTTCCTCGTCTCCATGCACTCATGTTTCCAGACTATGGACCGATT	69	+	chr2R	12787864	12787933	12787864..12787933	CG6518-RA,	FBgn0004784,	inaC,	1	.
CG7518-RB	TTGAGTTGAACTCCTCACATTCATAACAGTCTCTCACATACGCAGACATTTCATCGATGAAAAGCAGAA	69	+	chr3R	8833913	8833982	8833913..8833982	CG7518-RD,CG7518-RE,CG7518-RF,	FBgn0038108,	CG7518,	1	.
CG10220-RA	CGTGACGCCCTTTGAGCGAAAGTTTGTGAAGCCCTTCACCGTCTTTGGATTCGATGTTTTCCAGGCG	67	-	chr2R	10745733	10745800	10745733..10745800	CG33506-RA,	FBgn0053506,	CG33506,	1	.
CG15034-RA	CAGTCCTACGGCTCGAACATTTGGATATAGTTTAGTTTTCTCTGACCCGGTGAACGATAAGCAACCAAA	69	-	chrX	7241456	7241525	7241456..7241525	CG15034-RA,	FBgn0029946,	CG15034,	1	.
CG17784-RA	TGGTCCACAGAGTTCTGACCTGGCTTTTGTTTCTCCTCAGTTTGCTATTCACCATTGACTTGGTGCTGA	69	-	chr3R	20190632	20190701	20190632..20190701	CG17784-RA,	FBgn0039192,	CG17784,	1	.
CG31241-RA	GGCCAAGCATAATGCCGGCATTTATGGTGTGGCCCATAAGATCGAGTTTATCCACGCCGATTTTCTGC	68	+	chr3R	14082933	14083001	14082933..14083001	CG42350-RA,CG31241-RB,	FBgn0261019,FBgn0260241,	moi,tatl,	2	.
CG1789-RA	CGGGCGCAGAACAAGAATCCCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGA	68	+	chrX	8614803	8614871	8614803..8614871	CG1789-RA,	FBgn0030063,	CG1789,	1	.
CG10587-RA	GTTTCCGGTTGGGGTCTCACCGAGAACAGTGAGTTTGGCCCACAGAAACTATTGCGTACGGTGAC	65	-	chr3L	20955085	20955150	20955085..20955150	CG10587-RA,CG10587-RB,	FBgn0037039,	CG10587,	1	.
CG14803-RA	TCAGGTCTGGGTGAAGTCTCTGGTCCTCCTAAACGCACAACACGAATCTGTATTGGCTTTAATGCCCCA	69	+	chrX	1765228	1765297	1765228..1765297	CG14803-RA,	FBgn0023513,	CG14803,	1	.
CG1451-RA	GGCCAAAACCAAGCAATCGTCATCCAACCTGAGGACGCAGAAAACCAAATCTTCCAACATGCTCAACGC	69	-	chr3R	24659062	24659131	24659062..24659131	CG1451-RA,	FBgn0015589,	Apc,	1	.
CG5642-RA	CGCATCCCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTTCTTCAACTACTGCGACTTCTTCAAC	69	-	chr3L	12137978	12138047	12137978..12138047	CG5642-RA,	FBgn0036258,	CG5642,	1	.
CG31311-RD	TCTGAAACAAGCGCGCTTAAAACAGATAATGTAGATAAGTCCCCGACACCGCCTAAGGGTTAAGCCAT	68	-	chr3R	9536619	9536687	9536619..9536687	CG33748-RA,CG33748-RB,CG33748-RC,CG33747-RB,CG33747-RC,	FBgn0040077,FBgn0040076,	primo-1,primo-2,	2	.
CG33222-RA	ATACACCGTGGAAGCCAACGTATCCGCGCTGACTTTGGTCGTTCTCAAGAAGAATCCCTCCCCAT	65	.	.	.	.	.	CG33222-RB,CG33222-RC,CR11386-RB,	FBgn0053222,FBgn0260447,	CR33222,CR11386,	2	.
CG5888-RA	CGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCAGTCGATCGAGCTCTTCAATTGCGGTG	68	-	chr2L	16405164	16405232	16405164..16405232	CG5888-RA,	FBgn0028523,	CG5888,	1	.
CG31713-RA	CGACAAGTTCCACCAAATGATTTTAGATCAAAACAAACCAATGTGAACTGAAAACAATTGCCGGT	65	-	chr2L	9938232	9938297	9938232..9938297	CG31713-RA,	FBgn0051713,	Apf,	1	.
CG14187-RA	GGCAACAGTTTTCTTGTTGGTTTCACAGCTTTGCTTTGCCCTGCCCTTTGCATCTTCCACCGGAAACG	68	-	chr3L	20105722	20105881	20105722..20105770,20105861..20105881	CG14187-RA,	FBgn0036938,	CG14187,	1	.
CG32048-RA	GGGCACCATGAATCGGAATTCCTTTGCCGGGAGTTCGTCCTTGAACGAGGATATACGCCTGAGCATC	67	+	chr3L	9586401	9586468	9586401..9586468	CG32048-RA,CG32048-RB,	FBgn0261555,	CG42673,	1	.
CG31859-RA	CCGCAATCCTTTGGCCCAAAAGTGAAAGGATCTCGAAGCAGGATATTCGATCGACGTCGATATGCGT	67	+	chr2L	12608483	12608550	12608483..12608550				0	no match
CG15007-RA	CCGACAGCATTGTCAAGCACAAAGCACCATTGGAAAACCACTATCCACCAGCAAATCTAGTCATGGCCC	69	-	chr3L	4211465	4211534	4211465..4211534	CG15007-RA,	FBgn0035511,	Cpr64Ab,	1	.
CG5654-RA	CGCGTTTTTTCGGTTTGTTTGCTTTTTGTTTAGTTTCGTAGGGCAGAGAATCAATTGTACAACTCATAC	69	-	chr3L	12114951	12115020	12114951..12115020	CG5654-RA,CG5654-RB,	FBgn0022959,	yps,	1	.
CG6431-RA	GCCCGGCCTTTAATTGAGCGCATGAAGAGCAACAAGTTTCGGTTGTCGATCGATGATGCCAACGTCATT	69	+	chr2L	10728087	10728156	10728087..10728156	CG6431-RB,CG6431-RC,	FBgn0032289,	CG6431,	1	.
CG31492-RA	GCGGCATGCAGGAGATAAGTGCGTTTGAGCAGAACCCACCGGATATGTCACACATGGAACACCCA	65	-	chr3R	2972074	2972139	2972074..2972139	CG33546-RB,CG33546-RD,	FBgn0250732,	gfzf,	1	.
CG14351-RA	CGCTGAACAACTACTGCGATACATCGGACAACTGGACGGATCACGACATGGACATCTATATGGCCCGCA	69	+	chr2L	1606415	1606484	1606415..1606484	CG14351-RA,	FBgn0261509,	haf,	1	.
CG9880-RA	CTCAGCGAGGGTAGGTACTGGAGTTGGTCGATGCTATTGTGCATCTTGGTGTACCTGCCGACACC	65	+	chr2L	2654220	2654285	2654220..2654285	CG9880-RA,	FBgn0026395,	Or23a,	1	.
CG9776-RA	AGTCGTGGCCGACACTTCTCTCGTTCGCCCATAAGATCTAGTCGAAGAAGTCGATCCCGTCAGGG	65	-	chr3R	155033	155098	155033..155098	CG9776-RB,CG9776-RA,	FBgn0027866,	CG9776,	1	.
CG4792-RA	ATCGGTCGTACCTGTTGCAAGCCATGACACATGCCAGTTACACGCCCAATCGATTGACGGATTGCTA	67	-	chr3R	18560560	18560627	18560560..18560627	CG4792-RA,	FBgn0039016,	Dcr-1,	1	.
CG3187-RB	TTCATGGCAGTGGCTATGTGGTCAAGTGCCTGTCATGCGAGTACCGGATCGATCGTCACGAGTTC	65	-	chrX	5559184	5559249	5559184..5559249	CG3187-RA,CG3187-RB,CG3187-RC,	FBgn0029783,	Sirt4,	1	.
CG4781-RA	CGGGGTGAACTGGAAACTCTCCACCTTAAGACTGGACGCTTGTAGCCTAAATGATCTTCACCTGCCCGT	69	-	chr2R	20529058	20529127	20529058..20529127	CG4781-RA,	FBgn0035043,	CG4781,	1	.
CG18402-RA	AGGCAGCGGTATGGCCATTAGCGACAATCCTAACTACAGACTACTAGACGAGTCAATAGCCAGCGAACA	69	-	chr3R	17399620	17399689	17399620..17399689	CG18402-RA,CG18402-RB,CG18402-RC,CG18402-RD,	FBgn0013984,	InR,	1	.
CG10702-RB	TGAGGACTCTCGTTTCATTGCGGACATGAGGGAACAATATCGCTGCACCCTTGATGATCGCGAGCA	66	-	chr2L	19066103	19066169	19066103..19066169	CG10702-RB,CG10702-RA,CG10702-RC,CG10702-RD,	FBgn0032752,	CG10702,	1	.
CG3324-RA	CCTGGACAGGGATTCCTTCAAGCGGCTAATTGGGGATCTATGCGAGCTGAAGGAGAAGGACTACGG	66	-	chr2L	787425	787491	787425..787491	CG3324-RA,	FBgn0000442,	Pkg21D,	1	.
CG32804-RA	AAAACAAAACAACTGGAATATCGCGTGGAAGGGAGGATGAGAGCCTGGGAGCGTGCAACAGGTCG	65	+	chrX	1965901	1965966	1965901..1965966	,CG4199-RC	,FBgn0025628	,CG4199	1	.
CG14838-RA	GGCGGTGGTATCATTACAGCGATAACGGAGCATCGACCCTCGCTTCCACATAAGATCTTGGGCATTGGT	69	+	chr3L	7579232	7579301	7579232..7579301	CG14838-RA,	FBgn0035799,	CG14838,	1	.
CG8005-RA	TATATCGTGGGGCAAGATCAGGAAGGATGCCACCCCTGTTAAGGTGTATGCCGAGGCTAGCTTGG	65	+	chr3L	8192405	8192470	8192405..8192470	CG8005-RA,	FBgn0035854,	CG8005,	1	.
CG15666-RA	TCCGACTATGTGGAGACCTTCGCCATGATTCTTGAGCGGATTGTGGAGAGAACTCTGCAGCTGGACAG	68	+	chr2R	17231535	17231603	17231535..17231603	CG15666-RD,	FBgn0034622,	CG15666,	1	.
CR32896-RA	CTTTGTGATGAGCATCCTTTTAAAGCCAAACAGTTATCCCTGTCATAAGAATAATTGATGATACA	65	+	chr2R	13589194	13589259	13589194..13589259	CR32896-RA,	FBgn0063374,	snoRNA:snR38:54Eb,	1	.
CG2917-RA	CGGGTGGCAAGCATTCCAAGAGCGTGATCTTTATTCTCGAGGAGTTCGACCTCTTCTGTGCTCACCACA	69	-	chr2R	20684286	20684355	20684286..20684355	CG2917-RA,CG2917-RB,	FBgn0023181,	Orc4,	1	.
CG7543-RA	TAGGTTGTGGGTAGTGACAGGAGGGATTCGTGGGTTTGCCGGATTCGAAGGATTCGTGGGCTTAG	65	+	chr3L	11475816	11475881	11475816..11475881				0	no match
CG31062-RA	ACAGTTTCGTTTGAATAATTTAGAACCGGGACGTGAATATCAATTTTTAGTTTACGCCGTCAACG	65	-	chr3R	23212850	23212915	23212850..23212915	CG31062-RA,CG31062-RB,	FBgn0016061,	side,	1	.
CG3620-RB	GGCTGTGCTAAGATTTGGCGTTTATGAAGAAAGCGGAAAGATTCTGGGTCAACGTATTCTGCCGCTGGA	69	+	chrX	4253646	4253715	4253646..4253715	CG3620-RD,CG3620-RC,CG3620-RA,CG3620-RB,CG3620-RE,	FBgn0262738,	norpA,	1	.
CG5382-RA	TGACCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATGGTTCAGTCTCATCCAA	69	-	chr3R	18191435	18191504	18191435..18191504	CG5382-RB,	FBgn0038950,	CG5382,	1	.
CG8946-RA	ACCGTTCGGTGATCGGAGAAGTGACTCGCCTATTCCTGCACTCCATGTACTACACTCCCAGCCAGAAAT	69	-	chr2R	12976226	12976295	12976226..12976295	CG8946-RB,CG8946-RA,	FBgn0010591,	Sply,	1	.
CG8800-RA	TGTGGCTCAGCTACAACCTAATCGAGAAAATTAAGGGTTTGACTGGTCTGAAATGCCTGAAGGTGCTCT	69	-	chr2R	5283106	5283175	5283106..5283175	CG8800-RA,	FBgn0033408,	CG8800,	1	.
CG4382-RA	TGCAGCTACTTCGATGGGTCAAGTTGCACATCTCTCGCTTTGGAGGAGATCCTAGCTCTATCACCCTCT	69	-	chr2L	9600174	9600243	9600174..9600243	CG4382-RB,	FBgn0032132,	CG4382,	1	.
CG9380-RA	TCTGGGAGGACGATCATTAGTTGCACTTTTAATACCCAGTCCGCTGTCCTACGTGGATGAGGAGGACTA	69	-	chr2R	21072019	21072088	21072019..21072088	CG9380-RC,	FBgn0035094,	CG9380,	1	.
CG32656-RA	ATGCCACAATCAACTGCACTTAAATATTGGCAATGATATTCTATCTCCATTTCCTGGGTCCTATCTAAT	69	+	chrX	11959034	11959103	11959034..11959103	CG32656-RA,	FBgn0052656,	Muc11A,	1	.
CG8910-RA	CCCGTGTAACCGTACTATATCAAGCCAGATAGGATCGGATGGAATCAGACCTCCAACTCACACACCTCA	69	-	chr2R	12763214	12763283	12763214..12763283	CG8910-RA,	FBgn0025833,	CG8910,	1	.
CG5429-RA	TCGCTGAGGACGAGTGGGATGTGTACAAGGCTTATTTGGATGAACTAGAGCAACAGCGTGTAGCACCCA	69	-	chr3R	19875849	19875918	19875849..19875918	CG5429-RA,	FBgn0010709,	Atg6,	1	.
CG6901-RA	TGGCGTTCTTCGTGTGATTGGAGTAATGGTGGCTTTGATATTCCTGGACACTTTGGGTCGCAAGG	65	+	chr3R	12150276	12150341	12150276..12150341	CG6901-RA,	FBgn0038414,	CG6901,	1	.
CG4351-RA	CCGCCTTGCCTCAAAGTGTTACAATCCCTGTATAAATGGGCTCTCTCAAAGACGGTGTGCCAAAAAAAA	69	-	chrX	12990140	12990209	12990140..12990209	CG43313-RA,	FBgn0263005,	CG43313,	1	.
CG30275-RB	CGAACCTGTGCTCTTCCAAGCCATTCTTCCGTTGCGGTACTTCATCACAAAAGTGACCATGCCTCGGAG	69	+	chr2R	18599403	18599472	18599403..18599472	CG30275-RF,CG30275-RG,CG30275-RH,CG30275-RI,CG30275-RJ,	FBgn0050275,	CG30275,	1	.
CG9514-RA	TCCCCTCAGATATCCGTTGCTCTATCACAACTACCTCACCCATCCGGATGATGTGAATGTGCTGAGGGA	69	-	chrX	14781047	14781116	14781047..14781116	CG9514-RA,	FBgn0030592,	CG9514,	1	.
CG30345-RA	ACCAGGCAACAGTTAACTTCTATCCGGGAATCTTCAACTTCATCAGTGTGGGACTGTACTTCCTGTGCT	69	+	chr2R	5038600	5038669	5038600..5038669	CG30345-RB,	FBgn0050345,	CG30345,	1	.
CG12414-RA	GGCACCCTGGGTTAAGCGCGTCTTTATTGACTTTTTGCCAGCGTTTTTATTCATTAAAAGGCCGACGTA	69	+	chr3L	23257380	23257449	23257380..23257449	CG12414-RC,CG12414-RD,CG12414-RE,CG12414-RF,	FBgn0037212,	nAcRalpha-80B,	1	.
CG1804-RA	TGGGCATCTTCGGAACCGTCTTTCTGCTGATCTCCATCTCGTTTGTGGTCTGTCTCTGCAAACGCACTA	69	+	chr3R	27485994	27486063	27485994..27486063	CG1804-RA,	FBgn0039862,	kek6,	1	.
CG12309-RA	TAGACACTCCATTTGTGGTCCATGCTGCACGAAGAACCGGTGGGGCTAGATGGTGCACATGAAAC	65	+	chr2R	6614597	6614662	6614597..6614662	CG12309-RA,	FBgn0033542,	CG12309,	1	.
CG32600-RA	AGTGTTGAATGTAAATGCGAGATTTGGGCAGACGAAACTCAAAGAGCTCCTTCCAAAGGGCAACAGGCC	69	+	chrX	14355244	14355313	14355244..14355313	CG32600-RA,	FBgn0052600,	dpr8,	1	.
CG12273-RA	GTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGCCAGGTTCCGATTCAAAAAGCAGCAGGA	65	+	chr2R	19582180	19582245	19582180..19582245	CG12273-RA,	FBgn0016762,	angel,	1	.
CG8024-RA	TTCCCATTCCCAGTTTAAGAGCGAGTTTCAACACAGAAACGCCATGTGCCTACGTCCACTCCATGTTCA	69	-	chr2R	5065842	5065911	5065842..5065911	CG8024-RA,CG8024-RB,CG8024-RE,CG8024-RD,CG8024-RC,	FBgn0002567,	ltd,	1	.
CG10618-RA	TGGCCACTAAGGGTCAGTATCCGGAAATCGTGCTGAACGGATTCTTCAAGGAGGAAAACAGGCCGATGA	69	-	chr3R	21149804	21149873	21149804..21149873	CG10618-RE,	FBgn0045761,	CHKov1,	1	.
CG13014-RA	ATTGTTTTGATGCAACAAATATTTAATAAAGTTTAACTAAAGATCATTTATCCGCCGTTACATCG	65	+	chrX	16481964	16482029	16481964..16482029	CG13014-RA,	FBgn0030759,	CG13014,	1	.
CG12400-RA	TGCGCTAAGTGGATCTAAATCTTTGTTGTCAAACGAACGATGGAAGTAGTTAATAAAACAGCTTTAATT	69	-	chr2L	3145138	3145207	3145138..3145207	CG12400-RA,	FBgn0031505,	CG12400,	1	.
CG4435-RA	GCCAGTACCACATAGGCGATTCTTCTCCGGGAGCATCACTCTTTGAGAAGTTCGAGTGTGCAGTGTGCT	69	-	chr2L	9429095	9429164	9429095..9429164	CG4435-RA,	FBgn0032117,	FucTB,	1	.
CG8892-RC	CGCAGACTTTGAACCGCGATGTCTGGTCGGACAAGGAGCTTAAGAAACTGATACGTCGCCAGTTCACCT	69	-	chr2L	4980468	4980537	4980468..4980537	CG8892-RC,CG8892-RB,CG8892-RD,	FBgn0031664,	CG8892,	1	.
CG7927-RA	AGGAACCTCAATCAGCTGCCCAATATGGCCTACTCGTATGCTTTGGCTCTACACACGCTCTATGGCG	67	+	chr3L	8104935	8105002	8104935..8105002	CG7927-RA,	FBgn0027549,	CG7927,	1	.
CG13841-RA	GGCGGATAACAATGGCTATCATGTCAAGTACAACATCACCTTGGATACCGTGGAGCTTGACCGTCGCCT	69	-	chr3R	18592925	18592994	18592925..18592994	CG13841-RA,	FBgn0040588,	CG13841,	1	.
CG18816-RA	CGCCAAGGATGTAATTTCCCAGGTTCGGACCACCACAATGATCTGGTATCTCGTGGGTGCAAAGCGATT	69	.	.	.	.	.				0	no match
CG10641-RA	TCGCACCTACAAAGTGGTCAACGTCTACACCGACTTCCCCGAGTTCTCCCGTAACCAGATCAAGGACTA	69	-	chr2L	18986689	18986758	18986689..18986758	CG10641-RA,	FBgn0032731,	CG10641,	1	.
CG18268-RA	CCAGCCACCTGTAGACTTCCTTTCGGCAATGTGGAGTATGTGCTCAAGGTTGTTCTCGAAAGACGGGGA	69	-	chr3R	3629471	3629540	3629471..3629540	CG18268-RA,	FBgn0037520,	CG18268,	1	.
CG5034-RA	TCAAAAGAGCAAAGCAATGTCTGGATCCTCACACAGCCAGTTTGATTCAAAACTGCAAAAGGACTCGGA	69	+	chr2L	10336254	10336323	10336254..10336323	CG5034-RA,	FBgn0032223,	GATAd,	1	.
CG6687-RA	CGAATTTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTCGTCGACAGGACAAT	69	-	chr3R	11033428	11033497	11033428..11033497	CG6687-RA,	FBgn0038299,	Spn88Eb,	1	.
CG18631-RA	CCTGTGCGACATGGAAGACCTATCCACCTTCTCCAGAGGACGATATGATGAGCCCATATTTAGCGAGCA	69	+	chr2R	13430960	13431029	13430960..13431029	CG43370-RD,	FBgn0263113,	CG43370,	1	.
CG13858-RA	GCACCTCGACGAAGCCGCAGCGCCTGAACAAGGTCTCCTTCGCACCGCTGGACCTTCCGTTTCCC	65	-	chr3R	18144481	18144546	18144481..18144546	CG34377-RA,CG34377-RB,	FBgn0263117,	CG34377,	1	.
CG32650-RA	GACCCAAAGCATGAAGAGGAAGAACGAGTTGTTTCACCATGATTGCGTCTCGGACATCGACGGATCCGT	69	-	chrX	12792534	12792603	12792534..12792603	CG32650-RA,	FBgn0052650,	CG32650,	1	.
CG30187-RA	TCCAGAGACGAGTAGAGTGGAATCAACTGTGCGTCGAACATCCGTACGGAATGGGCTTCATTGGGAGCT	69	-	chr2R	18804596	18804665	18804596..18804665	CG30187-RD,CG30187-RC,	FBgn0050187,	CG30187,	1	.
CG31864-RA	TGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCTGGTTCGTACGCTTCGCCTTCAACGCC	69	+	chr2L	11996106	11996175	11996106..11996175	CG31864-RA,	FBgn0051864,	Qtzl,	1	.
CG30443-RA	AGTCCTCCCGTAAATTAGCCCAGCGTACTAGTCTCGATAAGGAGAAACCCGGGTTTCCCTGCCAGTACT	69	+	chr2R	2541767	2541836	2541767..2541836	CG30443-RA,	FBgn0050443,	Opbp,	1	.
CG6933-RC	CAGTAAACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCTGGCAAGTGC	65	-	chr3L	20211927	20211992	20211927..20211992	CG6933-RA,CG6933-RC,CG6933-RB,	FBgn0036952,	CG6933,	1	.
CG11191-RA	CGGCGGCTTTGTAACCTCCACTTTGCGTCCAGCGATAGAGCACGAAAACCAGTCTTGTGAGAATTACCT	69	-	chr2R	3888299	3888368	3888299..3888368	CG11191-RA,	FBgn0033249,	CG11191,	1	.
CG3283-RA	TCCCCTGCTGTCCTTAACCAGTGAGCTAAGCCTCCGAAAATGTGTATTGGAGACTCCTCCAGCCAACAT	69	+	chr2R	2696507	2696576	2696507..2696576	CG3283-RA,	FBgn0014028,	SdhB,	1	.
Gal4_cds	AGCAACGGTCCGAACCTCATAACAACTCAAACAAATTCTCAAGCGCTTTCACAACCAATTGCCTCCTCT	69	.	.	.	.	.				0	no match
CG40006-RC	GGACGGGGACCATTGCAGCAACATAGAGTTTGCATCTGATGGTACAAAGTTCAAAAGCTTCATTCAGCC	69	-	chr2L	22580964	22581033	22580964..22581033	CG40006-RA,	FBgn0058006,	CG40006,	1	.
CG12467-RA	TGCGGGAAAAGGGATCAGGCAAGTTCGAGAACTCTCGGGTGATTCAACTTAGCTACAAGAACCGTCTGT	69	-	chrX	704734	704803	704734..704803	CG42248-RD,CG42248-RF,CG42248-RG,	FBgn0259100,	CG42248,	1	.
CG10683-RA	GGGCGCACCAAAAGAAGGGGACATTGGCTTGGATTTATCTGGCAGTGATTCCATGGATTCCGAAGTGGA	69	-	chr2R	13519992	13520061	13519992..13520061	CG10683-RA,	FBgn0004400,	rhi,	1	.
CG7305-RA	CAGCCCAGATCAGGTGGCGCCTATCCCGATGATGACCCCAGATACTATCAGGGTGAACTCGATGG	65	-	chr3R	13731258	13731418	13731258..13731272,13731367..13731418	CG33547-RB,CG33547-RP,CG33547-RC,CG33547-RD,CG33547-RF,CG33547-RG,CG33547-RH,CG33547-RI,CG33547-RJ,CG33547-RK,CG33547-RL,CG33547-RM,CG33547-RN,CG33547-RO,	FBgn0053547,	Rim,	1	.
CG13556-RA	GAGCTCAGCATTTCGTATCAAATTTGTGATAACTGTAGAAGTAAGTACAAGCTAACTGGCCGCCG	65	+	chr2R	19378011	19378076	19378011..19378076	CG34372-RC,	FBgn0085401,	CG34372,	1	.
CG13533-RA	CTTTGTGGGCAAGTTCAGTTACCAGCAGAAGTGTGCCGAGAAGATCATGCGCCTACCCAACTCCC	65	+	chr2R	18774475	18774540	18774475..18774540	CG13533-RA,	FBgn0034793,	asrij,	1	.
CG7448-RB	TGTGACCTCTTCAATCCTATACTTCCTTGCTTTATGATCCTGTACTTCTTCACCTCCGAGATCTT	65	+	chr3L	21944260	21944325	21944260..21944325	CG7448-RB,	FBgn0037143,	CG7448,	1	.
CG9364-RE	AGAATCTGTAGCCAGGCCAGAACGCAATCCATCAGACATCATTGTCAGCATCATCACAGGCTCGAAGCC	69	+	chr2R	16974461	16974530	16974461..16974530	CG9364-RE,CG9364-RD,CG9364-RA,CG9364-RB,CG9364-RC,CG9364-RF,	FBgn0003748,	Treh,	1	.
CG11990-RA	ACCCTCACCGCATTCTTAAACGTTCTGCTGAAACACGACACCTGCTGTTTTCAATCCCACTCCCAAGTA	69	+	chr3R	4867662	4867731	4867662..4867731	CG11990-RA,CG11990-RB,	FBgn0037657,	hyx,	1	.
CG1429-RE	GAACTGAACTGACCTGATTGCATGCTTGCTCGAAACTCTAACTAACTCTAACTCTTTAACCGTGC	65	-	chr2R	5806753	5806818	5806753..5806818				0	no match
CR33258-RA	ACCAACCCAAGCCATATTTCGATTCTACGACCAGCCTTTGCGTATCGACGAAACCAACGGGATGCTCCT	69	+	chr3L	16076503	16076572	16076503..16076572	CG33258-RB,	FBgn0053258,	CG33258,	1	.
CG13380-RA	CAGTTCGCAAGAATTTCCACGTACTAATGGGGTAACTAGACTGCGCTTCTCTCTCAACATGCTGA	65	-	chr3L	18608850	18608915	18608850..18608915	CG13380-RB,CG4174-RB,	FBgn0036799,FBgn0036793,	CG13380,CG4174,	2	.
CG4665-RA	TTCCTTAAGTGGACCCAAGATCAGGAGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCAC	65	+	chr3L	9128611	9128676	9128611..9128676	CG4665-RC,CG4665-RA,CG4665-RB,	FBgn0035964,	Dhpr,	1	.
CG10132-RA	CCGGATGCTATGTGGCTTCGATGTGCACGGACCGATCTGAGATCTGCATATGGGACGTGAAGAATTGCT	69	+	chr2L	19523981	19524050	19523981..19524050	CG10132-RA,	FBgn0032798,	CG10132,	1	.
CG14448-RA	TCCTTACCAAAAAAATTGCAACCGTCTTCCCAAAGAAACTAGTTCCTCTATATTACAAGACTCAA	65	+	chr3L	22782288	22782353	22782288..22782353				0	no match
CG4483-RA	TGCGGCGCTTCATACACTGGGGTCCAATCACTCTATTAACCCTGACTCTGATTGTTACGTGGACTGTCA	69	-	chr3L	9229612	9229681	9229612..9229681	CG4483-RA,	FBgn0035970,	CG4483,	1	.
CG3706-RA	GCCACTAATCTTCGGCAAGTACCCACTGAAAGGCATCTTTTACCGGGTGAAGTTCTGGATCGCCCT	66	-	chrX	826249	826315	826249..826315	CG3706-RA,	FBgn0040342,	CG3706,	1	.
CG5495-RA	TGCGCCCATCTTCGAGACGTTTCCAACAAAGTACCCAAAGGCCATCTTCCTGAAAGTGGATGTGGACAA	69	+	chr3L	5759225	5759294	5759225..5759294	CG5495-RA,	FBgn0035631,	Txl,	1	.
CG10574-RA	AGCAATGTCAACCCATCAATCAATCACTAATGTTTACCTAGCGGACAATGGACGATTCTGAGGGCAGCT	69	-	chr3L	9828037	9828106	9828037..9828106	CG10574-RA,CG10574-RB,	FBgn0028429,	I-2,	1	.
CG5395-RA	TTGTTCCCGCCGACATAACAGTCAGTTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAG	65	-	chr2L	10303456	10303521	10303456..10303521	CG5395-RA,	FBgn0005322,	nmd,	1	.
CG13427-RA	GACCAAGTCTCTAACAGCATACGCGGTCCACGCCATCTCCTGAGCAAATTGTTCCAGCCCAAGAC	65	-	chr2R	16426555	16426620	16426555..16426620	CG13427-RA,	FBgn0034514,	CG13427,	1	.
CG3192-RA	TGAGTTTTGAGTGCGAAATGAAAATAAAAAACGTTTGCGAAAATTGAGTGAAAAAATCAATGCGACGGC	69	-	chrX	6572963	6573032	6572963..6573032	CG3192-RA,	FBgn0029888,	CG3192,	1	.
CG9193-RA	TGGCACCCAAGATCGAGGACAACGAGACATAAGTCAGCTGTGTTCCTCATATTTATGTCCCCGCATCGT	69	-	chr2R	16149346	16149415	16149346..16149415	CG9193-RB,CG9193-RA,	FBgn0005655,	mus209,	1	.
CG8422-RA	CAGCTGCATTGCTCTGATCACCCTGTTCCACTTCTTCACCCTGACCAACTTCTTTTGGATGCTGGTCGA	69	+	chr2R	10270776	10270845	10270776..10270845	CG8422-RA,	FBgn0033932,	Dh44-R1,	1	.
CG5134-RB	TCGTGTTTTTTATGATGGATTTGTCGCCAAACAATCAGATCGAGGACAGAAAACCCATCCTAACCGCCG	69	+	chr2R	14054810	14054879	14054810..14054879	CG42517-RC,CG42518-RA,	FBgn0260401,FBgn0260392,	MED9,CG42518,	2	.
CG6637-RA	CCAGGTGGTGGAGGTTTGTCTAGCTGCCAATCACAAAACCGGTGGACTTATGGAGCTGGACGATC	65	+	chr3R	17691298	17691363	17691298..17691363	CG6637-RA,	FBgn0260940,	lsn,	1	.
CG4721-RA	GCTTACATTGGAGACCAGGCAGAAGGCAATCACCAAACTGGAGGCTTTGAAGCTGCACTTCCGGAC	66	-	chr3R	18590544	18590610	18590544..18590610	CG4721-RA,	FBgn0039024,	CG4721,	1	.
CG14014-RA	CTACTGCGTGGTGTACAAGCGAGATCACTACGTGCTCAATAACCCGCCCAACTTCAAGAGCCCCA	65	-	chr2L	5550575	5550640	5550575..5550640	CG14014-RB,	FBgn0031718,	CG14014,	1	.
CG10693-RA	CGGATCGGGGGACCAAGAACTTTAGCCCTGATATCCATCGTTCAACTGCCAACTGATTGCTTCCCACAT	69	+	chr3R	20533556	20533625	20533556..20533625	CG10693-RB,CG10693-RC,CG10693-RA,CG10693-RD,CG10693-RE,CG10693-RF,CG10693-RH,CG10693-RI,CG10693-RJ,CG10693-RK,CG10693-RL,CG10693-RM,CG10693-RN,CG10693-RO,CG10693-RP,CG10693-RQ,CG10693-RR,CG10693-RS,	FBgn0003429,	slo,	1	.
CG5084-RA	TCGCAGGCCTACCGTGCTCAGTCCCAGTTCGTTTCCAATGCCACTCAGATGAATGCCGAGAAATC	65	+	chr2R	13906979	13907044	13906979..13907044	CG5084-RA,	FBgn0034288,	CG5084,	1	.
CG30378-RA	TGCGAAGCTAGGAATTCCAAATTGAAGGCACAAATTAACCACGAACCCCTTTCGAAAGAGCCCAACCCA	69	+	chr2R	3838443	3838512	3838443..3838512	CG30378-RA,	FBgn0050378,	CG30378,	1	.
CG1909-RA	TATCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGCTCTATTGCGAATGGCGG	69	+	chr4	606279	606348	606279..606348	CG1909-RA,CG1909-RB,	FBgn0039911,	CG1909,	1	.
CG9181-RD	GCCTACGCATACACGAAGCTAGGTTAAGTGCCCCGTAGCCACTAAGTAGTCGTAGATCAGTAGTAGCAA	69	-	chr3L	1344285	1344354	1344285..1344354	CG9181-RA,CG9181-RD,	FBgn0003138,	Ptp61F,	1	.
CG12766-RA	ACCGGAAAGGGTGGAGTATGCCTGCCGAAAGACCTTGAAGAATATTGGCCTGGATTATGTTGACCTCTA	69	-	chr3L	3939562	3939631	3939562..3939631	CG12766-RA,	FBgn0035476,	CG12766,	1	.
CG5473-RA	TGGGACGAGCCTTAGAAATGGATCTGAACTGGGAACGTAAAAGCGATATATAACGATAAATAATTATTA	69	-	chr2R	14528593	14528662	14528593..14528662	CG5473-RA,CG5473-RB,CG5473-RC,CG5473-RD,	FBgn0034371,	SP2637,	1	.
CG12650-RB	CGCCGTTGAAACATTTTTCGATTTTAACCCTCTTATTTTTGTTGTTAGTTATTTGTGTGGTTTGACTGT	69	+	chrX	9312944	9313013	9312944..9313013				0	no match
CG8637-RA	TGGGAGTCATCATGTACGAAATGCTGATGGGCTATCCTCCATTCTGCTCGGACAATCCCCAGGACACC	68	-	chr3L	19825601	19825669	19825601..19825669	CG8637-RA,	FBgn0003744,	trc,	1	.
CG11142-RB	TTGGCTGAGCATCGCAGTAGCTCTTCCTTAGTTTAACTTTTAGTGATCACATTGCCATTCGAAAACAAC	69	-	chr2L	5766032	5766101	5766032..5766101	CG11142-RA,CG11142-RB,	FBgn0031737,	obst-E,	1	.
CG5859-RA	TAACCTCACAGAATTTCCACCTCTCCTTTACCTGGATAAACGGGCGGGTCCCCTGGAACTACCCC	65	+	chr2R	12740367	12740432	12740367..12740432	CG5859-RA,	FBgn0025830,	CG5859,	1	.
CG8809-RA	GCATCTCGTCGTATCCCTTTGAGGCGGATTTCTCCAAGCTAACCCTAACAGACACGGAACAGCGAGAGC	69	+	chr2R	5364055	5364124	5364055..5364124	CG42332-RB,CG42332-RD,CG42332-RE,CG42332-RF,CG42332-RG,	FBgn0259234,	Camta,	1	.
CG8579-RA	ACACCGGCATTGTCTACTAAGAACTGTGTTTTGATAAAGCAATCATATAAAAAGCTATTTAATTTCTTC	69	+	chr2R	4579769	4579838	4579769..4579838	CG8579-RA,	FBgn0001285,	Jon44E,	1	.
CG32918-RA	TCCTTTGGTTTTACCTCGCTCACATTTCAACTGGGACTGCTCATAAGGTGATCCACTATCGCAGCGTGA	69	-	chrX	6188360	6188429	6188360..6188429	CG15891-RA,CG15892-RB,	FBgn0029860,FBgn0029859,	CG15891,CG15892,	2	.
CG12516-RA	AGCGGGCATTCGAGCTAAGGAAGTATAGTGCTTGTATACATCGTGGTTATCACTATGAAACCCTGCCCA	69	-	chr3R	24129442	24129511	24129442..24129511	CG12516-RB,	FBgn0039577,	CG12516,	1	.
CG9245-RA	TTCATGTGCTGCGTCAATGAGCTGTTTTACGTGTGCTTGTACCTCTTGCATTTCACCTACGGCCCGCTG	69	-	chrX	15596297	15596366	15596297..15596366	CG9245-RA,CG9245-RB,	FBgn0030670,	Pis,	1	.
CG13707-RA	GCCCTATCCCCTTATCTTCAAAGGCACAATCGACGAGGCACATGTCGCACAAATACTCAATGCCAGCGA	69	-	chr3L	4838244	4838313	4838244..4838313	CG13707-RB,	FBgn0035578,	CG13707,	1	.
CG18105-RA	GCGGGGGAAATCGCTACGATCGCCAATTCCTCAAGTACAACATCCTGTGAGATGTGGAGTATTCGATTT	69	-	chr2R	20682292	20682361	20682292..20682361	CG18105-RA,	FBgn0028738,	ETH,	1	.
CG8031-RA	TGGATGGACATGAAGACTGACGAGGATGAACACTCCATCGAGATGCATTTACCCTACATTGCCAAAGTG	69	-	chr3R	8834933	8835002	8834933..8835002	CG8031-RA,	FBgn0038110,	CG8031,	1	.
CG5274-RA	AGATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTGTGTCAGGCCTCGC	65	-	chr3L	20419921	20419986	20419921..20419986	CG5274-RB,CG5274-RA,	FBgn0036987,	CG5274,	1	.
CG4886-RA	GTTAAGGAGGACAGTTTCAAGCCTATCTGGGCAGATGACGACTGGTTGCAGAAGCATGCGGGAGC	65	+	chr2R	13433115	13433180	13433115..13433180	CG4886-RA,	FBgn0028382,	cyp33,	1	.
CG7803-RA	GCAAAAAGAGGAGGAACAACTGCGGAAGTGCTCCACTTCATGAGGTCTGGAGGACATAAGCGACGCC	67	+	chrX	2344197	2344264	2344197..2344264	CG7803-RA,CG7803-RB,	FBgn0004050,	z,	1	.
CG13675-RA	GAACTGCGAGGGATCAGAGCAACTCTACCAGAACAACGACGAACTGTATCGCATCCCAGAGCGCC	65	-	chr3L	8154288	8154353	8154288..8154353	CG13675-RC,	FBgn0035845,	CG13675,	1	.
CG9235-RA	TGCTCGCTAGAAGACATATCCTGTCGACTCCAGGACAGCAATCTCCTCAAATTCATCCTGGCCATCGGT	69	+	chr2R	16797302	16797371	16797302..16797371	CG9235-RA,	FBgn0034560,	CG9235,	1	.
CG40085-RA	ACCGGAAGGCATAGGAACAGAACGACAAACCACGGAGATGGAAGGAGCAAATGAGAGGAAGGCAGACAA	69	-	chr2RHet	3213377	3213446	3213377..3213446				0	no match
CG4398-RA	CCGGAGCTACAAATACTCCCCGGAGCTGATAGCCGAACTGAAAGACTTTGAGAAGCTGATTCCCACGGT	69	+	chr2R	12319891	12319960	12319891..12319960	CG4398-RA,	FBgn0034126,	CG4398,	1	.
CG7429-RA	ACGGCTGGTGAAAATAAAATAATGGATGCAACTGCAGCAATCACCGGCAATGTGGACAAGACCCA	65	+	chr2L	8041127	8041192	8041127..8041192	CG7429-RA,	FBgn0031979,	CG7429,	1	.
CG32575-RB	GGCCGTCGATCAGTTGAATGATCCCGGCTTTACCTGTGATCTATGTCAACTTTGTTTCGATTCTCAGGA	69	+	chrX	16330553	16330622	16330553..16330622	CG32575-RB,CG32575-RC,	FBgn0026575,	hang,	1	.
CG1258-RA	GGCACTCGAGAAGAAGGTTCGCATCCACGAGAGCTCCATTGACGTGCTTAACAATACGCTAAGCAAGCA	69	+	chr3L	4244860	4244929	4244860..4244929	CG1258-RA,	FBgn0011692,	pav,	1	.
CG4233-RA	CGATGCCATCTTGGGTGTCACGGAAGCCTTCAAGAAGGACACCAACCCCAAGAAGATCAACTTGGG	66	-	chr2L	1986003	1986069	1986003..1986069	CG4233-RA,CG4233-RB,CG4233-RC,	FBgn0001125,	Got2,	1	.
CG16734-RA	GGAGGACCTGGACAACATTCAGCTGGAGACGTCGCAATTCGACAGCTACCATTCCCTACTTATCCAGGA	69	+	chr3R	5080895	5080964	5080895..5080964	CG16734-RD,	FBgn0037667,	CG16734,	1	.
CG30283-RA	GTTTAGAACCTACGGCTGGGGAAAAACCGAATCGAGATCATCTAGTCGGATGCTCCAGAAAACCTCGCT	69	-	chr2R	17427365	17427434	17427365..17427434	CG30283-RB,	FBgn0260477,	CG30283,	1	.
CG5910-RA	GAAGGTGCACACATCATCCGTGGAATCCTGCTTCACATTCGTCCAGGTCAAGGAGTGCTGCTGTG	65	+	chr3L	20442649	20442714	20442649..20442714	CG5910-RA,CG5910-RB,	FBgn0036993,	CG5910,	1	.
CG12576-RA	CGGACGAGAGCGATTTTGAGATACTCGAATCGGATGACTTTAAGTAAAGATTGGATCAATCGGCGATCG	69	-	chrX	21877544	21877613	21877544..21877613	CG12576-RA,CG12576-RB,	FBgn0031190,	CG12576,	1	.
CG1648-RA	ACAAAAATTCGAATTCCATCCGGATCAAACAAACTTACAAACCCGAAAATTAGTTCTTCGACTCCAACG	69	-	chr2R	5707389	5707458	5707389..5707458	CG1648-RA,	FBgn0033446,	CG1648,	1	.
CG18211-RA	CCGGTGTCTATGCCGATGTTGCTGCCCTCCGCTCCTGGGTGATCAACAACGCCTAATTATTTTTCGAAA	69	.	.	.	.	.	CG18211-RA,	FBgn0010357,	betaTry,	1	.
CG1374-RA	TTGTGGAAAGGAGTTCCCCAAAAACACCGTCTTCGGCAGCAAGTCCTCAGACAAGGTTGCTACCT	65	+	chr2L	21835823	21835888	21835823..21835888	CG1374-RA,CG1374-RB,	FBgn0003866,	tsh,	1	.
CG13232-RA	AGCCGGACGTAATCCCTTGGTTGTGCTGAACTTTGCACTGTTTTGCTACGAAACCGGCAGATTGG	65	+	chr2R	7026296	7026361	7026296..7026361	CG13232-RA,	FBgn0033578,	BBS4,	1	.
CR32314-RA	ACGTGCGCGCTATCATTACTGTTGTGTTTGAGAATAGCTCGAAAGGTTCGATTGAAAGCGGAATCCAGA	69	-	chr3L	1631361	1631430	1631361..1631430	CG17248-RG,CG17248-RI,	FBgn0013342,	n-syb,	1	.
CG11259-RA	GCGAAGCGAAGAATCGAGTCCCACTACCAGTCTTAGCTCTATTACCTCTCCGATGCGGAAGAAGCGCCA	69	-	chr3L	13006345	13006414	13006345..13006414	CG11259-RA,	FBgn0036333,	MICAL-like,	1	.
CG1658-RA	TAAGAAAGTCGCTTAAGCGCTAGTTGGAATGCATCCCCATGTCTACACCTGTCACTGAACCGGGAGCCG	69	+	chr3R	24747960	24748029	24747960..24748029	CG42320-RJ,CG42320-RK,CG42320-RL,CG42320-RQ,CG42320-RR,CG42320-RS,CG42320-RT,CG42320-RP,CG42320-RM,CG42320-RW,CG42320-RX,CG42320-RY,CG42320-RZ,	FBgn0259220,	Doa,	1	.
CG8170-RA	GGGAATCTATCACAGCGTCAGCAAGACCGTGGACTGGGTATCCTACGTCGTCGGACTCACGATGAACAT	69	-	chr2R	4906941	4907010	4906941..4907010	CG8170-RA,CG8170-RB,	FBgn0033365,	CG8170,	1	.
CG1868-RB	GCCAGCTGCACAATCTATCCCACTCGGATCCTATCACGGCTATCAATCTGCCCTACTTGAGCTTGTGCA	69	-	chr2R	5470227	5470296	5470227..5470296	CG1868-RB,CG1868-RA,	FBgn0033427,	CG1868,	1	.
CG5504-RB	AGGACCAGGAGCAGAAAAAAGCGAAGGCAAAGACCAGTGGACGGACAACGAGAAAACCAAAGCGAAAGA	69	+	chr2R	19596233	19596302	19596233..19596302	CG5504-RA,CG5504-RB,CG5504-RC,CG5504-RD,	FBgn0002174,	l(2)tid,l(2)tid,l(2)tid,l(2)tid,	1	.
CG12052-RW	ACGAGGGCTATGTGATTGAAAAAATTCACGGTGATGGGGAGACGGTTAATCAGCCGCAAGAAAAGCTGT	69	-	chr2R	6377863	6377932	6377863..6377932	CG12052-RN,CG12052-RW,	FBgn0005630,	lola,	1	.
CG12116-RA	GGTGACAATCGGAAAGTTGGACAAAGATCACTCGAATGGTGTGCAGCTAATGGAACAGGCATTGATGGA	69	-	chrX	8362515	8362584	8362515..8362584	CG12116-RA,	FBgn0030041,	CG12116,	1	.
CR31931-RA	ACAGATGCTGAAAACCACACTTTATGGATCCTGGCTACTCGGTATATTCCCCTTTACCCTCGACTCCGG	69	-	chr2L	1793158	1793227	1793158..1793227	CG31931-RA,	FBgn0045500,	Gr22b,	1	.
CG9456-RA	TTTCCTGTGGGTCACTTCAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGCCA	69	+	chr2R	2771122	2771191	2771122..2771191	CG9456-RA,CG9456-RB,	FBgn0028988,	Spn1,	1	.
CG3942-RA	GGCGCAAAAATCGCCTATGCATGAACATCGGGCACAAAGGATCGGGAAATACGTACCGGTTAGGATCCG	69	+	chr3R	8081109	8081178	8081109..8081178	CG3942-RA,	FBgn0038008,	CG3942,	1	.
CG13057-RA	TTCTCATCCGCAACTAAGGATCCATTCAACAGATTAACACGATGAACTCGCCAAAGCTATGATAC	65	+	chr3L	16325697	16325762	16325697..16325762	CG13057-RA,	FBgn0040074,	retinin,	1	.
CG9088-RA	ACCGGTATTTACTAAGTTTAGTAAAGTCACTTGAGAGTTTTTGTAGTACATATTTACCAATTATCGCT	68	-	chr2L	5990485	5990553	5990485..5990553	CG9088-RA,CG9088-RB,CG9088-RC,CG9088-RD,CG9088-RE,	FBgn0031759,	lid,	1	.
CG13728-RA	CCCATGTTCCCCATGATGTCTATGCCAATGCCATGGTATAATCCCGGTGTGATGCCCCACCAAAG	65	-	chr3L	17374482	17374547	17374482..17374547	CG13728-RA,	FBgn0036716,	CG13728,	1	.
CG5229-RA	ATGGCAGCCCTTCATCAATATCCAGCCGAGCTCATCTCCATAACCACGTGGTTGGAAGCATGCCA	65	+	chr2L	7421917	7421982	7421917..7421982	CG5229-RA,	FBgn0028387,	chm,	1	.
CG4843-RC	CGTTGGATCTTGGGGTCGCTTTCTGGGCTAAGCAACTTGGTCAGCATCAGTGTTCTCGGGGTTTC	65	+	chr3R	11135926	11135991	11135926..11135991	CG4843-RA,	FBgn0004117,	Tm2,	1	.
CG7121-RA	CCCACAAAGTGGACAGTTTTTGAGCCCTCGTCCAAATATCCCAGCTGGCTTAGGCCTTTGGATGAGC	67	+	chr2L	13440067	13440134	13440067..13440134	CG7121-RA,	FBgn0026760,	Tehao,	1	.
CG6481-RA	TTGAGGAGAAGCAAGTGGATGTTGATGAGCCAAGCTCCGCGATGAACCAGATGTCGATGCAGGAG	65	-	chrX	18415750	18415815	18415750..18415815	CG6481-RA,	FBgn0030936,	CG6481,	1	.
CG13733-RA	CGGCGGGCTCTGATAAGCCACCAAGTTTTGAGGCGAATCCCAGGTCTTCAAAAATTCGATCCCATAACT	69	-	chr3L	17471116	17471185	17471116..17471185	CG13733-RA,	FBgn0036729,	CG13733,	1	.
CG30177-RA	TCGCCATCAGCATGAGAGCCCTATGATGATTCATTCCCCTCGGCATTTACGAGCAGCTGAACTGGACAA	69	+	chr2R	19689654	19689723	19689654..19689723	CG30177-RA,	FBgn0050177,	CG30177,	1	.
CG5549-RA	GGCTGCCTCGGTTAAAGTGTCGCAAACGGATAAAACAGCACCACTTAAGACCACAATATCAGCCAGTGT	69	+	chr2R	19723920	19723989	19723920..19723989	CG5549-RB,	FBgn0034911,	CG5549,	1	.
CG7034-RA	TTTCTGGACGAGTTCGTGTGTCACATGACCAACACGGAGAGGAGCGTATCTCAGACACCATCGGC	65	-	chr3R	16931820	16931885	16931820..16931885	CG7034-RA,	FBgn0038856,	sec15,	1	.
CG12732-RA	CAGGCGCTACAATCGTTACAGCCGCAAGTGCCGCAAACACAAATGTCGCAACCGGTGAACACGGC	65	+	chrX	5252562	5252627	5252562..5252627	CG10706-RN,	FBgn0029761,	SK,	1	.
CG3199-RA	GGCGAAACTTGCCCCAATTTGGACAGGAACCTTAGCCCAAGGGACATAGTATTTGTGGTCGGCAAATCG	69	+	chr3R	9989151	9989220	9989151..9989220	CG3199-RA,	FBgn0038210,	CG3199,	1	.
CG40103-RA	CATCAAACCAACTCAACAACTCAACCTACTATTGACGAGCCTAAACAAATGATGAAACAATTAATAGCT	69	-	chr2RHet	2842382	2842451	2842382..2842451				0	no match
CG32697-RA	GGGCCAATCTGACCAAGAATCGCTACACAGACGTCCTCTGCTACGATCACAGTCGAGTTGTTCTGGCAC	69	-	chrX	9524082	9524151	9524082..9524151	CG32697-RD,CG32697-RB,CG32697-RC,CG32697-RA,CG32697-RE,CG32697-RF,CG32697-RG,CG32697-RH,	FBgn0028341,	l(1)G0232,l(1)G0232,l(1)G0232,l(1)G0232,l(1)G0232,l(1)G0232,l(1)G0232,l(1)G0232,	1	.
CG5379-RA	TGTTCGGTGAGGTCCTTCCCATTTCGCACCAGGATCTGCCCAAATTCTGGAACCTCCGAGATGAG	65	-	chr3R	18212448	18212513	18212448..18212513	CG5379-RA,	FBgn0038956,	CG5379,	1	.
CG11290-RA	GGCACTCCATCGAACCCGATGTACCCCACGTATTCCCCCTACTTACCTCTCAACGGTTCTATTCGCAGA	69	+	chr2R	19994390	19994459	19994390..19994459	CG11290-RA,	FBgn0034975,	enok,	1	.
CG8068-RF	AGGCGCCCAAACGTCGGCTAAGCAAAGTTAATAGAGTATTTTTCGGTTTTATACCACCATTTGTCCTAA	69	+	chr2R	5007437	5007506	5007437..5007506	CG8068-RH,CG8068-RD,CG8068-RC,CG8068-RF,CG8068-RE,CG8068-RA,	FBgn0003612,	Su(var)2-10,Su(var)2-10,Su(var)2-10,Su(var)2-10,Su(var)2-10,Su(var)2-10,	1	.
CG7356-RA	ACCGTGGACGTGTTCATCGACGCGAACAACAAGAAGTTGGATGCAGAGACCACGGACTCGATCTG	65	+	chr2L	8025469	8025534	8025469..8025534	CG7356-RA,CG7356-RB,	FBgn0031975,	Tg,	1	.
CG13822-RA	TGCCCACCATTGTGTTCGAGAATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAA	69	+	chr3R	19503863	19504005	19503863..19503886,19503959..19504005	CG13822-RA,	FBgn0039098,	CG13822,	1	.
CG32797-RA	GTCGTTACCTCACTGATGCTGGAGGCTCAGTGTCTGGAGCAGGATCTGGATCTACGGCTGGATCTGAAT	69	-	chrX	2319152	2319221	2319152..2319221	CG32797-RA,	FBgn0052797,	CG32797,	1	.
CG12590-RA	TTGAGAGCCTACTTCTGTGCGACACGATGGGTACCGGCACCACTTACGACATTCGGAGCATTAGG	65	+	chr3R	985677	985742	985677..985742	CG12590-RA,	FBgn0037294,	CG12590,	1	.
CG18609-RA	CGAGGGCCATGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACAAGGTCCTCGA	69	-	chr2R	14630615	14630684	14630615..14630684	CG18609-RA,	FBgn0034382,	CG18609,	1	.
CG12645-RA	GACCTACTATGATGCAATGCAAACGTTTACGATTCAGAATAATTTGGATTATTCCAACGATCGGC	65	+	chrX	10047742	10047807	10047742..10047807	CG12645-RA,CG12645-RB,	FBgn0030181,	CG12645,	1	.
CG14062-RA	GGAGACCATCGAGCGATTCGTTCGTAATTCGGTGACCGGAAACAACTTTGTGAATGTGCGCACCG	65	-	chr3R	24467717	24467782	24467717..24467782	CG14062-RB,	FBgn0039592,	CG14062,	1	.
CG13663-RA	AGGAGAAAGGAAACGGTAGACAACTTCAAGGACAAACTACGGAGATTCTGGATGTTGGGAACCGGGGCT	69	-	chr3R	21040746	21040815	21040746..21040815	CG13663-RA,	FBgn0039291,	CG13663,	1	.
CG8481-RA	GCAGCCCGTTCAATGTGGTTCCCATTCACAACTACCCGGAGCTTATGAAAGACACTTGCGCCCTAATCA	69	+	chr3R	5594669	5594738	5594669..5594738	CG8481-RA,CG8481-RB,	FBgn0037747,	CG8481,	1	.
CG6769-RA	ACGCCATTCCAGAGTGCCAACGAAAACGAGAGTGCCAGTCAAGCGATCATCGAATCCACTCAGCG	65	+	chrX	17755126	17755191	17755126..17755191	CG6769-RA,	FBgn0030878,	CG6769,	1	.
CG10043-RA	TTTGCAGATCGCATGCATAATTTGAACTTCGGGCAAATTTAACAACATCGAACATCTGCTTATAGCCCA	69	+	chr2L	20364829	20364898	20364829..20364898	CG10043-RA,CG10043-RB,CG10043-RC,CG10043-RD,	FBgn0015803,	rtGEF,	1	.
CG10092-RA	CCACCAGTCAAGCGCTGAAAAGATTGCCTGTGAAACAAGAGTCCAGCCTAGAGAAGCAACTCCAACGCC	69	+	chr3R	3714822	3714891	3714822..3714891	CG10092-RA,	FBgn0037526,	CG10092,	1	.
CG5285-RA	ATGCAGACCTTCTCCCAGCAGTGTTTCGTCCACAATTTCTGTCCGCTAGCTTTCTTTGGCGCAGAT	66	+	chr3R	12976918	12976984	12976918..12976984	CG5285-RA,	FBgn0038490,	CG5285,	1	.
CG1112-RA	GCTGCCACGGGTAATCCCTACAGCGAGAAGATCAACGGTATGGACACTCTGACCATTGATCCAGTTCGC	69	-	chr3R	3345598	3345667	3345598..3345667	CG1112-RA,	FBgn0015575,	alpha-Est7,	1	.
CG31856-RA	GCTTCAATGGGCTGTCAAACAATTTATCAAGCCTGAATTTGAATCCGCATTAGCTGAGCGCTTTTGGCG	69	-	chr2L	13073467	13073536	13073467..13073536				0	no match
CG9333-RA	GCCAGCGAAACAAATATTCTGGTGGGAGTACACGACTCGTGCTACAGCATCTGGTATTGTCCCGGGGAA	69	-	chr2L	20833669	20833738	20833669..20833738	CG9333-RB,	FBgn0032891,	Oseg5,	1	.
CG12449-RB	CCGAGACGTTCTGCAGCTGGACTCCAAAGTTAAAGAACTGGCCAAAGACCTATACCAACACAAGTCGCT	69	+	chr3RHet	2480905	2480974	2480905..2480974	CG12449-RJ,CG12449-RK,CG12449-RL,CG12449-RM,CG12449-RN,CG12449-RA,CG12449-RF,CG12449-RD,CG12449-RH,	FBgn0027341,	Gfat1,	1	.
CG5094-RA	GCAGTGCAGCAGAGTTTCGTGCGTAGCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCG	66	+	chr2L	17473596	17473662	17473596..17473662	CG5094-RA,CG5094-RB,	FBgn0032640,	Sgt,	1	.
CG5687-RA	GGGCTGCTTCTACAGTGGCAATCCCATCCAGGTCTTTCAGACTGCTTCCGATCACAATCGCTTGGAG	67	-	chr3L	1935221	1935288	1935221..1935288	CG5687-RA,	FBgn0035293,	CG5687,	1	.
CG6658-RA	AAGCATTAGGTGGGCTCAAACAGCGTGTTCTCTGGAAATTTGAGCTGGATAACCTGCCCAACAAACCGG	69	-	chr3R	6978250	6978319	6978250..6978319	CG6658-RA,	FBgn0040251,	Ugt86Di,	1	.
CG6649-RA	AGGAACTTAAGGAGACCATCGAGATATTGCTCAAGGAGCCGAGATTTGCGCAGATTGCTAGGCAGATGT	69	-	chr3R	6994560	6994629	6994560..6994629	CG6649-RA,	FBgn0026314,	Ugt35b,	1	.
CG18188-RA	GGGTCCGTTGAGAGCTGACGCGAAAAAAATGAACAACGAACCCTATATTAAGTGTTACAGCTGCTCCGA	69	-	chr2R	7753154	7753223	7753154..7753223	CG18188-RA,	FBgn0033659,	Damm,	1	.
CG16721-RA	CGCACCCGTAACCACCAAGTAGAAATGAGTACTCCAGATGCAAATCCCCCTGCAAAAAAGCCAGTGGGA	69	+	chrX	5777031	5777100	5777031..5777100	CG16721-RA,	FBgn0029820,	CG16721,	1	.
CG12700-RA	TCTCTGAATCACTCGTTTGTAGTAGTTTGGCAAATAGAAAGGCAAGGCAAACCGAAAATGGATGCTCCC	69	+	chrX	19706776	19706845	19706776..19706845	CG12700-RA,	FBgn0026174,	skpD,	1	.
CG32556-RA	CGGCAGCAACGATCCTAGTCCCATTTACATCGAGAAGCTCACAAGGAACAACTATCAGCAGCGTCAGGA	69	-	chrX	17567698	17567767	17567698..17567767	CG32556-RB,CG32556-RA,	FBgn0263258,	chas,	1	.
CG5140-RA	GCTTGCTCAAGAACGAGGCTGATCCACATGTCCTAGCCAACTGGGTGTCCACTCTCAAGAGGGAG	65	+	chr2R	14068875	14068940	14068875..14068940	CG5140-RA,	FBgn0034314,	nopo,	1	.
CG9962-RA	GCAGAAGGCGGAGATGATCTTGGAAATGAAGCTGTCCACCTTGCCGAATAGCCTGTGTGCTGGATATCC	69	-	chr2L	2646893	2646962	2646893..2646962	CG9962-RA,	FBgn0031441,	CG9962,	1	.
CG12369-RA	CCAGCCCAGCCGTAAACGATGCATTTCACCTTGATCCCGTCCGTTTTGCTTTCTGATCTGGCACTGTAT	69	+	chr2R	8352714	8352783	8352714..8352783	CG12369-RB,CG12369-RA,	FBgn0010238,	Lac,	1	.
CG4447-RA	GCGCGAGATCCTCAATTTCGATGGCCTGAATAGCCAGATGCAGAAGTCCGTGATGCAGATGAAGGAGGA	69	+	chr3L	9357728	9357797	9357728..9357797	CG4447-RA,	FBgn0035980,	CG4447,	1	.
CG8129-RA	CGCCAAAAATTTCGTTGATAAATTTGGCTGCACATAAAAGTCAAAGATCCGATAAGATAGGGTTTAATT	69	+	chr3R	5191932	5192001	5191932..5192001	CG8129-RA,	FBgn0037684,	CG8129,	1	.
CR17875-RA	TGTCTGCATTTACGCTACTTTCGTACCTTTCAATTGATTTGATAGAATGCAAACGTAGAGCCCTATGTA	69	-	chr3R	8222099	8222168	8222099..8222168	CR17875-RA,	FBgn0038034,	Cyp9f3Psi,	1	.
CG9907-RA	CTGTTCCTGGTCATGTTCATCTTTGCCATTTTCGGCATGTCGTTCTTCATGCACGTGAAGGAGAAGAG	68	-	chrX	16360588	16360656	16360588..16360656	CG9907-RA,CG9907-RB,CG9907-RC,CG9907-RD,CG9907-RE,CG9907-RF,CG9907-RG,CG9907-RH,CG9907-RI,CG9907-RJ,CG9907-RK,CG9907-RL,CG9907-RM,CG9907-RN,CG9907-RO,CG9907-RP,CG9907-RQ,CG9907-RR,CG9907-RS,CG9907-RT,CG9907-RU,CG9907-RV,CG9907-RW,CG9907-RX,CG9907-RY,CG9907-RZ,CG9907-RA,CG9907-RB,CG9907-RC,CG9907-RD,CG9907-RE,CG9907-RF,CG9907-RG,CG9907-RH,CG9907-RI,CG9907-RJ,CG9907-RK,CG9907-RL,CG9907-RM,CG9907-RN,CG9907-RO,CG9907-RP,CG9907-RQ,CG9907-RR,CG9907-RS,CG9907-RT,CG9907-RU,CG9907-RV,CG9907-RW,CG9907-RX,CG9907-RY,CG9907-RZ,CG9907-RA,CG9907-RB,CG9907-RC,CG9907-RD,CG9907-RE,	FBgn0260993,	para,	1	.
CG8836-RA	CGCGATCTCTACAATCTACGACGTTTCTACGATGGCTTCTACAAGAAGTACAATCCCTACATCGCCGCT	69	-	chr2R	8278906	8278975	8278906..8278975	CG8836-RA,	FBgn0033726,	Cpr49Ad,	1	.
CG5439-RA	GCGGAGCTTAGTCTTCAAAATCGCCTGCTTATCCGAAGGCTAACCAAACAGTTTGAAGAGACCGGCATC	69	+	chr2L	13178363	13178432	13178363..13178432	CG5439-RA,	FBgn0032476,	CG5439,	1	.
CG12498-RA	AATCGCCAACTGAAAATCCATCGAGGGGAAAAGCGGATACCGTAGACGAGGAGGAAGATCCGGGG	65	+	chrX	2704681	2704746	2704681..2704746	CG12498-RA,	FBgn0040356,	CG12498,	1	.
CG30483-RA	CCCAAGGCGAACCACCATAGGTTGCACTAAACTAAGCCTGGGGAATCAAATCAACCGTTTGCCAAATCG	69	-	chr2R	9949791	9949860	9949791..9949860	CG30483-RA,CG30483-RB,	FBgn0040752,	Prosap,	1	.
CG5087-RA	GCCACCATTCTCGATTCGTTGCGTGGAGGTTAGTGATGACGAGGATACAGGCGACACAATCGGAAGTGT	69	+	chr3L	8994994	8995063	8994994..8995063	CG5087-RA,	FBgn0035953,	CG5087,	1	.
CG8416-RA	CCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGATCAGTTCCCCGAGGTCTATGTGCCCACCG	69	+	chr2R	11991166	11991235	11991166..11991235	CG8416-RB,CG8416-RC,CG8416-RD,CG8416-RE,CG8416-RF,CG8416-RG,CG8416-RA,	FBgn0014020,	Rho1,	1	.
CG14418-RA	GCTGCAGGTCACCGGTTTCATCACCAAATCCGGCAACATCTACGAGATTGAGGACAAACGGGGCT	65	-	chrX	2777293	2777358	2777293..2777358	CG14418-RA,	FBgn0040354,	CG14418,	1	.
CG13783-RA	GGCGATGCGAGAGAAGAGCCGGAATACCCCTCTCATAAGGAACATTGAGAATGAGGTGAGTCTGGCATT	69	-	chr2L	7155472	7155541	7155472..7155541				0	no match
CG5076-RA	CCCTCCAGCAAGATCTATACCCAACATAAGTGGAGTTGCGGGCACAAGATCAGGAGTTGCAGTCGAGCA	69	+	chr2R	13811766	13811835	13811766..13811835	CG5076-RA,	FBgn0011589,	elk,	1	.
CG18255-RE	GCCCACCTCAGTCTTCTTTCCTGACCCTATGTGTTCACTCCAACCAATACAATATATCGTTCTGACTAC	69	-	chr2R	11847392	11847461	11847392..11847461	CG18255-RD,CG18255-RH,CG18255-RP,	FBgn0013988,	Strn-Mlck,	1	.
CG32736-RB	AGGCTGTTCACCTTTACTATAAGCCTCTGGAGGACTTGCGCGTCTACATCGAACAGGAGCAACACAGCA	69	+	chrX	6906017	6906086	6906017..6906086	CG42308-RA,CG42308-RB,CG32736-RA,CG32736-RB,	FBgn0259204,FBgn0052736,	CG42308,CG32736,	2	.
CG7207-RA	AGTACGCCAAGCAGGAGTCAAAGAATGGAAAATGCGTACGGATCTTCCTGACCGTCATCCTGGCCTG	67	-	chr3L	8276461	8276528	8276461..8276528	CG7207-RA,	FBgn0027569,	cert,	1	.
CG18809-RA	AGCACAAATCGCCACTAAAAGCTAAAAGGCTAACAAGCTGAATCGCACTGATTCGCACGTAGCCAGCCA	69	-	chrX	19637620	19637689	19637620..19637689	CG18809-RA,CG18809-RB,	FBgn0042132,	CG18809,	1	.
CG18747-RA	CGTCCTTTGAGGGTCGCCATGGATGCATCCGCTATATAGTGAAAGTCCTGCTGATCAGACCGTGGAAGT	69	-	chr3R	3608191	3608260	3608191..3608260	CG18747-RB,	FBgn0042104,	CG18747,	1	.
CG12020-RA	CATTCTGTGAACACTTCTGCCAGTTGTTATACGCTTCGACTCCGAATAGAAACAATGAACCGGCCGGAG	69	+	chr3L	1797310	1797379	1797310..1797379	CG12020-RA,	FBgn0035273,	CG12020,	1	.
CG32702-RA	TGCTGAGGGTGCAGTTCGTCAACTTTGATCTCCACGGACCGAATCAAAATGGTAGCTGCGTGGATGACT	69	-	chrX	9453874	9453943	9453874..9453943	CG32702-RB,	FBgn0052702,	CG32702,	1	.
CG7811-RA	TCCGTACTTCATCAATCAGTTGTACTCGGGTGTGGATCCATACGCGCTGGTAGGTCAATGGCTCACCG	68	+	chr2L	13821880	13821948	13821880..13821948	CG7811-RA,	FBgn0000153,	b,	1	.
CG3907-RA	TCTCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGATGATATTGCTGCGCTGA	69	-	chr2R	19908387	19908456	19908387..19908456	CG3907-RB,CG3907-RA,	FBgn0034958,	CG3907,	1	.
CG12690-RA	CACGAGGGACACAAGCAAAGTGAACTTTTCCAGCGTATCAGTGACAAGGTTTATATCAAAAGAGAACAT	69	-	chrX	7579225	7579294	7579225..7579294	CG12690-RA,CG12690-RB,	FBgn0029504,	CHES-1-like,	1	.
CG1683-RA	GCCCCACATGGTGGTCGGTCCCTCATTTCAGATTGTGTTCACTTTCGCAGTGGTTGAGAAAATACAAAT	69	-	chrX	10673000	10673069	10673000..10673069	CG1683-RA,CG1683-RB,	FBgn0025111,	Ant2,	1	.
CG16783-RA	CCGGAACTTTGTCAATGCTCCGGGAGACTCCAATGTGTACGAGAGCTCTGTGTACTCATGCCTCTTGCG	69	+	chr2R	19838315	19838384	19838315..19838384	CG16783-RA,	FBgn0034937,	fzr2,	1	.
CG32788-RB	ACCGATATGAAATCTGCCTACAGCCAGACAAAAAAAACCTTAAAGAGAAAGATCAGAAGAGGAACAGAA	69	.	.	.	.	.	CG34412-RF,CG32788-RB,	FBgn0086899,FBgn0021738,	tlk,Crg-1,	2	.
CG10563-RA	AGACACCACCAAGACACTGCTCATCCTTGGGAGACAGCTGTCAACATTTCCCCTCTTGGCACAACTCTT	69	+	chr2L	19129044	19129113	19129044..19129113	CG10563-RA,	FBgn0086445,	l(2)37Cd,	1	.
CG9248-RA	TGGGCGTGCTAGTCCAGAACTGTCCAGAACTGACCCATGATGTGGCCAAGATCTTTGGAGAGTACTGG	68	+	chr2L	21159806	21159874	21159806..21159874	CG9248-RB,CG9248-RA,	FBgn0032923,	CG9248,	1	.
CG14333-RA	GAGGCCTTTGCGAATCATTTCAGCAGCCATCTGGGACGCCACCTCTTCTACTGGGCCATCGAATC	65	+	chr3R	13210379	13210444	13210379..13210444	CG43226-RB,CG43226-RC,	FBgn0262871,	lute,	1	.
CG9470-RA	TGCATCAGTTGTGGTCAGCAGCAAAATCAAGTGAATCATCTCAGTGCAACTAAAGGCCTAAATAGCCCA	69	-	chr3R	5610023	5610092	5610023..5610092	CG9470-RA,	FBgn0002868,	MtnA,	1	.
CG16827-RA	TGCTATCTGGAAAATCATTGTGTCCGTCATCGTTGGCATTTTGGTGTTTTCGGCCGCAACATATGCCCT	69	+	chr2R	11149914	11149983	11149914..11149983	CG16827-RA,	FBgn0034005,	alphaPS4,	1	.
CG6508-RA	TGGGGTGGAATCGATCGGAGCATCTACAGGGGTTGCATCAACTACGTTCCAGTATCGATGCCTGC	65	+	chr2L	10819809	10819874	10819809..10819874	CG6508-RA,	FBgn0032303,	CG6508,	1	.
CG4337-RA	GGCAACCAGAAGACTAGCACCAGTATCATAGCCGACGATGTGTTGTTTTTCCGTGATGCCAACAACTAA	69	-	chr3R	12030035	12030104	12030035..12030104	CG4337-RA,CG4337-RB,	FBgn0010438,	mtSSB,	1	.
CG31953-RA	AGTCCATTGCAACTGGTGCTCTTTGCTTTCCAGACTGGCGAGGACACCTTTCCTTTGGGTAACAATCGT	69	.	.	.	.	.	CR31953-RA,	FBgn0051953,	CR31953,	1	.
CG32823-RB	GGTCGCTAAAGCTACCCATTTCAAGTTGCCAGTTCTCTGTCGTCTCCGGAATTAATTCAAATAAGCCGC	69	.	.	.	.	.	CG32823-RB,	FBgn0052823,	Sdic3,	1	.
CG6563-RB	GCCCAGTCGCTGTACACTCAGTCTCTTGGGCTATGGAGACGACACGCTTTATGCCGATGAAGTGGAATT	69	-	chr3R	11053817	11053886	11053817..11053886	CG6563-RA,CG6563-RB,	FBgn0038306,	Art3,	1	.
CG11979-RA	ATTGGTGTGCTGATCCTGGACTTATGAATTATTTTAAGAAACCTATGATTTAAGGAAAAGGCAGCGAGT	69	-	chr2R	6785780	6785849	6785780..6785849	CG11979-RA,	FBgn0033571,	Rpb5,	1	.
CG13650-RA	AGCGCCGTCTTTAAAAGGAGCTGCCCTAGTGAAACTATCGGCTTTGAAGATCCAATCGCAGACCTGGGA	69	-	chr3R	20935966	20936035	20935966..20936035	CG13650-RB,	FBgn0039277,	CG13650,	1	.
CG6793-RA	AGGCCAAATGGAGAAAGTCGAAGGAACAGGCCAAGAACGCCCGTTTAGCTGTGCAAAGAGAGGAG	65	+	chr3L	12036612	12036677	12036612..12036677	CG6793-RA,	FBgn0036242,	CG6793,	1	.
CG32625-RA	TGCCGCTTTGTGCCAAGAAATTTCCATCGGACGAATTAGCTCGCTGTCCATATAACAGAACCCATATGT	69	-	chrX	13650636	13650705	13650636..13650705	CG32625-RA,	FBgn0052625,	CG32625,	1	.
CG5558-RB	CCAGCGAAAAGGCAGGTTATCACACCGATTACCAGTATTAGCCGGCTGAGATGGGCAAGAAGAACAGGA	69	-	chr3R	14987453	14987522	14987453..14987522	CG5558-RB,	FBgn0259705,	CG42359,	1	.
CG14137-RA	CTTTCCCAGACCCGGAGACATTGCCACTCCCACTCGTACTCCCGAACATATCCCAAACCCAGAAG	65	-	chr3L	11592744	11592809	11592744..11592809	CG14137-RA,	FBgn0036178,	CG14137,	1	.
CG9429-RA	AAGACATCCGCTGCAAAGATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCCGACAACACGT	69	-	chr3R	5455551	5455620	5455551..5455620	CG9429-RA,	FBgn0005585,	Crc,	1	.
CG8494-RA	GGTGAACGGTGTGCACGAGAAGTCACGTGACAAGGGAAAATTGCGGAATAGTTCAAAAAGCGGCAGCA	68	+	chr2R	10130609	10130677	10130609..10130677	CG8494-RA,	FBgn0033916,	CG8494,	1	.
CG13164-RC	TCATCAAGTTGTTAAAGGAGCAGAATTCGCGGGTATCATTGTTGCGAGCCAATCAGGACGAGCGG	65	-	chr2R	8191110	8191175	8191110..8191175	CG13164-RC,CG13164-RE,CG13164-RG,CG13164-RA,	FBgn0061197,	SIP2,	1	.
CG8085-RC	CGCTGCAAACACTAGAGCTAGGCCTTCCATGGGTGCAGCCAATAGCAATCACCAAGCTTCGAGAGAATG	69	-	chr2R	9872929	9872998	9872929..9872998	CG8085-RC,CG8085-RD,	FBgn0020620,	RN-tre,	1	.
CG30099-RA	ACCAGGGCCAACACCTACGTTCGAAAGTTCACGAATGGATCGCAGCAAAGTCGAGATATCAGCATGCCA	69	-	chr2R	12176318	12176387	12176318..12176387	CG30099-RA,	FBgn0050099,	CG30099,	1	.
CG10126-RA	TCTGGAGAAAAGTCTGAGGATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC	69	-	chr3R	8681558	8681627	8681558..8681627	CG10126-RA,CG10126-RB,	FBgn0038088,	CG10126,	1	.
CG3592-RA	TGAGCCGCACTTTAATTCCAAACATGGATTGTGTGGCCTTTTGGGATTCCTGCTTATCGCTGGGGC	66	+	chrX	2829585	2829651	2829585..2829651	CG3592-RA,	FBgn0029642,	CG3592,	1	.
CG32016-RC	ACCAATCAATTGGCGCAATGGTTTTCCCCTGAGCTTCTTGCAAAAGCCTCTGCTGGAAAACTGCCACTT	69	-	chr4	972542	972611	972542..972611	CG32016-RE,CG32016-RB,CG32016-RA,CG32016-RF,CG32016-RD,CG32016-RC,	FBgn0052016,	CG32016,	1	.
CG6544-RC	CTCAAAGCATCCAAATCTAAAAATCTCAACATGGTTTACGAAAGTGGATTTACGACCCGCAGAACCT	67	-	chr3R	6602936	6603003	6602936..6603003	CG6544-RB,CG6544-RA,CG6544-RC,CG6544-RD,CG6544-RE,CG6544-RF,CG6544-RG,	FBgn0020439,	fau,	1	.
CG11306-RA	AACAAGAAGTACGTGGCGAGGAACCCCTTTCTCACCTGGACTAAGCTTGCCTACTACCGCCTCTTCTCA	69	+	chr3L	21620428	21620497	21620428..21620497	CG11306-RA,	FBgn0037108,	CG11306,	1	.
CG10653-RA	AAGCAGTTACCCAGAGCACGTCTCTGCAATGCAAGGTGACTCAGCTGGAAACCAATTTATCAGCGCGTG	69	-	chr2L	19031385	19031454	19031385..19031454	CG10653-RA,	FBgn0001202,	hk,	1	.
CG5124-RA	GTCCCGAGGAAGGTATTGGTGTCAGGCTCTTGAACCTGCACGATCAGTTGGAGAACACAGAGGCCAAAT	69	+	chr2R	14039972	14040041	14039972..14040041	CG5124-RA,	FBgn0000057,	adp,	1	.
CG10081-RA	TCCGTTGCTGGAGTCCAATGTGGATCTCACTGGTCTGGTCAACATGACATCCGATTGTGCCAAGTACAT	69	+	chr2R	15276138	15276207	15276138..15276207	CG10081-RA,	FBgn0034441,	CG10081,	1	.
CG30130-RA	CACCTTGTCGAACCTAATTTGGCTCCACTGAAGTCCGTGCATTTCGGTCGAAACAAAGCGATGGGAGGA	69	-	chr2R	15401579	15401648	15401579..15401648				0	no match
CG9282-RA	TAGTGATGTGCTAAAGTTAGTCCAGGATTTAAGGAACCACTCGTGAATTGAAAATTAAACAAACGCCGC	69	-	chr2L	13394329	13394398	13394329..13394398	CG9282-RA,	FBgn0032518,	RpL24,	1	.
CG8852-RA	ACTCCTGTAAGTGGAGGTACCTCGATTTGCAATTGCACTGGTCACAGAGAATCCACCTGCTCGAGGACC	69	+	chr2L	3526936	3527005	3526936..3527005	CG8852-RA,	FBgn0031548,	CG8852,	1	.
CG10052-RA	AATTTCGTGTTGTAAGTACATATTTCTGAGGCAGTTTCTTAGATGGTAAACTCAACGTGTGCAAAGTGT	69	+	chr2R	16824369	16824438	16824369..16824438	CG10052-RA,	FBgn0020617,	Rx,	1	.
CG12632-RB	TCCGAGGAGGAAGTACTCTTCAGCGACGAGTTCAACCTTAACTACTTTGGCTATAATCCGGGTAGCGAT	69	+	chrX	3704461	3704530	3704461..3704530	CG12632-RB,	FBgn0061173,	fd3F,	1	.
CG30090-RA	CCAGCGCTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGAACCAAATTTGCGC	69	+	chr2R	11578120	11578189	11578120..11578189	CG30090-RA,	FBgn0050090,	CG30090,	1	.
CG7199-RD	CAATGAGGCGGTCTTTGAACAGGATCTTCTCACCGATGTGCAGTGTGCCTTTCATGTGCAACCGC	65	-	chr3L	21488058	21488123	21488058..21488123	CG7199-RC,CG7199-RA,CG7199-RD,CG7199-RB,CG7199-RE,CG7199-RF,	FBgn0015239,	Hr78,	1	.
CG5468-RA	CCAGCGATTTTTGACTGATATTAAATCGTAGTTTTTGTTGACTAATGCTTAAATAAATTCAATTCTTAA	69	+	chr3R	22445866	22445935	22445866..22445935	CG5468-RA,	FBgn0039434,	TwdlM,	1	.
CG11175-RA	CGCGATGTGGCTCTTTGAGTCCGTTTTTTTGGTTCTGGAAACCGGATCCCAATCGATCATCAGTCAGCG	69	-	chr2R	16516249	16516318	16516249..16516318	CG11175-RA,CG11175-RB,	FBgn0034530,	Rcd6,	1	.
CG8520-RA	AGCGCACGAACTTTCTGCCCTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA	69	+	chr2R	8311986	8312055	8311986..8312055	CG8520-RA,CG8520-RB,	FBgn0033734,	CG8520,	1	.
CG8464-RA	ACGCTCACACCGGATATTCTGTTCGAGCTCAAGTCACGAAGCCAAAACATGCCCAGCAACTTAACGCAC	69	-	chr3R	10336001	10336070	10336001..10336070	CG8464-RA,	FBgn0038233,	HtrA2,	1	.
CG9983-RA	AGCAGTGTGTGAGCTAAACAGAAGAAACACAGCAAGTGGCAGTACACGTACACAGAAGGTGACCAGGAT	69	+	chr3R	24430052	24430121	24430052..24430121	CG9983-RD,CG9983-RA,CG9983-RE,CG9983-RC,	FBgn0001215,	Hrb98DE,	1	.
CG13948-RA	AATCTGGACGGGTATGCAAACATCAACCGCGAGCTGATCACGACCAACATCTCGTTCATGGCCAC	65	+	chr2L	782692	782757	782692..782757	CG13948-RA,	FBgn0041250,	Gr21a,	1	.
CG3954-RB	AGTAACTGAGGCAGTAAGCACGTAACGATAATGATACAAAAAGCGTTGATTGTGATTCGAGTGACAGCG	69	+	chrX	2006738	2006807	2006738..2006807	CG3954-RA,CG3954-RB,CG3954-RC,	FBgn0000382,	csw,	1	.
CG16765-RB	GCGACGTACACGAACTGTCTCTGTCACTGATAGCGATCGATAGCTGTACCTCCATGTGTGTGCATGAGT	69	+	chr3R	5257795	5257864	5257795..5257864	CG8144-RF,CG8144-RG,CG8144-RH,CG8144-RK,CG16765-RN,CG16765-RP,CG16765-RM,CG16765-RO,	FBgn0261552,	ps,	1	.
CG7061-RB	TCAGCTTGGAATCGGGCGTCCTCTTAAGTCTCATGTCGTGGCAGTACATGGTCCAGTGGAGCAAG	65	-	chr2L	12059920	12059985	12059920..12059985	CG7061-RA,	FBgn0027505,	rab3-GAP,	1	.
CG30490-RA	GCACAGCATCAACAAGCTTACTGGCTGCTAAAAATCGTCATTACGCTGAGATCATTATTCCCATCGGCG	69	-	chr2R	7003902	7003971	7003902..7003971				0	no match
CG12026-RA	GCCAAATACTCGGTCACCTCTTGCATCAGAGTTCCCTGACTCAAAAGCATTACTCTATCGCCACGAGGT	69	+	chr3L	1889520	1889589	1889520..1889589	CG12026-RA,	FBgn0262624,	Tmhs,	1	.
CG13648-RA	AGATGAAGACCAGGCTCCCGTTACTGTGTCTCCTCAGGATGCTGAAAAGACTCCAGTTTCCCCGG	65	+	chr3R	20845300	20845365	20845300..20845365	CG13648-RC,CG13648-RD,	FBgn0039257,	tnc,	1	.
CG1812-RA	GCTAGCGTAGACCTATGTACATGCGAGATTTTGTGATGACTGCAGTAACGAAAATGTGCCAAGCACGGA	69	+	chrX	20385942	20386011	20385942..20386011	CG1812-RA,CG1812-RB,	FBgn0031119,	CG1812,	1	.
CG12897-RA	ACCTGCCGATGAGTGCTTAATTAATGTGACGGACTTTAGTGATATACAAATAAGTGAGGGGACTG	65	-	chr2R	6299966	6300031	6299966..6300031	CG42732-RG,CG42732-RH,	FBgn0261698,	CG42732,	1	.
CG14206-RB	AAATGTTCAACTGAAGATCCATACCCTTAACAATAGAAGAAACCAACATCTGAAAAATGTGTGTG	65	+	chrX	19493001	19493066	19493001..19493066	CG14206-RB,CG14206-RC,CG14206-RD,	FBgn0261593,	RpS10b,	1	.
CG12109-RB	GGTGCGCCTTACCCACGGCAATCGGAACTCGAAGACGTTCCTGATCAACGAATATTTAGAGTACCTGAA	69	-	chrX	8497127	8497196	8497127..8497196	CG12109-RB,	FBgn0030054,	Caf1-180,	1	.
CG13066-RA	CTACACCCCTGCCTACGCCCCCTACGTGGCCCCCTATGCCAGTAGCTACAGTGCCCACAGTGTGG	65	+	chr3L	16266417	16266482	16266417..16266482	CG13066-RB,	FBgn0040797,	CG13066,	1	.
CG1252-RA	TAGATCCTGGCTAAAATCGACGCTGTACATATATAGAATTGTTGGCTTTATTATAACTGTTCATTTATT	69	-	chr3R	2527733	2527802	2527733..2527802	CG1252-RA,	FBgn0004782,	Ccp84Ab,	1	.
CG9730-RA	ACATGCGCATCAACTTCCAGAGATCTCCGCACACCATGGTCCGGATCAATTCAATTGAACTGGCTCGT	68	-	chr3L	19247448	19247516	19247448..19247516	CG9730-RA,	FBgn0036853,	mRpL21,	1	.
CG14240-RA	AGGCTGCTCTCCAGAGGGCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCG	65	-	chr3R	22446764	22446829	22446764..22446829	CG14240-RA,	FBgn0039435,	TwdlP,	1	.
CG8534-RA	AGAAAGCCCTACGATCTCCGCAGAGTCATCAGGGCATACAACATTATGCAGATTGTCTACAACGGCGTT	69	+	chr3R	5638670	5638739	5638670..5638739	CG8534-RA,	FBgn0037761,	CG8534,	1	.
CG4495-RA	TGAAGAGGGTTAAGAGGAGGTTTAGGGACCATGGCAAAGGCATCTCCAAACAGGACTATCTGGATTTCT	69	+	chr2L	7184837	7184906	7184837..7184906	CG4495-RA,CG4495-RB,	FBgn0031893,	CG4495,	1	.
CG5731-RA	GTAGCACCTTCGGTAAATGCCTCGACAATGGGCTTGCCAAAACTCCTCCAATGGGTTGGCTTTCC	65	-	chr2L	10208700	10208765	10208700..10208765	CG5731-RA,	FBgn0032192,	CG5731,	1	.
CG6611-RA	GCCACAACCACTTCATCGATGCCATCTTCTCGAGGATCAATCGCATTGTTTCGGAAAACTATGATCCCT	69	-	chr3L	10184787	10184856	10184787..10184856	CG6611-RA,CG6611-RB,	FBgn0000451,	ect,	1	.
CG3987-RA	GCCCAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCCCTCATGTATAATCCTCCTTGGATGTACAAT	69	+	chr3R	10966883	10966952	10966883..10966952	CG3987-RA,	FBgn0038292,	CG3987,	1	.
CG30336-RA	TGTATGTTTGCGCTGTGTACATATAATCGAGAGACTTGCATACATACTGCTATCGATAATCTATGAACC	69	+	chr2R	5416197	5416266	5416197..5416266				0	no match
CG7225-RA	GAGCTGCTGAGGAAACTGAACATCCTGGAAGTCTTCAGGGTTCACAAGGTCACCAAGACAGCGCC	65	+	chr2R	15138223	15138288	15138223..15138288	CG7225-RA,	FBgn0004003,	wbl,	1	.
CG9416-RA	TCTGGTGCCCTTGTTCTGTCTGTTCCGCAAGTCCAAGACAATTATCTCAATGTTTGGCATCTGCACGAT	69	-	chr2R	15255905	15255974	15255905..15255974	CG9416-RA,	FBgn0034438,	CG9416,	1	.
CG8958-RA	CCGTTGCGGAAGCTATTTTTGGTCCAGGAGATTGTTTCGGAGACGTAGAAATGGTTGAGGAATGCCCAA	69	+	chrX	15977959	15978028	15977959..15978028	CG8958-RA,	FBgn0030725,	CG8958,	1	.
CG3886-RA	CAGCAGCCCCTCGTAGATCGTAGCTCTAATTAATTTTTAAAGACCTTGTTTTAGTTATTCATTTACGTT	69	-	chr2R	8853942	8854011	8853942..8854011	CG3886-RA,	FBgn0005624,	Psc,	1	.
CG4839-RB	CCAGTAGTCAGCGCAACGATACGAGTGGTCGTTCCAGCACCAAGTCTCTGGAGTTCGACAACGAGT	66	+	chr2L	10153908	10153974	10153908..10153974	CG4839-RB,CG4839-RA,	FBgn0032187,	CG4839,	1	.
CG6413-RA	GACGTGGTGTTCCACTCCTTTGATCCAGTCACGGTTCGTCTTAGCCTGGATTCCAGCAATGTGCAGC	67	+	chr3R	20162184	20162251	20162184..20162251	CG6413-RA,	FBgn0039183,	Dis3,	1	.
CG5697-RA	CTTGTTCGGCACACATCCAGGGTACCACACGGCAAATATGTCCTGCAACGAGAAGACAGCGCTTC	65	+	chr3R	16841969	16842034	16841969..16842034	CG5697-RA,	FBgn0038846,	CG5697,	1	.
CG8180-RA	AAAACGTAGATCTTAAGGTCCCAACATCTCTCTGACTGACTCTGATGCAATTAGCTTTTAACCAATTTA	69	-	chr2R	11359989	11360058	11359989..11360058	CG8180-RA,	FBgn0034021,	CG8180,	1	.
CG4612-RA	ATGTGGCCAAAGACGAGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATTCGGAGGAG	65	-	chr2R	20412503	20412568	20412503..20412568	CG4612-RA,CG4612-RB,CG4612-RC,	FBgn0035016,	CG4612,	1	.
CG12983-RA	GTTTGCGGAGCTCGACGCATGTTTCTACATCGATCAGGGCTATTTCTCGCAGAAGCACCTGGCAG	65	-	chr3L	20956401	20956466	20956401..20956466	CG12983-RC,CG12983-RD,CG12983-RE,	FBgn0037040,	CG12983,	1	.
CG14107-RA	GAGGTCCCTGCTGTCGTTTCCGAAAAGGAGACTCTGGCAGTGGAACCCATGAAGATGGAGGAGTC	65	-	chr3L	13373618	13373683	13373618..13373683	CG14107-RA,	FBgn0036351,	CG14107,	1	.
CG13775-RA	ACCCGTGCACACTTACACCTTACGATCCCTGTCAATGGAATTCCGCTTTTCAGATGATGAGCAGCGTGT	69	-	chr2L	6955483	6955552	6955483..6955552	CG13775-RA,	FBgn0031874,	CG13775,	1	.
CR32886-RA	GGTATCGTGCGAATTGCAAAGATCGACCAACGCCATTTCACTCCAAACCCCAAATTGCTGTAGTCATTT	69	+	chr2R	13590747	13590816	13590747..13590816	CR32886-RA,	FBgn0045800,	Uhg1,	1	.
CG40473-RA	GGCGCTATCATAAAGCCAACGGTCGGCATGTCGAAGTTGCCAGTCAAACCGAAGACTTCGAATGCC	66	.	.	.	.	.				0	no match
CG10006-RA	GCTCCCCCATGCCCTTTTCAAGGAGGAAAAGCACGAGGAGGAAGTCACTGGTATCAATCCCTTGGAATC	69	+	chr3L	14989759	14989828	14989759..14989828	CG10006-RB,	FBgn0036461,	CG10006,	1	.
CG9325-RC	ATGATTTTGTGCCTCATTTAGGGATTTCGCTGCCTCAAAAACAAGACAATAGCGCTAAAACAATGCAAA	69	-	chr2R	15296658	15296727	15296658..15296727	CG9325-RC,CG9325-RH,	FBgn0004873,	hts,	1	.
CG7928-RA	AGAGGACGATCTCGACCGAGAGACCACCATAAGCAAATTCGATGGGAATATTGAGGAGGCACAGCAAC	68	-	chr3R	25862174	25862242	25862174..25862242	CG7928-RA,	FBgn0039740,	CG7928,	1	.
CG5171-RA	GCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGAAAGTGAGTGTGGTCTTTGCGGGC	69	+	chr2L	7404064	7404133	7404064..7404133	CG5171-RB,CG5171-RA,CG5171-RD,CG5171-RC,	FBgn0031907,	CG5171,	1	.
CG5045-RA	TGATTTAAAGTGTGTATTCTTAGCCTTAAGAACAGCTGTTTTGCATAACATTGCGAATCCGGTTGATTT	69	+	chr2L	10356823	10356892	10356823..10356892	CG5045-RA,	FBgn0032229,	CG5045,	1	.
CG18026-RA	CCCAGGCGCTCAATACAGCAGCTCTCAACCCATCAATGATACTGTGCGGCAAAAAAGATCAAGTAAATT	69	+	chr4	1266178	1266247	1266178..1266247	CG33653-RD,CG33653-RA,CG33653-RB,	FBgn0053653,	Caps,	1	.
CG30391-RA	TGTGTCCGCCGTACGAACACCATCAGAAGATCAAGGATCAGTCCGACGCATATCTCAGTCATGCCAAGA	69	-	chr2R	17152987	17153056	17152987..17153056	CG30391-RA,	FBgn0050391,	CG30391,	1	.
CG13222-RA	ATAACGACAAATTAATGTCATTTAAATGATTGATTAGTTTGAAGATGTAGTCGCAACTCAAAGGC	65	+	chr2R	7154271	7154336	7154271..7154336	CG13222-RA,	FBgn0033602,	Cpr47Ee,	1	.
CG31894-RA	AGGTGCAAAAACGTTCTGACATTGGAGTTTCGCCGAAGAGCTTTGACTCACTTGCGATGTCTAAGGCGT	69	-	chr2L	8425658	8425727	8425658..8425727				0	no match
CG5178-RA	CGAACCCATCGCACAACAATTATCATCCAACTCAGATTCACAGCAGATAATCAGAGGCAACCTCCGGTT	69	+	chr3R	11267638	11267707	11267638..11267707	CG5178-RA,	FBgn0000047,	Act88F,	1	.
CG12792-RA	GACATACACGTGTGGACTCCGGTAGAAGACGGCACATGGAAAGTTGATCAACGTCCCCTAGCGGG	65	+	chr2R	1642855	1642920	1642855..1642920	CG12792-RA,	FBgn0022288,	l(2)09851,	1	.
CG5784-RA	CACAGCCTTGGAATCGCTTAGCTTGATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTG	67	-	chr2R	13756184	13756251	13756184..13756251	CG5784-RB,CG5784-RA,CG5784-RC,CG5784-RD,	FBgn0034282,	Mapmodulin,	1	.
CG13819-RA	AATCGCCATCGCAGGTATCCATAGCCGTACATGCCGCCGGCGCACAATTGGATCTGGATCAGATC	65	-	chr3R	19514506	19514571	19514506..19514571				0	no match
CG1902-RC	TGGTGGAGATCATCGACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATGTTCA	69	+	chr2R	5491919	5491988	5491919..5491988	CG1902-RA,CG1902-RC,	FBgn0033434,	CG1902,	1	.
CG5580-RA	TTTGTTCCCCGTTGGATTCCAACTTCTTCCCGTCGAAACCTGTCACAGTCTTGGCTGCCTCAACG	65	-	chr2R	14167395	14167460	14167395..14167460	CG5580-RD,CG5580-RG,CG5580-RH,	FBgn0010575,	sbb,	1	.
CG5524-RA	TGGAGAGGAAAATGCTTGGCGAGAAGGAAACCGTGCTAAGCGAATTGGAAAAGGCTCGCACCGAG	65	-	chr3R	20015713	20015778	20015713..20015778	CG5524-RA,	FBgn0039164,	CG5524,	1	.
CG9294-RB	TGTGGTGCTGCCTCAATCGGAGTGTCGCAATGGCACAACGTATAGGCCTGGACAAATTACGGATAACAT	69	+	chr2R	17749150	17749219	17749150..17749219	CG9294-RB,	FBgn0034666,	CG9294,	1	.
CG31904-RB	TGCACACTCAATGGAACTCACATATACGCATTGTACGAAAAAACTACGTAGAAAGCCGTATATATATTT	69	.	.	.	.	.	CG31904-RB,	FBgn0260479,	CG31904,	1	.
CR30425-RA	GGAACTCTTGATTGATGCTAACACCGAAACGAAAAACGCCGACTGGGTAGCCCTAAAATGGTGGCCCTA	69	-	chr2R	20791044	20791113	20791044..20791113	CG30425-RA,	FBgn0066084,	RpL41,	1	.
CG32937-RA	TCTTCCCTATTGCGGTAGTGATGGTTTAAGTAAAGCGTCCAAGGACTATAGCAATATGGACTCGGGTAT	69	-	chr3R	5552373	5552442	5552373..5552442	CG43067-RC,	FBgn0262477,	FoxP,	1	.
CG10603-RA	TGGAGAACTTCCCCAACATTATGGATTATCCCAAGGATTATATCTTGCGTTGATATGCTGATAGGAAAT	69	-	chr2L	18858057	18858126	18858057..18858126	CG10603-RA,	FBgn0032720,	mRpL13,	1	.
CG6603-RB	GCCCCGTCGACCTGAGCAACTACACACAGCAAGAGTCAAAAATGATTGGCAACGATCAGAAGGAAACGG	69	+	chr3L	14035328	14035397	14035328..14035397	CG6603-RA,CG6603-RB,CG6603-RC,CG6603-RE,CG6603-RF,CG6603-RG,CG6603-RH,	FBgn0026418,	Hsc70Cb,	1	.
CG6575-RA	ACTAGCGAATTGGCAGATCAGAAGCAGTAACTTTGGATCAGAATGACGATGACAAATAGCCCCTGGCGG	69	-	chr3R	17677392	17677461	17677392..17677461	CG6575-RA,	FBgn0015229,	glec,	1	.
CG12069-RA	GCCCAACATCAGCAATCCCGAGGATATATCCAACTTCGATAAGGTCTCTGATAAGCCGCGACCCAAGGC	69	-	chr3R	26519895	26519964	26519895..26519964	CG12069-RA,CG12069-RB,	FBgn0039796,	CG12069,	1	.
CG13931-RA	ATGGGCAGCATAGGAGGAATGGGACACGGCGAAATCACATACGAGGACATGCACGGATGCGAGAG	65	-	chr3L	1701527	1701592	1701527..1701592	CG13931-RA,	FBgn0035258,	CG13931,	1	.
CG8118-RA	CGGACAAGAGTAAAATCGATTTTGGTGAGACGTGTGGTTTTTCATTTGATTAGCCGGATGTATTGGGGC	69	+	chr2R	9947650	9947719	9947650..9947719	CG8118-RA,CG8118-RB,	FBgn0002643,	mam,	1	.
CG6674-RA	CCGCACAAATGGAAGAAGTACTCCCTGTCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGC	65	-	chr3L	9964631	9964696	9964631..9964696	CG6674-RA,	FBgn0036063,	CG6674,	1	.
CG30149-RB	TGGCCATTGTTCTTACAGAAGACTCTGCCAAGATCGACAAGTCGGTGCTCATATCGAAGCTGTTCAGCT	69	-	chr2R	16522497	16522566	16522497..16522566	CG30149-RB,	FBgn0250850,	rig,	1	.
CG12753-RA	GGCGCGACAAAAGAAGATGTACCAGATTGCGCAACTCATCGAGATTCCTGGACAGATGGACTCTCCCGT	69	-	chr3R	12263984	12264053	12263984..12264053	CG12753-RA,CG12753-RB,	FBgn0038427,	ema,	1	.
CG1246-RB	ATCTCCGGAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCTAGATGTGGT	65	+	chr3L	2649100	2649165	2649100..2649165	CG1246-RB,CG1246-RC,	FBgn0035360,	CG1246,	1	.
CG30432-RA	TCGTCATCCTATACGTGGTATTTCGAAAGAGGGAGTGTTTGAGGGTGCAGACTCTAGAGGACACTCGGC	69	-	chr2R	2085432	2085501	2085432..2085501	CG30432-RB,	FBgn0050432,	CG30432,	1	.
CG13141-RA	TCACCACATAATCACAATCCGGCGATATCGCGCTCGGCTATCAAACAGTTTTCCAGCACCGTGGC	65	-	chr2L	10348717	10348782	10348717..10348782	CG34367-RC,CG34367-RB,CG34367-RD,	FBgn0085396,	CG34367,	1	.
CG11248-RA	GCACCTGAATGAATTGTTCGCTGGACAAAATGATGAACTGCAAAAGCTCCAGAAATTGAGCCAAGCGCA	69	+	chr3L	21675091	21675160	21675091..21675160	CG11248-RB,CG11248-RA,	FBgn0037117,	CG11248,	1	.
CG6694-RA	CGCGAGCCCATTTAATCACCGCCAAACAGAGAAGCCTGACGTTGCTCAACAAATCGTTGGTGAAGACCA	69	-	chr3L	8501535	8501604	8501535..8501604	CG6694-RA,	FBgn0035900,	ZC3H3,	1	.
CG12357-RA	GCCGCGGGGGTTATGGCAAACTGTTGTCACAGAAGATTGCACCCAACACGGACAATCGCTAGTTATTAG	69	+	chr3R	13991032	13991101	13991032..13991101	CG12357-RA,	FBgn0022943,	Cbp20,	1	.
CG12870-RA	TCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAAACTCAGCAATTGCGCGAAGCATTCACA	65	+	chr3R	23901404	23901469	23901404..23901469	CG34362-RB,CG34362-RA,CG34362-RD,	FBgn0085391,	CG34362,	1	.
CG32745-RB	TGCTGACGTTGATTGCCCAGGGATCGGCTAACTTTCAGGATGTTTTGCGACACGCCATCAAGATCTTCA	69	-	chrX	6174694	6174763	6174694..6174763	CR32745-RB,	FBgn0052745,	CR32745,	1	.
CG8565-RA	GCGTCCAACGAGGTGTCCGTTCGGACCGAGATCAAGACGGCAATTGAAGTATATTTGAAGGCCAACGAG	69	+	chrX	15733441	15733510	15733441..15733510	CG8565-RA,	FBgn0030697,	CG8565,	1	.
CG9503-RA	GGTGGTGGATGCCAAGCTAAGGGTCTACGGTATCCGAGGACTTCGCGTCATTGATGCCAGTATTATGCC	69	-	chrX	14813742	14813811	14813742..14813811	CG9503-RA,	FBgn0030598,	CG9503,	1	.
CG31220-RA	TGGCCGAGTGTTTTCACACGAACGGCGAAGTTTTACAAATGGATACGGGCACACTTAAGGCCCTAG	66	+	chr3R	15476188	15476254	15476188..15476254	CG31220-RB,	FBgn0051220,	CG31220,	1	.
CG17905-RA	GTGGCCCAGAGATGTGGTGGTCCAAGAATGCCACAATTGAGGATTGGTTCGATGAGATGGTTGGCC	66	+	chr2L	16741370	16741436	16741370..16741436	CG17905-RA,	FBgn0032598,	ChLD3,	1	.
CG13518-RA	AACACACTGGATATGGACAAGGTGCGCTCGTACTACAAGCGGTACCATCAAACAGATCCGGAGTACGCG	69	+	chr2R	18592688	18592757	18592688..18592757	CG13518-RA,	FBgn0034768,	Obp58b,	1	.
CG5265-RA	ACGCCCCGTAATAGAGTTGCCCTGAAAACCATTCAGAATGCTATGTTCACAGTGTCCCTCGACGAGTGT	69	+	chr3R	12965653	12965722	12965653..12965722	CG5265-RA,	FBgn0038486,	CG5265,	1	.
CG4264-RA	CATTCACCCCCACACCTCAATGCAACCATACAGTAACAGTTCTCCAAACAATTTACCAACCAAACACAG	69	+	chr3R	11072039	11072108	11072039..11072108	CG4264-RE,CG4264-RF,CG4264-RA,CG4264-RC,CG4264-RD,CG4264-RB,	FBgn0001219,	Hsc70-4,	1	.
CG30401-RA	TTCCACAATCCTGGCCATGACCCTAGCGAAACCGCAAGTTACCATCAGCACAAAATCGTCGGCTTC	66	-	chr2R	17873813	17873879	17873813..17873879	CG30401-RA,	FBgn0050401,	CG30401,	1	.
CG32224-RA	CCCATCGCCAAATTTCCAAGTGGTGTTCTTGAGTATGACATCACGGTTTCACGTTACCGAGTGTCTTGC	69	-	chr3L	20202474	20202543	20202474..20202543				0	no match
CG18584-RA	CCACGCGTTGCACTGAGAGCTACCAGACAAAGTCAGCCCAGATATCGGTGTTTGGAATTCCACTCTGGT	69	+	chr2R	2703908	2703977	2703908..2703977	CG18584-RB,	FBgn0033107,	koi,	1	.
CG13471-RA	CCTATGGGTCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGAATTCATGGAGGAT	69	-	chr3L	14726054	14726123	14726054..14726123	CG13471-RA,	FBgn0036443,	CG13471,	1	.
CG12104-RA	TCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTCGAGGATCTGCAACAGTCGGTGGATGC	66	-	chr3L	1601460	1601526	1601460..1601526	CG12104-RA,	FBgn0035238,	CG12104,	1	.
CG5417-RA	CCCGCCATGATGAGCATGTACTCGCAGTTCATGAAGAGCAAGATGGACGGGCTAAAGCGGGTTAAGAAA	69	+	chr3R	16406304	16406373	16406304..16406373	CG5417-RB,CG5417-RC,	FBgn0038808,	Srp14,	1	.
CG14766-RA	ACACACCAAGGGAGGCAGAAATTATTTCTAACCGCAAAGCCTTCCGTACCATGGACACGAATCTGAGGA	69	+	chr2R	3833567	3833636	3833567..3833636	CG34431-RA,	FBgn0085460,	CG34431,	1	.
CG30004-RA	AGCAGTCCATCGAGGAAACACCCAAGCTAAGCAACGGAAATAGCTCCTCTAGCAAATCCCTGGTCCAGT	69	-	chr2R	5604601	5604670	5604601..5604670	CG42347-RC,	FBgn0259678,	CG42347,	1	.
CG10704-RA	AATTTAGTGCAATTTTTACATAATTTATTCAGTTTCTATCACTGCAAACAAAACTTCTAACCGCG	65	-	chr3L	12415637	12415702	12415637..12415702	CG10704-RA,	FBgn0036285,	toe,	1	.
CG32771-RA	CCAAGTTTCAAGACCAATTAATCAAGAGACTGAACGAGGATGTTATGCTGCAATTATCGCACGAC	65	+	chrX	4793173	4793238	4793173..4793238	CG42594-RA,CG42594-RB,	FBgn0260971,	CG42594,	1	.
CG4209-RA	CATTCCTCCTTCCATTCGAAATGACATACTTTCGAGGTTCGAACAGCTCTACGATTGGGATTGTTCGCA	69	+	chrX	5228314	5228383	5228314..5228383	CG4209-RA,CG4209-RB,	FBgn0010014,	CanB,	1	.
CG32694-RD	CAACAAACGAACGATTGGACTGCTGCGCGAACTTTTCCCCGACATCACCAAGCAAATCGACGAGC	65	.	.	.	.	.	CG32694-RE,	FBgn0052694,	CG32694,	1	.
CG4729-RC	TGCTGATGCACGTCTTTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGATGTACTATGCCTGCT	69	-	chr3L	16377041	16377110	16377041..16377110	CG4729-RA,CG4729-RC,CG4729-RB,	FBgn0036623,	CG4729,	1	.
CG14400-RA	TGGTGGTGTCCACGTGGGGAAAACTGAAAGCCGACTACCCTAGAGATGTGGCTAAGATCGAGGATTTGG	69	-	chr2L	20857677	20857746	20857677..20857746	CG14400-RA,	FBgn0032896,	CG14400,	1	.
CG7849-RA	CAACGAGACGCAGGAGTACTTAGCTACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGG	65	+	chr2R	1965294	1965359	1965294..1965359	CG7849-RB,	FBgn0033060,	CG7849,	1	.
CG2995-RA	CGAGCATCAGGACTACAGATTCCCTAAGATCGCCTTTTTTTCCTGCCGTGACATCGATGCCGGAGAGGA	69	+	chrX	146761	146830	146761..146830	CG2995-RA,	FBgn0040372,	G9a,	1	.
CG13581-RA	CTGCCCAATTTCAATGAAATGCTTCTATCCACAGAGGCCTCTAAAATATTCGGATTAGAATGCGTACCT	69	+	chr2R	20395131	20395200	20395131..20395200	CG13581-RA,	FBgn0035014,	CG13581,	1	.
CG30183-RA	TCCGCCTTCTTTCGAGACTGTGGCTTGGAGTTCTACAGTGGAGAAAATGCGGACTCCTTGGAGCTG	66	-	chr2R	19579168	19579234	19579168..19579234	CG30183-RA,	FBgn0050183,	CG30183,	1	.
CG7665-RB	AGCATTTGCCTTCCGATGGAAAATCGCGATGTGTACGACACCATTTACCTGATTGCCATTCTGGGCTC	68	+	chr3R	13557827	13557895	13557827..13557895	CG7665-RA,CG7665-RB,	FBgn0016650,	Fsh,	1	.
CG7071-RB	GCGAAGTGGAGAAACTTTTCCAGGTCACCGAAACAGTGGGATCTCTGAAGTACGATCTGTCCCGGTGCA	69	+	chr3R	18188827	18188896	18188827..18188896	CG34131-RA,CG7071-RA,CG7071-RB,	FBgn0083967,FBgn0260467,	muted,CG7071,	2	.
CG13969-RA	AGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCTCTGCGCAACACC	68	+	chr2L	20072598	20072666	20072598..20072666	CG13969-RA,	FBgn0045064,	bwa,	1	.
CG14437-RA	GGGCAAGACCATCGGACACATGTGGGAGCAGGAGAAAGAGCATCGTAAACAGTTCGAGCAGCTCATTCA	69	+	chrX	6666500	6666569	6666500..6666569	CG14437-RA,	FBgn0029502,	COQ7,	1	.
CG11143-RA	CCGTGGAATCGGTCACCAATGGAAAGAAGCTCCATGCCAATGGACACTCCAATGGGTCCGCCAAG	65	-	chr2R	3342604	3342669	3342604..3342669	CG11143-RA,	FBgn0025885,	Inos,	1	.
CG18332-RA	CCTGCTGCTATCATTTCTACGCTCATCCAATCCCCAACACCGTTTACCAGAACTTGTCGAAGCCGCGA	68	-	chr3L	20832327	20832395	20832327..20832395	CG18332-RA,	FBgn0027055,	CSN3,	1	.
CR32911-RA	TTTGTCTTCTTGATAGGAAGTGCCAACTGACACATAAATGAAGCTAGTTTAACCCTCTGAAAGCA	65	+	chr3L	8594587	8594652	8594587..8594652	CR32911-RA,	FBgn0060292,	snoRNA:U49:66Da,	1	.
CG12985-RA	GGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAATCTGGATGTGAAAGCATGGACG	68	+	chrX	17777965	17778033	17777965..17778033	CG12985-RA,	FBgn0030881,	CG12985,	1	.
CG31818-RA	AGGTGCCAATTTGTATCTCAACTGGAAAGGCGAATACCTGTCGCTGTTGCAAATGTGCTCCATCT	65	-	chr2L	16338562	16338627	16338562..16338627	CG42266-RA,	FBgn0259151,	CG42266,	1	.
CG4254-RA	TCGCGATGAAAAGCAGATTGATGTGGAGACTGTGGCAGATCGCAACGCCGAGTACGACCAGTTTCTAGA	69	-	chr2R	19932547	19932616	19932547..19932616	CG4254-RA,	FBgn0011726,	tsr,	1	.
CG11326-RA	TGACTTTCGCACTCTTCAAACCATTCCACTGGATCCCAAAGGCCTATCGCAAGCGGATCCCAACTG	66	-	chr2L	6687694	6687760	6687694..6687760	CG11326-RA,CG11326-RF,CG11326-RG,	FBgn0031850,	Tsp,	1	.
CG5629-RB	CCTTAGTGTGCACCCACATATCAAGATACCCCCCCCATGTGTACTTCTCCCCGCGTATCGATTGTGCAT	69	-	chr3R	14965731	14965800	14965731..14965800				0	no match
CG14879-RA	GCCCTAAGCTACAACTGATCGGGAGAAGAATCCCAAAGATCCCATGATCCCCAAGGTAGCCCGCAATGT	69	-	chr3R	12172763	12172832	12172763..12172832	CG14879-RA,CG14879-RB,	FBgn0038419,	CG14879,	1	.
CG18599-RA	TGGCATTGATAAGGCAAACTCAACTGCCAGGTACATCGTTATTGGGCAATCAAGTATCCGTGTCGGCCA	69	+	chr3R	14096542	14096611	14096542..14096611	CG18599-RA,	FBgn0038592,	CG18599,	1	.
CG15551-RA	AGGCCAACTACAATTACAACCAGCCAACGTATCCTCCAAGGACCAACCAACAATCGGGAACCCAGGTC	68	-	chr3R	26789511	26789579	26789511..26789579	CG15551-RA,	FBgn0062411,	Ctr1C,	1	.
CG31412-RA	CGTCTTTGGAACAAGTGGACGTTATACGATCATCGGCATCGTGGCCTTTGGACCGACGCTGTGCG	65	-	chr3R	5568863	5568928	5568863..5568928	CG34409-RA,	FBgn0085438,	CG34409,	1	.
CG10424-RA	CCAGTGCTAGACTGTGTGGATGCAGTGGAGAGAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTG	67	-	chr3L	19090404	19090471	19090404..19090471	CG10424-RA,	FBgn0036848,	CG10424,	1	.
CG11597-RA	GATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGCGAATGTCTGGAGGATGTGC	65	-	chr3L	11814079	11814144	11814079..11814144	CG11597-RA,CG11597-RB,CG11597-RC,	FBgn0036212,	CG11597,	1	.
CG30043-RA	TCGGAGGTGATTTTACCCGGTGAACTTACCCTGGACTTTCTGGGATATACGGTGCTCGAGTCCGGAACA	69	+	chr2R	8249854	8249923	8249854..8249923	CG30043-RA,	FBgn0050043,	CG30043,	1	.
CG14500-RA	GGCGAAGATACCCGTTTAAGTAAATTCAGGGGGCCATAATTGTTCGTTTTTCAATAATTATAAATTGTC	69	+	chr2R	14077048	14077117	14077048..14077117	CG14500-RA,	FBgn0034318,	CG14500,	1	.
CG30005-RA	ACATTCGTCTTGCATGTTCCATGTACTTTCGAGATGCCTGGCTGTTTCCCATGAACGGGATAGCGCC	67	+	chr2R	5495303	5495370	5495303..5495370	CG30005-RA,	FBgn0050005,	CG30005,	1	.
CG14662-RA	CGGTTGCATCTGCAGATCTGGGAAAATCGTCGTGCCAGGATGGTTTACTGGTGGAGATCTGCGAATCGA	69	-	chr3R	808656	808725	808656..808725	CG14662-RA,	FBgn0037291,	CG14662,	1	.
CG14652-RA	GCAAGTGCAACATCAGGCTCAACGAGTGGGCGTTTTAATACCTCCTTCGCTGCACGTTGATTTGACGCA	69	-	chr3R	363609	363678	363609..363678	CG34357-RA,CG34357-RB,CG34357-RC,	FBgn0085386,	CG34357,	1	.
CG5247-RA	GGGCTTCAAGCATCGATCCTCTCTTCCCGAAGTTAGCTACATCAAGCCAGCGAATTTCATGTACCCCGA	69	+	chr3R	7237180	7237249	7237180..7237249	CG5247-RA,	FBgn0011774,	Irbp,	1	.
CG40225-RA	CTAGCAGTGCCTCTAAAGATACGCAAAGAAGCACGGAACCAACCCATAGCATCGAAAACCCGACTGG	67	-	chr3LHet	2276074	2276141	2276074..2276141				0	no match
CG3619-RB	AGCGAGAGCCGATGGTTTGACCAATGCCCAGGTAGTCCTAATTGCTGTTTTCTCCGTTGCGATGC	65	-	chr3R	15131235	15131300	15131235..15131300	CG3619-RA,CG3619-RB,CG3619-RC,	FBgn0000463,	Dl,	1	.
CG6551-RA	AGACCCTCGACGAGATCAGTCACTTCACTTTTTTCGTCACCTAGCCGGCACTTTCTTTTATTGGCCTCA	69	+	chrX	18554445	18554514	18554445..18554514	CG6551-RA,	FBgn0001079,	fu,	1	.
CG14605-RB	ACCATCTTCGAACAGCTCGGTAGCAGGATGGAGCCCAATCTATGTGGCATATTTCTGGGTGTTGTGCAA	69	-	chr3R	3043955	3044024	3043955..3044024	CG14605-RA,CG14605-RB,CG14605-RC,	FBgn0037486,	CG14605,	1	.
CG1075-RA	GGCCAGATACAAGAAGCGTTACGGCCTAGAGGACCGATACCACCGGCGAATACTCGAAAAGAGAGTGCA	69	+	chr3R	1853589	1853658	1853589..1853658	CR1075-RB,	FBgn0037397,	CR1075,	1	.
CG3769-RA	ATAATTGTCGGTGGGAAGTACGATGTGTTTTCTGGTTTCGATCCTATTATCAGGAAGCACACCTG	65	+	chr2L	9436232	9436297	9436232..9436297	CG3769-RA,	FBgn0032119,	CG3769,	1	.
CG13622-RA	TGGGGCTGGGAACGAACAGGAGGTATTGACACCTCGAACACGAACCATCATGAAAGGTACACGGACAAT	69	-	chr3R	20348767	20348836	20348767..20348836	CG13622-RB,	FBgn0039202,	CG13622,	1	.
CG7504-RA	GCTGCTAGGCTCAGTTTTGCGTGTGATGAACCGCGACCAATTCCACCTACTACGTTTTGGAATGCACGA	69	-	chr3L	8126186	8126255	8126186..8126255	CG7504-RB,CG7504-RC,	FBgn0035842,	CG7504,	1	.
CG32308-RA	CGCCATGGGAGCATCGACAGTTAAGCCCTTTTCTGAAGCGGAATGCAAGGCTATCAAGAAGTTCACGAA	69	-	chr3L	2037976	2038045	2037976..2038045	CG42355-RB,	FBgn0259701,	CG42355,	1	.
CG14334-RA	AAACAGAGCAGCATAACAAACCAAAGCCAGAAATCAAAGGTGTGTATCCGAGGGAAGGGAAATGTGTGT	69	-	chr3R	13145839	13145908	13145839..13145908	CG14334-RA,	FBgn0038498,	beat-IIa,	1	.
CG31689-RB	CCTACCTGAAGCTGGGCATTCATGTGCTCTGTTCCATTTTGATTGGCTTGTTCTTCGGCGATTCGGG	67	+	chr2L	2738453	2738520	2738453..2738520	CG31689-RD,CG31689-RC,CG31689-RA,CG31689-RB,	FBgn0031449,	CG31689,	1	.
CG14614-RA	TTGGTCTGGTCCTTGCTGAAGCACCTGACTGCAATTGCTGAACAACGCACAGTCAACAAAGAAGCAAGT	69	-	chrX	21854986	21855055	21854986..21855055	CG14614-RA,CG14614-RB,	FBgn0031186,	CG14614,	1	.
CG5708-RA	TCCATTCATACAGAGACATACTAGCGGCACATCACCAAGACTCATCTAGTCCTGAGAACTTCGCCCCCA	69	-	chr2L	10225668	10225737	10225668..10225737	CG5708-RA,CG5708-RB,	FBgn0032196,	CG5708,	1	.
CG14950-RA	GCTGAAGATGGGCTTCCTGAAGATCAAGGGCAACGTAGAGGTGGAGCTAATCTGCGCCCGTAACATTGT	69	-	chr3L	2658352	2658522	2658352..2658375,2658476..2658522	CG14950-RB,	FBgn0035364,	CG14950,	1	.
CG3501-RA	CGGAGCCATGCGGGATTTGGTTGACTTTGACAACCATCTAGATAATCCGGACAAAAACTGGACCAACGA	69	-	chr2R	18769072	18769141	18769072..18769141	CG3501-RA,	FBgn0034791,	CG3501,	1	.
CG31001-RA	CCATCGGTGGAACCTACCTTATCGTCGTTTCTTCGCGAACCAGGTGATCGCAACGCCAAAGGAAGTTG	68	.	.	.	.	.				0	no match
CG1841-RA	TACCAGGCTGCTCTTTGAACACAGTGCGTCTACGGGTTACCTGCAAGCATCAAAACATCGGAGAGGAGC	69	+	chrX	11616364	11616433	11616364..11616433	CG1841-RB,CG1841-RA,	FBgn0030330,	Tango10,	1	.
CG7582-RA	TGAAACCCCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCGGAGTGCCCATCT	69	-	chr3R	25506481	25506550	25506481..25506550	CG7582-RA,	FBgn0039681,	CG7582,	1	.
CG32121-RA	CGCTCTCGGCCAAGGTCAACTCTATAGTAGCAAGCCACCACTTTATAGTGCAGCAGTCACGCCGA	65	-	chr3L	13411368	13411433	13411368..13411433	CG32121-RB,	FBgn0052121,	CG32121,	1	.
CG14511-RA	GCCTGTGCACGTTGATCCTGAAGAGGAGTTACCGGTTGAGTCAGTACATATCGGTGCTCATGATCAGCG	69	-	chr3R	24972126	24972195	24972126..24972195	CG14511-RA,	FBgn0039641,	CG14511,	1	.
CG10845-RA	ACAGCCCGAAGACGCACATACGGTACTATAACATTCGACTGACAAGGCTACTCAATCAACTAATGGGCA	69	+	chr3R	20727557	20727626	20727557..20727626	CG10845-RA,	FBgn0039246,	CG10845,	1	.
CG14816-RA	AACTGAGACCTTGAGCACAGATCGCGAGACTGTGTAAACCACCATGTACATTTTGCCGCACCGTAACGT	69	-	chrX	1766496	1766565	1766496..1766565	CG14816-RA,	FBgn0023517,	Pgam5,	1	.
CG14546-RA	ATCTCCCAAGACAATCCACTTCTTACAGCATGCCAGACCTTTCCGGCCGTACTTCCCCCAATCCTACG	68	-	chr3R	21747134	21747202	21747134..21747202	CG14546-RA,	FBgn0039395,	CG14546,	1	.
CG14937-RA	GGCCTGCTGGAATTCGTGATCAATTGTCGACAGCTGAGAGTCCTCGACATCACTCGAACCTTCTGCCAT	69	-	chr2L	11792849	11792918	11792849..11792918	CG14937-RA,	FBgn0032377,	CG14937,	1	.
CG32267-RA	GTCCTGAAGCATTTAAATACGGCGTAGAAGAAAAAATGATCGAAGAAGACTAAAAGCTGTCTACTTATT	69	-	chr3L	3471779	3471848	3471779..3471848	CG32267-RA,	FBgn0052267,	CG32267,	1	.
CG32469-RA	AGACCGAAAATCGCAAAAAGTAACTGCAAAGCAAGCTAACCGAGTGGAAAAGCAAATAGCCCGGGC	66	+	chr3R	5754723	5754789	5754723..5754789	CG34360-RB,CG34360-RF,CG34360-RE,	FBgn0263097,	Glut4EF,	1	.
CG17888-RC	TCAAGACAGAGTTAAAGAAATAAACCTAAAGCCGTAACCGAAATCGAAACTAACCCTAACGATAGACGC	69	-	chr3L	7807529	7807598	7807529..7807598	CG17888-RF,CG17888-RB,CG17888-RG,CG17888-RD,CG17888-RC,CG17888-RI,CG17888-RJ,CG17888-RK,	FBgn0016694,	Pdp1,	1	.
CG1504-RA	CGCAGGCACCTCAAACATCAAGCTGATTCTGCTGACCAACAATCCGTTAATCCGCATCGACAGCTCGG	68	-	chrX	20182093	20182161	20182093..20182161	CG1504-RB,	FBgn0031100,	CG1504,	1	.
CG3488-RA	CCCGAGTTGGATGAGGCTTACACGCGGAGAGTGTACAACTTTCCCTCCACCCAGGAGTTGTACAAGT	67	+	chr2L	3167792	3167859	3167792..3167859	CG3488-RA,CG3488-RB,	FBgn0014906,	Hydr2,	1	.
CG18171-RA	CGATCTTAGCTTTGTGCGCCACTTTGTCAATCTGGTATCGCTGAACCTGGAGTTTCTGGGTCCGGC	66	-	chr3L	1721856	1721922	1721856..1721922	CG18171-RA,	FBgn0035262,	CG18171,	1	.
CG3665-RB	CCCGCAGCGATTTGATTGTGCATCCCGTAACGAGGCAGTATTACTCTGGATACAAGTGCATTGCGACCA	69	-	chrX	4036585	4036654	4036585..4036654	CG3665-RA,CG3665-RB,CG3665-RC,	FBgn0000635,	Fas2,	1	.
CG31537-RA	CAACAAATTGCTCGGCTGATGGTTTTAGTTCCGGAGGCTCGGGGTCGAATAGCCAGCGTTCATCC	65	-	chr3R	1005666	1005731	1005666..1005731	CG42312-RD,	FBgn0259212,	cno,	1	.
CG30074-RA	GGGCTCTGATGAATTTGTGCACGTGTATCTGGATGGATTCAGGAGCTGCGGTAATCAGGAGAAGGTGCT	69	+	chr2R	10261017	10261086	10261017..10261086	CG30074-RA,	FBgn0050074,	Obp50d,	1	.
CG14989-RB	AGTGTCGCAATTAGGCCAAAGTGCCAACCAAGAGTTTAGTGTTGGTTACGGCCCTTAAACGCAAAAGCA	69	+	chr3L	4091485	4091554	4091485..4091554	CG14989-RE,	FBgn0035495,	CG14989,	1	.
CG6981-RB	TGCGGAAATCGTAGCCTCAGGCGTCATGGTTGGATTCTTGATTTACACTGGATGCCACACCATTGCCTT	69	+	chr3L	20182192	20182261	20182192..20182261	CG6981-RB,CG6981-RA,	FBgn0036945,	CG6981,	1	.
CG10823-RB	AGCTCCTTGGGCTCATCGAGTGCCATTAAACTGAATAACAGCGCCATTACGGACACTCTGCTGGG	65	-	chr3R	17117470	17117535	17117470..17117535	CG10823-RB,CG10823-RA,CG10823-RC,	FBgn0038880,	SIFR,	1	.
CG4740-RA	CAGTCAACAGTCAGCCGCTTAGTCAAGTAGATCGAAAATCAAGAGATTAATACAGCAAGATGAGCAAAA	69	+	chr2R	9281214	9281283	9281214..9281283	CG4740-RB,	FBgn0041579,	AttC,	1	.
CG10917-RA	CTACCGCCAGAATACGGATCAGATTCAGGGCGAGATATTCAGCTACTACTTGGGCCAGCTCTTAAACAT	69	+	chr2R	14122477	14122546	14122477..14122546	CG10917-RA,	FBgn0000658,	fj,	1	.
CG10814-RA	GCAGAAGTTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCAAGAACTGCTCGA	69	-	chr2R	9264747	9264816	9264747..9264816	CG10814-RA,	FBgn0033830,	CG10814,	1	.
CG7484-RB	CCCCAACCTGCAGATCAAATACGTAAGAGGACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCA	68	+	chr3L	17648464	17648532	17648464..17648532	CG7484-RB,	FBgn0036745,	CG7484,	1	.
CG14711-RA	GGGCGCTATTAGTCGAAAACAATGCAATACAATTTCTGTTAGATAATTCATTAATGTACATTTAATTAT	69	+	chr3R	7450545	7450614	7450545..7450614	CG14711-RA,	FBgn0037922,	CG14711,	1	.
CG14979-RA	TCGCAACTCTCCGAGGGATTTGGCATCAAGGACATAGGACTGACTATCACGGCTTTGTGGAACATAGGA	69	-	chr3L	3895433	3895502	3895433..3895502	CG14979-RB,	FBgn0035468,	Gr63a,	1	.
CG11694-RA	GTGCCCCGTGCGACTTCAAGATGAATGGAAAGACCAGGGTAAAGGCCTCATGCATTGCGCAGAAG	65	-	chr3R	4137574	4137639	4137574..4137639	CG11694-RA,	FBgn0037571,	CG11694,	1	.
CG13539-RA	AGCGCATCCAACACCATCCCAATTACCTGAAGACAGTGAAGCTCATCGATCGAATGAACTGCTCCACCA	69	+	chr2R	19072281	19072350	19072281..19072350	CG13539-RA,	FBgn0034833,	CG13539,	1	.
CG30421-RA	GTGCTGCACAACCATCAATGGCACGGATCTAGGAGCAGCGTGTCAGCTGTAGAGAATGCTACGCAAC	67	+	chr2R	20643220	20643287	20643220..20643287	CG30421-RA,	FBgn0050421,	CG30421,	1	.
CG4182-RA	CGAGCAATCCAAAAAAAATCGAATAATTGAAAAATCCAAAATGAACCCACTAGGAATGTTGAGCCTGGG	69	+	chr2L	15035523	15035592	15035523..15035592	CG4182-RA,	FBgn0041713,	yellow-c,	1	.
CG31771-RA	ACGGACAAAGAGAGTGAAAAGGACGTTCACGCGACAGACAACAGGCACACACTTAACCACACGCAC	66	-	chr2L	14040404	14040748	14040404..14040439,14040717..14040748				0	no match
CG7551-RB	TCCTAGGAATGCTGAGCAGTTGGAGTGTGTTTCAAGTTCTGGTCGATGACTTGAAGAGTCGTGGCATCA	69	+	chr3L	11451867	11451936	11451867..11451936	CG7551-RB,	FBgn0036161,	CG7551,	1	.
CG17592-RB	TTACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCTTTGCCAATGGTCAG	65	-	chrX	4442263	4442328	4442263..4442328	CG17592-RB,	FBgn0029711,	Usf,	1	.
CG31612-RA	CTCATTCCACGGAGAAGAATGGTGAGGAGTGGTTTTCGTGCGATCAATGCGATTTCAGAGCCCGCA	66	-	chr2L	21762819	21762885	21762819..21762885	CG31612-RA,CG31612-RB,	FBgn0051612,	CG31612,	1	.
CG17282-RA	TCGCCAAATCGCAAACTTTGCTTACTGCTAAATTTCGAAGCTCCCAATTTGCAAATATTCCAAAA	65	-	chr3R	16944505	16944570	16944505..16944570	CG17282-RA,	FBgn0038857,	CG17282,	1	.
CG10979-RA	CAAGGACTTCGTCTACGACTTGGTCAGTTTCAAACCGGATGGATCATGCCAGCAACCTCCGGGTG	65	+	chr3R	1623332	1623397	1623332..1623397	CG10979-RA,	FBgn0037379,	CG10979,	1	.
CG31699-RA	ATTAGACAGGGCTCTTAGGTTCTACGGTACAGCCAATTCTACGATTATGATTCAGCACTTTCTGC	65	+	chr2L	19453181	19453246	19453181..19453246				0	no match
CG1455-RA	CCTGCGATTGCTGAGCTTTCGATTGCAGGTGCATACTTATAGAATCTCTCCGCAAAAACTCCCGGGCGA	69	+	chr3R	26872408	26872477	26872408..26872477	CG1455-RA,CG1455-RB,CG1455-RC,	FBgn0010015,	CanA1,	1	.
CG6504-RA	GCACCCAGACTTCCGTAACTTCATCACCTCGATTTTGACCATGATTCGGATGATTCTTGGCGACTTTCA	69	+	chr2L	12400903	12400972	12400903..12400972	CG6504-RA,	FBgn0041195,	Pkd2,	1	.
CG16903-RA	GCTCTCCTGGAACTTCATGAATGACTCGCTGAGGACGGACGTTTTTATGCGCTACACACCAGAGGCGA	68	-	chrX	1973432	1973500	1973432..1973500	CG16903-RA,	FBgn0040394,	CG16903,	1	.
CG17343-RA	GAACTGCAGACCATCCAGCTGAAGCTGTCCGATCTCAAGGAGTACGAGCAGGCTAAGATGGAGCG	65	+	chr2L	19065004	19065069	19065004..19065069	CG17343-RA,	FBgn0032751,	CG17343,	1	.
CG4849-RA	GTCGCAGGAAGGGTCTGTCCGAGGACGTGTCCATCAACAAATTCTTCGACGATCCTATGTTGCTGGAGT	69	+	chr3R	23792525	23792594	23792525..23792594	CG4849-RA,	FBgn0039566,	CG4849,	1	.
CG13465-RA	AGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAGAAGCTGCTGAAGACCATCAAGAAGGTCT	68	.	.	.	.	.	CG12487-RA,CG13465-RA,	FBgn0040487,FBgn0040809,	BobA,CG13465,	2	.
CG3231-RA	TCCCCTACTCACAACGCTACTGAAAACGTTAATCCGAAGAGTCATTCCATCCTTACTGTGGGTGCTGCT	69	+	chr2R	19978386	19978455	19978386..19978455	CG3231-RA,	FBgn0086129,	snama,	1	.
CG4908-RA	GGACCAGGGAACAACAGACATTGGACCTTCACATGGGTGTTCCTTGGGAGACAGTGACGCTTACAGC	67	+	chr2L	10223497	10223564	10223497..10223564	CG4908-RB,CG4908-RA,	FBgn0032195,	CG4908,	1	.
CG6493-RA	TGTTCTGGAGGCCCTTATTGCAGCCGTATACCTGGACTGCCGAGATCTCCAACGTACTTGGGAGGTAAT	69	-	chr2R	13463158	13463227	13463158..13463227	CG6493-RA,	FBgn0034246,	Dcr-2,	1	.
CG5357-RA	CCGAGTTACTCAGCCCACATCATATTCACATGCCAAACTTTTCCAATCGAAAGTTTTCGGCCAGACGGT	69	+	chr2R	19345415	19345484	19345415..19345484	CG5357-RA,	FBgn0034862,	CG5357,	1	.
CG11407-RA	ATCGGATCAGGAGTCGCCTAAGCAAGGACTGCCTACACTTTGCCTACGGCTTTACAGAACTGGGC	65	+	chr3R	15608086	15608151	15608086..15608151	CG11407-RA,	FBgn0038733,	CG11407,	1	.
CG7945-RA	ATCAACAATATTTTTGCATCGGGCCAAAGGTGCATTAAAACCGGAGCCTCAAGTCTCGGGCGGCA	65	-	chr3L	15516933	15516998	15516933..15516998	CG7945-RB,CG7945-RA,	FBgn0036505,	CG7945,	1	.
CG17931-RA	TACATGAAGCAACATACATAATTCACGAGAATTGTATACAACTACGCATAGATATTACCGGGCTGTACA	69	-	chr3R	12184068	12184137	12184068..12184137	CG42446-RA,CG17931-RA,	FBgn0259917,FBgn0038421,	CG42446,CG17931,	2	.
CG31668-RA	TCCCAACGACTTCCGGTCTCTGTGGAAGGATGCTTGGCCAATGCTAGTGTTGCTGAAAACGCTTG	65	-	chr2L	2204072	2204137	2204072..2204137	CG31668-RC,	FBgn0051668,	CG31668,	1	.
CG10908-RA	GCATGACGTCACTGTTCGTCTTTCCCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCT	69	+	chr2L	1974395	1974464	1974395..1974464	CG10908-RA,	FBgn0031376,	Der-1,	1	.
CG10806-RA	CCACATCCCCAGCATTTCCTACACATACAACACATAGTCCCGCTTCCGATTCGCTCCACTTGTTGTGTC	69	-	chr2L	6861001	6861070	6861001..6861070	CG10806-RB,CG10806-RA,	FBgn0031865,	Nha1,	1	.
CG7031-RA	CCGTGGAGAAACACATCCCAGTACCGGTGGAGAAGCATGTGCCCTATCATGTGGTCAAATATGTGCCC	68	+	chr3R	18631762	18631830	18631762..18631830	CG7031-RA,	FBgn0039027,	CG7031,	1	.
CG18343-RA	TGTCGGCTTATCCAGCATATACGTCAGTCTAAACATGGAGAAAAGCTGCAGTATTGGCAACGGACGGGA	69	+	chr2R	8026328	8026397	8026328..8026397	CG18343-RA,	FBgn0033683,	CG18343,	1	.
CG6989-RA	CGCCGTCATCTCGAGCTCCATATCGTTCTGGATACCCTGCACCATTATGATATTCACCTACCTGGCCAT	69	-	chr3R	8380054	8380123	8380054..8380123	CG33976-RA,CG33976-RB,CG33976-RC,CG33976-RD,CG33976-RE,	FBgn0038063,	Octbeta2R,	1	.
CG11203-RA	AGATGGAGGAGAATCCCATAGTAATCATTCCACAGGAGTGCCGTTGTCCCGCTGCTCCGGATTTGG	66	+	chrX	10811044	10811165	10811044..10811079,10811134..10811165	CG11203-RA,CG11203-RB,	FBgn0030249,	CG11203,	1	.
CG32369-RA	GCCAAAGCCAGTGAATGGTTCGAAAGCCTGAGTACAGAGCAGAAGCACGAGATTCTGCAGAGCTTTGGC	69	-	chr3L	7771996	7772065	7771996..7772065	CG32369-RA,CG32369-RB,CG32369-RC,	FBgn0052369,	CG32369,	1	.
CG17916-RA	ACGCAGAAACGGATCTGACGGTCTACTGGTTTTCCTACTGGGGATTGGCTCATTGTGCCTATGTGGC	67	+	chr3R	16331090	16331157	16331090..16331157	CG17916-RA,	FBgn0038798,	Or92a,	1	.
CG33255-RA	CATTGGTTTATAAAGCGCTAGTTCTTCTCATTCCAAATGTGATTCTTCCCAGCATATTGAGATGA	65	+	chr3L	19417994	19418437	19417994..19418022,19418400..19418437				0	no match
CG5751-RA	GGCCGCTTCAATAGCAGTCTTTCTGTCGTGGTTCCGATTGCTACTGTTCCTGCAAAGATTCGACCAGGT	69	-	chr3L	8888809	8888878	8888809..8888878	CG5751-RE,CG5751-RF,	FBgn0035934,	TrpA1,	1	.
CG1171-RA	AAATGCTGCTCGAGATCTTCCGCTTCGTGCAATCTCAGGCACAGCTCTTTCTGGACTGCAAGCAC	65	+	chr3L	4141819	4141884	4141819..4141884	CG1171-RA,	FBgn0004552,	Akh,	1	.
CG4317-RA	ATTCGAAGGAACTGGAGTTCAACAATGATCAGATTAGGATTAGGACTAGTTTTGTAAGTGATGAGCGGC	69	-	chrX	5977430	5977499	5977430..5977499	CG4317-RA,	FBgn0026060,	Mipp2,	1	.
CG31482-RA	CAATCGGTTGAGGGAGAAGCATGGAAGTCCGCCTCTGACCTTGGACGATGAACTCACAAAGGGATGC	67	+	chr3R	2427178	2427245	2427178..2427245	CG31482-RA,	FBgn0051482,	CG31482,	1	.
CG17266-RA	TGGAATCAAATACAGTCCCAACTGAGAAGCTCCAACAATCCCGTCGTTTTCTTCGACATTGCCGTAGG	68	-	chr2R	2563118	2563186	2563118..2563186	CG17266-RA,CG17266-RB,	FBgn0033089,	CG17266,	1	.
CG4760-RB	CCAGTCGCATCCACAATCCCCATGCTGGAGTATCGAGGATCTGAGGGATACTTTGCCGAGGGTATAGCT	69	-	chr3L	9095783	9095852	9095783..9095852	CG4760-RB,CG4760-RD,	FBgn0011206,	bol,	1	.
CG30088-RA	CGGTGCTGTCCATGCCAATCACAATTAATCAGCTTTGCGTCGGATTTCAGGGATCGGACACCTGCTC	67	+	chr2R	11579438	11579505	11579438..11579505	CG30088-RB,	FBgn0050088,	CG30088,	1	.
CG7058-RA	ACGAGGACTCCGTGGTCTGCCTACTGGGAATAGCCGATCGATATATGGCCACTGCTTTAAAGTCGAAAT	69	+	chrX	18704605	18704674	18704605..18704674	CG7058-RB,	FBgn0030961,	CG7058,	1	.
CG31270-RA	GTGCGACTTGAGAAAAATATTGGATATGAAAAGCCTGGACAAAAATGTATTTACCAGCATTTCCG	65	-	chr3R	12748410	12748475	12748410..12748475	CR43261-RC,CG31270-RA,	FBgn0262906,FBgn0051270,	msa,CG31270,	2	.
CG33125-RA	TGAGGTATTCCCAAGGAAAACAAGTAGTTGGCCGCGACAAAGTCCACGAAGCTTTCCAGGGCCAC	65	-	chr2L	2649002	2649067	2649002..2649067	CG33125-RB,	FBgn0053125,	CG33125,	1	.
CG12873-RA	GACGGCCAGATGTCCATCCAAGACATGTGTAGTGGTTACGGCGTTTTTGCTGTGGTATCCTTCCTGGC	68	-	chr3R	23629709	23629777	23629709..23629777				0	no match
CG33157-RA	TCGGAGGAGGTCCAAATGGACAATGTGGCTCTGACTGGCATGAAATTCTTTCGGCTAACACGCGG	65	+	chr3L	4035396	4035461	4035396..4035461	CG32258-RA,CG32258-RB,CG14987-RA,	FBgn0045476,FBgn0035486,	Gr64e,Gr64d,	2	.
CG32149-RC	ACAGCAGGAGCAACACTATGACGATATGATGGACACGGAGGATAGCTACGGACAGCAGAAGGAGC	65	+	chr3L	15598177	15598242	15598177..15598242	CG32149-RC,CG32149-RD,	FBgn0036518,	RhoGAP71E,	1	.
CG6954-RA	CGTGGTTCTCAAAGGGAACAATGGCCCCATCTATGGACCCGAGATGCTAGAGAACTTTTGCCTGGTTGC	69	+	chr3R	18507081	18507150	18507081..18507150	CG6954-RA,CG6954-RB,CG6954-RC,CG6954-RD,CG6954-RE,	FBgn0039000,	CG6954,	1	.
CG3561-RA	CGCCACACTTCTGTCACTCGTGAAGCATGATCTTGCCAAACGTCGCCCTCTTATCGTGTTCAGCAACAA	69	+	chr2L	812755	812824	812755..812824	CG3561-RA,	FBgn0086130,	KH1,	1	.
CG1849-RA	TACAAATCCCAGCAGAAAACACGAAAACTCAAAAACTCAGCCCAAAAAGAAAATACCAAGAAAGCAAAC	69	+	chrX	20568011	20568080	20568011..20568080	CG1849-RA,CG1849-RB,	FBgn0003300,	run,	1	.
CG10923-RA	GACGACGATCTGCATTTGAGCATGGAGGACTTTGATAGCCAGGACACCGAATCAGATTCCGAGGAGC	67	-	chr3L	9356685	9356752	9356685..9356752	CG10923-RA,	FBgn0004379,	Klp67A,	1	.
CG11456-RA	TGCTCCTTTGGAAAGGAATGCCCCTTCAAGTTCCAAGATGCTACCAAAATGGAGCTCCACTGTAGTT	67	+	chr3L	20835503	20835570	20835503..20835570	CG11456-RA,CG11456-RB,	FBgn0037031,	CG11456,	1	.
CG7636-RA	CCGCATTTCGATTTTGTAACAGTTTGCATATATTTTCGTTCTATTTAATTTTTCAAATAAAACTATCGA	69	+	chr3L	11113969	11114038	11113969..11114038	CG7636-RA,	FBgn0036135,	mRpL2,	1	.
CG14941-RA	GCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCCAGGAGAAGTCAACGCTGCCTTTCC	68	-	chr2L	11827929	11827997	11827929..11827997	CG14941-RA,	FBgn0000588,	esc,	1	.
CG5614-RA	GCGCGATTGGAAGTTCGGTGTGCAAAAAGGAGGTTCCAAAAAGTTGGTTCAGCTACCGGATCCTATGGA	69	+	chr3R	11606014	11606083	11606014..11606083	CG5614-RA,	FBgn0038359,	CG5614,	1	.
CG1507-RB	GCTCAAGCTTTCGCTGTGACTCAAAAACACTCCAAAACTCGGATTTGCATCAGTCTTCCTACAAAGGCG	69	+	chr4	578720	578789	578720..578789	CG1507-RA,CG1507-RB,	FBgn0022361,	Pur-alpha,	1	.
CG30030-RA	AGGATGCAAGAGTTCGATCGTTCCGTTTTGATGGTGTTCCCTCATGTTCAGTGGAACTATCGACGCGCT	69	+	chr2R	7249752	7249821	7249752..7249821	CG30030-RA,	FBgn0041241,	Gr47b,	1	.
CG7626-RA	GCAGTCTGGCCTTTCTCCATTGCCGCATGTACACGGAGAACGGTGGAATATTTGTGTGCAAGACTAGGC	69	+	chr2R	15327979	15328048	15327979..15328048	CG7626-RA,	FBgn0040273,	Spt5,	1	.
CG5955-RA	CCGACATCCTGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCATTGACTGGCTGATCCAT	68	+	chr3L	20460947	20461015	20460947..20461015	CG5955-RA,	FBgn0036997,	CG5955,	1	.
CR32747-RA	ATAATTTTGATACTTCCATATCTCGCTGTAAAATGGGTGATGATCATAAACTAGGTGGCGTGGAG	65	-	chrX	6256839	6256969	6256839..6256868,6256933..6256969	CR32747-RA,	FBgn0016974,	swaPsi,	1	.
CR31877-RA	AAATGATGAAACAGATGACGAGACTGAAGGAACAAATTCTCGACTTGGCGCTGTATTTTTCAGTG	65	-	chr2L	9894839	9894904	9894839..9894904	CR31877-RA,	FBgn0025881,	snoRNA:Me18S-A1576,	1	.
CG10944-RB	TGATCACAACCAAATGATCCACGAGAGGAGAAATAAAACTTTGTAACCATTTATGTTAAATAAAC	65	-	chrX	7793672	7793737	7793672..7793737	CG10944-RB,CG10944-RA,	FBgn0261592,	RpS6,	1	.
CG1753-RB	CCCCCGGTCATTCTCAAGTCGGATGCAACTGTTGGTGAGGCTATTGCCCTGATGAAGAAACACCG	65	+	chrX	20919524	20919589	20919524..20919589	CG1753-RA,CG1753-RB,	FBgn0031148,	CG1753,	1	.
CG33131-RA	GGAAGACGCGAAGAGAAACCAGGGTATAACCCACATCCACCTGAACGGCGATCGAGTGATTGTGGC	66	-	chr2R	1915187	1915253	1915187..1915253	CG33131-RA,	FBgn0033052,	SCAP,	1	.
CG4163-RA	ACACCATGGTGATTGCCTGTTTCAGGGGAATGCTGATCAACCCAGTCGACTTTCCCGATCCAGAGTCAT	69	+	chr2L	16295542	16295611	16295542..16295611	CG4163-RA,	FBgn0001992,	Cyp303a1,	1	.
CG10851-RG	GGCTGACTGGTTGAGTTAACGATGTTCGATCGGACTTTCGATGAGGTCATGAGGTGTCCTTGGTGTCAT	69	+	chr3R	9490504	9490573	9490504..9490573	CG10851-RF,CG10851-RD,CG10851-RI,CG10851-RK,	FBgn0004587,	B52,	1	.
CG6395-RA	CATTGTTCAAGCCATGCATCTAGCCTTGCAGCTGTACCACTATACAACTCGAATCGATAGCCAAGCCGC	69	+	chr3L	22265784	22265853	22265784..22265853	CG6395-RA,CG6395-RB,CG6395-RC,	FBgn0004179,	Csp,	1	.
CG2961-RA	ACTATCTTCTATTCTATCGTTATGTATTTTTTTTCCTAGGCTAATTCTTCACAGTCATTATCAGAAAAA	69	-	chrX	10125086	10125155	10125086..10125155	CG2961-RA,	FBgn0030187,	Ipod,	1	.
CG13594-RA	CTGGTCAACAAATCGCAAATAAATTAATTGGGAATTGCAATTTCAATTCAATCCAATTCCGAAGCAGCG	69	-	chr2R	20503301	20503370	20503301..20503370	CG13594-RA,	FBgn0035041,	CG13594,	1	.
CG4812-RA	ACTCCAACAGCAAGATTAACGACATTGGAGTGGTGCGTCTGAAGACTAAGCTGACCTTTGGCTCGACCA	69	+	chr2R	9322056	9322125	9322056..9322125	CG4812-RA,	FBgn0019928,	Ser8,	1	.
CG6447-RB	GCGCCTTCATCGTAAGTGGTGTAGCCAGGACTTAAGACGAATTCACAACTAACGGATAACCCTTGAATC	69	-	chr3R	22451251	22451320	22451251..22451320	CG6447-RB,	FBgn0039437,	TwdlL,	1	.
CG1800-RA	TCCTCCGGGTCCAATTTGAACAACGTGGAACTTTGATTGGGAAACACACATCTCTCTCGCCAACATTGA	69	+	chr3R	27446803	27446872	27446803..27446872	CG1800-RA,	FBgn0039861,	pasha,	1	.
CG2163-RA	CGGCACAATCAACCGAGTAACCATACTCTGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATA	66	+	chr2R	4020151	4020217	4020151..4020217	CG2163-RA,CG2163-RB,	FBgn0005648,	Pabp2,	1	.
CG32233-RA	GGCGCGACGACACAAACAGAACGTGATTCGCATACAAATAAACAAGGCTACAGAGCGCACTGTAGAGGA	69	+	chr3L	4949768	4949837	4949768..4949837				0	no match
CG32970-RA	GATCGGGAATGCCAGTCTATACGCAACAGCAACACTTTATACCGCTGCGATCCACGACGACCCCG	65	+	chr2L	14309096	14309161	14309096..14309161	CG42677-RC,CG42677-RD,CG42677-RE,CG42677-RF,	FBgn0261563,	wb,	1	.
CG14901-RA	TGGTGGTCCACATTGTTCCTCTGGCTTAAGTTGCTACTCTCCCTCTACGACCTGTTATGTAGTGTGCCA	69	-	chr3R	12324246	12324315	12324246..12324315	CG14901-RA,	FBgn0038440,	Gr89a,	1	.
CG2899-RA	GCTACCTGCACGCAAGGGAGATCATCCACAAAGATCTGCGCACCAAGAACATCTTCATCGAGAACGGC	68	-	chr3R	1306926	1306994	1306926..1306994	CG2899-RA,	FBgn0015402,	ksr,	1	.
CG3492-RA	TGCTAGGCGGAAATCTATATTCTTATTCTTAAGCCATGTCACCCCACTTAAAGCTGCTGTAAACCACAA	69	+	chr2R	20361646	20361715	20361646..20361715	CG3492-RA,	FBgn0035007,	CG3492,	1	.
CG3722-RA	CAGCCCTTCTACGAGGAGAAGCTGTACAAAGATCCTCATGCGTTACAGGGGAACATGCGCGACCC	65	-	chr2R	16938596	16938661	16938596..16938661	CG3722-RA,	FBgn0003391,	shg,	1	.
CG7029-RA	AGACTAATGCCAGCACAGACGTGATCTTCTCACCCTTCAACTACAAGATGACAATGGATGGAGCGACTG	69	+	chr3R	18616425	18616494	18616425..18616494	CG7029-RA,CG7029-RB,CG7029-RC,CG7029-RD,	FBgn0039026,	CG7029,	1	.
CG2534-RA	CGTTAGCTCTACATAACAAAACACACACATAGATATATAGGTCATGTTATATATGTCGGAACACTTTA	68	-	chr3R	999369	999437	999369..999437	CG42312-RC,CG42312-RE,	FBgn0259212,	cno,	1	.
CG11109-RA	TACTGCTTGCCAAACCTACCCGAGATGTTGTGCATTGATCCGCTGGACTCACAGCTCACCAAAGC	65	+	chr3L	22865687	22865752	22865687..22865752	CG11109-RB,CG11109-RA,	FBgn0037200,	CG11109,	1	.
CG31081-RA	AGGATGCCCCATCTGAAGAGTATCCAGCTGGCCAAGTAGGTTATCTGCCATCCCCTCAACAGTCC	65	+	chr3R	22461286	22461351	22461286..22461351	CG31081-RA,	FBgn0051081,	TwdlR,	1	.
CG7145-RA	AGCATTTAAACGCATTACGGGCTACATTGAGCATGCCAAAAAATCCCCGAACCTCGAGATTCTCGCCG	68	-	chr3L	21831084	21831152	21831084..21831152	CG7145-RA,CG7145-RB,CG7145-RD,CG7145-RE,	FBgn0037138,	P5CDh1,	1	.
CG13887-RB	TAGACCGTCCGTCCCGAATCCGTAGACTTAGCAGCTAATTTGGACGCATTTCTGCTTACAGGCGGCAG	68	+	chr3L	837987	838055	837987..838055	CG13887-RB,	FBgn0035165,	CG13887,	1	.
CG13601-RA	AGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAGTCCAATGCCAAATCGAGCCCCTTCTTCAGGAAG	68	-	chr3R	19753173	19753241	19753173..19753241	CG13601-RA,	FBgn0039126,	CG13601,	1	.
CG4270-RA	ACAGACCCAATCCCAAGTACGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGACCGGTGATCT	67	+	chr2L	2263843	2263910	2263843..2263910	CG4270-RB,CG4270-RA,	FBgn0031407,	CG4270,	1	.
CG4323-RA	CGATTGACTTGATCAAGGTGCTTATCCAAACTCAGGCGGAGAAGCTATCGGTATTCCAGACCACCCGCA	69	-	chr3R	16326862	16326931	16326862..16326931	CG4323-RA,CG4323-RB,	FBgn0038797,	Dic2,	1	.
CG17800-RE	CCACGACATGAGCAACTCCTCATTCAACGACTCCAAGGAGAGTAATGAGATCTCAGAGGCAGAGTGCGA	69	-	chr2R	3210096	3210165	3210096..3210165	CG17800-RBG,CG17800-RBH,CG17800-RBB,CG17800-RBC,CG17800-RBD,CG17800-RBE,CG17800-RBF,CG17800-RAW,CG17800-RAX,CG17800-RAY,CG17800-RAZ,CG17800-RBA,CG17800-RAQ,CG17800-RAR,CG17800-RAS,CG17800-RAT,CG17800-RAU,CG17800-RAV,CG17800-RAL,CG17800-RA,CG17800-RC,CG17800-RD,CG17800-RE,CG17800-RAM,CG17800-RAN,CG17800-RAO,CG17800-RF,CG17800-RG,CG17800-RH,CG17800-RI,CG17800-RJ,CG17800-RL,CG17800-RM,CG17800-RO,CG17800-RR,CG17800-RT,CG17800-RV,CG17800-RW,CG17800-RX,CG17800-RY,CG17800-RZ,CG17800-RAA,CG17800-RAB,CG17800-RAC,CG17800-RAD,CG17800-RAE,CG17800-RAF,CG17800-RAG,CG17800-RAH,CG17800-RAI,CG17800-RAJ,CG17800-RAK,CG17800-RAP,CG17800-RK,CG17800-RN,CG17800-RP,CG17800-RQ,CG17800-RS,CG17800-RU,CG17800-RBI,CG17800-RBJ,CG17800-RBK,CG17800-RBL,CG17800-RBM,CG17800-RBN,CG17800-RBO,CG17800-RBP,CG17800-RBQ,CG17800-RBR,CG17800-RBS,CG17800-RBT,CG17800-RBU,CG17800-RBV,CG17800-RBW,	FBgn0033159,	Dscam,	1	.
CG11276-RA	GAGCGTCATCCCGGTTCCTTCGACATTGTGCACATTAAGGACTCGCAAGGTCATGTGTTCGCCAC	65	+	chr3L	13036735	13036800	13036735..13036800	CG11276-RA,CG11276-RB,	FBgn0011284,	RpS4,	1	.
CG32809-RB	TGCATCCTGTCTAACGAGATGGAGAAAGTGGTGCGAGAAGAAAAGTTCCTCAAAGAAGAGCCCGAC	66	-	chrX	1575667	1575733	1575667..1575733	CG32809-RD,CG32809-RB,CG32809-RE,CG32809-RF,CG32809-RG,CG32809-RH,CG14797-RC	FBgn0023531,FBgn0029587	CG32809,CG14797	2	.
CG18001-RA	TTCGAGGTTCCTTTACACCCTTGTCGTACAGGATAAAGAAAAGGCTGACAAAATTAAGCAGTCTT	65	-	chr2R	403646	403711	403646..403711	CG18001-RA,	FBgn0040007,	RpL38,	1	.
CG17757-RA	GGAGCTCTGAACCGGAATCGCTGTGCAACAACTGGCGCGGCTGGAAGAAGCCCGCTGCAGGCAGC	65	+	chrX	18759530	18759595	18759530..18759595	CG34401-RA,	FBgn0085430,	CG34401,	1	.
CG31238-RA	GTGTGGCTCTTGGCTTTTAGACCCTGTTATCACGCCGGACAAGGCTATCAAGCTGGGCAAACGTG	65	+	chr3R	20837328	20837393	20837328..20837393				0	no match
CG14323-RA	GGCGGCTATTGGTCCTCAACCAGGTTACTACGCTACACCTGCAGGATTTTACACCATGCCTCTGAATCA	69	-	chr3R	13447496	13447565	13447496..13447565	CG14323-RA,	FBgn0038529,	CG14323,	1	.
CG17944-RB	CGACGGCAGCAAATCAACGTCCCCGAACATCAACGTCCCGACGATTGAAGTTTCTGAGAAAAATGGCGT	69	-	chr3R	3187548	3187617	3187548..3187617	CG17944-RA,CG17944-RB,	FBgn0037500,	CG17944,	1	.
CG3645-RB	TACGGCAATACCTAGCCACTGCAAATCAGCTCGTGCAATTCCAAGCCGTCGTGCAACAAGTACGG	65	-	chr2L	253294	253359	253294..253359	CG3645-RA,CG3645-RB,	FBgn0031238,	CG3645,	1	.
CG5373-RA	GCTCTGGTGGAGCAGATTCATCGGTTCACCCAATACTGGCGGAAGTAGAGGACATTGCTTGCACAAGAA	69	+	chr2R	19451287	19451356	19451287..19451356	CG5373-RA,	FBgn0015277,	Pi3K59F,	1	.
CG17924-RA	GATACGTTGCGGTTGTCCTTCAGGCCATTCCCGTCGTCCCAGAAGTAGTACTTGTACCACCTGGT	65	+	chr3R	20055251	20055378	20055251..20055305,20055367..20055378				0	no match
CG18367-RA	CGAATGTCATCAAGTCATGGCTGAGACACTTCGAGAGCACAGGATCCTCGCAAGGAGGTTGTGGAGGAT	69	+	chr2R	15524288	15524357	15524288..15524357	CG18367-RA,	FBgn0034460,	CG18367,	1	.
CG13457-RB	CGCAACCGCAGACGATTCACATGCGAATACCTCCGTTTAATGGTTGTCCCTGCATGTACCAGACCTACT	69	-	chr3L	15121209	15121278	15121209..15121278	CG13457-RA,CG13457-RB,	FBgn0036482,	CG13457,	1	.
CG5717-RA	ACGATTGAGTCCGTATCCCTCCACTTTCTTAGGCTTAAGATTCAAACTGATTTGTTGTCGTTACTGGGT	69	-	chr3L	2269903	2269972	2269903..2269972	CG5717-RA,	FBgn0041709,	yellow-g,	1	.
CG31362-RA	TAAGCAGTTGATGTTCCTTAATTCTGAGGGGTTTCTTCAATAAACGATTATAGCAAGCAACTCAA	65	+	chr3R	25748758	25748823	25748758..25748823	CG31362-RA,	FBgn0003357,	Jon99Ciii,	1	.
CG9806-RA	ACACATTGCAGGAGGAATCGGACAACCAGATGAGCTTGCGTCAGGACATCAAAGTGAGCCAGCTG	65	-	chrX	10519563	10519628	10519563..10519628	CG9806-RA,	FBgn0030222,	CG9806,	1	.
CG3989-RA	TTTGGGTGGCCGAACAACTGGCTGATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGG	67	-	chrX	12652547	12652614	12652547..12652614	CG3989-RA,	FBgn0020513,	ade5,	1	.
CG6945-RA	GCCACCCGCAAATCAGGCTCATACTCAGAACCAGAACCTAAGTCACAGTGGTAATGGCAGTTCAAGCGG	69	-	chr3L	15084679	15084748	15084679..15084748	CG6945-RA,	FBgn0036476,	CG6945,	1	.
CG18519-RB	TGGCTTCAAAGCTAAGGAGACCTGCCAGATTTGTCCAGACCATAGAGTCCATGATGGAGACCATTGGCA	69	-	chr3R	11365005	11365074	11365005..11365074	CG18519-RA,CG18519-RB,	FBgn0038348,	CG18519,	1	.
CG4215-RB	GGTGGACTCCATTCTTGGAAGAGTGGGAGCTAGTGACAACATCATCAAGGGTTTGAGCACATTTATGGT	69	+	chr2L	14364505	14364574	14364505..14364574	CG4215-RA,CG4215-RC,	FBgn0015546,	spel1,	1	.
CG32386-RA	ACCCTGCCTGCTGATGATGGACAATGTGTTGGAGGATGTGGTACACCATGATTCGCATTCGCACAACAT	69	-	chr3L	7138519	7138588	7138519..7138588	CG42278-RB,CG42278-RC,	FBgn0259173,	corn,	1	.
CG33352-RA	AGTCTGCGCACAACTCCCCCCTCAAAGAGGACCTGACCGTGTACTACGACTCCTACTTGGATCTG	65	-	chr2R	2816715	2816780	2816715..2816780	CG33558-RF,CG33558-RG,CG33558-RB,CG33558-RC,CG33558-RH,CG33558-RI,	FBgn0053558,	mim,	1	.
CG5321-RA	GGGTGCAGAGTTTCAGGATATTGCCCAGCACTTTAGCTACGATGAGGTGATGTCCCAGGATTCGGTGCT	69	+	chrX	14574052	14574121	14574052..14574121	CG5321-RB,	FBgn0030575,	CG5321,	1	.
CG17870-RA	ACTGGCGTTGAGCTCTCAAATGAGGAAAGAAATCTGCTCTCCGTTGCCTACAAAAATGTGGTCGGTGCC	69	+	chr2R	5992261	5992330	5992261..5992330	CG17870-RD,CG17870-RE,CG17870-RB,CG17870-RF,CG17870-RH,CG17870-RC,CG17870-RG,CG17870-RA,CG17870-RI,CG17870-RJ,	FBgn0004907,	14-3-3zeta,	1	.
CG8092-RB	ATGTGACCAAGTTTCCCTACACTGGTGGCTATGTGTGGATCAGCGAATGTTGCCCCTACCGCTTC	65	-	chr2R	11099983	11100048	11099983..11100048	CG8092-RA,CG8092-RB,	FBgn0033998,	row,	1	.
CG4771-RA	GCGTGGTTTGTCAAAACTGGACAGACACTTTCTGCAAGCTGTGCAAAATGCCCTTCTGCAATGCCTCCT	69	-	chr3R	18570262	18570331	18570262..18570331	CG4771-RA,	FBgn0263143,	vret,	1	.
CG10367-RA	GTGATGATCCGCTGGAATCCACACCAGATGCCAGTCAGTGGAGCTATGACCAGGACTAGTGCAAGC	66	+	chr3R	19576540	19576606	19576540..19576606	CG10367-RA,CG10367-RB,CG10367-RC,	FBgn0001205,	Hmgcr,	1	.
CG12125-RA	GCTCCGAGCGAGAATCCAGCTGAAATACCTCCGATTGCATGGGTAAAGTGGATCCAGGTGACAGACG	67	-	chrX	8328378	8328445	8328378..8328445	CG12125-RA,	FBgn0030037,	CG12125,	1	.
CG7490-RA	GGCGTTTACCCACTAAGACCCTTTGTTATGTTTTCTATGTGCAAATTATTGCCGCGGTTTGACGGACCC	69	+	chr3L	22070474	22070543	22070474..22070543	CG7490-RA,	FBgn0000100,	RpLP0,	1	.
CG5765-RA	TGGAGGACCAGACCAACGTGATCATGGGTTACAACCTACAGTACACCGGATGTCTGAGAACAGCACAAA	69	-	chr2R	13939305	13939374	13939305..13939374	CG5765-RA,	FBgn0034294,	Muc55B,	1	.
CG6643-RA	CTTCGCGATCCCAGCAATATCCCCGATCCGTATGTTAAGCTGTATCTGTTGCCTGGACGCACCAAGGA	68	+	chr3R	20381453	20381521	20381453..20381521	CG6643-RA,CG6643-RB,CG6643-RC,	FBgn0039208,	Esyt2,	1	.
CG17381-RA	GCCAATGTCGATGGGTTCCTTAAGTCGCATGCACGAGATGTCCTATCCGGTTAATCAGGCCAGTTGGT	68	+	chr3R	19310342	19310410	19310342..19310410	CG17381-RB,	FBgn0039079,	Ir94g,	1	.
CG14450-RA	GGCACTTCTCCTCAGCTTAGCCTTTACTCGTCTCGTGCTTCAGCAAGATCCGCAAAGCATTGCATCTGT	69	-	chr3L	22719686	22719755	22719686..22719755	CG14450-RA,	FBgn0037184,	CG14450,	1	.
CG30437-RC	CAACTGGCTATCCTGCGTTACGCTCGTGGACCTTATCAGCCAGCATCTTCTCCGCCAACATACGATGT	68	+	chr2R	1327172	1327240	1327172..1327240	CG42345-RA,CG42345-RD,CG32838-RA,CG42345-RF,	FBgn0259247,	CG42345,	1	.
CG11349-RA	TCGATCCAACTACCAGGGTCTCAATGTGCTGAATGGAAACGTTTTCGGACAACCCCATCTCCAGGGA	67	+	chr3L	4474606	4474673	4474606..4474673	CG11349-RB,	FBgn0035550,	CG11349,	1	.
CG10858-RA	GGCACACTTCCTTTTCGGCGTGTCACTATTGTGGATTGTGGGTTTGTGCCCCTCATAGCCAGATGA	66	-	chr3L	3748524	3748590	3748524..3748590				0	no match
CG15013-RB	ATCCCACAATCCGCCACTTTCAAATGGTTTCCTACTTTACCACTACGCTCTATCCTTCATATGTTTCCC	69	-	chr3L	4294280	4294349	4294280..4294349	CG15013-RB,CG15013-RA,CG15013-RC,	FBgn0066365,	dyl,	1	.
CG2736-RA	AGGAGCGTTACAACGGCCTTGATACCTTCCGCTACACTCTGCTTCAGTCACATCAAAAGCCTCCCG	66	-	chr2R	20861773	20861839	20861773..20861839	CG2736-RA,	FBgn0035090,	CG2736,	1	.
CG11006-RB	GCCCACACATAAGTTGGCCAACAATCATTTTCATCGGTACACTGATGTTAAGCCAAGGGAGGAGCGG	67	+	chr3L	12805387	12805454	12805387..12805454	CG11006-RA,CG11006-RC,CG11006-RE,CG11006-RB,	FBgn0262714,	Sap130,	1	.
CG3226-RA	GACGGTGACTCCAAGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGGATAAGGCGAAG	66	-	chrX	6547306	6547372	6547306..6547372	CG3226-RA,	FBgn0029882,	CG3226,	1	.
CG10233-RA	ACGCACGGCTTTCCCAGAAACGAGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGT	66	-	chr3R	1062189	1062255	1062189..1062255	CG10233-RA,	FBgn0087005,	rtp,	1	.
CG1944-RA	TTCGATTCCCATCATGGGTCGTCAGACACTCCAGGAAACGGAACTAGAGAATGGCCTAATCCTGCCG	67	+	chr2R	5126693	5126760	5126693..5126760	CG1944-RA,	FBgn0033395,	Cyp4p2,	1	.
CG32259-RB	CGGACACCACTGAGGATTCCAACGCGAAGAAGAGTTTGCAAATGGATTCCGATTCATCAGACGTGTCGA	69	+	chr3L	4069727	4069796	4069727..4069796	CG32259-RC,CG32259-RD,	FBgn0052259,	CG32259,	1	.
CG15399-RA	GGGCAAGACTAGTTTGACCAATTTGATGGCCACTACGGAAATTACGCCCACTCCAGACTCGCGAACCG	68	-	chr2L	2771533	2771601	2771533..2771601	CG15399-RA,	FBgn0031460,	CG15399,	1	.
CG3594-RA	GCAGATAACCAGTGACCAGCTGAGTTCACTGCTTCGAGGAGCCTCCAAAACCAACAGACACGTCCTGTA	69	+	chr2R	20668761	20668830	20668761..20668830	CG3594-RA,	FBgn0035063,	Eap,	1	.
CG3541-RB	GCCCCCCCTCCTAAGCGTGTTTCTACATCCCTGACTAACCCCATTCCCAGAACAATCTGTCGAACTAAC	69	+	chr2R	20484868	20484937	20484868..20484937	CG3541-RB,CG3541-RD,	FBgn0020521,	pio,	1	.
CG6407-RA	GCGTGGCGTTAAGAGAAAACGCGAGGAGATCAACAAGAATCGCATGCATTCCGATGACACGAATGCTTT	69	-	chrX	18396756	18396825	18396756..18396825	CG6407-RA,	FBgn0010194,	Wnt5,	1	.
CG3200-RA	GCTTTCGCCTCATAACCTTCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAG	65	-	chr3L	606419	606484	606419..606484	CG3200-RA,	FBgn0016715,	Reg-2,	1	.
CG11454-RA	CAAGCAGCTACCTGCCTACAACCAAAGTCGTCTGCGCAATCAGTTCATGATGGAGGCTCTACCGC	65	+	chr2L	143817	143882	143817..143882	CG11454-RA,	FBgn0031224,	CG11454,	1	.
CG17704-RE	ATTATAGAGAGAGGTCCTGCACAAAATCCGGGGATTTAAGAATCCACCATATGTAGTGCACCGTT	65	-	chr2R	577924	577989	577924..577989				0	no match
CG1810-RA	CCGTCTCCATGGACAGGGAGAACATAAAGCGGCTAAGCGAGATACCGTATCGTGTGTCGTGGAAGGC	67	-	chrX	14135561	14135628	14135561..14135628	CG1810-RA,	FBgn0030556,	mRNA-cap,	1	.
CG14907-RA	GCCTAAACTGCCCGACCTGGAGAGTCTAAGGGATTTCTGCGATCAGGTGATTAAGGGGATAGCCGAGGA	69	-	chr3R	12477514	12477583	12477514..12477583	CG14907-RA,CG14907-RB,CG14906-RB,	FBgn0038455,FBgn0015351,	CG14907,CG14906,	2	.
CG4393-RA	AGTCCACCAAGAAGTCCATACAAAAACTGAAGACCTCAGCTGATGGTGAAGTCAAATCGGGGTCACC	67	-	chr3R	19203765	19203832	19203765..19203832	CG4393-RB,	FBgn0039075,	CG4393,	1	.
CG14694-RA	GGGCAAGCTAGTTGCGGGAATCCTGGCTCAGATGGTCATTGGAATGAGGTGGATGAACTACAAGCAACT	69	-	chr3R	6684970	6685039	6684970..6685039	CG14694-RA,	FBgn0037845,	CG14694,	1	.
CG10863-RA	ACTGTGGAACGGTCAAGATGTCCAGCAAAATTCCCTACGTAAAGCACAACAACGGCACCCAAATC	65	-	chr3L	3942384	3942449	3942384..3942449	CG10863-RA,	FBgn0027552,	CG10863,	1	.
CG7642-RA	AGGAACTCATGTACTCACCACAAGGCATGCTTTACTCCAGAGGTCCGGGCATGTATAAGCTGCCA	65	+	chr3R	8863221	8863286	8863221..8863286	CG7642-RA,	FBgn0003308,	ry,	1	.
CG3427-RA	CTGCAAGGAGTACCAGAACCTAAACGCCTTCTTCGCTGTGGTAATGGGTCTGTCCAACATGGCGG	65	-	chr2R	2650623	2650688	2650623..2650688	CG34392-RC,CG34392-RD,	FBgn0085421,	Epac,	1	.
CG5460-RB	TGGCCACGCCAAAACTGACTGATAGTAGTACCGACCAAATGTCTGCAACGTCCAGTCATCGCACAGC	67	+	chr3R	16452135	16452202	16452135..16452202	CG5460-RA,CG5460-RB,CG5460-RD,CG5460-RC,	FBgn0001169,	H,	1	.
CG7970-RA	GTGCGCTTCCGAAGATTCTTCCTGTTCCTGTCCGAGCGACTGGTCTATGCTCCGATTTACCAGGC	65	+	chr3L	1653479	1653544	1653479..1653544	CG7970-RA,	FBgn0035252,	CG7970,	1	.
CG30081-RA	GGGCTGGTGTGTCTTGGGAATTGGTTGGATACTGTCAGCTCTGGTTTTCTCTTGTGAATACTGGCACCT	69	+	chr2R	11097197	11097266	11097197..11097266	CG30081-RA,	FBgn0050081,	Ir51b,	1	.
CG17998-RA	CGTAGACGTCGACACATAGCACAAATTGCGCACAGTTACCCCGGATCGGAAGAGTTCAGCAGGAGCATA	69	+	chr3R	27282229	27282298	27282229..27282298	CG17998-RA,	FBgn0261988,	Gprk2,	1	.
CG3466-RA	TTTGTCAAGAAGAACCAGCGCAAGTACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGC	65	+	chrX	2071194	2071259	2071194..2071259	CG3466-RA,	FBgn0011576,	Cyp4d2,	1	.
CG3612-RA	GGCGATGTGTCCGCCTACATTCCAACCAACGTCATCTCGATTACCGACGGACAGATCTTCTTGGAGACC	69	+	chr2R	18688545	18688614	18688545..18688614	CG3612-RA,	FBgn0011211,	blw,	1	.
CG13634-RA	GCTGCATCGAAATGGACAAGCCAATCCCTTCTCCGATTCAAGCAGTGCACTAGAGCTGGAGGATTTGCT	69	-	chr3R	20615077	20615146	20615077..20615146	CG13634-RA,	FBgn0039224,	CG13634,	1	.
CG33148-RB	GCAAATCTGCCTCGGAGTTGAATGGTCACGATTGCCATCTCAGTGAATCACCGCACATATCACCGAA	67	+	chr2R	14655938	14656005	14655938..14656005	CG15078-RA,	FBgn0034389,	Mctp,	1	.
CR18775-RA	CTATACTGTTTAGGGCTACTACTTCCGACTACTACAAAACCATTTCAATTGCCCTGTGCCTAACT	65	+	chr3L	6141077	6141475	6141077..6141093,6141426..6141475	CR18775-RA,	FBgn0020646,	Lcp65APsi,	1	.
CG11576-RA	CAGCCTGGACTTTGCTGGTAGGGATTGTGAGCTACACGAAACTGGGAATCACCACGGTTATGCGG	65	-	chr3R	27632966	27633031	27632966..27633031	CG11576-RA,	FBgn0039882,	CG11576,	1	.
CG14756-RA	GCTGGACACTCCCACCTACAAATGCAGCTTTAAAACTCATTAAAACAGCAGCGAAAATACTAATAAATA	69	-	chr2R	4092405	4092474	4092405..4092474	CG14756-RA,	FBgn0033275,	CG14756,	1	.
CG2182-RA	TCTAGCGCGATTTCGTCACCAGAAGGCTCGGAAGTGTCTTGCTCGGATGGACTGTGTAATCACGACG	67	-	chr3R	1482603	1482670	1482603..1482670	CG2182-RA,CG2182-RB,	FBgn0037360,	CG2182,	1	.
CG5310-RA	TCCGAGCCCTGATCTCCCAGAACTTCACCATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTAT	69	+	chrX	14477849	14477918	14477849..14477918	CG5310-RA,	FBgn0030573,	nmdyn-D6,	1	.
CG11233-RA	TTGATTGATTATGCGAACTGTCTGCGCGAACTTGTAACTAGATTAATGAACTTTTTGCAGTGGAT	65	-	chrX	20752176	20752241	20752176..20752241				0	no match
CG7593-RA	TTAGTCGAATTGCCATTTTTACAAAATTTTAAGCAAACAATGCGGAATCAGGACGATCTAAGTCAGGGC	69	-	chr3R	25550558	25550627	25550558..25550627	CG7593-RA,	FBgn0039687,	CG7593,	1	.
CG6538-RA	GCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATTGTGCAAAAGCTAGAGTGCCGACCCATCGCCG	68	-	chr3R	6593006	6593074	6593006..6593074	CG6538-RA,	FBgn0010421,	TfIIFbeta,	1	.
CG32792-RB	AGTTCCCTATTCGCATCGGAATATAAGTCTGCCAGAGGGATTCCATGCAGTCAATTGGCATGCCGAG	67	+	chrX	3464698	3464765	3464698..3464765	CG32792-RG,CG32792-RH,	FBgn0052792,	CG32792,	1	.
CG4859-RA	CGGGCAGTGCATTTGTGAACCTTAGGATCAACGCTAGCCACTCGAGTAAAGTTTCCAAAATTTTACTGC	69	-	chr2R	20559570	20559639	20559570..20559639	CG4859-RC,CG4859-RE,CG4859-RH,CG4859-RI,CG4859-RJ,CG4859-RK,CG4859-RL,	FBgn0035049,	Mmp1,	1	.
CG10752-RA	ATCTACAAGTGCCAAGTGTTCGTACTCCGCATCTACTGCAAGCTGTTTACCAACAACCTCAAGCGGGGT	69	-	chr3L	12947346	12947415	12947346..12947415	CG10752-RA,	FBgn0036325,	CG10752,	1	.
CG7794-RA	AATAGGATCATCGCACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTTTGGTGGCGGATCGAC	65	+	chr3R	13850337	13850402	13850337..13850402	CG7794-RA,	FBgn0038565,	CG7794,	1	.
CG33324-RA	TCTGCGAAAGAAACTGGGAGTACGACTGTGATGAACTGCTGGCCTACTCCAACTCCAGTGCACCG	65	+	chr3R	2272853	2272918	2272853..2272918	CG42803-RD,CG42803-RE,	FBgn0261972,	gpp,	1	.
CG7018-RA	ATAAACCCGTAAGCCCTAACCACAATGAATAGAAACCAACCCCCAGCTAAATATTTTATGTGTGCGCGA	69	+	chr3L	6116046	6116115	6116046..6116115	CG7018-RA,CG7018-RB,CG7018-RC,	FBgn0005658,	Ets65A,	1	.
CG6544-RA	GCCCGTGTCACAAATCCTGTCCGTCATATTGCCAAGGAAGTTCACAATATTTCGCACTACCCCAGGCCA	69	-	chr3R	6597074	6597143	6597074..6597143	CG6544-RA,CG6544-RE,CG6544-RF,CG6544-RG,	FBgn0020439,	fau,	1	.
CG7540-RA	CCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAATCTTCTGCTTCACCATGTACCGAGGAGCCT	69	+	chr3L	21504232	21504301	21504232..21504301	CG7540-RA,CG7540-RB,	FBgn0037092,	M6,	1	.
CG10564-RA	CCAGATCGAGACGACGATATCGAAGAGCCACAACGATGCGTTATAGCCGAGTACGCGCACTCACTGG	67	-	chr3L	21130185	21130252	21130185..21130252	CG10564-RB,CG10564-RC,	FBgn0024150,	Ac78C,	1	.
CG15067-RA	GGAGGAATCATCTGTAAACCAATATTCGAATTTTTTCTTATAGTCTCTATAAATGATTGCGATTTAAAT	69	-	chr2R	14272416	14272485	14272416..14272485	CG15067-RA,	FBgn0034331,	CG15067,	1	.
CG17816-RA	GCCAAATCAGCATTAAGCGCTAATCAGGCTCATGCTAATCAATCACAATCATCACATGCCAAGAGCGGT	69	-	chr3R	3687275	3687344	3687275..3687344	CG17816-RD,CG17816-RE,CG17816-RG,CG17816-RH,	FBgn0037525,	CG17816,	1	.
CG31410-RA	TGCGTTGTGTACAAAGGAACCATAGCAGTCATGGAGGTGCACTTCCTGGGCAGTAAGTTTCGGCCATC	68	+	chr3R	5879540	5879608	5879540..5879608				0	no match
CG18660-RC	ACCGGTGCCAAGTTCCGCCACGGCCTGTTACAGCTAATGATACACACGATAGATCCACTACACGATGG	68	-	chr2L	9727026	9727094	9727026..9727094	CG18660-RB,CG18660-RA,CG18660-RD,	FBgn0028704,	Nckx30C,	1	.
CG10667-RA	GTGCCGAGAACGGGAATTCGAGAACATTTACGCCTTTCTGGAGGGCAAGATCCAGGATCAGTGCG	65	-	chr2R	3411255	3411320	3411255..3411320	CG10667-RA,	FBgn0022772,	Orc1,	1	.
CG14825-RA	TCACGTCCTCACGCTCGTTACTCAATCTGGTGGTATCGTGGTTAAGATCCTGAGACGTGTGTCCCGCTT	69	+	chr3L	7120227	7120296	7120227..7120296	CG14825-RA,	FBgn0035741,	BBS1,	1	.
CG14545-RA	AGGAAGCCGTCTCATCATCGAGCGAAGATTCCATGGTGGAGAGCATTGAGACTACGATGGACTCCACGA	69	-	chr3R	21676474	21676543	21676474..21676543	CG14545-RA,	FBgn0040602,	CG14545,	1	.
CG5665-RA	GCCGTTGAGTATTTCGCCGAGAGTGCATATCCACACCAAGAGAAGAACTTTATGGGCAAGAAGTGCGCT	69	+	chr3L	20352668	20352737	20352668..20352737	CG5665-RB,CG5665-RC,	FBgn0036977,	CG5665,	1	.
CG31659-RA	GAGAAAGGCAGACATACTGAACGTGGAGCCAGAATTTGGGCGGTATGTTTTGGGCACAACAAGTACGG	68	-	chr2L	1359331	1359399	1359331..1359399	CG31659-RA,CG31659-RB,	FBgn0051659,	CG31659,	1	.
CG33273-RA	GACATGCTGAGGGTTGCCTGTCCCAATGGATTCAATTCAATGTTCGCCAAACGAGGCACCTTGGG	65	.	.	.	.	.	CG33273-RA,	FBgn0044048,	Ilp5,	1	.
CG6016-RA	ACGTTTAAGTCCTGTAACCACCCATTGGCAATCGATCCATCCCACGAAAGACAGCAGATCAAGTGCGA	68	-	chr2R	9374493	9374561	9374493..9374561	CG6016-RB,CG6016-RC,	FBgn0033844,	bbc,	1	.
CG31786-RA	AAAGAAGCGCAGAGTGAAATCAGGACGATGACGGAGCTAAGACGAACTAATGGCCTGCACAAGCA	65	-	chr2L	18210822	18210887	18210822..18210887	CG42750-RB,	FBgn0261804,	CG42750,	1	.
CG1444-RA	ACCAGGAACCACTAATCTCCATCATCAACATCATGGAGGAGAACAACTCGCAAGTGCTGAGCCTGCTG	68	+	chrX	7803372	7803440	7803372..7803440	CG1444-RA,	FBgn0029975,	CG1444,	1	.
CG32374-RA	CCGGTGTGTCCAGAAGGTGAAGCTTCCCTCCACGAGAACGAAGCGATTTCCTAAATGTTACCTGGCC	67	-	chr3L	7533689	7533756	7533689..7533756	CG32374-RA,	FBgn0052374,	CG32374,	1	.
CG32145-RA	CCACTGGGACGGAAAGAACGACATCATATTCTACACGGCCAACACAGAGGATCATCCCGAGCAGCTG	67	+	chr3L	14738727	14738794	14738727..14738794	CG42280-RE,CG32145-RA,CG32145-RB,	FBgn0259175,	ome,	1	.
CG15020-RA	AACCATGTCACTGGAGGAATCTGAAAGCAGTGACCAAGCGCGATACCTCCAACATGACAGCCACAAACA	69	+	chr3L	4425957	4426026	4425957..4426026	CG15020-RA,	FBgn0035543,	CG15020,	1	.
CG5674-RA	CGCCTGTAGTTCTAAGCTCAACCCTCTAGCCAGCTAAACGCATCCGAAAGTTTGAGGGCACACACACCT	69	+	chr2L	17973401	17973470	17973401..17973470	CG5674-RA,CG5674-RB,CG5674-RD,	FBgn0032656,	CG5674,	1	.
CG6455-RA	GGCCTGCCCATCTACTTCCTGTCCTATCTGCAATCGCTGTTCATCTTGCGACCCGATAATCCCATATCC	69	-	chr3R	17845896	17845965	17845896..17845965	CG6455-RC,	FBgn0019960,	CG6455,	1	.
CG31559-RA	AGTATGCTGACGACCAATACTACAGCTTTCACATCAACGAGCACGAGAACTTCGGTGCGAGAAGC	65	-	chr3R	1982124	1982189	1982124..1982189	CG31559-RA,	FBgn0051559,	CG31559,	1	.
CG14380-RA	ACATTTGCCTGATTTACGCCATGAGCACCTGGTTATACCACTCGAATTATTCCAGGACCCGTCTGCACA	69	+	chr3R	9014528	9014597	9014528..9014597	CG14380-RB,	FBgn0038124,	CG14380,	1	.
CG9969-RA	GAAGAGGCGCAACTATCGCAGCATCAGGGAGATGATCCGACTCTCCTATACGGTGGGCTTCAACC	65	+	chr3L	2961772	2961837	2961772..2961837	CG9969-RA,CG9969-RB,	FBgn0035382,	Or63a,	1	.
CG9855-RA	TTGTGCTTGGTCGATTGATTCGCTGGGAGGATGCATTGTTGCGTCTTATTCGAAACCGCGGGACG	65	-	chr3R	222625	222690	222625..222690	CG9855-RA,	FBgn0037242,	CG9855,	1	.
CG5092-RA	TTTTGGTAGGTCAACCGATCCGGCATAGATCCCGTGCGACAACCGGCAATTGACTGAGCGAGATTAC	67	+	chr2L	13012923	13012990	13012923..13012990	CG5092-RA,	FBgn0021796,	Tor,	1	.
CG31950-RA	GACGCAGGAAGCTCCAGAAGTGGCTGGGTCGAGTTCTTCGGATCGTGATTACGGACGGACGCGTG	65	+	chr2L	2878713	2878778	2878713..2878778	CG31950-RA,	FBgn0051950,	CG31950,	1	.
CG4800-RA	TAAAAACGCTGACAAAAATGCCTGTCTTCGATCAGTGCGATTTTATATCTAATTTCTTTTTACCGGAGC	69	+	chr3R	7036734	7036803	7036734..7036803	CG4800-RA,	FBgn0037874,	Tctp,	1	.
CG18449-RA	AGGCGTTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACTAGCTGATACACGGCTTGTTT	69	-	chr2R	4254815	4254884	4254815..4254884	CG18449-RA,	FBgn0033285,	CG18449,	1	.
CG11018-RA	GGCTTGCCATTGGCTACAACCGATCTGGAGTCACTTCCAATCGTCTTGGCAGAGGATGTTCCGGTG	66	+	chr2R	15550178	15550244	15550178..15550244	CG11018-RA,	FBgn0034464,	CG11018,	1	.
CG3483-RA	AAACAAGTCAGCTCCACTCACAACTCACATTTCGGGCCTCAAATTCTCCAAAATGAACACCCTGCG	66	+	chr2R	20333023	20333089	20333023..20333089	CG3483-RA,	FBgn0035005,	CG3483,	1	.
CG32855-RA	AAGTCACACAGTACTCTAAGCATGGGCAGGACTAGGATGCAGGTGTACCAGTCCCCGGAATTGGC	65	-	chr3R	11905872	11905937	11905872..11905937	CG32855-RA,	FBgn0052855,	CG32855,	1	.
CG14869-RA	TCATCATAGGTCGTCGCTCAGATAAGCCCGTATTTGTGCCAACTCCGGTATGCAGTGATGGAAGATGCA	69	-	chr3R	11268523	11268592	11268523..11268592	CG14869-RB,CG14869-RA,	FBgn0038341,	CG14869,	1	.
CG8060-RA	GATCCACCGACTCAAGAACTGGTACCCATTGAAAGGAAGCCCCTGAAAGAGCAAACACCTCCGCC	65	-	chr2R	12204739	12204804	12204739..12204804	CG8060-RA,	FBgn0034113,	CG8060,	1	.
CG16727-RA	GCCCTCGATCTTCATCAGCGTTCTAATGTTCCTAGGTGCTCTACTCTGCCTGACCCTTCCCGAAACGC	68	+	chr3R	15440981	15441049	15440981..15441049	CG16727-RA,	FBgn0038719,	CG16727,	1	.
CR33345-RA	CTGACTTCTCCGGAGGCATGGCGCTACTTTGAGTATGGCATGTTTTGGATGGGATGGATGGCTCC	65	+	chr3R	23670852	23670917	23670852..23670917	CR33345-RA,	FBgn0067407,	Or98P,	1	.
CG2945-RB	GGCCTGTGGGCTACGATCTAAGCACCAATGATCGAATTTTTCCTGCTCTAGATCCTTCTCCCGTGGTGG	69	+	chrX	151030	151099	151030..151099	CG2945-RB,CG2945-RA,CG42376-RC,	FBgn0000316,FBgn0259722,	cin,CG42376,	2	.
CG7605-RA	ACGGCGATGATGGAAAGTTCAATGTGCATGATTTTGTGCGTGACAATACAAAGGCGCGCTCGGTT	65	+	chr3L	21327021	21327086	21327021..21327086	CG34410-RB,CG34410-RC,CG34410-RD,	FBgn0086913,	Rab26,	1	.
CG31125-RA	GCCTTCTACATACCCTACAGTGCCTCGAAATTCAAAGCCTTCAAGTAACCTCAAACAATAAAACT	65	-	chr3R	20479098	20479163	20479098..20479163	CG31125-RA,	FBgn0051125,	CG31125,	1	.
CG3651-RA	GGCGACGGACGGAAAGTAGTGTCAATCTCAAGCAGCTATTAATACAGGCCTCAAAGCAGCAGGGAAACC	69	+	chr2L	22123894	22123963	22123894..22123963	CG3651-RA,	FBgn0032974,	CG3651,	1	.
CG5403-RB	CGCATCACACCGCAGTAATACACATGCATATCCATTATGACCGCATCGTAGACATATTTAGACGTAAAA	69	+	chr2R	19542054	19542123	19542054..19542123	CG5403-RA,CG5403-RB,	FBgn0004795,	retn,	1	.
CG8968-RA	CCTCCCCTGATTCCATAGACAGCGTTATAAGTGCACCAAGATCGGCCAAAGTACCCTCGGGAAGTGAGG	69	+	chr3R	21805826	21805895	21805826..21805895	CG42261-RA,	FBgn0259146,	CG42261,	1	.
CG8818-RA	CCGCTAAATGAGCTGCAGAACGAACAGTTCCTCAGTCTGTTCCTCGACCAGAGCGATCCTGTGGACTCT	69	-	chr2R	8404962	8405031	8404962..8405031	CG8818-RA,	FBgn0033751,	CG8818,	1	.
CG4415-RA	TGCGCTGCCAATTTGGAAATTTTTTTGGAGAAGTTGTCCTCGCAAATCTGTGATCGCAAATCCCTCAGT	69	+	chr2L	1037291	1037360	1037291..1037360	CG4415-RA,CG4415-RB,	FBgn0031296,	CG4415,	1	.
CG9406-RA	TGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGCAAGAAACCACAACAACCACT	69	+	chr2R	17030626	17030695	17030626..17030695	CG9406-RA,	FBgn0034592,	CG9406,	1	.
CG32687-RA	TTCCCATTGGCTTCTTCACACGTTACCAATTTGAACTAGTTTGCTAAGTGATTACACGACCTGTTTGCT	69	-	chrX	10376546	10376615	10376546..10376615	CG32687-RA,	FBgn0052687,	CG32687,	1	.
CG8932-RA	TCTTCATGGGTTGGCTTAGTATTTCGGCCCAAATTGCCATTAACTCTGGGGAAATTCATCCCGAGGAAA	69	+	chr3R	21738017	21738086	21738017..21738086	CG8932-RA,	FBgn0250757,	CG42235,	1	.
CG5447-RA	ACAGGCATGTGAAGGAGAAGAGTCCGTTTCAGCAATTATCAAGCAAAAGTCAGCGCCATCAGAGTGCGT	69	+	chr3R	22279494	22279563	22279494..22279563	CG5447-RA,	FBgn0039427,	CG5447,	1	.
CG6966-RA	CTACGAGGGAACCGTACCAGCCACACTGTACGAGTTCATCGAGCTGCACTAGAGACGAGGATCGG	65	-	chr3R	10906906	10906971	10906906..10906971	CG6966-RB,	FBgn0038286,	CG6966,	1	.
CG4373-RA	CCATTCGCAAATACCCCGGGCTACCATTCCTCAATCGAGAGTGCACCGAAGATTATCCCGTACCTGGAA	69	-	chr2R	18540596	18540665	18540596..18540665	CG4373-RA,	FBgn0034756,	Cyp6d2,	1	.
CG30290-RA	CGCTGCTCTTTGCACCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGATCGACA	69	+	chr2R	17579991	17580060	17579991..17580060	CG30290-RA,CG42496-RA,	FBgn0050290,FBgn0260222,	Ppcdc,CG42496,	2	.
CG9536-RA	ACCCCCCATCAGTGTTCCCATTTTGTAATTACCGTTCGTGTGTTTCGTAGTGTCCTGTAGACTTACGCT	69	-	chr2L	6474632	6474701	6474632..6474701	CG9536-RA,	FBgn0031818,	CG9536,	1	.
CG30366-RA	AGACCGCTCCGAAAAAGAGAGTGCCTTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGA	69	-	chr2R	4251022	4251091	4251022..4251091	CG30366-RA,CG30366-RB,CG30363-RA,	FBgn0050366,FBgn0050363,	swif,cola,	2	.
CG12438-RA	GCTGCTCATTTGTGCCGTTCTAATTAGCACTGGATTTTATATGAACCCCTTCAAACTGGCCGTTGTGGG	69	+	chr2L	8752746	8752815	8752746..8752815	CG12438-RA,	FBgn0032065,	CG12438,	1	.
CG18094-RA	GCTGCGATGACTGCATGTTTGGAGTTCTTCCTGGTGATGAGCTCTATCCCAAAGAACCAGGCGCTTGTA	69	+	chr2L	19491387	19491456	19491387..19491456	CG18094-RA,	FBgn0032791,	CG18094,	1	.
CG12436-RA	CGTCGACGCCAAAGAAGTCCAACTGGGAGGTGATCGAACATTTCAATACGAGTGCCAAGGGAGGC	65	-	chr3L	16522756	16522821	16522756..16522821	CG42513-RB,CG43373-RC,	FBgn0263131,	CG43373,	1	.
CG32634-RA	AGTCCAGCAACGCTTCAAAAAGTCAACTTCCTACGTCTCCAAGTTGTGCGGTTGTCTTCAGCCTGCTCC	69	-	chrX	13276619	13276688	13276619..13276688	CG1987-RB,	FBgn0030479,	Rbp1-like,	1	.
CG12379-RA	CAGACCCGGAACATGAAGACCATTTCGAAGCTGGCATACCAACGCGGCGTTGTTATCGTGACCTG	65	-	chrX	15627431	15627496	15627431..15627496	CG12379-RB,CG8191-RA	FBgn0030676,FBgn0030675	CG12379,CG8191	2	.
CG8049-RB	TGTGCTGATGTGGGAGATCTTCACTTGCGGCAAGATGCCATACGGTCGCCTAAAGAATACCGAGGTTGT	69	-	chr2L	8260761	8260830	8260761..8260830	CG8049-RC,CG8049-RB,CG8049-RD,CG8049-RA,CG8049-RF,CG8049-RE,	FBgn0003502,	Btk29A,	1	.
CG10631-RA	CCTGTAATATCCTTGAGCGTATATGTGTATGTAGACTTGTAGATGGCCCAATATTAGTTGGAGGTTTTC	69	-	chr2L	19742840	19742909	19742840..19742909	CG10631-RA,	FBgn0032817,	CG10631,	1	.
CG13046-RA	GAGCCAGAGGAACCAGTACCAACAGAACCAGCAGTATCCCCAAGTGGCACGACAGTTTGCCGAGC	65	-	chr3L	16281143	16281208	16281143..16281208	CG13046-RB,	FBgn0036595,	CG13046,	1	.
CG12424-RB	ACTGAAAAGCTTTGGACAAACCATGTATACTTTTGTACTTTTCCTAAACTCTCCTCCCATTCCCGAAAC	69	+	chr2R	10867389	10867458	10867389..10867458	CG12424-RC,CG12424-RA,CG12424-RB,	FBgn0033987,	CG12424,	1	.
CG4455-RA	GCGCTCCATTCAATCCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCTGATTCGGGGT	69	+	chr2L	16353492	16353561	16353492..16353561	CG4455-RA,	FBgn0028506,	CG4455,	1	.
CG8920-RC	GGGCGACGATGGAGTAATTGCCTGTGATCAACTGAAAACTCTAAATCCGGAGTTAAGAAAGCTGCCCAA	69	+	chr2R	16212947	16213016	16212947..16213016	CG8920-RB,CG8920-RC,	FBgn0027529,	CG8920,	1	.
CG13871-RA	CCGACGACAACAGACGTATCAATCTGGAAGCCTTGAGCGTGGTAGTCAAGCCAATGTCCTCCTTTCCCA	69	+	chr2R	16206215	16206284	16206215..16206284	CG13871-RA,	FBgn0034502,	CG13871,	1	.
CG1894-RA	ACCGCCCTATATGCGCAAGGGATACGGAAAGTTGTTGATTGATCTGAGCTACGAGATCTCTCGCAGGGA	69	+	chr3R	24311311	24311380	24311311..24311380	CG1894-RA,	FBgn0039585,	CG1894,	1	.
CG10660-RA	AGTGGGACGATGGATCCGGTGAGGGTACGATAGATATACCGCTCCAGAGACTCGATCAGTTGGAGGACA	69	-	chr3L	12480078	12480147	12480078..12480147	CG10660-RA,	FBgn0036288,	CG10660,	1	.
CG18296-RA	GCGAGCACACGAGTTTTCTGGGCGAATTCTGTTCGGAGGAGAAAGGAGCAGATTTCAGTGGCGAATCGA	69	-	chr3L	4646003	4646072	4646003..4646072	CG42664-RB,CG43225-RC,CG43225-RD,CG43225-RE,	FBgn0262870,	axo,	1	.
CG5056-RA	GCAGACCACGTCGTAGATCCGAGAGTTGTCTGCAGGACTGCAAGCAAGAGGACTCCTTTGTTCCAGAAG	69	+	chr2L	10367056	10367125	10367056..10367125	CG5056-RA,	FBgn0032231,	CG5056,	1	.
CG6703-RA	CGCCAGCTATACGGTCACTTCTTCGATCTGACGATTGTGAACAACGATATTAGCGAGACGATTGCCACG	69	-	chr3R	17612470	17612539	17612470..17612539	CG6703-RB,CG6703-RA,CG6703-RD,CG6703-RE,CG6703-RF,CG6703-RG,	FBgn0013759,	CASK,	1	.
CG18662-RA	GGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCACGACAAGGAAAAGAAGTACATCAAGCT	69	+	chr2L	8981116	8981185	8981116..8981185	CG18662-RA,	FBgn0040963,	CG18662,	1	.
CG13913-RA	GAGGTGAAGCGCTTCAACGAACTCCATATTGACGTGGACCAGATGATAACCCGGGCAAGGGATGC	65	+	chr3L	1231046	1231111	1231046..1231111	CG13913-RA,	FBgn0260963,	mwh,	1	.
CG32679-RA	CTCCCTGCTGGATTTTCCTTTTATATTTGGTCCTTATCATTTTCACTTTTACTTTCGCACAAAACTATT	69	-	chrX	10261415	10261484	10261415..10261484	CG32679-RA,	FBgn0052679,	CG32679,	1	.
CG30264-RA	TCTCGCCGATCCTTTGATCAAGGCCCTCACTGAAATAGCCAACAAAAGACCCAGAGATCCCGTTGCCTA	69	+	chr2R	18715100	18715169	18715100..18715169	CG42284-RC,	FBgn0259179,	CG42284,	1	.
CG31878-RB	GCCGAGAATGCCTACGATCTTGAGTCTCGAGTTTACAACTCCAACTTGTTCGCCATGAATGTCCTGGCT	69	.	.	.	.	.				0	no match
CG30468-RA	GGGGTCCTCCCATCGAACCACGCCTGACCTCATTTGACGATGTAAAAAAGTCTAGGTACACGATGGCCA	69	+	chr2R	11392873	11392942	11392873..11392942	CG30468-RA,	FBgn0050468,	Ir52c,	1	.
CG7008-RA	GCGGATCCAAGCTAGAGTCGCTTATGAGCAAACTTCACGCCGATTTCCAGTCCAACCCACCCATC	65	-	chr3L	260448	260513	260448..260513	CG7008-RA,	FBgn0035121,	Tudor-SN,	1	.
CG11230-RA	ACACTCGTTGGTATTTCCGTGTCCTCTAAATGTTGCCTTTTCTTTTACATATTTCTCATACATTTTCAT	69	-	chrX	20780405	20780474	20780405..20780474				0	no match
CG32856-RA	TCGAGTCCTTCAAAAAGAGCAGGCTGAACTATTTGCTATCCAGAAGAAACTCGACCGAGTGCTCCCCGT	69	-	chr3R	11790823	11790892	11790823..11790892	CG32856-RA,CG32856-RB,	FBgn0052856,	CG32856,	1	.
CG10017-RA	TCTCCAGGATCAGGAGCGATTGCAGGATCGGGTTCATTGAATGGAAACGTGGTGCTGACCAAAATGGAA	69	+	chr2L	3691406	3691475	3691406..3691475	CG34340-RE,	FBgn0085369,	CG34340,	1	.
CG40064-RA	GCATTTTCCTGTGGGCTACAAGTACGTGTGCGATGAAATTCTGATGCCCATGTCAGGCGATGAATTACA	69	+	chr3LHet	41650	41719	41650..41719	CG40064-RC,CG40064-RD,	FBgn0058064,	ARY,	1	.
CG12499-RA	ACAGCAGGAGACGAATGTGGCTCAGGTGCTAGCCCTGATTGTTCGAGAGACTAGCGAGTACACCATTGA	69	-	chr3R	18267439	18267508	18267439..18267508	CG12499-RA,	FBgn0038968,	CG12499,	1	.
CG10701-RB	GCACTGGGTCTGAACATTTACGAGCAGGACGATAGGTTGACGCCGAAAATTGGTTTCCCATGGTCCGAG	69	-	chrX	8769353	8769422	8769353..8769422	CG10701-RA,CG10701-RC,CG10701-RE,CG10701-RF,CG10701-RG,CG10701-RH,CG10701-RI,CG10701-RJ,CG10701-RD,CG10701-RB,CG10701-RK,CG10701-RL,	FBgn0011661,	Moe,	1	.
CG7382-RA	GTCCGCTGGATCTTCCTTTGGCAACCTAGCCCTGATGTCCAATAGCCGGGATAAGTAGGCGGATC	65	-	chr2L	5518978	5519043	5518978..5519043	CG7382-RA,	FBgn0031708,	CG7382,	1	.
CG1362-RB	ATCTTCCTGGTAATGGATTTCTGCGAGCAGGACCTAGCCTCCGTGCTAGACAACATGTCGCAGCC	65	-	chr2R	5955579	5955644	5955579..5955644	CG1362-RA,	FBgn0013435,	cdc2rk,	1	.
CG13595-RA	GAGGAGGCGATTGACAGGGACCTGGTCCAGACATTCTACGACGTTGTTGGTCTGTCTAAGCCCCG	65	-	chr2R	20588358	20588423	20588358..20588423	CG33988-RA,	FBgn0053988,	CG33988,	1	.
CG7537-RB	CACCCTGGAGAGTCCCGTCTAGGATCGCTAGTGATCAGGTCCACGGATTGGATTAGGATCCCCAG	65	-	chrX	19062981	19063046	19062981..19063046	CG7537-RB,	FBgn0030989,	inx5,	1	.
CG9389-RA	GCAGAGCATAAACAGCAAGTTGACCAATACCGACATCACTTTTCACCCATCCAAGGTATTCGCCTCGAA	69	-	chr3L	21262798	21262867	21262798..21262867	CG9389-RA,	FBgn0037064,	CG9389,	1	.
CG12008-RC	CCGCAGAGGATTCCCTCCGGCAGGATCGACTCTACGAGGAAGTTTATCGAAATGGAGGCGCATAACAAT	69	+	chr3L	3366628	3366697	3366628..3366697	CG12008-RC,CG12008-RE,	FBgn0004167,	kst,	1	.
CG14368-RA	TTGGCACTAATTGAATGTAAATACACTTTTGCTTTGCTGTCAAGTCTTGTGTCTAGGCGACGTCG	65	-	chr3R	9451175	9451240	9451175..9451240				0	no match
CR40474-RA	TGAAGGATTTAGGGAAATTAATTTTTGGATTAACTTCCGCATTTTTTGTAAGAATGGGGGTCATCAAAA	69	.	.	.	.	.				0	no match
CG13473-RA	TGCAGAAGAAGGTCATCATTGTGGATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGA	65	+	chr3L	14721949	14722014	14721949..14722014	CG13473-RA,	FBgn0036442,	CG13473,	1	.
CG4767-RA	GAAATCCATGGTGGTTTTGGGCGTACCGGAATCCATAGCCAAGGAGTGCATTGAGAAGAGGGCCA	65	+	chr2L	15855342	15855407	15855342..15855407	CG4767-RA,	FBgn0028902,	Tektin-A,	1	.
CG10163-RA	AAGAGCACAGCCCAGATGATCATCGCAGTCTGCCTGATCTGTCAATCTTTGGCAGTGGAGGATAAGGAT	69	-	chr3L	6251767	6251836	6251767..6251836	CG10163-RA,	FBgn0035697,	CG10163,	1	.
CG14492-RA	CTGCTCAATGTGACCACCGATGGCTGTCAGTTACTCGCGAATCGCAATCAAGTGCCCCTTATGCG	65	-	chr2R	13781427	13781492	13781427..13781492	CG14492-RA,	FBgn0034283,	CG14492,	1	.
CG4521-RA	AGTTCGGGTCACATTAACACGTTCTAATTGGACACTCCGGTCAGTGTTGCGAAATGGAATGTGCAGCAT	69	+	chrX	16542254	16542323	16542254..16542323	CG4521-RA,	FBgn0030766,	mthl1,	1	.
CG40091-RA	ACAAAGCCACTAAACGACGAGGGAGTCTTCCAGTCTATGGCTGCAAACTTAAGATCCACACGGTGT	66	-	chrU	135590	135656	135590..135656				0	no match
CG5518-RA	ATAGTTCGAATAACTCCCATTCATCACTTCAGGCAACAGTTTAAGTCCACAACACAATATCTGCCACGA	69	+	chr3R	22770541	22770610	22770541..22770610	CG5518-RA,CG5518-RB,CG5518-RC,	FBgn0015541,	sda,	1	.
CG10598-RA	AACAAGGGCTGGTAAATGTGGAGCAAGCCAATATGGACCAACTATAAATAGTTCAAACTGCCAAACCGA	69	-	chrX	17119845	17119914	17119845..17119914	CG10598-RA,	FBgn0003057,	CG10598,	1	.
CG5482-RA	CAAACGCTCGGAGTTCACAACCGCCATTCACCTGTACAGACGTGCCCTCGACTTTCTGGACAATC	65	-	chr2R	14518345	14518410	14518345..14518410	CG5482-RA,	FBgn0034368,	CG5482,	1	.
CG13504-RA	CTTGATTATGGACACTCGGCTCCGGACTACAGCTACGCCCATGCCGCTCCTGCCATAACATATGC	65	-	chr2R	18018362	18018427	18018362..18018427	CG34205-RA,	FBgn0085234,	CG34205,	1	.
CG31962-RA	AGCATCAAGTTCGAGTGCAATCCCGGATTTTCTTTGCAGGGAAAGACGTGGCACCTTGGCAATGGAAAT	69	+	chr2L	4120506	4120575	4120506..4120575	CG31962-RA,	FBgn0020376,	Sr-CIII,	1	.
CG9212-RA	GTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCCTTCATACCCACAACGTCAGGCCCGA	69	-	chrX	15965780	15965849	15965780..15965849	CG9212-RB,CG9212-RA,CG9212-RC,	FBgn0030724,	Nipsnap,	1	.
CG8448-RC	TAGTTTTTGAACACAGCTGCCCTACAACAAAATTGCACCGGTGGAATAAAGCCAACACCATCGAGCACC	69	-	chr2R	12091359	12091428	12091359..12091428	CG8448-RD,CG8448-RB,CG8448-RC,CG8448-RA,CG8448-RE,CG8448-RF,CG8448-RG,	FBgn0034091,	mrj,	1	.
CG5164-RA	GTCGAGCTCTGGAATTGTACTCTATGGGACAGATCTCAGTCCCTGTGTGAGGACCGTCAAACTTACCCT	69	+	chr2R	14285938	14286007	14285938..14286007	CG5164-RA,	FBgn0034335,	GstE1,	1	.
CG6709-RA	TCATACCCACCGACATCGAGAACGAGTACTTTGACAGCATACTCCTCTCGCAGTTGGACGCCTGG	65	-	chr3L	9886688	9886753	9886688..9886753	CG14164-RB,CG6709-RA,CG6709-RB,	FBgn0036057,FBgn0036056,	CG14164,CG6709,	2	.
CG4909-RA	CGAACGATGTGTGGACGGTTGGTTCAAGGGAAAAAACTGGTTGGACATCACTGGAGTGTTCCCGGG	66	+	chr2R	13458152	13458218	13458152..13458218	CG4909-RA,	FBgn0040294,	POSH,	1	.
CG14071-RA	GCCGACTTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCGATTGCGCAA	65	-	chr2L	10888635	10888700	10888635..10888700	CG14071-RA,CG14071-RB,	FBgn0032312,	CG14071,	1	.
CG10722-RA	AGAACCAGACAATCGGAGGATCTCTTGGTAGAGCGGAATTCCATAAGCCATGTGGTAACCTTGCCGGGA	69	+	chr2L	20095160	20095229	20095160..20095229	CG10722-RB,CG10722-RA,	FBgn0032848,	nesd,	1	.
CG5180-RA	TAAAACGCGAGTGAAAGGGACCATGAACTTAGACCTGCGTTCGTACTCACGCCACTGGCTCACGG	65	+	chr3R	16384097	16384162	16384097..16384162	CG5180-RA,CG5180-RB,	FBgn0043457,	CG5180,	1	.
CG3039-RA	CCCCCGATATGCCGTTCGATATATCAATCACCCTGCCTATTAGTCCCCATCATTTTGTCCGAAACCCGA	69	-	chrX	6868372	6868441	6868372..6868441	CG3039-RA,CG3039-RB,	FBgn0004646,	ogre,	1	.
CG1937-RA	TTCCTTGAAGAGCGGAACAAGTCTGCAGCCACTAATGAACGCACGACAGCGGAATAGACGCCCTACAAT	69	+	chr3R	27600384	27600453	27600384..27600453	CG1937-RA,	FBgn0039875,	sip3,	1	.
CG9205-RA	CCGCCAAAATGGAGAGCAACTTGAACAGGATCATTCGTGAATCGGCCAAACTGAAACTCTGCGGTCAGC	69	+	chr3L	1035365	1035434	1035365..1035434	CG9205-RA,CG9205-RB,	FBgn0035181,	CG9205,	1	.
CG12794-RA	GCTTCGTCCACTACAGTGTCCTCCACTACAGAGTCCTCTACGGAATCCTCGACGGAATCATCCACAGCA	69	-	chrX	21267884	21267953	21267884..21267953	CG12794-RA,	FBgn0028583,	lcs,	1	.
CG5489-RA	GGTCTGCTAGGAATTTTGCCTCACTCCATCCGTGGAATGCTGTGCAACTACGAGAATATTCTGCCCGCC	69	-	chr2R	14508579	14508648	14508579..14508648	CG5489-RB,CG5489-RA,	FBgn0034366,	Atg7,	1	.
CG12677-RA	CCCAATTGCTGTGTTCTCGATATTGACTCAACGCGGATACTGCTTAAAATGGGTCAGAAATTTCGCCCA	69	+	chr2L	4434625	4434694	4434625..4434694	CG34178-RA,CG34178-RB,CG34177-RA,	FBgn0085207,FBgn0085206,	CG34178,CG34177,	2	.
CG8952-RA	GGGTCTCGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTATGAAATCGACACGGACAC	68	-	chrX	15659524	15659592	15659524..15659592	CG8952-RA,	FBgn0030688,	CG8952,	1	.
CG11162-RA	GGCAGCACAGTGGTCATTTTCATCGTATACTGGCTCTATGCGGGCATCTTCACCCTGATGGACATTACG	69	+	chrX	13571055	13571124	13571055..13571124	CG11162-RA,	FBgn0030509,	CG11162,	1	.
CG5929-RA	CGCTGCCGAATACGCAAAGCAGTACCAGGAGGTAGAAGCCACGAGAATATACAAGGGCAGCGTGC	65	-	chr2L	22189867	22189932	22189867..22189932	CG42352-RD,	FBgn0259683,	Ir40a,	1	.
CG8825-RA	TTTTTCGGTAAATGTCCAATTCTGCCCATACTTCTTGGATCGGAGTGCTAATTCTGTTTGCACCGCAGG	69	.	.	.	.	.	CG8825-RA,	FBgn0260817,	gkt,	1	.
CG8599-RA	ACGGATTCCGTGCGTTGTGTACCTCTTGACAAACTAACAACACAGAGTCGGACCAACGTGAACGGACGA	69	+	chr3R	9094278	9094347	9094278..9094347	CG8599-RA,CG8599-RB,	FBgn0003598,	Su(var)3-7,Su(var)3-7,	1	.
CG32950-RB	CGCCACCGATTAGCATAGGTCAGTCCAACGAAAGCCACCCCTAGTTCAAGATGAAGTTCCTGCCTCTGT	69	+	chr3R	22554432	22554501	22554432..22554501	CG14245-RA,	FBgn0039452,	CG14245,	1	.
CG12539-RA	ACTTGCAAATATTCACCTTTTCGCAAGTGACCCGCATTCTGATCGATGAGGCTACGAAATCCGCTTACG	69	-	chrX	14737838	14737907	14737838..14737907	CG12539-RA,	FBgn0030586,	CG12539,	1	.
CG9264-RB	GGGTGGGGTATTCCTGAGGGCCCTTTACCTCCTATACATCCCTTACAGACCCAAATATATGGCGCCCAG	69	+	chr2L	21079607	21079676	21079607..21079676	CG9264-RB,CG9264-RA,	FBgn0032911,	tadr,	1	.
CG13741-RA	AGGAGTCCCGAAGTGTCGCATTGCCTGAACGTGAAGGAGGAAGGGACCAACTGCAACGTTTTAACTAGA	69	-	chr2R	4980711	4980780	4980711..4980780	CG13741-RA,	FBgn0033374,	CG13741,	1	.
CG18144-RA	GCGAACCCAAAGTATAAACAATGCGTTTTCCTATCTGCGAGAAAAGATTCCCAACGTTCCTACAGATAC	69	-	chr2L	10294875	10294944	10294875..10294944	CG18144-RA,	FBgn0032209,	Hand,	1	.
CG8063-RA	TCCGGTTGTCTTTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGATACACCGGT	69	-	chr3R	8820469	8820538	8820469..8820538	CG8063-RA,	FBgn0038105,	yellow-f2,	1	.
CG5353-RA	GAAGATCACCAAGAACTCCTCTACCTACTGGGAGGGTAAGGCTGACGCTGAGACACTGCAACGCG	65	+	chr2L	12105420	12105485	12105420..12105485	CG5353-RB,CG5353-RA,CG5353-RC,	FBgn0027081,	Aats-thr,	1	.
CG5020-RA	GACCGCACTCCGTCAAGCCAACGATGCCCAAAAGACTGCTTATCTGGAGACTAAGGAACTGAGGC	65	+	chr2L	17408656	17408721	17408656..17408721	CG5020-RA,CG5020-RC,CG5020-RB,CG5020-RP,CG5020-RQ,CG5020-RH,CG5020-RL,	FBgn0020503,	CLIP-190,	1	.
CG8002-RA	GGCAGCAATGACTCCTCGTCAGCCCTAAGATATTCCACTGTGACCAAGAGCTTGTCGGCATCGATGG	67	-	chrX	19146888	19146955	19146888..19146955	CG8002-RA,	FBgn0031006,	rictor,	1	.
CG1371-RA	GACGCTGCGCATTGTGATGTACCGCAAAGGAAACTCGGATTCTCCTGTGTTCTCGCAACGTGTGG	65	-	chr2R	5959182	5959247	5959182..5959247	CG1371-RA,	FBgn0033482,	CG1371,	1	.
CG9252-RA	AGCATTTCAGCTCCCCTACTGGCACACGTCTATGAAGCTCTCAGTAAGTGCGGTATGCAGAAAGAGGCA	69	-	chr2L	21145781	21145850	21145781..21145850	CG9252-RA,	FBgn0086251,	del,	1	.
CG40116-RA	GCCAGCTTCATTTATATCTGGCAGAGCCATGCAGCAGCTAGCAGAAGACGAAAATAACGTCGTTTCCAA	69	-	chr2RHet	2270126	2270195	2270126..2270195				0	no match
CG4427-RA	TGCCTTCTCGCTCTCATGTAGCTGGTGTAGACTTAAGCTTAGTTAGGAGCTAGATCTTGTCACCGTTTT	69	-	chr2L	476802	476871	476802..476871	CG4427-RA,CG4427-RB,	FBgn0043364,	cbt,	1	.
CG7481-RA	AACTATGATCGCATCTTTCATCCGGACAATGAGCGTCTAGTTTGTTAGGATGCAGGCTACCCGCC	65	-	chrX	19037600	19037665	19037600..19037665	CG42274-RB,CG42274-RF,CG42274-RC,CG42274-RD,	FBgn0261461,	RhoGAP18B,	1	.
CG32593-RC	CAGAACACAAAAAACAACCAACGTTAATCTCAGCTAAAGTTATGCATTTCGAACGCAACATTTTGTGGC	69	+	chrX	14826690	14826759	14826690..14826759	CG32593-RD,CG32593-RA,CG32593-RB,CG32593-RE,CG32593-RF,CG32593-RC,CG32593-RG,CG32593-RH,	FBgn0024753,	Flo-2,	1	.
CG12617-RA	TCCCTGATCTTACGACACGCTTTCCTTTAAACGGTGACTTCTGAATAACACTTTCCTGGGGTTTCCATA	69	+	chr2L	20295177	20295246	20295177..20295246	CG12617-RA,	FBgn0040996,	CG12617,	1	.
CG4576-RA	ATTCCAGTGGGGATTCTATGGCTGTTTAGTGCTCATCCCATCTTCCAGCACTACTACGTGACGCCG	66	+	chr3R	11655447	11655513	11655447..11655513	CG4576-RA,	FBgn0038366,	CG4576,	1	.
CG1674-RB	CACCTTCACAGCAGTGCGAAATTCACTCGAAACATTTTGAAAGGCCATACGAAGACACTTTTCCGCGCA	69	+	chr4	265847	265916	265847..265916	CG1674-RB,CG1674-RE,CG1674-RF,CG1674-RH,CG1674-RI,CG1674-RJ,CG1674-RK,CG1674-RL,	FBgn0039897,	CG1674,	1	.
CG30325-RA	AGTCGAAATCAGAGGGCACCATCGAAGAGGAAGAGAAACCTGTGGACCCAAGACAGAGTTTCGCTTCCA	69	-	chr2R	13766038	13766107	13766038..13766107	CG30325-RA,	FBgn0050325,	CG30325,	1	.
CG5978-RA	GTGCCCGATGTGCAGAGTTTTCGAGCACTCAGTTGGAAGCTACTCCTTGGCTATTTGGGGCCTAG	65	-	chr3L	8616582	8616647	8616582..8616647	CG5978-RA,	FBgn0035916,	GAPsec,	1	.
CG1259-RB	TCCCATCGTCGCCTAAGTAGAAGGAGGAGAAGTAGGAGTCGTAAAGGAAGTATTGACCGCAATTCGACA	69	+	chr3L	4216252	4216321	4216252..4216321	CG1259-RB,	FBgn0035513,	Cpr64Ad,	1	.
CG1667-RA	CCGATATGGACCAAAGCACCCTGAGCTACTCGCACTGGATACGTGACTCCCATGGACTAGACTATGCGG	69	+	chr2R	5731749	5731818	5731749..5731818	CG1667-RA,	FBgn0033453,	CG1667,	1	.
CG18243-RA	GGCATCCCGAACCCGTTCAACGTCAGCGAAGGGATGGAGAGGTGACATCCGATGAGGAAATTGTTTTTA	69	-	chr2R	12060388	12060457	12060388..12060457	CG18243-RB,CG18243-RC,	FBgn0034085,	Ptp52F,	1	.
CG13804-RA	CTGGAGGGCCTGACTTCCAGCAATTCCCGTCTCCAATATCTGGTAGTGGACTATGCTCCGGATGG	65	+	chr3L	2277128	2277193	2277128..2277193	CG13804-RA,	FBgn0035328,	yellow-g2,	1	.
CG13331-RB	AACAGGTCACCAGCTCCTCCCTGACCGCCTCCAATGCCAAGCCCATAACGATTATCTTCAACAAG	65	+	chr2R	9410396	9410461	9410396..9410461	CG13331-RB,CG13331-RA,	FBgn0033850,	CG13331,	1	.
CR32807-RA	AGCCACGCCTCAACGCCTCGGAGTGTTTGCCCCCAGTCTCTGATAGATACACCATATTCTAATACACAC	69	-	chrX	1376524	1376593	1376524..1376593	CR32807-RA,	FBgn0044508,	snoRNA:M,	1	.
CG11279-RA	AGGCCAAGTTCAATGAGACGCAGAAGATCAAGTCCGTTATTTCGAAGTCGGTCAACAAGAGCGTGGAGA	69	+	chr3L	13040355	13040424	13040355..13040424	CG11279-RA,	FBgn0036342,	CG11279,	1	.
CG16711-RB	GTTTTACCGCCAGGAATTGGTAAAGGATAAACCATGATTTTCCTTTAGTTTAATACACAGGAACAGCAA	69	+	chr3L	9702563	9702632	9702563..9702632	CG16711-RB,CG16711-RA,	FBgn0036032,	CG16711,	1	.
CG8190-RA	CCTGGAGCCGTGGTAAAATCAACCCAAACGAAGGAGATCATAGCGGCTGACAATGCCAAGTTGTCCGAA	69	+	chr2R	11431488	11431557	11431488..11431557	CG8190-RA,	FBgn0034029,	eIF2B-gamma,	1	.
CG18769-RB	TGTGTTGAAAACTGTTTGCCTGTGCTATTAAACCCAATCCTAGAAACCAATCAGAGGACTCCACTCTCT	69	+	chr3L	6585932	6586001	6585932..6586001				0	no match
CG5532-RA	AACACCTCCACTTCTCACCAAAACAAAGGTTACCCCGAAATTTAATCAAAATAAATCGAAATGCCGGTG	69	+	chr2R	19640292	19640361	19640292..19640361	CG5532-RA,	FBgn0034902,	CG5532,	1	.
CG12077-RA	TGTCCTTCTGGGCAACCTGATATTTGGACACTATGGATTGGATGTAGCCATGGTCTCTAAGGTAGGCAA	69	-	chr3L	3318683	3318752	3318683..3318752				0	no match
CG12135-RA	TACCGATTGGTTTCGTACGTAGCAAACTGACCATTTTGTAAGGCATTTGCTTTTTAAGTTTTTCAGTTT	69	-	chrX	9212063	9212132	9212063..9212132	CG12135-RA,	FBgn0040235,	c12.1,	1	.
CR32657-RA	GGACGAGTAGCTTGCATCGATTCTAACATGTGATACACAAATCGGCTAAAAACTACATACTAATATCAT	69	+	chrX	11981598	11981667	11981598..11981667	CR32657-RA,	FBgn0052657,	CR32657,	1	.
CG9480-RB	TGCCCAGGATTTGATTCAGCTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCGA	69	+	chr2R	17092973	17093042	17092973..17093042	CG9480-RB,CG9480-RC,CG9-RD,	FBgn0034603,	Glycogenin,	1	.
CG3961-RA	CACTCTCCGTCCTGTGCAATAATAAGAATGTCAAGGAACTGATCATGAACGACATGCTCAACTGGGGCA	69	-	chr3L	18872415	18872484	18872415..18872484	CG3961-RA,CG3961-RC,CG3961-RD,	FBgn0036821,	CG3961,	1	.
CG13089-RA	TCTACTGCCTCGTGAAGGGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGC	65	+	chr2L	8515729	8515794	8515729..8515794	CG13089-RA,	FBgn0032052,	CG13089,	1	.
CG9374-RA	CCCCCCCTGAAGGGTGACAAATACCGCAACTCCACGGTGATACCTTACTTGGAAGCTTACCACTACGG	68	+	chr3R	9504302	9504370	9504302..9504370	CG9374-RE,CG9374-RF,CG9374-RH,CG9374-RI,CG9374-RA,CG9374-RB,CG9374-RC,CG9374-RD,CG9374-RJ,	FBgn0038167,	lkb1,	1	.
CG13789-RA	CTTCAACGGTAGACCACTCCTGTACGAGATAGACCACCTCTTGACCTACGCCAATGGGCTGGCAA	65	-	chr2L	7536018	7536083	7536018..7536083				0	no match
CG5317-RA	ACGCAGAAAAGAAATGACCGCATCAAAAAGAGAACCGCCACCAAGAATCACCACAAATTCCGCCG	65	+	chr2L	12056586	12056651	12056586..12056651	CG5317-RA,	FBgn0032404,	RpL7-like,	1	.
CG4935-RA	AGGACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGGGACATTCGAACG	65	+	chr2L	16262709	16262774	16262709..16262774	CG4935-RA,	FBgn0028897,	CG4935,	1	.
CG7281-RA	CCTGGAGTGCGAGTTTTACCTGCTGGAGAACCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGA	67	-	chr3R	10715308	10715375	10715308..10715375	CG7281-RA,	FBgn0004597,	CycC,	1	.
CG6525-RA	GCTACTTGCACGGCCTGACGACGAGTTCACTGTGGTCCGGTACTCTCAAGATGATCGATTTGGCC	65	+	chr3R	8245158	8245223	8245158..8245223	CG6525-RA,CG6525-RB,	FBgn0082831,	pps,	1	.
CG13751-RA	CCCAGCGGACTGTGTGTCATAGCAAAAGCTGAAATTTCTCGGGGGAAAAATGCCTGTTTTGGAGCACAT	69	+	chr2R	4787797	4787866	4787797..4787866	CG13751-RA,	FBgn0033340,	CG13751,	1	.
CG30203-RA	TCGGAGAGACGGATCACGGCGGTTACATGGGCAAAACCACTTCTTGGAACAGTAAACAGGAGCATTCCA	69	+	chr2R	8200176	8200245	8200176..8200245	CG30203-RB,	FBgn0050203,	CG30203,	1	.
CG5568-RA	TGCTGTCCAATTGCCCGGAATTCTATGCGGCGGACCTATCATCCGTGAAGTATTTCTTTTACGGCGGAT	69	+	chr3L	5865681	5865750	5865681..5865750	CG5568-RA,	FBgn0035641,	CG5568,	1	.
CG7081-RA	AATCCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCGTCGGCAAGCGGT	65	+	chr3L	8332506	8332571	8332506..8332571	CG7081-RA,	FBgn0035876,	pex2,	1	.
CG12820-RA	CTGGGCGGACATCTATCCCACGATCCTAGCAAGACCGGCAGTGTCCATCCGATGCTCACGGTGAC	65	.	.	.	.	.	CG34361-RE,CG34361-RH,	FBgn0085390,	Dgk,	1	.
CG32024-RA	TGTTCGACAGGAGAGGTGTGTCTATACCAAATTGGCAATCCTTGTGTGGCCTCACCAAACGGCACAAGT	69	+	chr3L	8801063	8801132	8801063..8801132	CG32024-RA,	FBgn0052024,	CG32024,	1	.
CG4012-RA	GGGATGGCATTCAAAATCAACGACTCCTAGACTTACCAACCACGCTCGAAACAGCCGATCAAGCCTGCA	69	-	chr2R	19979927	19979996	19979927..19979996	CG4012-RA,	FBgn0023081,	gek,	1	.
CG3270-RA	AGCAGTTCTCTTTGGCCGAGAACATAGAGATGTCGCTCTTCGGATACAACTTCGTGGTTAACGGCAGGG	69	+	chr2R	2581509	2581578	2581509..2581578	CG3270-RA,	FBgn0033093,	CG3270,	1	.
CG5433-RA	TACGAGGTAGCCGTTCCCCTCTGCAAGCAAGCATTGGAAGATCTCGAAAGGACAAGTGGTCACGA	65	-	chr3L	12740975	12741040	12740975..12741040	CG5433-RA,	FBgn0010235,	Klc,	1	.
CG11315-RA	GCGGCACCTGTTTATAATCTGTATACCCAGTAATTGGACTCATTTCACCTTGAATATGTCAGCAGAACA	69	-	chr3R	26571319	26571388	26571319..26571388	CG11315-RB,CG11315-RA,	FBgn0039801,	Npc2h,	1	.
CG8092-RA	CGCGATGGAGAAACCTCTGGTGAAGGTGCAGATATTAGCGAGACTGCTGATGATGTCGCGGATCAGAGC	69	-	chr2R	11094961	11095030	11094961..11095030	CG8092-RA,	FBgn0033998,	row,	1	.
CG7413-RA	CCTACAAAACGGAGCTCAAGTTCCCGTGGGTGCTCGACTGTTTCAGTATTAGCGCGTTCGAGTTC	65	-	chrX	692715	692780	692715..692780	CG7413-RA,	FBgn0015799,	Rbf,	1	.
CG13856-RA	ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCGAGTGCAACACCTCAAGGAT	69	+	chr3R	18230552	18230621	18230552..18230621	CG13856-RA,	FBgn0038959,	CG13856,	1	.
CG32813-RA	TCAAAAGTGAAGAACGAAAGAGCTACAGAAAAGAAATCGAAATTGTTACGCCTAGCCGAGAACTTGTGT	69	+	chrX	1286459	1286528	1286459..1286528	CG32813-RD,CG32813-RE,CG32813-RC,CG32813-RB,CG32813-RA,CG32813-RG,	FBgn0052813,	CG32813,	1	.
CG12667-RA	GAAATGCGGACGCACGAGAATGCCGAAGAAGATGGAGCGGATGGAGATTCCACGCCCTGGATACC	65	-	chrX	9206580	9206890	9206580..9206617,9206862..9206890				0	no match
CG1864-RB	GCCCCTAAGTTATGCCTCCTAGGATATACAGAGAAAGGACCCCATAGGACGGACGCAACTAGCTTTAGT	69	-	chr2L	20686696	20686765	20686696..20686765	CG1864-RB,CG1864-RC,CG1864-RD,	FBgn0014859,	Hr38,	1	.
CG12715-RA	TTCCCGACGTCGACATGACCGATAGATTTGTGGAATGGCTGGAACTGATGAGGCTACTGGGTGCC	65	-	chrX	12948134	12948199	12948134..12948199	CG12715-RA,	FBgn0030443,	CG12715,	1	.
CG14104-RA	GAAGCCTTGGCCAACCTAAAATGCGTACCCGTCGGATCGGTTTACGCTACATACAACCTGCCCCG	65	-	chr3L	19800049	19800114	19800049..19800114	CG14104-RB,	FBgn0040786,	CG14104,	1	.
CG13695-RB	TGATGAAGCTCAGCTACAAAGTGAGGGTCTAGCCACTGGATCCGAACCTTAAGTATTAGGATGTAGGCG	69	+	chr3L	18138176	18138245	18138176..18138245	CG13695-RB,	FBgn0020300,	gk,	1	.
CG8502-RC	CCGTTCCGGATAATAATGGCAAGTATACGGTTCCACAGCAATCCTCTAACGATGGCAAGTATCGCCCCA	69	+	chr2R	8274914	8274983	8274914..8274983	CG8502-RC,	FBgn0033725,	Cpr49Ac,	1	.
CG6839-RA	CTGGGTCTCCAAGAACAAGCTGAACGTGAACTGCTATACCGGTGTCTACGGCGTGACCACTCTGC	65	+	chr3L	18911927	18911992	18911927..18911992	CG6839-RA,	FBgn0036831,	CG6839,	1	.
CG10067-RA	TACGAATGAACCGACACCCTCATGTATTTTGTACAGAACCTAACAACTTCCCCGATAGAGCGGATGGGG	69	+	chr2R	16833773	16833842	16833773..16833842	CG10067-RA,CG10067-RC,	FBgn0000044,	Act57B,	1	.
CG10116-RA	AGGCATCTATTTCCTGGAGACCCGACAGTCCTCACCCTTCTCCCGTGGAGCATACTTCATAAGCTTCCT	69	-	chr3L	13449359	13449428	13449359..13449428	CG10116-RA,	FBgn0036367,	CG10116,	1	.
CG11152-RA	CGAGTTCCCAGTCTGCTCTGCAACTATCTGCCCTGGGTTATCCATACCACCAGCACTATATCGGCCAAT	69	-	chr4	858805	858874	858805..858874	CG11152-RA,	FBgn0039937,	fd102C,	1	.
CG31871-RA	CCTTCCGGCCAATATCGACTACATCCTGAGCAAGACGGGATACGAGCAGGTCCACTACATCGGTCACTC	69	+	chr2L	10668831	10668900	10668831..10668900	CG31871-RA,	FBgn0051871,	CG31871,	1	.
CG9356-RA	GCCACCGATGTAATCAGCCTAAGTGCCGAAAACCTTAACATTCTCCAACGCATGGTCCTGCACACTGGC	69	-	chr3R	5228645	5228714	5228645..5228714	CG9356-RA,CG9356-RB,	FBgn0037688,	CG9356,	1	.
CG12488-RA	TACACTATATAGAACAGAACGCATTATGATCGTGAGGAGGGAATCTAGACGTAAGCTCGTATGAACATT	69	+	chr2R	8638927	8638996	8638927..8638996	CG42663-RC,CG42663-RB,	FBgn0261545,	CG42663,	1	.
CG5386-RA	TCTCCAGCCAAAGCCAATTCAGACGGCACAACAATATGGAGGAGTCGGGCCAAAAGTCGTTAAGGC	66	-	chr3R	18167315	18167381	18167315..18167381	CG5386-RA,	FBgn0038945,	CG5386,	1	.
CG5970-RA	GGAGCGACTATACAACGAGCTGCTTCGAGATGTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAG	67	-	chr2R	9371803	9371870	9371803..9371870	CG5970-RA,	FBgn0033842,	cbc,	1	.
CG6675-RA	GCTGAGATGGGGGAGTTCATGAATGCTCTACCGAACCTCGATGATACCCCCTATGGCTTAGGACAGCGA	69	+	chr2L	22109260	22109329	22109260..22109329	CG6675-RB,	FBgn0032973,	CG6675,	1	.
CG6667-RA	TTGTTTAGTGCTGTAATAACTAGTCTTAAGGCGAAATGTAATGTGTTTTTGTAGGAAGTAAGGTTTTTT	69	-	chr2L	17436868	17436937	17436868..17436937	CG6667-RD,CG6667-RE,CG6667-RA,CG6667-RB,	FBgn0260632,	dl,	1	.
CG18223-RB	ACCGGAAGCCCACTGATTTTCAACGAAACAGTCTTTGGTGTGGTTAGCTACCGAGTAGGCTGTGGATCT	69	-	chr3L	18912503	18912572	18912503..18912572	CG18223-RA,	FBgn0036832,	CG18223,	1	.
CG16740-RA	GGACACCATACCTTGTCATTTGCTACTTCGGACTCTTCAAAATCGACGGATTGACCCCACTGACGACCA	69	+	chr3R	14726181	14726250	14726181..14726250	CG16740-RA,	FBgn0003248,	Rh2,	1	.
CG12744-RA	TGGCTAGGCGCTGACAACTGTTTTATGTAGAGGAACATAGAACCAGGATATGTCTTGCGAAGGGCTGAC	69	+	chr2R	5763527	5763596	5763527..5763596	CG12744-RA,CG12744-RB,	FBgn0033459,	CG12744,	1	.
CG32584-RB	TAACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAAAAGAATATCGCCGGCCT	69	.	.	.	.	.	CG42299-RA,	FBgn0259195,	CG42299,	1	.
CG5197-RA	GTGTCCATGCCACCTATTTGTCGCACAAAAACGGGGAGCTCAATCTCAACCTGGGACTTGTGCAC	65	+	chr2R	12558589	12558654	12558589..12558654	CG34457-RA,	FBgn0085486,	CG34457,	1	.
CG9990-RB	TCAGTAATCCGTTGCTCTAGATGTCCATTATTTGCAACCCTCTGTACTAGACCTTTTCTCGACGCCGAC	69	+	chr3R	24521165	24521234	24521165..24521234	CG9990-RA,CG9990-RB,CG9990-RD,CG9990-RE,CG9990-RF,	FBgn0039594,	CG9990,	1	.
CG12388-RA	TGGAACCGATGGATTTATTTACCCAGTAGCCAATTGGACCCATCATCCGAACTACGATCCCGTGACAGT	69	-	chr2R	7225842	7225911	7225842..7225911	CG12388-RB,	FBgn0043471,	kappaTry,	1	.
CG4471-RA	ACGGGCCTGCTCTCAAATCTGCTCTATATGCTACTCGGCATAGGAGTGATGTCTGGAGCAGGACTAGGA	69	-	chr2R	2944882	2945010	2944882..2944921,2944980..2945010	CG4471-RA,	FBgn0033137,	Tsp42Ep,	1	.
CG8156-RC	AGCCGGTAAATATCCGTAAAGTAAATTATGCGTGAAGCACAGAGACATAAAGCAAAACATCAACGGAGA	69	+	chr2R	11212132	11212201	11212132..11212201	CG8156-RD,CG8156-RB,CG8156-RC,CG8156-RA,CG8156-RE,	FBgn0013750,	Arf51F,	1	.
CR31339-RA	TGCCAACAAATCAGGGTTCTTGTGACTGGTTAGCTCAACACCCGGATTCTCACCAGATGGCACCATGAT	69	+	chr3R	16020651	16020720	16020651..16020720				0	no match
CG8862-RA	CGGCGGGATTGCTCTTCTTCGATCAAATCAATCGCAAGCAGCTAACCACCATCAATGGCAAGAAAGTCT	69	-	chr2R	8065047	8065116	8065047..8065116	CG8862-RA,	FBgn0033690,	EndoG,	1	.
CG5461-RA	AAATCGATAAAGTGTACTAGAGTGCCAGGGAAAACACACAGAAAATGAATAGGGACAGAAGGGAAAATA	69	-	chr2L	12456944	12457013	12456944..12457013	CG5461-RD,CG5461-RB,CG42281-RJ,CG42281-RK,CG42281-RL,CG42281-RM,CG42281-RN,	FBgn0259176,	bun,	1	.
CG12543-RA	TGGATCGTTTGTGGTCGATAACGGAGGACCTGAATATATTGTATAAGGAGAATTGGACGCGACTC	65	-	chrX	6378060	6378125	6378060..6378125	CG42340-RC,	FBgn0259242,	CG42340,	1	.
CG30495-RA	CGTGACGGTCAACGCCCTTAATCCTGGAATAGCAGACACGGAGATAGCCAGGAACATGATCTTCTTCCA	69	+	chr2R	3545571	3545640	3545571..3545640	CG30495-RA,	FBgn0050495,	CG30495,	1	.
CG5110-RA	ATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTACCAGGTGGTCCAGATGAACAAGCTGCC	69	+	chr2L	17481602	17481671	17481602..17481671	CG5110-RA,CG5110-RB,	FBgn0032642,	CG5110,	1	.
CG8439-RA	AAACTCGGGAATTAAATCTTGGAAAAACGTGCGAATCCGTCATCCTTTCATCTAAAAAACCATGAGCGC	69	+	chr2R	8062364	8062433	8062364..8062433	CG8439-RA,	FBgn0010621,	Cct5,	1	.
CG14471-RB	CCGCAACGCGTTGACCAAGTCTAGCTCACTAGACGCCATCTCACTTTCAGTAGCCATTTCGCCTG	65	+	chr2R	1888454	1888519	1888454..1888519	CG14471-RB,	FBgn0033049,	CG14471,	1	.
CG13796-RB	CCCGGTTGGGGCAGTATCATAACCTTGTCTAGCTACAACAACTTTCGCAGAGATGCCGAAAGACTGAGT	69	-	chr2L	7728585	7728654	7728585..7728654	CG13796-RB,CG13796-RA,CG13796-RC,CG13796-RD,	FBgn0031939,	CG13796,	1	.
CG5099-RA	GATCCTTCGACCTATTTCCCAATCACCAAGTCTTTCATTTGCATAACCATCCAAACAGCTCATGAACCA	69	+	chr3R	21427705	21427774	21427705..21427774	CG5099-RA,	FBgn0011666,	msi,	1	.
CG1827-RB	CCTACGCGCTTGGAAACGGTCAAATGCATAGGTGGTCAGGACAAAGTAAATATCGTGGCGTTGTGAGGT	69	+	chr2R	5477823	5477892	5477823..5477892	CG1827-RB,CG1827-RC,	FBgn0033431,	CG1827,	1	.
CG32758-RA	TCAAATGTTTTCGGCACTTAGCACATAGAGCAAACACAGGCACCAATTTAGATCAAGCAGAACCGACGA	69	-	chrX	5615037	5615106	5615037..5615106	CG32758-RA,	FBgn0052758,	CG32758,	1	.
CG7663-RA	CCATCGATTCTTTCACGCCGGAATTTATGGTCTTCGCGCCCATAAAGAGCAAACAATGGGGCTCGCC	67	+	chr3L	21289397	21289464	21289397..21289464	CG7663-RA,	FBgn0037068,	Cpr78Cb,	1	.
CG18853-RA	AGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCAACAATTCCCACCCCAAGGCCAAGGC	69	+	chr2R	3717287	3717356	3717287..3717356	CG18853-RA,	FBgn0042173,	CG18853,	1	.
CG18780-RA	TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTATTTCGCTCCACAGACAATAA	69	-	chr2L	8072208	8072277	8072208..8072277	CG18780-RA,	FBgn0013531,	MED20,	1	.
CG12038-RB	GGTGGGCATTTTCAGCTACGCCTTTCTCAACCTCAAGTTCTGCTTCAAGTTGATGTCCCATCGGAGCCT	69	+	chr3L	994131	994200	994131..994200	CG12038-RA,	FBgn0035179,	CG12038,	1	.
CG3271-RA	CGGGGTGTTATCACGTTGGCATTCCTCTCCTACTACATTAACTACTTTGCCTACCTGAGCGTGGGACGG	69	+	chr2R	2561918	2561987	2561918..2561987	CG3271-RA,CG3271-RB,	FBgn0033088,	CG3271,	1	.
CG8146-RA	ACCTTTTCCTTTGGCTCGTATGCCAAGTTCAAGTCGCAGACCATCACCGAGTTCATTGAGAAGGCCGT	68	-	chrX	17716851	17716919	17716851..17716919	CG8146-RA,	FBgn0030869,	Socs16D,	1	.
CG3934-RA	AGCTTCAAGAAGTTATCCCTGTGCCTAGTGCTTTCTATCATGTGGACCTCGGTTGCAGACAGCACGCCA	69	+	chr3R	5886024	5886093	5886024..5886093	CG3934-RA,	FBgn0037783,	Npc2c,	1	.
CG12729-RA	AGTGGCCTTCAACATCGTCGAAAGCACCCATTCGCTGGAGTCTTAAAAGATGCAGAGCACACCATGCAA	69	+	chrX	5740041	5740110	5740041..5740110	CG12729-RA,	FBgn0029816,	CG12729,	1	.
CG16884-RA	CATCCAGTCAAAGGTTTGGAATCGCTAGTGATTCTACAATCCTTCCACAGTCTATTTCGCTGTTACTGA	69	-	chr2L	13947404	13947473	13947404..13947473				0	no match
CG16807-RA	GTTGAGCCTGCGTTTTGCTTTCAAGACTTTGTACATCAGTTTGATTCGAAGCAAAAGTGAGAAAGATTT	69	-	chr3L	16366346	16366415	16366346..16366415	CG16807-RA,	FBgn0036621,	roq,	1	.
CG32806-RA	CGGGCACAGATAGCGTCTATCTCGCCAACCCTTCGATGAACGAGCTAATGCGAGCTATTCAAAGTGGCT	69	+	chrX	1683896	1683965	1683896..1683965	CG32806-RA,	FBgn0052806,	CG32806,	1	.
CG10588-RA	TCGAGCAGATTATGTGGAGCAACGTATTGAAGCCTTTAGGTCTCGAATGGCTGAACTTGTCTCCCAGAT	69	+	chr3L	20952695	20952764	20952695..20952764	CG10588-RA,	FBgn0037037,	CG10588,	1	.
CG9481-RA	GTGACCAGCCCTCCAATGCCGATGTCATGGTGATGCATGGCTTTGGAATCAAGCAAAGCATCCTTACC	68	+	chr2L	6226316	6226384	6226316..6226384	CG9481-RA,	FBgn0026755,	Ugt37b1,	1	.
CG14398-RA	GAGAAGCCCCACGAAGAGAGATCCATCCTGGTGGACTTCCAACTGTGTCGATATAGCCCACCTGC	65	-	chr2L	21083294	21083359	21083294..21083359	CG33510-RB,	FBgn0053510,	CG33510,	1	.
CG9495-RA	AGGTGATCCAGTACATCGAGAGCAACGACAACTCCCTTGCAGTTCATGGTGATCTCTTCCGAAAGCACG	69	-	chr3R	5460257	5460326	5460257..5460326	CG9495-RA,CG9495-RB,	FBgn0003334,	Scm,	1	.
CG1685-RA	GCGATCTGTACCGGAAGGCCAAGGATTCGAATGTGAAGACTCTGAGCGACACCTATAAGGAGGCCACGA	69	-	chrX	21219276	21219345	21219276..21219345	CG1685-RA,	FBgn0015527,	pen,	1	.
CG6578-RA	CTATCGAATGTGTCCCGGCGAAGAGATGGCTCGCATGATACTCACGCTCTTTACGGGTCGCATCC	65	+	chrX	18581961	18582026	18581961..18582026	CG6578-RA,	FBgn0004959,	phm,	1	.
CG4362-RA	CCGCCTGCGATTCATCGATGGAAGCGATAGAAAGGATATCGGCGATCAGATGGGCGAATTCGATGTGAC	69	-	chr3R	16132327	16132396	16132327..16132396	CG4362-RA,	FBgn0038784,	CG4362,	1	.
CG3198-RA	ACCAAGAACACAAGTAAATAATCCGAAAGTCCGGAGCACTTCCAGTTTCCAAAGCCCCATACCGCAAGT	69	-	chrX	6565880	6565949	6565880..6565949	CG3198-RA,	FBgn0029887,	CG3198,	1	.
CG32849-RA	TGGGTGGCTCTAATTTCAGGGTGCTTCTGGTGAACCTGATTAGCAACTCGGACGTGGAAACCATGTCGA	69	+	chr3R	22276717	22276786	22276717..22276786	CG32849-RA,	FBgn0042710,	Hex-t2,	1	.
CG6584-RB	TGGCCAATTTTAGCTCGTAGTCAAGTCAATCGCCCCTCTGTTTGTGTAAATAGCTAATGTTTTGGTTCG	69	-	chr3R	6689191	6689260	6689191..6689260	CG6584-RB,CG6584-RA,CG6584-RC,CG6584-RE,CG6584-RI,	FBgn0037847,	SelR,	1	.
CG12000-RB	AGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCGCCGAAACCATAAAGGGATACTAGAGCCTCCGAT	69	-	chr3R	1182842	1182911	1182842..1182911	CG12000-RA,CG12000-RB,	FBgn0250746,	Prosbeta7,	1	.
CG13680-RA	TGGACACCACAGCATCGAGAATGGCAGGCAAATCAATACCAGCTCTAGTTCATGCAGTAGTCTTAAGGA	69	+	chr3L	8086334	8086403	8086334..8086403	CG43119-RD,CG43119-RG,CG43119-RI,	FBgn0262579,	Ect4,	1	.
CG6873-RA	TGGCATCTGGAATTAATTTGAGCCGCGAGTGTCAGCACGTGTTCGAGCAGATCCGGAAGCTGAAG	65	-	chrX	18633691	18633756	18633691..18633756	CG6873-RA,	FBgn0030951,	CG6873,	1	.
CG32643-RA	ACTGGCGCAGATCTCCCATTGAATCGGGAATAGCGAAGGAACGAGGAACCATGCCAGTGTACACAACAA	69	+	chrX	12878916	12878985	12878916..12878985	CG32643-RA,	FBgn0052643,	CG32643,	1	.
CG5588-RA	GGCTGTTTTTTTCTGCGGATCGTTGCTGTCACACATTTGGCAAACCACGATTCCCTCCCGCAACAACTA	69	+	chr3R	23464688	23464757	23464688..23464757	CG5588-RB,CG5588-RA,CG5588-RC,CG5588-RD,	FBgn0039532,	Mtl,	1	.
CG14182-RA	ACTGATGTGGACCTGCATGACGCTATATAACCGACCGCAAGTGTGCTATACACCCGAACTGCAGC	65	-	chr3L	19972607	19972672	19972607..19972672	CG14182-RA,	FBgn0036922,	CG14182,	1	.
CG9445-RA	ATAGCACCCATGTATGAGCCATCATAAGAGGAATATATGTATCTAATGTTGCACCAACCTTGGGCTACA	69	-	chr2R	2725992	2726061	2725992..2726061	CG9445-RA,	FBgn0040674,	CG9445,	1	.
CG8795-RA	GCGAAAGTGAAAGTGCTCAAGAGCTCAAGCCCGTTCAAGGGTCTCAGGACCAAATTCAATTGGCGTGC	68	-	chr3R	9155141	9155209	9155141..9155209	CG8795-RA,CG8795-RB,CG8795-RC,	FBgn0038139,	CG8795,	1	.
CG13207-RB	TTCCTCCATACGCACCCATGAGCGCTTCACAGAGATCGGACATATGCCCAACCTGAATGGAGGAG	65	-	chr2R	7199044	7199109	7199044..7199109	CG13207-RA,CG13207-RC,CG13207-RB,CG13207-RD,	FBgn0016047,	nompA,	1	.
CG8105-RA	GGCCATTGAAAAACTGGAGAGAAAGTCTCAGGAGGATGGGAATGGTTACTTCGTGTTCATTGAGGGCGG	69	+	chrX	15482684	15482753	15482684..15482753	CG8105-RA,	FBgn0030661,	CG8105,	1	.
CG3011-RA	GCCTGCTTTGTTTGTCCCTTTTTCTTTTGTTCGCCTTACGATTTACATCCTCGAAAAGTCCGCTTGTTA	69	-	chrX	5807155	5807224	5807155..5807224	CG3011-RA,CG3011-RB,	FBgn0029823,	CG3011,	1	.
CG10143-RA	GCGGGAAACTGTGCAAATCTACAAGGACACACTGGAGCGATTTAAGAAGGAGCATCCAGGATTCATCGA	69	-	chr2R	10545253	10545322	10545253..10545322	CG10143-RA,	FBgn0033952,	Adgf-E,	1	.
CG3885-RA	CGGCGCCATGATCAACCTGGAGTTCAACATTCAGGACATACTCGCCTTCTTCTCGGACATAGCGCG	66	-	chr3L	17415217	17415283	17415217..17415283	CG3885-RA,	FBgn0086475,	sec3,	1	.
CG32033-RA	TGCCAACGGCTCTAGATTAGACAATTTCCTATCCATTCCAGTTGGATTTTATACAGCGACATAAATGGG	69	+	chr3L	8941568	8941637	8941568..8941637				0	no match
CG6819-RA	GCTTCGCTACTTTGCCTACCACAACGCAGGACTTCATGCCGTTACGGTCAGCTTTATCGCAGAGCTG	67	-	chr3R	8503526	8503593	8503526..8503593	CG6819-RA,	FBgn0026207,	mbo,	1	.
CG11323-RA	CGGCGCCGACTTCATGATCTGTGAGAATTTCTATCCCTGGCTCATCGAGATCAACTCCAGTCCGGATCT	69	-	chr2L	6737646	6737715	6737646..6737715	CG11323-RA,	FBgn0031854,	TTLL3A,	1	.
CG10672-RA	TCGAGTGCGATGAGAAGGTGTGGGACAAGATCTTCGATGTGAACGTGAAGAGTTCCTATCTGCTGGCCA	69	-	chr3L	5134022	5134091	5134022..5134091	CG10672-RA,	FBgn0035588,	CG10672,	1	.
CG5149-RA	CGAAAATCAACGGGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAAGGACCAACGCTGTTCT	69	-	chr2L	7385624	7385693	7385624..7385693	CG5149-RA,CG5149-RB,	FBgn0031904,	CG5149,	1	.
CG10103-RA	CCCGCCTACAGAGCGATATAGCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATACGGTCCAC	69	-	chr3L	6749049	6749118	6749049..6749118	CG10103-RA,	FBgn0035715,	CG10103,	1	.
CG30158-RA	TCGAGGCAGGACTAGGTTAAGCGCGTTTTCGACTGGCGGATTGTCATAATATTGTGACAGGTGGCATAG	69	+	chr2R	2808630	2808699	2808630..2808699	CG30158-RA,	FBgn0050158,	CG30158,	1	.
CG9305-RA	AGCACTCCTCTATCCTAAGGCCTTCAACATTCAGGAGCTCAAGGATCAACTGGAAGAGGAGGACCGCGA	69	-	chr2L	13372371	13372440	13372371..13372440	CG9305-RA,	FBgn0032512,	CG9305,	1	.
CG8874-RA	TGTCTACAAGGCCAAACTGAAGTCCACCAAACTGGATGTGGCTGTCAAAACCTGTCGAATGACCCTGCC	69	-	chr3R	5194907	5194976	5194907..5194976	CG8874-RA,CG8874-RC,CG8874-RD,CG8874-RB,	FBgn0000723,	Fps85D,	1	.
CG10076-RA	CAGAGGAGAATACCGAGAATTCCTGGCTGAAGCTTTGTACATTTTCTGCCGGCTACAGAGAGATCCGCT	69	+	chr2L	20347523	20347592	20347523..20347592	CG10076-RA,CG10076-RB,CG10076-RC,CG10076-RE,CG10076-RF,	FBgn0003475,	spir,	1	.
CG12663-RA	TGGGTGCTTCGACCAGGTGATCATTAGCAACTCATCCATACTGATCGGTGCCATGAGTGGTTCGCATCA	69	+	chrX	7659868	7659937	7659868..7659937	CG12663-RA,	FBgn0029961,	Ir7a,	1	.
CG30106-RA	TGGTCCTGTTGCACTTCCTGGTCTACTACGCCATTCCTTTGGTCGTCATAGCAGTTTTCTACGTGCTCA	69	-	chr2R	13538457	13538526	13538457..13538526	CG30106-RA,	FBgn0050106,	CCHa1r,	1	.
CG7246-RA	CCATGCTGGCACTCAATAGCGATGGAAAGACGGAGCGTATACTAAAGCAACAGTGCCTAGCGGAT	65	-	chrX	8973788	8973853	8973788..8973853	CG7246-RA,	FBgn0030081,	CG7246,	1	.
CG5478-RA	ACATTTTCGACGCTCTGGGGAGAAAGGCGAAAAAATCAAAATCCAAGCACTGAACCGTTTCTGGTGGGG	69	-	chr3R	11758600	11758669	11758600..11758669	CG5478-RA,	FBgn0038386,	CG5478,	1	.
CG11212-RA	GCCCGCAATTTAATGACACAACACAAGCATTTCATCGATAAGAGCTCAGAGAACTTAAAATACCAACAA	69	-	chr2R	2069517	2069586	2069517..2069586	CG11212-RA,CG11212-RB,CG11212-RC,	FBgn0262867,	Ptr,	1	.
CG8544-RB	ACACGGGCTATGAGCAGTTCCTGAAGTTGTCCGCTCATGAATATTCAGAAACTGACAGACGCTCCGCGG	69	+	chrX	15719169	15719238	15719169..15719238	CG8544-RB,CG8544-RA,CG8544-RC,CG8544-RD,CG8544-RE,CG8544-RF,CG8544-RG,CG8544-RH,CG8544-RI,CG8544-RJ,CG8544-RK,CG8544-RL,CG8544-RM,CG8544-RN,CG8544-RO,CG8544-RP,	FBgn0003345,	sd,	1	.
CG8490-RA	AGCAGCTTTAAGGCCATCAGAATGGAATCCGATTCGAGCGAAAGAGGAGAGACAAAAGCGAAGGGAAGT	69	+	chr2R	8222969	8223038	8222969..8223038	CG8490-RA,CG8490-RB,	FBgn0033715,	CG8490,	1	.
CG9997-RA	GGCGAACGAGTCGGAATCCTCGAACACTCATCTCCATCGCTATATGCTGGACACCTATAAGCCGCAGCA	69	-	chr3R	24582585	24582654	24582585..24582654	CG9997-RA,	FBgn0039597,	CG9997,	1	.
CG13993-RA	GCGCGAGGACCTGAAGGCTAGGCAGGAGAAATGCGACAAAGCGATAGAACTGCTGGAGAAGAAGA	65	+	chr2L	6069609	6069674	6069609..6069674	CG13993-RA,	FBgn0031776,	CG13993,	1	.
CG3977-RA	AAAACAGTCGTACGATTTTTGCTCAATCCGAAAATGGCTGTTGTGAAATTGCTTTCCTAAACGAATGGC	69	+	chrX	6561977	6562046	6561977..6562046	CG3977-RA,	FBgn0062413,	Ctr1A,	1	.
CG16792-RA	CGAAATGCGCGACTAGCCAATGGATTCACCTACATACACCCACACCTTACTTCTAAGTCTACAAACGTA	69	-	chr2R	8071374	8071443	8071374..8071443	CG16792-RA,	FBgn0000426,	SmF,	1	.
CG7137-RA	TCGTAGCGACATCATTGCCTGCAACATCACGGATACTCCACTCCAAGCTCGAACTCTGGACGTGG	65	+	chr2R	15115635	15115700	15115635..15115700	CG7137-RA,	FBgn0034422,	CG7137,	1	.
CG3050-RA	GCCCGATAGCAAACTTGTGATCCAAAAGGGTACTCCCATCATAATCTCCCTCATCGGAATGCACCGCGA	69	+	chr3R	9856661	9856730	9856661..9856730	CG3050-RA,	FBgn0038194,	Cyp6d5,	1	.
CG12052-RG	TGCCCAGAAACCCTCTGCCATCCAACGATCTCTTGACTTGGCTTGATTAAGCTACTAAGACCAAAACTT	69	-	chr2R	6369925	6369994	6369925..6369994	CG12052-RG,CG12052-RR,	FBgn0005630,	lola,	1	.
CG13691-RA	TACTACCACGAAGCGGATGTGCAAAAAGCCCACTCCCTTTGTCAAGCGGTTCTGGAAGTTGAGCG	65	+	chr2L	424298	424363	424298..424363	CG13691-RA,	FBgn0031255,	BBS8,	1	.
CG18166-RB	CCTGCGCCGTCTCTCCTCACAAGTGGACTATCGCGCGGAAAGAAAGCTGACACAGGACATAAGTGAAAC	69	-	chrX	374453	374972	374453..374495,374945..374972				0	no match
CG1294-RA	ATGCTTCTGGTCACTCAATTTATCACTTCCAAAGTTTTAAAAGCCTTAACCAGCAAGTCGATTGC	65	+	chr2R	1553214	1553279	1553214..1553279				0	no match
CG14250-RA	CACGCAACAACAGATTCCAGCTGCTGCGGATGAGTTCAGCAAGGAGTTCTACACCTACGCTGCAC	65	-	chr3R	22518840	22518905	22518840..22518905	CG14250-RA,	FBgn0039448,	TwdlQ,	1	.
CG12128-RB	GGCGGACAATTGGTTACTAAGCTTGTTTTGGTTAGATCTAAGTGTCTATTTCTAAAAATCGCTGGCAAA	69	+	chr2R	5918060	5918129	5918060..5918129	CG12128-RB,	FBgn0033473,	CG12128,	1	.
CG13123-RA	AACCAGGCTAGTGATGAATTCGAGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGT	65	-	chr2L	9792576	9792641	9792576..9792641	CG13123-RA,	FBgn0032150,	CG13123,	1	.
CG12558-RA	AGCGGAGGCAACAAAGAACCCAACAGCCTAGAGATAATTCCCGCTGAAATCGAGACTCTCCTTACCGAT	69	+	chr3R	24616435	24616504	24616435..24616504	CG12558-RA,	FBgn0039599,	CG12558,	1	.
CG9933-RA	TCTCCATGCACTGCCTTCGAGACGAAAGTCAAGCTTATATCACAGAACCTCAAGGAAACCACGCTGGC	68	-	chr2L	13020810	13020878	13020810..13020878	CG9933-RA,	FBgn0028965,	A16,	1	.
CG14274-RA	GTCCGCTCATGAATTGCCAAAAAGTTGTGGCCAAAGACCCTGATACAAGGAAAGTGGTGACGGCG	65	.	.	.	.	.	CG14274-RA,	FBgn0032023,	CG14274,	1	.
CG8550-RA	CGAATACCGTCCATATGCCTTTGAGCAGGAGTTCACGGCTCCCCAACTGTTTCACCTTAGCTACGCACA	69	+	chr2R	8361068	8361137	8361068..8361137	CG8550-RA,	FBgn0033742,	CG8550,	1	.
CG4533-RA	TTTGTACCGCCTTCAGTGTTAGTTAGTTTATGTCTACGTGTGCCTTATATATTGGACTCTACATATTTT	69	-	chr2R	19572199	19572268	19572199..19572268	CG4533-RA,CG4533-RB,	FBgn0011296,	l(2)efl,l(2)efl,	1	.
CG5828-RA	AACTACTGGTCTATGCAAATGGACAGACTGGTCCCTGCCTGGATATGCGCACTCTCCCCAAGGAG	65	+	chr2L	5094922	5094987	5094922..5094987	CG5828-RA,	FBgn0031682,	CG5828,	1	.
CG6633-RA	GGAGCGCTTGGAAAATCACTACGAAGTCATTGTGGAGGACATTCATCGCCATTTCGTTCACCTGCCACA	69	-	chr3R	6953337	6953406	6953337..6953406	CG6633-RB,	FBgn0040256,	Ugt86Dd,	1	.
CG40049-RB	CCGCTAAAGCGCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCAGGACAAAAACTAATCA	69	.	.	.	.	.	CR42722-RA,CR42723-RA,CR41597-RA,CG40049-RC,CG40049-RA,	FBgn0261639,FBgn0261640,FBgn0085810,FBgn0044510,	CR42722,CR42723,CR41597,mRpS5,	4	.
CG30357-RA	GCAATGCCCCACACAGACGACACATTTCCGGAAGGCAGTTCTTGTTGTCCTATTGACATTGTTTCCTCA	69	-	chr2R	4608947	4609016	4608947..4609016	CG30357-RA,	FBgn0050357,	CG30357,	1	.
CG7277-RA	ATCAATCACAACTCCATCGAGCTGTTCAAGTCCATTGATGCGTGGAAGCACATCGAGTCGGCGCG	65	-	chr2L	5531776	5531841	5531776..5531841	CG7277-RA,	FBgn0031713,	CG7277,	1	.
CG9434-RA	AAGAATCCACTATCGATTCTTCAGCGGTCTAGGAAGTTAGTTTCATTGTTACCAAGGTTTCTGGTTCAT	69	-	chr3R	5470951	5471020	5470951..5471020	CG9434-RA,	FBgn0037724,	Fst,	1	.
CG8982-RA	GGGCAACTGCAAAACACTCGAAAGTCCACAAAGCCGTGTAAGAAACGTTCTAGTAAGGATAGCGCCCCA	69	-	chr2L	5893188	5893257	5893188..5893257	CG8982-RA,	FBgn0002855,	Acp26Aa,	1	.
CG3921-RA	CCGGGATAACTCCACCTACGGTGATAACACCCGAGCCAATTCCATTAGTACCAGTGTGGCAGAGGACAC	69	+	chr2L	3801521	3801590	3801521..3801590	CG3921-RA,CG3921-RB,CG3921-RC,	FBgn0031571,	CG3921,	1	.
CG5008-RA	GGTCGGGACAGCTGAGAATCGCTTATACCCGTCCGAATGGAGGTAATCTGGATTTGTATGGCGCCG	66	+	chr3L	8949080	8949146	8949080..8949146	CG5008-RA,	FBgn0040321,	GNBP3,	1	.
CG6712-RA	GCCCACTTCAAGCTGTCCAACGTGAAGCTCACCTCGGACATAAAGCGCGATCACAAGGAGATAACCA	67	-	chr2L	12095570	12095637	12095570..12095637	CG6712-RA,	FBgn0032408,	CG6712,	1	.
CG5767-RA	ATGCCCGCAATTTGGATACCACCGTTTCCGCTGATGTGACCACCCAGTGCTTCAACCTCTATCTG	65	-	chr2R	13934712	13934777	13934712..13934777	CG5767-RA,	FBgn0034292,	CG5767,	1	.
CG8201-RF	TAACACTTGCATTTGCTGTCCACAAGACTCTGGGTGTGGTTAAAAAAAAGCTGGGAGTTTGTTAACAAA	69	+	chr2R	15370105	15370174	15370105..15370174				0	no match
CG4716-RA	TCTGCATATGACCGGGCCGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGC	65	+	chr2R	9144604	9144669	9144604..9144669	CG4716-RA,	FBgn0033820,	CG4716,	1	.
CG13038-RA	CTCGTCTGCTCATCGATTCAGCGCCCTCAGTGGTCTCCTACCAGGGTTCCTCACAGGCCCAAACC	65	-	chr3L	16320566	16320631	16320566..16320631	CG13038-RA,	FBgn0040795,	CG13038,	1	.
CG14163-RA	AGCGACATGTTCTCGCTGGGAATGGTGATCTGTGCGGTCTTCAATAACGGAAGGCCACTGATTCA	65	+	chr3L	9942126	9942191	9942126..9942191	CG34356-RC,	FBgn0085385,	CG34356,	1	.
CG13788-RD	CCAACTGGATGTTGTTGGGTAATGATGTGCGACCCATTTACACAGCAATTGTGGCGTTCTACGTGCCCC	69	-	chr2L	7456818	7456887	7456818..7456887	CG13788-RD,	FBgn0045495,	Gr28b,	1	.
CR33460-RA	TGCGGTCTTATGCGAGAAGAGTTTTCAACATCTTTGGGTCCCTGGACAGCTCTACTGCACACGGATGGT	69	+	chr2R	11581712	11581781	11581712..11581781	CG33460-RA,	FBgn0053460,	CG33460,	1	.
CG4332-RA	GCACGCTCATTGAGCTGTGGAAGTGCAAGAAAATCTTCCGTCTGGAGCTTAGCTTCAGTGGCCTGG	66	+	chrX	13050276	13050342	13050276..13050342	CG4332-RA,	FBgn0030456,	CG4332,	1	.
CG10033-RA	CGCCAGATGATGTCACTGGATGGGACAAGGACTTCTGAGGAGAATCAGAACCCGTTTCCTAGACGATGC	69	-	chr2L	3622746	3622815	3622746..3622815	CG10033-RE,CG10033-RC,CG10033-RJ,CG10033-RH,CG10033-RD,CG10033-RG,CG10033-RF,CG10033-RI,CG10033-RA,CG10033-RB,CG10033-RK,	FBgn0000721,	for,	1	.
CG9339-RC	ATACTCTGTGAGTTCATGTTTCAAAACGCAAAGCTTTGAAATTACAATACCCTAGTTGTTATAACCCCT	69	-	chr2L	20873376	20873445	20873376..20873445	CG9339-RB,CG9339-RE,CG9339-RC,CG9339-RF,CG9339-RD,CG9339-RH,CG9339-RG,CG9339-RA,CG9339-RI,	FBgn0032901,	sky,	1	.
CG8197-RA	GCTTGCTGGATGCCGAGGTAGTACTCCACTCCGAGCTGGACATCAGTTACACATACGACGAGGCACTG	68	-	chr2R	4948157	4948225	4948157..4948225	CG8197-RA,	FBgn0033369,	CG8197,	1	.
CG5193-RA	CCGCAGCCGCAATCTATATGGCCTCACAAGCATCCGAGCATAAGAGAAGCCAGAAGGAAATCGGTGATA	69	+	chr2L	10432334	10432403	10432334..10432403	CG5193-RA,	FBgn0004915,	TfIIB,	1	.
CG5065-RA	CCGAGGTTATCTACGCACCGCCCTACAATCCCGATGATATCATTTCACTAATCAACTGGCTTCCGGAGG	69	+	chr2R	12509441	12509510	12509441..12509510	CG5065-RA,CG5065-RB,CG5065-RC,CG5065-RD,CG5065-RE,	FBgn0034145,	CG5065,	1	.
CG1806-RA	GGCACAGCCGCATGATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCTGAATA	69	+	chrX	11902887	11903082	11902887..11902929,11903055..11903082	CG1806-RA,	FBgn0030360,	CG1806,	1	.
CG30422-RA	TGGTAGCTGTGGATTCGGACAGCAGTGTTGAGCTAATAGAGAGTCCTGTCAAATTCTCCTCCGCCAACG	69	-	chr2R	20666942	20667011	20666942..20667011	CG12196-RA,	FBgn0086908,	egg,	1	.
CG1324-RA	TAGCTGTTCCAGGACACTGATCCTGCTTAACTCCCTGAAATCCATGCACCACAAGAGCCTGCACG	65	-	chrX	20606638	20606703	20606638..20606703	CG1324-RA,	FBgn0031129,	CG1324,	1	.
CG31910-RA	GCCGCATCTAACCAAGCAGCTCAAGAAGCACTACGGGATTGAGGCAGAAGTTCTGGGTCTCCTTGTCAA	69	-	chr2L	6745378	6745447	6745378..6745447	CG31910-RA,	FBgn0051910,	CG31910,	1	.
CG5203-RA	CGAGTGCTTCGGTGTTGTTGGACACACACTCACTTTTCATCGGTGGAAAATCAAATTTGGGACCAGGCG	69	+	chr2L	10437753	10437822	10437753..10437822	CG5203-RA,	FBgn0027052,	CHIP,	1	.
CG12852-RA	AGCAGCCGCAGCAACAGCAGCAACAACCACCAGTGGCTCAGGTTTATGGCATGTCCGAAGTGTAG	65	+	chr3R	24063788	24063853	24063788..24063853	CG34354-RA,CG34354-RE,CG34354-RD,	FBgn0085383,	CG34354,	1	.
CG6253-RA	TCCTTCTCTTTCTTTCCGGTTAGCGTCATGCCTTTCGAGAGATTCGTACAAACTGGTCGCATTGCCA	67	+	chr3L	8594107	8594450	8594107..8594137,8594413..8594450	CG6253-RA,	FBgn0017579,	RpL14,	1	.
CG13880-RA	CGTCACTGCGTTGGTGAAGCACGAGCGTATTGAACTGTTCTACAACCGTGCCGATGAAGCTCGTG	65	+	chr3L	264970	265035	264970..265035	CG13880-RA,	FBgn0035122,	mRpL17,	1	.
CG1921-RC	TTACTTTACCAACTACGAAGCCGGAACAAATCTGAGGAGCGAAAATATGGGATAACGAAATCGATTGCT	69	-	chr3L	3402027	3402096	3402027..3402096	CG1921-RC,	FBgn0014388,	sty,	1	.
CG5649-RA	TCATTTGGAGACGGTAATCCCCGCTTTGGACAAGCCTGTCATGGTGGTTAATGGCGCTTATCGGG	65	+	chr3L	20351042	20351107	20351042..20351107	CG5649-RA,	FBgn0024887,	kin17,	1	.
CG5604-RA	CCTGGCCCTTACGTTCACGTATCTGCCGAGTTCCTCGATCTATGGTTACACCCAGGCCGAATTGC	65	-	chr2L	10282609	10282674	10282609..10282674	CG5604-RA,	FBgn0032208,	CG5604,	1	.
CG9312-RA	GCGAGGTTCAAGCGAAACGTTCCACGAAAGATATATACGGCTAAAGTGGTGCAGTTGTCCAAGGAATCC	69	+	chr3R	9591501	9591570	9591501..9591570	CG9312-RA,	FBgn0038179,	CG9312,	1	.
CG31921-RA	GCACGACTATGATGAGCTGTATAAGCGGTTCCAAGCCTGCTTCGAGGAAAAGGGTCAACCAGATCCCGA	69	-	chr2L	331206	331275	331206..331275	CG31921-RA,	FBgn0051921,	CG31921,	1	.
CR31621-RA	CGCATTTTGGTCGAAGACTTCCCCGAATTCTCGAGCAGCTTTAAGAGCACAGATGCGATACGAGATACA	69	-	chr2L	21283898	21283967	21283898..21283967	CR31621-RA,	FBgn0041336,	Cyp6t2Psi,	1	.
CG32954-RG	GCCGACACGAACTGGAAACCAACAACTAACGGAGCCCTCTTCCAATTGAAACAGATCGAAAGAGCCTGC	69	+	chr2L	14616248	14616317	14616248..14616317	CG3481-RI,	FBgn0000055,	Adh,	1	.
CG10625-RC	ACCCGAAACCAAGGTGACTAGTGAGACGAACTGAGACAAGGACGAGAGGACAATCAAATTCCCCTCCCA	69	-	chr3L	5532035	5532104	5532035..5532104	CG10625-RA,CG10625-RD,CG10625-RC,CG10625-RB,CG10625-RE,CG10625-RH,CG10625-RI,CG10625-RJ,	FBgn0035612,	CG10625,	1	.
CG6625-RA	AATCAATTATTGAATTTATTGAATGAAGATCTCCAGGAAACACACAACACCACTGAAACCTGACCCAAC	69	+	chr3L	20309496	20309565	20309496..20309565	CG6625-RA,	FBgn0250791,	Snap,	1	.
CG6593-RA	ACACACACAAAACACAAATAGGGAAAACAGAAAGGAGAATCCGTGTGTCCACATTCAACGGAAAGCGCA	69	+	chr3R	20346267	20346336	20346267..20346336	CG6593-RA,	FBgn0003134,	Pp1alpha-96A,	1	.
CG12093-RA	TCACAGCTTGTACCAACCGGATTTGTCCAGAGAAGCCATTCTTACGGAGCACTTTCTACCTAGCGCCTA	69	-	chr3L	2773164	2773233	2773164..2773233	CG12093-RA,	FBgn0035372,	CG12093,	1	.
CG13955-RA	AGGAGATCCTGCTGGAGTCCAAGCAAGCCCAACTCCATCAAATCGAGGAGAAAAAGGCGCTCAAA	65	-	chr2R	5310673	5310738	5310673..5310738	CG13955-RA,	FBgn0033412,	CG13955,	1	.
CG8138-RA	AAGGGAGATCACAAGAACATACCCGTTACCACCAAGAAGAACCCCTTTTCCAGCAACGTTAGACGCTCT	69	+	chr3R	9007690	9007759	9007690..9007759	CG8138-RA,	FBgn0038122,	CG8138,	1	.
CG6746-RA	CCGTGAGAACAGCGTGTGGAGTGTGGTGATGCCCAACAAGTGGAACGCCACCTTCTCGTATTTTG	65	-	chr2L	12001541	12001606	12001541..12001606	CG6746-RA,	FBgn0032394,	CG6746,	1	.
CG3016-RA	CCGCATAATCCAAACTCTGTGTACGGCTTATTGCATATAGGAACTCCCTATCGTAACAGAGAGCTCGAC	69	-	chrX	5771195	5771264	5771195..5771264	CG3016-RA,	FBgn0029819,	CG3016,	1	.
CG12780-RA	TTTCACTGTTCGGATTCCACGGCAGACTAAACGAACCAATTGTTGATCTTGGGAATCAGACATGGGCGG	69	-	chr2R	4439604	4439673	4439604..4439673	CG12780-RA,	FBgn0033301,	CG12780,	1	.
CG12517-RA	TCTGACCATGACCTTGCGCTATGCCTTCGGCGAAATTCTGCTGGACACAAGTCGAAAATGCCGTC	65	+	chr2L	10870547	10870612	10870547..10870612	CG12517-RA,	FBgn0032311,	CG12517,	1	.
CG30458-RA	ACCGCAACTAAGTCTGTGTCCCCCAATTGTTGACTAATGTGATAGGCCCCAGGCAATGTTCACCTTGCC	69	-	chr2R	13045891	13045960	13045891..13045960	CG30458-RA,	FBgn0050458,	CG30458,	1	.
CG13185-RA	CAGTTTGACGGTCCCCGCTTGGTAAATGCTCTGAACTTCGCTCAGGACAAGACAAAGATCGCCGG	65	-	chr2R	7756085	7756150	7756085..7756150	CG13185-RB,CG13185-RC,	FBgn0033661,	CG13185,	1	.
CG1126-RA	CCTCTACATCCTGGCGGTAAGCAACGAGACCCGCTTTGAGTTCCTTTTCACCGACGTATCTGGGGAAAC	69	+	chr3R	642496	642565	642496..642565	CG1126-RA,	FBgn0037280,	CG1126,	1	.
CG6717-RA	GCCCTCAGCTGACTTAAATGGGCTCGTCCTAGAATCTGGTGCTAAGATCGATAAAATTGTGCAAAAGGC	69	+	chr2L	7582921	7582990	7582921..7582990	CG6717-RA,	FBgn0083141,	Spn7,	1	.
CG12376-RA	TCCATGGTTTCAGGAGGCCTGATCTGCTACACGAGTCCCTTCAAGATGAACGCGTACGAAAGTGTTCGG	69	+	chr2R	4590211	4590280	4590211..4590280	CG12376-RA,	FBgn0033323,	CG12376,	1	.
CG12929-RA	GCGCTATTGGATACCCTTCGGTCTCAACCAGTGCGGGAGTGCTCTGTACGTTTGGACGCTCCAGA	65	-	chr2R	5473893	5473958	5473893..5473958	CG12929-RA,CG12929-RB,	FBgn0033429,	CG12929,	1	.
CG32773-RA	AGTGTCCTCGGGCAAAAGTGACACCAAATTGTCGGCTAATCTGTCGATGACTTTCACCCTCGAAAGCGA	69	-	chrX	4281913	4281982	4281913..4281982	CG32773-RA,	FBgn0052773,	CG32773,	1	.
CG8588-RB	CACACTTGTGAGATCGTAGAAGCCGTAAGGGTGTACTTCATGTCCCTGAATCCAAATGCGTTCCCGGGT	69	-	chr3L	7350691	7350760	7350691..7350760	CG8588-RE,CG8588-RF,	FBgn0035770,	pst,	1	.
CG9523-RA	CCGGATCTGGAGATCTACCGTGACCCATCTAGATGCATTGATATTAGACAATTCGTTAATTTATTATTT	69	+	chr2L	6426099	6426168	6426099..6426168	CG9523-RA,	FBgn0263278,	l(2)k11101,	1	.
CG9670-RA	CCTCATCGACTCGTAGAAGTCCCCAGCAACGACTGTTCCGGATCGGACATCATACGGGTGAACAGG	66	+	chr3L	19291188	19291254	19291188..19291254	CG9670-RA,CG9670-RB,	FBgn0028380,	fal,	1	.
CG7772-RA	TACTCCACGGTGATAGTTCTTAGATACTAAGAGTTTACATGAACTGTAGCAAAGCTTTAGCCCCAA	66	-	chrX	17800085	17800151	17800085..17800151	CG7772-RA,	FBgn0030883,	CG7772,	1	.
CG31169-RA	GCGCCCCCATAGCCATATCAAGACGGAAGAAACTGGCCATCACGAGTGGGATTGGCTAATGAACAATGA	69	+	chr3R	18210837	18210906	18210837..18210906	CG43343-RA,CG43343-RB,CG43343-RC,	FBgn0263048,	CG43343,	1	.
CG32988-RA	GCATTGACCTTGTTATGCTGGGGATTGGTGCTGGGATCCTTGTTCTTTCTCACCCTGTTCGGAGCGTAT	69	+	chr2L	8865200	8865269	8865200..8865269	CG32988-RA,	FBgn0052988,	CG32988,	1	.
CG17686-RA	CGAATAATCTAAACGCAGGATTCCTTGGTAATGCTGATTAATTTTTTCCGTGTATTTTGCGACACACTG	69	-	chrX	21496002	21496071	21496002..21496071	CG17686-RC,CG17686-RB,CG17686-RD,CG17686-RE,CG17686-RF,CG17686-RH,CG17686-RI,	FBgn0024807,	DIP1,	1	.
CG9181-RB	TGCCTGGTGGACTGTTGCCTGGTACTTATCGACAAGTACGGAGAGTGCAATGTGTCCAAGGTGCTC	66	-	chr3L	1345599	1345665	1345599..1345665	CG9181-RC,CG9181-RB,CG9181-RA,CG9181-RD,	FBgn0003138,	Ptp61F,	1	.
CG17078-RA	ACCCGAACGATTCGACGGTCTCTAATGACGAAACCATGTCACTGTCCAGCGTAACGCCATCAAGTGCAA	69	-	chr2L	276200	276269	276200..276269	CG17078-RB,	FBgn0086855,	CG17078,	1	.
CG11081-RD	GTATCGAAAATGGGTAGATCGCTATTATAGAGACATTCGGGATATGTCCCCCATTTCAGATCAGGACAT	69	-	chr4	1035236	1035305	1035236..1035305	CG11081-RB,CG11081-RC,CG11081-RD,CG11081-RA,CG11081-RE,	FBgn0025741,	plexA,	1	.
CG31139-RA	GCACTTCCTATCCGGCCTAAGTGGTCCGGTGTTTTCCTATTCCATCACGAATCGCCACCTGGACATCAT	69	-	chr3R	18574155	18574224	18574155..18574224	CG31139-RA,	FBgn0051139,	CG31139,	1	.
CG7967-RA	CCAGGCACACATCGAGAACTACGCCTTGAAACTATTCCTGTACGCCGACAAACAGGATCGCGAGGAGAA	69	-	chr3L	1652340	1652409	1652340..1652409	CG7967-RA,	FBgn0035251,	CG7967,	1	.
CG33133-RA	GGGCATCAAAACAGAGCGACAGTCACCCGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGA	69	-	chr2R	16898797	16898866	16898797..16898866	CG33133-RA,	FBgn0001133,	grau,	1	.
CG10181-RA	CTGACCCTCGATGGAGTAAGGACCAAATTGGGCATAGTCTCTCAAGAACCCACTCTCTTCGAGCGCTCT	69	-	chr3L	6234146	6234215	6234146..6234215	CG10181-RA,	FBgn0004513,	Mdr65,	1	.
CG16762-RA	GATCGGTTTATTGGTTTTGTCTCCTGCGGAGGGTATCAGCCGACCATTGCCTCCATACGTGGGTC	65	-	chr3L	2475482	2475547	2475482..2475547	CG16762-RA,	FBgn0035343,	CG16762,	1	.
CG7659-RA	CCAAGGAGCTCTTCGATGCTCTTTTCGTGAATCCACAGCCGTATCCCTTGTTCGGACGAATGTTCCCCT	69	+	chr3L	17353592	17353661	17353592..17353661	CG7659-RA,	FBgn0015550,	tap,	1	.
CG7095-RA	CCTGGAGAAGGAGTACTCGCACGAGAATATTCGCTTCTGGATAGCAGTCAATCGATTGCGCCGTTCCGC	69	+	chrX	18716432	18716501	18716432..18716501	CG42450-RA,	FBgn0259927,	CG42450,	1	.
CG17608-RA	GGGGCAGTGGTGATAATGAACCACCAAAGTGCTGTTGATCTTTGCGTTCTGGCCTATTTGTGGCCTGTG	69	-	chr2L	8450571	8450640	8450571..8450640	CG17608-RA,CG17608-RB,CG17608-RC,	FBgn0026718,	fu12,	1	.
CG7082-RC	TCCAAGCCGTTGAATGCTTCTTGGCCAATGTAAAATCTACCATCCAGACGGAGCCTATTACGTGGCCAA	69	+	chr2L	2224580	2224649	2224580..2224649	CG7082-RA,CG7082-RC,CG7082-RB,CG7082-RD,	FBgn0031401,	CG7082,	1	.
CG6167-RA	CAGGAGCTGGACGATGATGAAATCGAGGCCAACAATCATCCGCATTCCACTCCTTCGCAAGTCGATTGC	69	+	chr2L	12698449	12698518	12698449..12698518	CG6167-RA,CG6167-RB,CG6167-RC,	FBgn0032447,	PICK1,	1	.
CG10192-RA	GAAGAAGCCTACTCCCGGTTTGGCGACGATTTTCCTGATCTGCTGGTGGATGTACCAAACGGCTG	65	-	chr3R	19636850	19636915	19636850..19636915	CG10192-RA,	FBgn0260634,	eIF4G2,	1	.
CG1695-RB	AGGATCAGGAGGACCATGATCAACGCGAAATGCCACGACTCAGCGAGAAACTTGTTTTGGAGTTCCAAA	69	+	chrX	20313019	20313088	20313019..20313088	CG1695-RB,	FBgn0031116,	CG1695,	1	.
CG16710-RA	GAACGCGGACGAGTGCTCATTGAGTGAACCATCCTTGGGATTGGACAAGGAGACCCACATATGCG	65	+	chr3R	19509329	19509394	19509329..19509394	CG16710-RB,	FBgn0039101,	CG16710,	1	.
CG31205-RA	TGCCTTCAGTATCCGAAATGGTTCCAGGAAGTGAAACCTCCAATTCAAAGCTTATCGTTGCCGGACTGG	69	+	chr3R	16557878	16557947	16557878..16557947	CG31205-RB,	FBgn0051205,	CG31205,	1	.
CG9077-RA	AGCTCTTCCCGTAGATCCCGAACGTGAACCCGTGGCTATCCTGAAGTCCGAGATCATCAAGACAGA	66	-	chr2R	7147098	7147164	7147098..7147164	CG9077-RA,	FBgn0033600,	Cpr47Ec,	1	.
CG32513-RA	GACACTTGATTGCACATGAATTAGTTTCAGTTTGAGTGGGGTTTTCAATTGAACACGATCAGAAAGCCA	69	+	chrX	20949115	20949184	20949115..20949184	CG32513-RA,CG32513-RB,	FBgn0031150,	bves,	1	.
CG32549-RA	ACGTGCATCCGCGATGTGACACACAAGATGGACATGTCCTACGGTATGATGGGCTCACTCTTCCG	65	-	chrX	18285331	18285396	18285331..18285396	CG32549-RD,CG32549-RE,CG32549-RC,CG32549-RA,CG32549-RB,CG32549-RF,	FBgn0052549,	CG32549,	1	.
CG9242-RA	GCCCAACTGGCAGGATCTTCTCTTCCTCGCCAAAATCATACCGCGAATTCTGCACAACGTGAACAGG	67	-	chr2L	21175393	21175460	21175393..21175460	CG9242-RB,	FBgn0000239,	bur,	1	.
CG10309-RA	TGGAAGCAATGGCACGTCCACCAACGAGTTCAAGCGATTGATAACCCAGACAAAGCCACAACCGC	65	+	chr3R	12169797	12169862	12169797..12169862	CG10309-RB,	FBgn0038418,	pad,	1	.
CG7807-RA	GGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAGCCGAAGTACAGCGTCGACTC	69	+	chr3L	21605165	21605234	21605165..21605234	CG7807-RA,CG7807-RB,	FBgn0261953,	AP-2,	1	.
CG10128-RC	TTGACTGGCAGTTTGGAAAAAAGGTTCAACTGTCATAGGGCCCTTTCATTTGGATTTGCCCCCTCAGC	68	-	chr2R	10491350	10491418	10491350..10491418	CG10128-RC,	FBgn0003742,	tra2,	1	.
CG5916-RA	GCCCTGGCCAATCTATTCCGGGATACCATGATCCAGGACAACATTGTGACGGACTGTCATGGCTTTGTT	69	+	chr3R	11974341	11974410	11974341..11974410	CG5916-RA,	FBgn0038401,	CG5916,	1	.
CG8216-RA	AGAGCGGGCTTTCCACTAGTGATGATGTACTAACGTGACCACTATGAGCATTTTTCCGAGGTGGGCA	67	-	chr2R	4852957	4853024	4852957..4853024	CG8216-RA,	FBgn0033358,	CG8216,	1	.
CG14636-RA	ATTGCGCTTTGGACGGAACCTTGACCCCTCTAAGGTGCGAGTGATAAACTTCAAGTCCAGCACGG	65	-	chr3R	31291	31356	31291..31356	CG14636-RA,CG14636-RB,	FBgn0037217,	CG14636,	1	.
CG17667-RA	GACCTCCATCGACACGATTAGCTTCCTCAACTACGACATCAGCTGCTACGAATTCGTACTGGGCACCCC	69	+	chr3L	12787994	12788063	12787994..12788063	CG42709-RB,CG42709-RA,CG42709-RC,	FBgn0261674,	CG42709,	1	.
CG7933-RC	CCATGATTTTATTGGAAATGGCATTTAAAATTGAGAAATGCTCTGAAAGGCAGTTAGTCTGTAGCTTTG	69	-	chr3R	25864442	25864511	25864442..25864511	CG7933-RC,CG7933-RB,CG7933-RA,	FBgn0001280,	janA,	1	.
CG8226-RA	TATCCGAGGGAGTTAAGGATCGTTTGGGATTTGTGGTTGGAGTCGTCCAGACTGGATTCCACTGGGGAT	69	+	chr2R	4839304	4839373	4839304..4839373	CG8226-RA,	FBgn0033357,	Tom7,	1	.
CG10267-RA	ACACCATCGAGTACTTGGAGGACAACTACACCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGG	69	+	chr3R	2283524	2283593	2283524..2283593	CG10267-RA,CG10267-RB,	FBgn0037446,	Zif,	1	.
CG11094-RA	TCCCCGAAAAACGTTTCTAATTGATCTCAAGCAACTGAAATAAACAAGCATAAAACAGTGAACTAAGCC	69	-	chr3R	3750828	3750897	3750828..3750897	CG11094-RA,	FBgn0000504,	dsx,	1	.
CG31749-RA	CCACACTTTGCTCTCAAATAGTTGCTCTCTCAAAAAAGTTACACAAATCTCAAAAGGCGCACAACAAAA	69	+	chr2L	18386576	18386645	18386576..18386645	CG5803-RC,	FBgn0000636,	Fas3,	1	.
CG4959-RB	ACGGGCCGTATGGTGGACATTGTTAGCCTGCTTAGAAGGAATGTAGGGTTTCTTTATCCGCGATCTGGA	69	-	chr2L	16134862	16134931	16134862..16134931	CG34168-RA,	FBgn0085197,	CG34168,	1	.
CG4561-RA	TGGCGGCGATGTTACCTTCCTGAAATACGAGGATCTGGAGAAGTACTACGCGGAGGACAAACTGCACCC	69	-	chr3L	16411358	16411427	16411358..16411427	CG4561-RA,	FBgn0027080,	Aats-tyr,	1	.
CG12161-RA	CCACGCATTATGTTCAACGGCTTACCAACCTTGATGAAATACCCAGACCGATCGCCTTTTCTGTGCGGT	69	-	chr3R	1045098	1045167	1045098..1045167	CG12161-RA,	FBgn0037296,	Prosbeta2R2,	1	.
CG2774-RA	GCTATGCGCGCTATTAACTAATTCTGCGGGACCAAATTCGATCTTAATCTTGCGATTTGGAGCTACAAC	69	+	chr2L	3451617	3451686	3451617..3451686	CG2774-RA,	FBgn0031534,	CG2774,	1	.
CG16912-RA	TTCAGGGTGCTACTATGGTGAACCTGTTGACCGAGCCAGGAATGTCCATCCTAGAGCTCGCCATG	65	-	chr2R	20669566	20669631	20669566..20669631	CG16912-RA,	FBgn0035064,	CG16912,	1	.
CG10462-RA	TACTTACGCAGTGAGGACCCGCTCAACATTTTGTCCCAACGTGATCAAACCAACTCAACCCCGCC	65	-	chr2L	19732758	19732823	19732758..19732823	CG10462-RA,CG10462-RB,CG10462-RC,CG10462-RD,	FBgn0032815,	CG10462,	1	.
CG18554-RA	GGGCAAGATGATCCCTTCGAAGGAGCTCGATAAGGAGCATTCTCATCCCAATGGCCCGCAACAGC	65	-	chr3R	8343728	8343793	8343728..8343793	CG42244-RF,CG42244-RG,	FBgn0250910,	Octbeta3R,	1	.
CG13337-RA	AAGTGCGAGGCAGAAAAGGAATGTGGAGATAGTTGCGTTCAAAAGAAGTGGAAAGAGGCATGCCCCACT	69	+	chr2R	9553824	9553893	9553824..9553893	CG13337-RA,	FBgn0033863,	CG13337,	1	.
CG13325-RA	CGGCCATTGTGAAGATCTGTTCAGCCCGGTCCAATTCTCGAGCCCTATTTCGCGTTGTAGAAAGCCATT	69	+	chr2R	9011556	9011625	9011556..9011625	CG13325-RA,	FBgn0033792,	CG13325,	1	.
CG18803-RA	TTATGTGGAACTTTGGAGTGGTCGGAATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAG	65	+	chr3L	20426793	20426858	20426793..20426858	CG18803-RA,CG18803-RB,CG18803-RC,	FBgn0019947,	Psn,	1	.
CG32975-RA	CTATGGTCGTTGACAGACTGTGCCTTATCATATTCACAATGTTCACAATATTAGCCACAATAGCTGTAC	69	+	chr2L	14089159	14089228	14089159..14089228	CG32975-RB,CG32975-RD,CG32975-RF,CG32975-RG,	FBgn0028875,	nAcRalpha-34E,	1	.
CG15102-RA	GGTCCAACATTGAAGGAACCTTATCGGGAGAACAAGGCCATCCTACCCTTCGACATCAGCGTAAAGCCA	69	-	chr2R	14745160	14745229	14745160..14745229	CG15102-RA,CG15102-RC,	FBgn0034405,	Jheh2,	1	.
CG4312-RA	ATACATACAAGATGGTTTGCAAGGGTTGTGGAACAAACTGCCAGTGCTCGGCCCAAAAGTGCGGG	65	-	chr3R	16329137	16329263	16329137..16329166,16329227..16329263	CG4312-RA,	FBgn0002869,	MtnB,	1	.
CG14048-RA	TGCGTTTCCCTTGAGTTTAATGAATTAAATAAAATAGGAACTACAATAATACCTGCGAATAATGGCGCT	69	-	chrX	2238560	2238629	2238560..2238629	CG14048-RA,	FBgn0040389,	mRpL14,	1	.
CG13291-RA	ACAGTCGCAGCAACAACACAATGCCAACACGAAACCTTCCAAGAGCTGGAATTGGACTGGGAATAGGAA	69	.	.	.	.	.				0	no match
CG6744-RA	ACCGGGATGCGTACATTCGGAAGAACGTGGTACCGCGGGAATACAGAAAGCATTTCCCATTGGTCATGA	69	-	chr3R	7260053	7260122	7260053..7260122	CG6744-RA,CG6744-RB,	FBgn0037901,	CG6744,	1	.
CG12334-RA	AGGCCGGCAGCTACATAAGACCTTCGTACCAAATCCAAAACGAAAACCCATTTTTCGCTCCGTTTCGAT	69	-	chr3R	13550657	13550726	13550657..13550726	CG12334-RA,	FBgn0038539,	Atg8b,	1	.
CG4547-RA	CCCCAGCCTGGTGACACTCACCTTCAGCTACGACACACACCACGCCAAGATGGACTTGCAGGTGC	65	+	chrX	6717622	6717740	6717622..6717671,6717724..6717740	CG4547-RB,	FBgn0029907,	Atx-1,	1	.
CG31246-RA	AGCCCGGGGAAAAGGATTAAATATGCAGCACAAGTCGAGACCAGGAAGACTCTTAGTCACACGGAAGGA	69	+	chr3R	13662644	13662713	13662644..13662713				0	no match
CG12680-RA	ATGCAGGAGTGCCTCATAGAGAATGAGATGACCAATGGCTTTCTGAACGATATCCTTCGCACACGAC	67	+	chrX	4892012	4892079	4892012..4892079	CG12680-RB,	FBgn0029740,	CG12680,	1	.
CG17186-RA	CGCAGACATGCCAGAGAACGGAAACACTGACGATAGAGGCTCTAGATTTCATCTACGAGGACGAAATGG	69	-	chr3R	15703066	15703135	15703066..15703135	CG17186-RA,	FBgn0038741,	CG17186,	1	.
CG10061-RA	ATACGCTCTGGATGAGAGCTACGCCTCTAGTAGTTCTGTGGAATCGGAGGAAGTTCAGCCGCCCG	65	+	chr3R	2979201	2979266	2979201..2979266	CG10061-RA,	FBgn0011020,	Sas-4,	1	.
CG12814-RA	GCGTGTGCACAAGACCCTGGAATTGGCGGACGATAAGTTTTATGTGATTACCTGTGGCAAATCGGGCTA	69	-	chr3R	6000439	6000508	6000439..6000508	CG12814-RB,CG12814-RC,	FBgn0037796,	CG12814,	1	.
CG13306-RA	GGTGGATCCAAGGAGCCGTATCACTTCCAATGGTGGGCCTACATCTACACCTGTTATGCATACGCCGTG	69	-	chr3L	8742434	8742503	8742434..8742503	CG13306-RA,	FBgn0040828,	CG13306,	1	.
CG8314-RA	CCGCCGGCCACTATATTCCTGCTGCTTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATC	69	-	chr2R	11877719	11877788	11877719..11877788	CG8314-RA,	FBgn0034057,	CG8314,	1	.
CG2162-RA	GGCGCATCATGAAACAAACCTTCAACTCAGATGTGCTGGAGATTCCCGAGAAAATAGAGACATCGGCAA	69	+	chr3L	3038982	3039051	3038982..3039051	CG2162-RA,CG2162-RB,	FBgn0035388,	CG2162,	1	.
CG3691-RA	TGCACCTAATGCGTGACATTAAGAAAGAGTGCGACTATTTGGGCATCCCTGATCCCGTACCGGCTACCA	69	+	chr2R	20558448	20558517	20558448..20558517	CG3691-RB,CG3691-RA,CG3691-RC,	FBgn0035047,	Pof,	1	.
CG11331-RA	AAAGCAAAGACCCGAGGAAGATCGAGACGCAGAAGCTTAGGGAAGCACAGATGACAAAGATGGGCGGA	68	-	chr2L	6673157	6673225	6673157..6673225	CG11331-RA,	FBgn0028990,	Spn27A,	1	.
CG10975-RA	CCGCGATACTGGGCAGATGATGAGGTTCAATACGATCACATACTCGTGAAATACGTGCACAGCGAAAGT	69	+	chr3L	12733476	12733545	12733476..12733545	CG10975-RA,CG10975-RB,	FBgn0014007,	Ptp69D,	1	.
CG13563-RA	CCGCTCAACACGATTGAGTACAGTTCCCCTCCGGTAAACGCACCTATTGGTTTCAGTTCAGCCCCAG	67	+	chr2R	19943563	19943630	19943563..19943630	CG13563-RB,	FBgn0034966,	CG13563,	1	.
CG14827-RA	CTGCTCCAGCTATGCAACTTAGCGATCTAAGCCTCACACCCGATGAGATCCAAACTCCGGAGCGG	65	+	chr3L	7238121	7238186	7238121..7238186	CG14827-RA,	FBgn0016036,	mei-P22,	1	.
CG10484-RA	GTGGTATCCCAATACGGACCCAAGTTCCAACTGGACCACACATTCACCCTGATTATCCGGCTGCG	65	+	chr2L	19053128	19053193	19053128..19053193	CG42641-RA,	FBgn0261396,	Rpn3,	1	.
CG6829-RA	CGGCACACTTCGCTTGTTTTGGACACTGCTCTCTAAACAGGAGGAAATGGTCCAGAAATTTGTGGAGGA	69	+	chr2R	12909072	12909141	12909072..12909141	CG6829-RA,CG6829-RB,	FBgn0024252,	Ark,	1	.
CG10215-RA	ACGACATCGTGCCCGATTATGTGGTCGGTCGAACATCCTGCGTGCTGTACCTCTCGCTAAAGTACCATA	69	+	chr2R	10740728	10740797	10740728..10740797	CG10215-RA,	FBgn0028434,	Ercc1,	1	.
CG9815-RA	CGTCCGCTGATCGACAGCATTTTCGAGATTCCAATTTCGACGCTGCGTGCTGTTAACAACCTGGTGG	67	-	chr2R	19309377	19309497	19309377..19309417,19309470..19309497	CG9815-RA,CG9815-RB,	FBgn0034861,	CG9815,	1	.
CG2146-RC	GGGGCGATATTTGCATGTGGGAGACTGGCATGATAATCCGCTACAATATCGGCTGCATTGAGGATTGGG	69	+	chr2R	3394796	3394865	3394796..3394865	CG2146-RC,CG2146-RA,	FBgn0261397,	didum,	1	.
CG15706-RA	ACGCCTGCCTTGATCATCATGTGCGTGTTCAGTTTGCTCGATCTGTTCAGTGTGTCCAAGCTGAAGCTG	69	-	chr2R	12111527	12111596	12111527..12111596	CG15706-RA,	FBgn0034093,	CG15706,	1	.
CG17150-RA	TCGGGTCCCCTTAAGTCCCACTCGCTTGAATTCCATAGAGTATGTCTCCAGTTTCCCGTTGAGTCCCCA	69	+	chr3L	4893224	4893293	4893224..4893293	CG17150-RD,	FBgn0035581,	CG17150,	1	.
CG15578-RA	CCCAACCTACTTAAGTCCATTATAATGGTCCTGGAGCATACTAGCCGACCCATGACTGACACAGAGCTG	69	-	chrX	4171784	4171853	4171784..4171853	CG15578-RA,	FBgn0040905,	CG15578,	1	.
CG8253-RA	TAAACCAGCTCCTCTCGTGTCTCGTGCAATCTCCCAGTCCCCAGTGACAATTAGCTCCATCTCCG	65	+	chr2R	11736926	11736991	11736926..11736991	CG8253-RA,	FBgn0034046,	tun,	1	.
CG31712-RA	TGGCAGCCAAGTTAAGCCCTTCGACTAGCTCGAAATCTTATACAATCACACAATCCAGCACCATGGGCT	69	-	chr2L	9937998	9938067	9937998..9938067	CG31712-RA,	FBgn0051712,	CG31712,	1	.
CG12958-RA	GTCAATGAGCTTCAAGAAGATTTGTCCATGAAGAAGTTCGACCTGCGAGCCAAGCAGATCCATTTGGCG	69	+	chr2R	11311826	11311895	11311826..11311895	CG34365-RC,CG34365-RF,CG43223-RG,CG43223-RI,	FBgn0262868,	CG43223,	1	.
CG7876-RA	CCGTCGAACCAAGTGCCGAAAAACGAAACCCCAAACGAAATGTTTAAGCTAACGATGCTGATGGGC	66	+	chrX	19109556	19109622	19109556..19109622	CG7876-RA,	FBgn0031000,	Muc18B,	1	.
CG3845-RA	TGTGACCACTCCAGATCGCTTCACCAAGCTTGTAGATGGTTTCCTCGAGCTTAAGCTGCCAGAGAAGGC	69	+	chr2R	8809440	8809509	8809440..8809509	CG3845-RB,CG3845-RA,CG3845-RC,	FBgn0010488,	NAT1,	1	.
CG4994-RB	GGCCACACATGCGAATATGATATTAATGCTGTTTCAATTGTCTGACCCGATACCCAAGAAAGCACTCTG	69	+	chr3L	14533440	14533509	14533440..14533509	CG4994-RA,CG4994-RB,CG4994-RC,	FBgn0026409,	Mpcp,	1	.
CG17085-RA	ACTTTCGCCGGGAATGTGAGCGATGATGGCGTCTGCCCGCAGTTGGATTGCATAACCATATTGAG	65	+	chr2L	10851622	10851687	10851622..10851687	CG43129-RC,	FBgn0262599,	CG43129,	1	.
CG2207-RA	GCTGATATTTAAGGCGTGCTTGGTGATCCAAAAACCCTCAGTTACAACGTGTTTTCTCGCTTCGCGTTT	69	-	chr2L	21629720	21629789	21629720..21629789	CG2207-RF,CG2207-RA,	FBgn0022893,	Df31,	1	.
CG32266-RA	TACGGAGCCTATCCCTACAGCTCGCTGTACCTGAGACGCTGAAGTTCCCACACCATCGAATGCAC	65	+	chr3L	3791266	3791331	3791266..3791331	CG32266-RA,	FBgn0052266,	CG32266,	1	.
CG7705-RB	ATTTTAACTACATTTAGTGTTGAATAAAATATAGTCTTTCTAAACAACAAAAGGTGAAACATGCAGGAG	69	-	chr3R	14503206	14503275	14503206..14503275	CG7705-RB,CG7705-RA,	FBgn0038639,	CG7705,	1	.
CG6176-RA	TCTCCATCGTTTTAGCCGAAAAAGTTCTGTTCGTGGGACAAACAGTGCTGGTCTTCAAAATGGGGCGCA	69	+	chr2L	10484323	10484392	10484323..10484392	CG6176-RA,	FBgn0026431,	Grip75,	1	.
CG6885-RA	TTCCACTGGAGGCGTGTGTCATCAGAAGGATGAAGGTGACGGTCAAGAGATTTTGCGTCTCGCCTAAGA	69	+	chr3L	18738134	18738203	18738134..18738203	CG6885-RA,	FBgn0036810,	CG6885,	1	.
CG6790-RA	GCTGCGGTAATGATTGCGTCGATTTACTGCAACTGTCCTTTGAGCTTGGCCTATATCCTCTGTGTTGGC	69	-	chr3R	7402747	7402816	7402747..7402816	CG6790-RA,	FBgn0037915,	CG6790,	1	.
CG32499-RA	TGGCTACAGGAGGACTTTTCGCGCTACTACGAACAGAACAAGGCTCCATACATGATGCCCTTCCACACT	69	-	chrX	21990365	21990434	21990365..21990434	CG32499-RA,	FBgn0052499,	Cda4,	1	.
CG13394-RA	CGCCTGACCAAGCAGATTAGGAACGGTCCACGAGCTCAAGGACTGATTCTGCTCTCATCGAGTCCATTG	69	-	chr2L	8388885	8388954	8388885..8388954	CG42819-RA,	FBgn0262001,	CG42819,	1	.
CG2199-RA	ACGCCGCCAAACTACAGTGCACCCTATGCAAGGAAGTCTACCAGAACCAAATGGATTACGTGGCTCACT	69	-	chr3L	1339928	1339997	1339928..1339997	CG2199-RB,CG2199-RA,	FBgn0035213,	CG2199,	1	.
CG2841-RC	CGTATAGAAAAACCACTGGATCAGGACCAAAACTCCCTTCAAAACCATTCCTCTACATTGCCGCGTCCA	69	-	chrX	2240130	2240199	2240130..2240199	CG2841-RB,CG2841-RC,CG2841-RA,CG2841-RD,CG2841-RE,	FBgn0003159,	ptr,	1	.
CG31179-RA	GGGATGGATGGCTCAAGGGTGGACCAACCAGAAGAGGCAGGTTGCTGGTATTATGGTAGGTTAGGTTCA	69	+	chr3R	17325429	17325498	17325429..17325498				0	no match
CG18740-RA	CCTTCGGGCGATAAGTCAGCCATCAAGTCAGACAAATCAAACAAATCCTCACCCACAGAAACCGC	65	-	chr3R	11795117	11795182	11795117..11795182	CG18740-RA,	FBgn0002783,	mor,	1	.
CG17567-RC	CGAAACACGTTCAACCATATTGTACCTGAAACACTCGTAGATACCCAACATGTCCCAATAAACGAATTT	69	-	chr2L	19183102	19183171	19183102..19183171	CG17567-RA,CG17567-RB,CG17567-RC,CG17567-RD,	FBgn0040994,	CG17567,	1	.
CG15523-RB	GAGCGTCAGCAAATCCTTACAGTTCCCCTCCGATTCGGACAATCTCTAGGACTGCACTACCTCAGCGGA	69	+	chr3R	25772657	25772726	25772657..25772726	CG15523-RA,	FBgn0039727,	CG15523,	1	.
CG13215-RA	TCGTTGTGATCTCCATGATCTTCGGTTTAAGCCTGATCCAAGCAGCACCCATCGCTAAGGATGCCCA	67	-	chr2R	7127437	7127504	7127437..7127504	CG13215-RA,	FBgn0033592,	CG13215,	1	.
CG8784-RA	CGACTTAATACTGTTGGTCTCAGGCATCCCCCAGGAGCTGTACAACCTTTGGTATCCGGATATGT	65	+	chr3R	9166346	9166471	9166346..9166369,9166429..9166471	CG8784-RA,	FBgn0038140,	CG8784,	1	.
CG7978-RA	AGCACAACGTGGTCATTTTGGTGGAGTTTGCGATTGCTTTGATGTCCATACTGGACTCGATTAATCGCG	69	+	chr3L	19969209	19969278	19969209..19969278	CG7978-RA,CG7978-RB,	FBgn0004852,	Ac76E,	1	.
CG12975-RA	CCGGAGACAGGTCGTGTGTTTCCCATCAGCGATGGTATACCAAACATGCTCCTTAACGAGGACGAGGTC	69	-	chr3L	21209231	21209300	21209231..21209300	CG12975-RA,	FBgn0037061,	CG12975,	1	.
CG15506-RA	GCATCACTTGCATACTTAAGTCCAAGGAAACAGATCACAAGCAAACGGGGAAATCAAATCACACGGCCA	69	+	chr3R	25544747	25544816	25544747..25544816	CG15506-RA,	FBgn0039686,	CG15506,	1	.
CG8590-RA	ATGACAGCTTCCAGATAGTGGATGGCAACGAGACAGTGGTACTAAGCGATGTCAGCGACGATCCC	65	-	chrX	2494421	2494486	2494421..2494486	CG8590-RA,	FBgn0011606,	Klp3A,	1	.
CG7763-RA	GGCACTTCAACGAACTTGCAGCTGGAAAATCAAAATACTTCGCAACAACTGCTGACACACGGTACAGCA	69	+	chr2R	7302346	7302415	7302346..7302415	CG7763-RA,	FBgn0040503,	CG7763,	1	.
CG14526-RA	GAGAATGTGCGATATACAAGCCTACTTGGGGCCAAACAGATGCGGGAGATGCTTCACAAGCCGGC	65	+	chr3R	24710791	24710856	24710791..24710856	CG14526-RB,	FBgn0027578,	CG14526,	1	.
CG13251-RA	CGCACCATCACGAAACCCATTAAGCAACCCAGGGATTCCAGAAAAGAGGACCCGAAAGAACCAACCCAA	69	+	chr3L	20632563	20632632	20632563..20632632	CG13251-RA,	FBgn0037014,	CG13251,	1	.
CG1401-RA	TGCTCTGCGTAGCTCTAGATATTATGTTTTGTGCGCTACATGCACCCTGGAAATTCCGAACCCACGCCC	69	-	chr3R	24885308	24885377	24885308..24885377	CG1401-RA,	FBgn0039632,	Cul-5,	1	.
CG31782-RB	ACCGCACCAGTGTCCACTCTGCTACTGGGCCTTTAAGCAAAAACACCATCTCGTACGACACATGATCGT	69	-	chr2L	16700125	16700194	16700125..16700194	CG31782-RB,CG31782-RA,	FBgn0051782,	CG31782,	1	.
CG8629-RA	AAAATGGTCAGTTTTGAGGAAGCCGCCGAACTCGCCAAGAACTTCTCCAAGAAGCCCACCGACTC	65	-	chr3L	7121267	7121332	7121267..7121332	CG8629-RA,	FBgn0035742,	CG8629,	1	.
CG6311-RB	GGATCCCGCAGTGACTGTTTTGCGTTAGGAGTAGAAACGATGACCAGACCTTAAAGGGATGTTGGTGGC	69	-	chr3L	17518770	17518839	17518770..17518839	CG6311-RB,	FBgn0036735,	Edc3,	1	.
CG8571-RA	CGCCGACCCAAACTTTTGCCTCACTCTCATTGATTTCGTAGATGCCATTAAGGTGATGCAGCCTTCG	67	+	chr3L	7377356	7377423	7377356..7377423	CG8571-RA,CG8571-RC,CG8571-RD,CG8571-RE,	FBgn0016983,	smid,	1	.
CG17198-RA	CGGCCATCGGTAGCGCAGTGGCCTTATTTGATAACTTCATGTTGGCCCATAAGCACGGTGTTGGATTTT	69	-	chr3R	21599482	21599551	21599482..21599551	CG17198-RA,CG17197-RB,	FBgn0039366,FBgn0039367,	CG17198,CG17197,	2	.
CG15180-RA	TGCCATGGCAATGATGAAGCTGATGTCAAAGCTGGTCCAAACACTGGATTGCAATCTAGCTTTCCGCTT	69	-	chr3R	2434116	2434185	2434116..2434185	CG15180-RB,	FBgn0250846,	glob2,	1	.
CG15236-RB	TAAAAGCAAACAACGTTCTCCTCATTTGCATGCATGTTATTGTTTCGCGCTTCTTTGGAAATTAAGCCA	69	+	chr2R	2725081	2725150	2725081..2725150	CG15236-RB,CG15236-RA,	FBgn0033108,	CG15236,	1	.
CG14001-RA	ACGGAGGTATCTTCGCAGGACAAACCCGACACCGTCTCTTTGGAAGGCAAGGACAATAAGGACGACAAA	69	+	chr2L	5920047	5920116	5920047..5920116	CG14001-RA,	FBgn0043362,	bchs,	1	.
CG33096-RA	CCGAACCCGAAGTCTGAACCCAAAAACTCCGTTAGTCCTTTGTTGATGGTAATCGTGCATTTGAGGCGA	69	+	chr3R	20923607	20923676	20923607..20923676	CG33096-RC,CG33096-RD,CG33096-RE,	FBgn0053096,	CG33096,	1	.
CG4645-RA	TGCGTACAAATGGCACTACAACTTCCATCTGGTCTCCTATGCGGCTACGTCCATCTTCTTGTATGCCAA	69	+	chrX	12804841	12804910	12804841..12804910	CG4645-RA,	FBgn0030435,	CG4645,	1	.
CG2665-RA	TGGAGGAGGTTCTAGGCTGGACATCAACAGAAGGGTAACTATAGTACCACCCGAAGGCGAACTCTCGTT	69	-	chr2R	21061480	21061549	21061480..21061549	CG2665-RA,	FBgn0011694,	PebII,	1	.
CG16983-RC	TGCGTGGAAATAGTGTCAGTACGTTTAAAGGCATCATCGTAAGGTTAGTCGGAAAACAAATAAAAAGCC	69	+	chrX	550479	550548	550479..550548	CG16983-RC,CG16983-RD,CG16983-RH,	FBgn0025637,	skpA,	1	.
CG8337-RA	CAAGATGAAGACCAGCTACAGCATCAAGCAGGTCCTGAAGACGCTCTTCAAGAAGCAACAGAAGC	65	+	chr3R	21836722	21836787	21836722..21836787	CG8337-RA,	FBgn0002732,	malpha,	1	.
CG14501-RA	GACCCCCAGCGTTAAGATCGACATTAGCACTTGCCAATCGAACCGTCCGATGGAATCGCGAACGG	65	-	chr2R	14079000	14079065	14079000..14079065	CG33958-RA,CG33958-RB,	FBgn0053958,	CG33958,	1	.
CG6871-RA	GCACTGATCCGGATTACAGCATTCGCGATCTGTACAACAGGATCAAGACCTGCAAGTTCCCCAGTTGGA	69	+	chr3L	18820137	18820206	18820137..18820206	CG6871-RA,	FBgn0000261,	Cat,	1	.
CG6775-RA	CGGCGAATCGGTTTTTTTCTATACAGACCTTTACAACTCTAGGCTAGTAAGCAAAACTATGTTTTTTTT	69	+	chrX	5145013	5145082	5145013..5145082	CG6775-RC,CG6775-RD,CG6775-RE,CG6775-RF,	FBgn0086911,	rg,	1	.
CG32474-RA	TCACCATCCGCATATGGGAACCTATGGTGGAGTCTATCATGCGAAGGCAGCAATCGAGCTTAAGGAGGA	69	-	chr3R	21904050	21904119	21904050..21904119	CG32474-RB,CG32474-RC,CG32474-RD,	FBgn0039411,	dys,	1	.
CG10927-RA	GCAGCGTGCTCATATGTCCCAGCTCAGAGATCGGAGTGTCTCAAAGCCTGGAACAACACCTTGAACAGT	69	+	chr2R	14500854	14500923	14500854..14500923	CG10927-RA,	FBgn0034360,	CG10927,	1	.
CG32295-RA	TTCGATCTTCATTTGCAGGATGGTTCGGATTTTGACCCACATTCCAACTCGGGGCGCGTTCGTGT	65	-	chr3L	2525905	2525970	2525905..2525970	CG32295-RA,	FBgn0260480,	CG32295,	1	.
CG7923-RA	CCGGAGTGCTTTACGAATCCGATGTCGAGACAGTAGACGGTGGATTGTCGACGGAGCTAAGCAATCGGA	69	+	chr3L	11016663	11016732	11016663..11016732	CG7923-RA,	FBgn0029172,	Fad2,	1	.
CG17233-RC	GCGCTTCCGGGAGGTCATGCAGTAAAAGCCATTGTTACCAGGACCCATTATCAGTATCAGGAGGTCTCC	69	-	chr3L	20226923	20226992	20226923..20226992	CG17233-RC,CG17233-RA,CG17233-RF,CG17233-RG,	FBgn0036958,	CG17233,	1	.
CG1803-RB	AGCCTGCTCCGCTACGACTATGCGCAGAACAAGGTCTACAAGACAAAGATCGAGGGCGAAACCTT	65	+	chrX	11910143	11910208	11910143..11910208	CG1803-RA,CG1803-RC,CG1803-RB,CG1803-RD,	FBgn0030362,	regucalcin,	1	.
CG7228-RA	AGTTGCTCATCGAGGATGTCGTTCCAATTCACGTCACATACCACCACATTACCTACCACGCATGCCCCA	69	-	chr2L	7987664	7987733	7987664..7987733	CG7228-RC,CG7228-RD,	FBgn0031969,	pes,	1	.
CG8363-RC	GCGCCAGTAGAATGGCCTTCTTCGAGCCCAAGAGGAAGGATGAGTTTGAGTTCATCTCGGGAACCAAGA	69	+	chr3L	19853538	19853607	19853538..19853607	CG8363-RC,CG8363-RA,CG8363-RD,CG8363-RE,CG8363-RB,CG8363-RF,	FBgn0020389,	Papss,	1	.
CG2861-RA	GCCGTCTCCCAGTACATATCCAATGGGTGGTATTCCCTTTCAGAACAATAACACGCTCTATCCCCCGAT	69	-	chrX	4692174	4692243	4692174..4692243	CG2861-RA,	FBgn0029728,	CG2861,	1	.
CG17725-RA	TGGTGTGGCTCCAGGAACCTCAATGGAGACCAATCCCATTGCCATGAACACTGTTTTCAAGAACACCAT	69	+	chr2R	14425782	14425851	14425782..14425851	CG17725-RB,CG17725-RA,	FBgn0003067,	Pepck,	1	.
CG12802-RA	CGACGCTACCAAGGATGAGGTGATTGTCAAGATCACAACAGTTGGAAATGAGGTGAGTGGGCACATCCT	69	+	chr3R	5701893	5701962	5701893..5701962				0	no match
CG31811-RA	TTGAAATTGCTTGATAATCGGTTTAAACAAATGAACACGCCCAAAATGTAGCTTATGCAGAACCAAAAT	69	+	chr2L	13898323	13898392	13898323..13898392	CG31811-RB,CG31811-RA,CG31811-RC,	FBgn0028509,	cenG1A,	1	.
CG6206-RA	GCCAGGTGGTGCGTGTTTACAACAAGGATTCATACGCCGAATTCGAATGGTTGGTTGGACCCATTCCCA	69	+	chr2L	10461127	10461196	10461127..10461196	CG6206-RA,CG6206-RB,	FBgn0027611,	CG6206,	1	.
CG18622-RA	AGCACTCGCAGTCGAAAGAGACCAAACGGCAGCACTAGTAGGCGTTATAGTCGAACTCGGAGGGG	65	-	chr3R	12813571	12813636	12813571..12813636	CG18622-RA,	FBgn0038460,	CG18622,	1	.
CG32536-RA	TTTCCCCTTTCTTTTGTTCGATTTAGTTGATTGGCTACACGAAATAAATCTTGCCTTTCACTCGC	65	-	chrX	19169036	19169101	19169036..19169101	CG32537-RA,CG32536-RA,	FBgn0052537,FBgn0052536,	CG32537,CG32536,	2	.
CG4924-RA	GGACATTCACACCGTAGACACTATGTACAGTGCCATGACGACTTGCCAGGCCCTACATCCTGATTCGGC	69	+	chr2R	13479045	13479114	13479045..13479114	CG4924-RA,	FBgn0029079,	icln,	1	.
CG7177-RA	AGGGATCCCAGCAAGGATCACAGCAATTTAATTTGCCTGGCACACAACAGACTCATCCTCAGCACCAGT	69	-	chr3L	21538188	21538257	21538188..21538257	CG7177-RA,CG7177-RB,CG7177-RC,CG7177-RD,	FBgn0037098,	Wnk,	1	.
CG8145-RA	CCAATGCTCCGGATATGGTGTGCTTTTGCTGCCAGACAGATCTGCAATCGGCCATGATTTTCCGGAG	67	+	chr3R	4549167	4549234	4549167..4549234	CG8145-RA,	FBgn0037617,	CG8145,	1	.
CG7186-RA	ACAGATGTACAACCCGCTCAGAGATTGGATGGCCTACGAGATACCACCAATATTGCGTTTTCCACACCA	69	-	chr3L	21506754	21506823	21506754..21506823	CG7186-RA,	FBgn0026371,	SAK,	1	.
CG14852-RA	CTTGGCCTTCTGGTCCTGTGCTTTTCCAGCTACAGTTTTGCCGAAGACGATCCCACCGATGGAAG	65	+	chr3R	10391694	10391759	10391694..10391759	CG14852-RA,	FBgn0038242,	CG14852,	1	.
CG32179-RA	CCTTAAACTGCATTGCCACATTCCCAAGTAAGCTGCCATGAGTTAAGATCAAGATGCGAGCCCAG	65	-	chr3L	17643620	17643685	17643620..17643685	CG32179-RA,	FBgn0052179,	Krn,	1	.
CG3743-RA	TATTACCACCCCAGATCAAAAGCGATCCATGCCTTAGGGACGTAATAATATATTTATATGTGGGGGACT	69	+	chr3L	9431551	9431620	9431551..9431620	CG3743-RA,CG3743-RB,CG3743-RC,CG3743-RD,CG3743-RE,	FBgn0040305,	MTF-1,	1	.
CG4673-RA	TGGTTGGATTTTCACTGATCTCATCACGGACGATGCGAGTATCGGCACTGTCAAACAGATCCGTGGCAT	69	-	chr3R	21447952	21448021	21447952..21448021	CG4673-RB,CG4673-RA,CG4673-RC,CG4673-RD,	FBgn0039348,	CG4673,	1	.
CG11037-RA	ACCACAAATGCCAAGTTGGGAGGATACCTAACAGCCTTGCTTTATGAAGACGATTTTGTTTGTGGCGGT	69	-	chr3L	20954214	20954283	20954214..20954283	CG11037-RA,	FBgn0037038,	CG11037,	1	.
CG12217-RA	GCGGAGCGTGTGATACCCAAGCAGAACACAACGCCCTACTTCCTGTAAAACGTTCTGATGTGATGCGAT	69	-	chrX	6265740	6265809	6265740..6265809	CG12217-RA,	FBgn0003139,	PpV,	1	.
CG1227-RA	GGCCAACATCTGCCTGTCGGACTCTTTTGAGCCAATTATTGTGGATCTCGGGTCAATGACAGAAGCCCG	69	-	chr3R	3074507	3074576	3074507..3074576	CG1227-RA,	FBgn0037491,	CG1227,	1	.
CG14122-RA	TCGCTTCGAGTGCGAGTATATGGACTTGATGATCGGTTCTGGCATGTCCATCCTGTGCTTCATCGCG	67	-	chr3L	12393734	12393801	12393734..12393801	CG14122-RA,	FBgn0036282,	Smyd4,	1	.
CG31698-RA	CCATCCGTTCATTGGCCTGAACAAGTGCAATGGTAATGGCTATAAGGAGCCCAAACTTCCACCTCGGGA	69	-	chr2L	3173673	3173742	3173673..3173742	CG31698-RA,	FBgn0051698,	CG31698,	1	.
CG8210-RA	TTGCTTTACACCCTGTAAACAACTATCCATAGATTCAGTGCTTCGCCTTTGTTCTTATCGTGTATTTAA	69	-	chr2R	11566989	11567058	11566989..11567058	CG8210-RA,	FBgn0262512,	Vha14-1,	1	.
CG2411-RA	ACGAAGCGAGGAACGATTGTAAACGCGGCATTTATCCATGTACATTTGTTGCACGAAGACTGACTGTCT	69	+	chr2R	4552617	4552686	4552617..4552686	CG2411-RA,	FBgn0003892,	ptc,	1	.
CG16874-RA	ATCACTTAGTTCATCATGCAGATCGTTGCTCTCACCCTCGTTGCGTTTGTGGCCATTGCCGGTGC	65	-	chr2L	11171584	11171649	11171584..11171649	CG16874-RA,	FBgn0014076,	Vm32E,	1	.
CG1394-RA	GCCACCCGTGGACCGTTCAATATATGGAGACATACCCGGACGAAATGAACCGTGCATCGACAATGGC	67	-	chrX	11064119	11064186	11064119..11064186	CG1394-RA,	FBgn0030277,	CG1394,	1	.
CG32392-RA	GGGATACTGATTCCGCACACATGTAACACTAACACACTCCTGCTATTAAATCAAGGTTGGCTGCAACTT	69	-	chr3L	6749921	6749990	6749921..6749990	CG32392-RA,CG32392-RB,	FBgn0052392,	CG32392,	1	.
CG5874-RA	AATTGCTGTCGAGTAAAAAGTGTGTAATTATCTTACCAAGCAGCATAAAATTTAGAGACGCTGATCGGC	69	+	chr3R	17055016	17055085	17055016..17055085	CG5874-RA,	FBgn0038872,	Nelf-A,	1	.
CG5866-RA	AGCGAAGGTTCCCCAGAAAGGATATCTGCCTGTCGAAGATGCTTCAGTGCATCAAATCGTTCCTAACGA	69	+	chr3R	13241556	13241625	13241556..13241625	CG5866-RB,	FBgn0038508,	CG5866,	1	.
CG7753-RA	GCAATGCCACTCTTAGTGTTCCCCGAAATTCATCCGGAAACGTGATCTCGGAATATCGACGAGTCAGCT	69	+	chr2R	15345620	15345689	15345620..15345689	CG7753-RA,	FBgn0002716,	mei-W68,	1	.
CG8757-RA	AGGAGTTCCAGAGGCACAAAACTGCCGTGAGGGTTTCGACAGTCAGTCCCGGCATAGTTGATACG	65	-	chr3L	13834603	13834760	13834603..13834630,13834722..13834760	CG8757-RB,	FBgn0036380,	CG8757,	1	.
CG15632-RA	GCGACGTTAGCGTGCTGGACCTGAAGTTCATCCTCAAGCGGGAGTTCAACATGGAGTTCCCAATTGAAT	69	-	chr2L	4700993	4701062	4700993..4701062	CG15632-RA,	FBgn0031623,	Taf12L,	1	.
CG17531-RA	TCGTAAAGGTGGACACGACCAAATATCCTCGGATAGCTGCATGGTTCAAGAGACTCCAAAAGCTGCCCT	69	+	chr2R	14294979	14295048	14294979..14295048	CG17531-RA,	FBgn0063493,	GstE7,	1	.
CG6835-RC	AGGATGTGTCGTACAACATTTGCGACCAGCGGTTCCACGAGTTCTACATTCGCGAGACATATCCGCACA	69	.	.	.	.	.	CG6835-RE,CG6835-RF,CG6835-RH,CG6835-RI,CG6835-RJ,CG32495-RB,CG32495-RD,CG32495-RF,CG32495-RG,CG32495-RH,	FBgn0030882,FBgn0052495,	GS,CG32495,	2	.
CG1387-RA	AAGCCGGAATCTAATGGAATGGTTCTGAAAACGAAGGGATTAAATCGATCACAGATGAAGAAGACAGCA	69	+	chrX	8282820	8282889	8282820..8282889	CG1387-RA,	FBgn0030033,	CG1387,	1	.
CG4545-RA	TGGGTCATCGATGGTGTTAGCAATGGAACCCTTAGCCTTAGTTCGTAAGCGTTAACTAGCTCAGCTGTA	69	-	chr2R	20292309	20292378	20292309..20292378	CG4545-RA,	FBgn0010414,	SerT,	1	.
CG15877-RA	AGCTCGTCCGGAGAACGCTTATGCAGTGGTTACAGTGCGCCAAAAGAAGAAACAGAAGCACCAGC	65	-	chr3L	2376902	2376967	2376902..2376967	CG15877-RA,	FBgn0035337,	CG15877,	1	.
CG31211-RB	TCAGCAGTCAAATGGTATAGGTGATGCACATAAATCCAAAGAACTCCTAAGCATACATTGCCATCATTT	69	+	chr3R	7778763	7778832	7778763..7778832	CG31211-RB,CG31211-RC,	FBgn0051211,	CG31211,	1	.
CG6269-RA	CGTTCCTGAGAAAACCGAAATGCCCGAACTGTGAGCGAGAAATAGAGGTCTCCATGGTGCTGGCGATGA	69	+	chrX	17674625	17674694	17674625..17674694	CG6269-RA,	FBgn0024184,	unc-4,	1	.
CG13939-RA	TCGGCGAACTCCAAGTATCCCAGCTATGCTCATCTGTGCTATCCTGATTGCATTTATCGCGAGACGGGT	69	-	chr2R	10262472	10262600	10262472..10262505,10262564..10262600	CG13939-RA,	FBgn0033931,	Obp50e,	1	.
CG8478-RA	CTGGAACGTGCCTTGCACATCCATTTAATGCAGAACTGCGACAAGATACCGCCGTCCGAGAAGCG	65	+	chr3R	5591070	5591135	5591070..5591135	CG8478-RB,CG8478-RC,CG8478-RD,	FBgn0037746,	CG8478,	1	.
CG8310-RA	AGCACGTGATCATCCCCCGCATCAACCGCACCATAGAGTATATCATCAGCGAGCTGGACGAATTGG	66	-	chrX	2473488	2473615	2473488..2473548,2473609..2473615				0	no match
CG1708-RA	GCTACTTAAGATACTCGCAAGACAAACCGTACACAAAACTCGCTCAAAGTGTTGACCTAAGTCTCCGCA	69	-	chr2R	3270171	3270240	3270171..3270240	CG1708-RA,	FBgn0000352,	cos,	1	.
CG7143-RA	AGTGCCCCGAGTGTAAGGCTTTCATCAAGTGTGTAGACATGCCGGAACACTTAGACTACCACGTAGCCA	69	-	chr3L	21932278	21932347	21932278..21932347	CG7143-RA,	FBgn0037141,	DNApol-eta,	1	.
CG10302-RA	CCGGACAGCAAGGCCTAGAGGTTTCTGCAAAAGGTCCTTGTTTAGTGTAGGCCGTCGTGATTAAAGCTT	69	-	chr2L	18449582	18449651	18449582..18449651	CG10302-RA,	FBgn0032679,	bsf,	1	.
CG10955-RA	AGTGGCCGAAATTGTGGGAGTGGTTGAGACGGGGAAGATCTACAGTCTGGGCACTACACGAACCAATC	68	+	chr2R	18264300	18264368	18264300..18264368	CG10955-RA,	FBgn0034722,	Rtf1,	1	.
CG3682-RA	TGGTGACGGAACACAAGACACACCAACCCAGATATATCACGATGTGGACTGAGAAAGAGTCCGAGCGAA	69	+	chr2R	18768018	18768087	18768018..18768087	CG3682-RA,CG3682-RE,CG3682-RF,CG3682-RG,CG3682-RH,	FBgn0034789,	PIP5K59B,	1	.
CG4472-RA	TATCGAAGGGATCTGGACTCAGTGGTGCTCCCATTGTTCATGAGACATGTGGAGTTGCACCCGGC	65	+	chr2L	16446303	16446368	16446303..16446368	CG4472-RA,	FBgn0020416,	Idgf1,	1	.
CG32486-RD	CTCCAAATGAAACCCTACCGCACAGACGAGTACGTGCACAAGCTCTTTTATGAGACGGCCCGCTT	65	-	chr3L	3057203	3057268	3057203..3057268	CG32486-RD,	FBgn0052486,	CG32486,	1	.
CG1071-RA	TGGCAGCGCAATTGACATTCGCCTGGTGACGAACCAAGGAAAGAGTACTACAAATCCGCACGATGTGG	68	-	chr2L	21154891	21154959	21154891..21154959	CG1071-RA,	FBgn0024371,	E2f2,	1	.
CG7796-RA	GCGCGGCGGTATAAATGGCGACTCAAAATTGGATAATAATCTCGACTCGAGCGACAGTCCAATGTTTGA	69	+	chr2R	1740496	1740565	1740496..1740565	CG34385-RC,	FBgn0085414,	dpr12,	1	.
CG4679-RA	CCGAAGTCTTCGCCCACATTGACAAGAACCAGCACAGAATTCCCGGAACACCAAGCCTAAATGCTCTGA	69	-	chr2R	9125006	9125075	9125006..9125075	CG4679-RA,	FBgn0033816,	CG4679,	1	.
CG4866-RA	GTGACGATTTCCAAATGTAGAGAGACTACCTCCCTTAAGATAACCAGTAGAGTAACTAAAGCTAACTTG	69	+	chr2R	13406434	13406503	13406434..13406503	CG4866-RA,CG4866-RB,	FBgn0034232,	CG4866,	1	.
CG32487-RA	CGCACTTCGTGCCATGGGAAAGAAGGCCTTTATTTGCACCAATAACTCAGTGACTTCGGTCGAGGGCAT	69	-	chr3L	3016976	3017045	3016976..3017045	CG32487-RA,	FBgn0052487,	CG32487,	1	.
CG9154-RA	AGATTTTGTGCACTACGACTTGAACTGCGTAGGGAGCAACCCGGACTACCTCAAAGAGCACCACCAG	67	-	chr2L	6070068	6070135	6070068..6070135	CG9154-RA,	FBgn0031777,	CG9154,	1	.
CG8756-RC	CGATGTTTTGCGCCAACTTTGCGATTGGAAGTCGAATGTGAAGTCCTGCGATGTGCTCGAGAAGCCG	67	.	.	.	.	.	CG8756-RC,CG8756-RE,	FBgn0261341,	verm,	1	.
CG1512-RA	GCCGTAGTGCCGAGTATGTGGCGAAATACTGTGATACGCTACTGAAAAAGTCTAAGACCTGCGAGGCAG	69	+	chr2L	21660973	21661042	21660973..21661042	CG1512-RA,CG1512-RB,	FBgn0032956,	Cul-2,	1	.
CG1773-RA	ATGTGAATTATTAATGTGTACGATCTAGTAGTCCATGATTTTGTGTCGTTCATTTGTATAGCAAGTAAT	69	+	chr2R	5594987	5595056	5594987..5595056	CG1773-RA,CG1773-RB,	FBgn0033439,	CG1773,	1	.
CG8110-RB	CTCACCGCAACAAGATCTTCATCGTGGACCCCGTATCGCTCAACATTGTGCATTCGCTGGACGCG	65	-	chr3L	7921636	7921701	7921636..7921701	CG8110-RB,CG8110-RA,CG8110-RC,CG8110-RD,	FBgn0024187,	syd,	1	.
CG2574-RA	ATGAGTGAGTGCAATCCAGATGATCCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGG	69	+	chrX	12303566	12303635	12303566..12303635	CG2574-RA,	FBgn0030386,	CG2574,	1	.
CG15618-RA	ACCACCATTCTTGGACACCATGATCGGTAAGCTGACCTTCGATGACTTCAACATGGTACAGCGCCTGGT	69	-	chrX	19753998	19754067	19753998..19754067	CG15618-RC,CG15618-RB,	FBgn0031077,	CG15618,	1	.
CG4600-RA	TGGCCCAGTACCCGCCATTCAGAACGTCCTGAAGGTTTCCGGCAAGAAACTGGAGGATATTGATCTGAT	69	+	chr2L	9916752	9916821	9916752..9916821	CG4600-RA,	FBgn0040064,	yip2,	1	.
CG9057-RA	CTCCCGACAGATCAAGCAGGTCCAGAAGGGCAACATCAACGACTATCTGAGCTCCCTGATAGCCG	65	-	chrX	14966522	14966587	14966522..14966587	CG9057-RB,CG9057-RC,CG9057-RA,	FBgn0030608,	Lsd-2,	1	.
CG8939-RA	GAGGAGGTTGTCCAGGGTAAGAAGGCCAAACGTCGTGCACGCCATGAGACCGCAACTAAAGACAG	65	+	chrX	15892884	15892949	15892884..15892949	CG8939-RA,	FBgn0030720,	CG8939,	1	.
CG4912-RB	TCGCAGCCACTACAGCCCATTAGTAAGCGAAATCGCAAAGGCTAGGGAACACATACAGAACTCGCTGGA	69	+	chr2L	10233488	10233557	10233488..10233557	CG4912-RB,	FBgn0032198,	eEF1delta,	1	.
CG10001-RA	GATGCAAAGAAGAACATCACCTACGGCATGTGCACCTTCACGACGAACGACTTCCTTGGTCCGCG	65	-	chr3R	24566632	24566697	24566632..24566697	CG10001-RA,CG10001-RB,	FBgn0039595,	AR-2,	1	.
CG8365-RA	AATCGGTGATGACTCACCTGGGACGCGTCTACAAGAACTTGCAGCAATTCCACGAAGCACAGTCC	65	+	chr3R	21866373	21866438	21866373..21866438	CG8365-RA,	FBgn0000591,	E(spl),	1	.
CG4370-RB	CTTCCTGCTTCCTGTTCTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCG	65	-	chr3R	19340771	19340836	19340771..19340836	CG4370-RA,CG4370-RB,CG4370-RC,	FBgn0039081,	Irk2,	1	.
CG33101-RA	TGGCCCAGTTGAGTGATTTCCCATTCGTTAAGGTCTGCTCCCCGGAAGATATGGTAGGATTTACGGAGT	69	-	chr3R	9660910	9660979	9660910..9660979	CG33101-RA,	FBgn0013998,	Nsf2,	1	.
CG9018-RA	TGAAGGAAACGAAGGAGTCACTTTAAGATTACATATATATTTGCAATTGTCCCCCTAATCGCACC	65	-	chr3L	2235363	2235428	2235363..2235428	CG9018-RA,	FBgn0035318,	CG9018,	1	.
CG10943-RA	AAAGTCTCAGATAGGCGACAATGATGTAAAGCTAAAGGACAAACAAGATCTTATAGCAACACTCGAAGC	69	-	chr3L	12855342	12855411	12855342..12855411	CG10943-RA,	FBgn0036320,	CG10943,	1	.
CG31117-RA	ACTGTTGTGTTACAACGAATTCGAAGGACCTTTGTAGTTTTGGACACTCGAATCCTAAAGAATTCGAAG	69	-	chr3R	20493494	20493563	20493494..20493563				0	no match
CG8322-RB	GAACGAGAGGCTGATGATTGAGTTCATTGAGGGGGATTTTCGGCGGCCTACCACTGAGGTTTTGGTGAC	69	-	chr2R	11880420	11880489	11880420..11880489	CG8322-RE,	FBgn0020236,	ATPCL,	1	.
CG4951-RA	AGCCGCGCGAGGTTAAGATTTTGTAAGTGACTCGACTAGATGCAAATAAAGCGAACACGAATGTGCCTT	69	-	chr3R	23778431	23778500	23778431..23778500	CG4951-RA,	FBgn0039563,	CG4951,	1	.
CG5778-RA	GCTACGATGATGGCGGTCTTACGCAGATTATAAGCGGCTGAGATTATAATCTCGAAGCTTTGCTAGCGC	69	-	chr3R	17911296	17911365	17911296..17911365	CG5778-RA,CG5778-RB,	FBgn0038930,	CG5778,	1	.
CG15092-RA	GTACGAGAGTTTAAAAGAAGGCCTATAGAATTGCACAAAATAGCGTGAGAAAGGCAATCGAAAAGACCG	69	-	chr2R	14648369	14648438	14648369..14648438	CG42351-RB,CG34020-RA,CG42351-RD,CG42351-RG,	FBgn0259682,	CG42351,	1	.
CG32158-RF	GTCGCAGCTTTCTCATTATCCTTCTGGTCAGCATGGCACTGTACACCTTCCAGCGTGACGAGGGG	65	-	chr3L	16485908	16485973	16485908..16485973	CG42514-RA,CG42514-RB,CG42514-RC,CG42513-RB,	FBgn0260388,FBgn0263131,	CG42514,CG43373,	2	.
CG11049-RA	AGTGGCATGGTAATTCGGCTACCGTAGAAGCCTTGTGCGTACACAATGCGTGGTTTTCTTGGCCTTTGT	69	+	chr4	1133071	1133140	1133071..1133140	CG11049-RA,CG11049-RC,CG11049-RD,CG11049-RE,CG11049-RH,CG11049-RI,	FBgn0005561,	sv,	1	.
CG17626-RB	TGCAGGACCTTTGACGTATACAAGTATGATGCACCATGAGGAATGTAAGGTCGCTGAACCTTGGTCTCA	69	+	chrU	252398	252467	252398..252467				0	no match
CG17246-RA	TCGTGGGTGTGCAATGACAACGGAGACATTACGCTGGACTACAGAAACGTGATCGATACCACGCTGGAC	69	-	chr2R	15279945	15280014	15279945..15280014	CG17246-RB,CG17246-RC,CG17246-RA,	FBgn0261439,	SdhA,	1	.
CG41074-RA	GAGAGTTTCATTAGCGAGCGCCTGGCGAAAGAACTGGACAGCGGGAAGAGCCTCAGATCAAACTG	65	.	.	.	.	.				0	no match
CG33060-RA	GGTCGGAAGAATTTCAGGCCAAAGAATGTCCCCGAACGAAAAGCTTCAAGCCACCAGAAGAGAGGCGAA	69	+	chr3L	16324646	16324715	16324646..16324715	CG33060-RB,	FBgn0053060,	CG33060,	1	.
CG8237-RA	GCTGACCAAGTTCATCGTTTGCTGCTACGAAGCGCTGTGGACATACCTATACCAAGGGGCTACGC	65	+	chr2R	4813847	4813912	4813847..4813912	CG8237-RA,	FBgn0033350,	CG8237,	1	.
CG1703-RA	GGCATTGGGTTCCTTTGGTTTGGTCAGTCATGCACACACCATCAAGATGAAGGATCTGTCCGGTGGTCA	69	+	chrX	11508600	11508669	11508600..11508669	CG1703-RA,	FBgn0030321,	CG1703,	1	.
CG6214-RO	GCTGTCGCATCTCAAGTCCTTTGTAAAGAGTTTGGCAGCTGGTCTGAATCACGAGATTGCCGAGGGTGG	69	+	chr2L	12738992	12739061	12738992..12739061	CG6214-RB,CG6214-RA,CG6214-RL,CG6214-RJ,CG6214-RI,CG6214-RH,CG6214-RF,CG6214-RG,CG6214-RE,CG6214-RD,CG6214-RC,CG6214-RP,CG6214-RQ,CG6214-RK,CG6214-RO,CG6214-RN,CG6214-RM,	FBgn0032456,	MRP,	1	.
CG7850-RA	AGGAGGCACCGGATAGCAGGATTAACCATGTGGCTAGCAATTTGACGAGGGACTGAGATAAGGTGCCTG	69	+	chr3R	3947001	3947070	3947001..3947070	CG7850-RA,	FBgn0243512,	puc,	1	.
CG12317-RA	ATTTGAAACCGTTTTAAGTGCCGTTTGTATGATATTTTAGCATTGCTCATCACCAAAATTGGCGTCGAT	69	-	chr2L	12052057	12052126	12052057..12052126	CG12317-RA,CG12317-RB,CG12317-RC,	FBgn0028425,	JhI-21,	1	.
CG1231-RA	CACCTTGCACCGGGAGAGACCCCCAAAATTCGTGTGGATAGTGCCTGTATCGAATCTCATCCAGACG	67	+	chr3L	356460	356527	356460..356527	CG1231-RA,	FBgn0035134,	CG1231,	1	.
CG8374-RA	CCTGGGCGAATCACATTCGAAGCAAACCGACATCAGATATATGTTGTGCTCCACTATGATTGCGCCGCC	69	+	chr3R	5539134	5539203	5539134..5539203	CG8374-RA,	FBgn0016792,	dmt,	1	.
CG32445-RA	CCGCTTTGGCTCTTGTCCCAAGCGAGTGTAGCAACTTAGTTGATGCTCCCAAAATTAGGCCGCTAAAAT	69	+	chr3L	21633648	21633717	21633648..21633717	CG32445-RA,	FBgn0052445,	CG32445,	1	.
CG3181-RA	CGACAATGGGGAGTCACCAAGTAAACAGCAGGCCCCTGTCAATCGGGATGAGATGCACTACTTGGATCT	69	-	chr2L	2969445	2969514	2969445..2969514	CG3181-RA,	FBgn0024920,	Ts,	1	.
CG10339-RA	GAAGGTGATTGTGGTGACCTTCTCGTATCGGCTGAACATCTTCGGGTTCTTCACCACCGACGACG	65	-	chr2R	19967085	19967150	19967085..19967150	CG10339-RA,	FBgn0034972,	CG10339,	1	.
CG4631-RA	GCCGCGGGTAAGACCCTGTACTGAGAACCAAAACAGATTCTCCGGTGGTTTCATGATGCCCGAACCATA	69	+	chr2L	16608445	16608514	16608445..16608514	CG4631-RA,	FBgn0032590,	CG4631,	1	.
CG1121-RA	TCGAGCCCTATTTGACTCCTCATTGTGTGATTCCCAAGTCGCCACTGGAAATGATGCGGGACTGTTGG	68	-	chr3R	3336477	3336545	3336477..3336545	CG1121-RA,	FBgn0015576,	alpha-Est8,	1	.
CG12262-RA	GGGTCAAGCCTAAGTCAGTTTTAACTAGGATTCCTCATCTCCATTCACCTCATCAGTTGTCATGCTCAT	69	+	chr3L	7714448	7714517	7714448..7714517	CG12262-RA,	FBgn0035811,	CG12262,	1	.
CG7882-RA	GCCTCGCATTCTACGGTCTTCTCGTGCTTGTGTGTTATGCACCTTTTAGGTGGTATCCTGAGAGCCCCA	69	+	chr2R	1846140	1846209	1846140..1846209	CG7882-RA,	FBgn0033047,	CG7882,	1	.
CG2257-RA	CGCCAGCCTACGGAACTACCGCTAACACTAACACTGACAACAGCCTAATACAAATGCTTCGAGAATCCA	69	-	chrX	7983260	7983329	7983260..7983329	CG2257-RA,CG2257-RC,CG2257-RB,	FBgn0029996,	Ubc-E2H,	1	.
CG8364-RA	GGTCGACGATGAGGAGTACTTCAGCACTCTGGAGCCAAATGCCGAATTGATTGCCGTCTTTCCTGG	66	+	chr2R	7949140	7949206	7949140..7949206	CG8364-RB,CG8364-RA,	FBgn0028407,	Drep-3,	1	.
CG12224-RA	CGGATTTGGTGTTACCAATCCTGCAATTGCATCACGGTCACGAACTAGGCCTCAACCTAGCCAGACTGG	69	-	chr3R	7806639	7806708	7806639..7806708				0	no match
CG1555-RA	TGCCGGGCTTCAACTACTCCCAGGAGTACATAGAAACGGGGTATCTGGAGCTCTGCATACCCTCGAAAT	69	-	chr2R	3671451	3671520	3671451..3671520	CG1555-RA,	FBgn0000337,	cn,	1	.
CG7839-RA	TGACGACTGGGGTGATGACGACTTGGCAGAAGATGAAGATGATGAAATTGAGGGCGAAGATCAGTCCGA	69	+	chr3L	11071109	11071178	11071109..11071178	CG7839-RA,	FBgn0036124,	CG7839,	1	.
CG18335-RA	CATCGGGATCTACTGGAGAGTGGGAACGGACTCTTCGACCGCAAGATCAACGAAAGACTGCTGCC	65	-	chr2R	7177913	7177978	7177913..7177978	CG18335-RA,	FBgn0033610,	CG18335,	1	.
CG17137-RA	GCTAATCGAGGCTGTTGAAAAGTAGACAAAAAATTTCGAAATTAGTCGGGCCATATATACCATACCACC	69	-	chr2L	10846915	10846984	10846915..10846984	CG17137-RA,	FBgn0069354,	Porin2,	1	.
CG3173-RA	TGCTCCAAGCCTACATCAACTACAATCCCTCAAGTGCTCTGCTCTTCATCGAACAGTACGTGGGCATCC	69	+	chr2R	19931046	19931115	19931046..19931115	CG3173-RA,	FBgn0034964,	CG3173,	1	.
CG3779-RA	ACTGGGGAAGATCCCTTAGTCACTCAACAATTGACCAAGCTACCAAGTTACCCACGAAAGTCCACCATA	69	+	chr2L	9462744	9462813	9462744..9462813	CG3779-RA,CG3779-RB,	FBgn0002973,	numb,	1	.
CG3733-RA	GGCAAGCAGATCGATGTTTGCCTCAATCCCTACGCCGAGACAGAGAAAAAGGAATGGCGCAGTAACCTT	69	-	chr2L	2981261	2981330	2981261..2981330	CG3733-RA,CG3733-RB,	FBgn0250786,	Chd1,	1	.
CG13893-RA	CCCCTGGGAACCGTGTACTCCAACGAGATGGACGAGATTGGTTACATCTCTACACGACCGAACACCACT	69	-	chr3L	599688	599757	599688..599757	CG13893-RA,	FBgn0035146,	CG13893,	1	.
CG14770-RA	CTCTGAAGATCCACGACTACCACCAGGGGCACGAGGAGTACGAGCACCACGACCATCATGAGCAC	65	+	chrX	1263679	1263744	1263679..1263744	CG14770-RA,	FBgn0029573,	CG14770,	1	.
CG2675-RA	CGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGTTTGTCTGGTACCTGGTCCTGCT	69	-	chrX	2596138	2596207	2596138..2596207	CG2675-RA,CG2675-RB,	FBgn0024994,	Csat,	1	.
CG8890-RA	CTAAATACCCGGCTAATTGCTATGTCGACTTCCGATGGGGCCCCGGAAACCAAGAAGCAACGTCC	65	-	chr2L	4976861	4976926	4976861..4976926	CG8890-RA,	FBgn0031661,	Gmd,	1	.
CG18128-RA	CCATGGCCAAGTACATCGTGAACGTTAGCCACATCAGGCCAAAGTACGGACTAATCTGCGGCAGC	65	-	chr2R	19607149	19607214	19607149..19607214	CG18128-RA,	FBgn0034898,	CG18128,	1	.
CG10317-RA	CCATGTCAGAGGAAAACCAGAGGACGGATCTTGAGGGCGGTAGTAGCCTTTGCAACATGTCCATGTCGG	69	-	chr3R	12195743	12195812	12195743..12195812	CG10317-RC,CG10317-RD,	FBgn0038423,	CG10317,	1	.
CG15145-RA	GTTCCGAGTACGCCCAAAAACTTGCCAGGGATGTGCAGAAAAACGACCTGAAAAGCATGATTTTGGCCT	69	-	chr2L	17530575	17530644	17530575..17530644	CG15145-RA,	FBgn0032649,	CG15145,	1	.
CG13387-RA	TGCCATCATTCTGGCGTACATGTTCTCACTGGTGGAGAACAGGAAGATTACGGTGAACCTGGGTCCGAT	69	+	chr2L	8407450	8407519	8407450..8407519	CG13387-RA,	FBgn0020497,	emb,	1	.
CG7714-RA	GGCTGCCACCAAATAAGTCCTCGAGTTGATTCTATCCAAAACCCCAGATTTTGTGGCTGAATAAAGTGT	69	-	chr3R	14551260	14551329	14551260..14551329	CG7714-RA,	FBgn0038645,	CG7714,	1	.
CG16901-RB	TGTTTTTCTAATGTAGTCCCATACATTATGCGAGGTAATTGTTTAACGCGTCAGTAGAGCACAGGATGT	69	-	chr3R	9461432	9461501	9461432..9461501	CG16901-RB,CG16901-RC,	FBgn0086897,	sqd,	1	.
CG4152-RA	CACCCAGATCAGCTCAATCCGCGTGTACTTCCCCAACGATCTACGCAGTGCTGACAATCGGCGAG	65	+	chr2L	15754655	15754720	15754655..15754720	CG4152-RA,	FBgn0001986,	l(2)35Df,	1	.
CG15227-RA	GCGCTCAGCTGAATAACAACTTCGAATACCTCACCCTGTCCTATCTCTTTGCACTGAGTCACGTCAAGA	69	+	chr2R	16754098	16754167	16754098..16754167	CG15227-RA,	FBgn0034554,	CG15227,	1	.
CG16991-RA	ACACTTGAGTCGCAAATCCAATGTCCAGAATCCTGTCCAACAACGGCATGCATATGGATGAGCCAATAA	69	+	chr3L	7461595	7461664	7461595..7461664	CG42660-RA,CG42661-RA,CG16991-RA,CG16991-RD,CG16991-RC,	FBgn0261536,FBgn0261537,FBgn0035786,	CG42660,CG42661,Tsp66A,	3	.
CG17136-RB	TACTTGGCTCAATGTGTCTCCCAAATGGAACAATGGATCACTTGACTCCAAAAATTGGGTACTTT	65	+	chr3R	6610680	6610745	6610680..6610745				0	no match
CG8444-RA	GCGACTACCCGGTGATCTTCAACATCATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTG	65	+	chr3R	5087739	5087804	5087739..5087804	CG8444-RA,	FBgn0037671,	VhaM8.9,	1	.
CG4184-RA	TTGCCCGCATCTCGAAGTTGCCCAAGAACTACTCGCTCTCACATTTGTTGGACACCTGGGAGATG	65	+	chr2L	475662	475727	475662..475727	CG4184-RA,	FBgn0027592,	MED15,	1	.
CG3796-RA	TCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGCACACTGAAAATGGCAGTAGAGTACATACGGCGCTT	69	+	chrX	264326	264395	264326..264395	CG3796-RA,	FBgn0000022,	ac,	1	.
CG31262-RA	AGGCACTTCCTTTGGAGTATTCACATTAGGAATGTTGTTTCCATGGGCAAACACTATAGGCACAGCGGT	69	-	chr3R	13043391	13043460	13043391..13043460	CG31262-RE,CG31262-RF,CG31262-RB,CG31262-RD,	FBgn0051262,	CG31262,	1	.
CG12911-RA	ACGTGTGCCAGGTGCTAAAATTGTGATCGATTCGGTGGAGCCATTTGAAGAGGGAACACCATGAGTGCT	69	+	chr2R	6144301	6144370	6144301..6144370	CG12911-RA,CG12911-RB,	FBgn0033501,	CG12911,	1	.
CG5835-RA	ACGGTGGGCTTCAATTGGACCTGGTTTCGGTTTAAAGTGCACACTCACCACACAATTCAGACGAGACGA	69	-	chr3R	14974649	14974718	14974649..14974718	CG5835-RA,	FBgn0038682,	CG5835,	1	.
CG2718-RC	AGAAGGAAATATCACTGAAATCGGACGATATGCATATTAATCATTCATATCCATGAGCACGAATACACA	69	+	chr2L	134132	134201	134132..134201	CG2718-RC,CG2718-RB,	FBgn0001142,	Gs1,	1	.
CG10170-RA	CGGGGGTCTGCTAAGTGTAATGGAGGCTGTTTACAGTGGAGTGCCGATCTTGGGATTGCCTGTGTTCTT	69	-	chr3R	19359211	19359280	19359211..19359280	CG10170-RA,	FBgn0039085,	CG10170,	1	.
CG18369-RA	GTGGCGCTACTTCAAGCAGCTGGTAACCCCGAATCTCACCTTCGACATCAGCAATAGGGGCATTG	65	+	chr2R	9485708	9485773	9485708..9485773	CG18369-RA,	FBgn0033860,	S-Lap5,	1	.
CG3304-RB	CGTCTGTATGTGTCACAGAACTACGTCTGCTTCCACGCGAACATCTTCAGTTGGGAGACCCACGTGAGC	69	-	chr2L	3364830	3364899	3364830..3364899	CG34394-RD,CG34394-RA,CG34394-RC,CG34394-RE,CG34394-RF,CG34394-RG,	FBgn0085423,	CG34394,	1	.
CG9836-RA	TCGTCTGTCATTGATACTAAAGGATAGCTGGAACTGATCTTGTATGAATGCATATGCACGTGTGTG	66	-	chr3R	4648683	4648749	4648683..4648749	CG9836-RA,	FBgn0037637,	CG9836,	1	.
CG2530-RA	TGAAACAAAATTCTGTCTAGCTGCTATGAGAAATTGTTGTCCGACGGTGAGAAAAGAGGAAATGAGCGA	69	-	chr3R	909816	909885	909816..909885	CG2530-RA,CG2530-RB,CG2530-RC,CG2530-RD,	FBgn0010313,	corto,	1	.
CG13643-RA	GCATGCCACCTTCAACACGGACTTCCTGGATAGCTCTTCGCATACCAAGAGTCCATCTTACAGCGCG	67	-	chr3R	20725210	20725277	20725210..20725277	CG13643-RB,	FBgn0040601,	CG13643,	1	.
CG32434-RA	GGCAACCTTCTATGCCCATACCCGTTTTGATCTACCCCTCCCCTTACGAATTACAAAAGCGATTGGCGA	69	+	chr3L	21068154	21068223	21068154..21068223	CG32434-RC,CG32434-RB,CG32434-RA,CG32434-RD,	FBgn0026179,	siz,	1	.
CG12901-RA	AATTTCTCCTCTAGTTAGTCCAAAACGTACTAGTAGACATGAGCAAAACTCCAACGTCGACGATGCAAT	69	-	chr2R	6243826	6243895	6243826..6243895	CG42733-RC,	FBgn0261686,	CG42733,	1	.
CG6325-RA	GGGCGGTGTAATGCCAGAGAAGCCTGTGTGCACAAAGAAGCTAAGAAGACGCTATGTAGAGGAGGACGA	69	-	chr3R	6230136	6230205	6230136..6230205	CG6325-RA,	FBgn0037814,	CG6325,	1	.
CG6733-RA	GGCATGGCGGAGTTTGTTAAGACGGATTACTACAAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGC	69	+	chr3R	18923996	18924065	18923996..18924065	CG6733-RA,	FBgn0039052,	CG6733,	1	.
CG16944-RA	GGGTCGTCCCACATCTCCCCAGCCAAATCAGTGTTATCGATCGGATGCAAAGAATCGAACCGAAGACCT	69	-	chrX	10675110	10675179	10675110..10675179	CG16944-RA,CG16944-RC,CG16944-RB,CG16944-RD,	FBgn0003360,	sesB,	1	.
CG4090-RA	GAACCTGGTACGACGGAGAGTACAACCAGCTCTGGAAAACCTGAAACCACCTCAAAGGCCCCTGA	65	-	chr3R	12980104	12980169	12980104..12980169	CG4090-RA,	FBgn0038492,	Mur89F,	1	.
CG32439-RA	CCGGAATACATGACCTCAGCCTCCATATTCCGGGATCATGCTCCACAGACATCGCAATCGCAGTC	65	+	chr3L	21321024	21321089	21321024..21321089	CG34410-RC,CG34410-RD,	FBgn0086913,	Rab26,	1	.
CG14040-RA	GGCCTTTGTCAACTTGGCCACATTCGATCCCACCACCTACTATCTGCTACTGCAGCTACGTGTCGTTGT	69	+	chr2L	5053513	5053582	5053513..5053582	CG14040-RA,	FBgn0031676,	CG14040,	1	.
CG13068-RA	CGCTGCCTACTCTGCTTATCCGTATGCCGCCTACCCTTACAGCGCTGCATACACCACTGTTTTGTAA	67	+	chr3L	16262867	16262934	16262867..16262934	CG13068-RA,	FBgn0036588,	CG13068,	1	.
CG12176-RA	TCACCCGAAAATCGTTGCACTTTCCGCGCACTGAGATGAAACGGGATGATAAGACCTGGAGCGAGTGTA	69	-	chrX	13559772	13559841	13559772..13559841	CG12176-RA,	FBgn0030506,	Lig4,	1	.
CG2368-RB	ATGACCCACAGACAAAAAATTCCCAAGGGTAGGATAAAGCAATCACAAAACCACTTTTCAACTAGATGG	69	+	chr2R	6502763	6502832	6502763..6502832	CG2368-RA,CG2368-RE,CG2368-RH,CG2368-RD,CG2368-RI,CG2368-RG,CG2368-RL,CG2368-RC,CG2368-RJ,CG2368-RF,CG2368-RB,CG2368-RK,	FBgn0263102,	psq,	1	.
CG8149-RA	CCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTCTCCAGAAACGGAAGGAGCGATTTGGAGC	65	+	chr3R	5331247	5331312	5331247..5331312	CG8149-RA,	FBgn0037700,	CG8149,	1	.
CG11836-RB	CCCACGGGTGTTAATCAATATCCTTGGATGGCACGAATCGTGTACGACGGCAAGTTCCATTGCGGAGG	68	+	chr3R	20897504	20897572	20897504..20897572	CG11836-RB,CG11836-RA,CG11836-RC,CG11836-RH,CG11836-RG,CG11836-RE,CG11836-RF,	FBgn0039272,	CG11836,	1	.
CG10253-RA	GTTCGGGTCTCCAGTTCTTTTGTAGCGGGCTCATGTTTTCTATGGGTTTTGATAAATAAATGGAGTAT	68	-	chr2R	10817595	10817663	10817595..10817663	CG10253-RA,CG10253-RD,CG10253-RB,CG10253-RC,	FBgn0033983,	CG10253,	1	.
CG7646-RA	AGGCAATTTATGACATGCTAGGAGCGTGCTCATCTAATCGTCCAGCTGATTCAGCAGAAGAAAGAGCAA	69	+	chr3L	19988726	19988795	19988726..19988795	CG7646-RA,CG7646-RB,	FBgn0036926,	CG7646,	1	.
CG10225-RA	TTTTTATACGATTCATACATGGAGAAATAAAACACTCACAACAAACACTAATTAATAAAGCGCGCCGTG	69	-	chr3R	19576875	19576944	19576875..19576944	CG10225-RA,	FBgn0039110,	RanBP3,	1	.
CG13225-RA	GGGCGGATCCCTTAAAGAATCACAGGCCACATTGAACAAAGTCTTTGCCCTGTACCAGACCAGCTTGGA	69	+	chr2R	7138663	7138732	7138663..7138732	CG13225-RA,	FBgn0026386,	Or47a,	1	.
CG8268-RA	TGCCGTCGAGAACATGTACTTGGCCAATCCACAGAACTGTCGACTTACCATGAAATACGCGCACTCCAA	69	+	chr3L	7929609	7929678	7929609..7929678	CG8268-RA,	FBgn0035827,	Srp9,	1	.
CG12056-RA	AGGGCCGGGATTTGTAAATAGTAATTAGTGCATTTGGATCAATAAATTATTAGGTGGAGTTAACATGG	68	+	chrX	9087592	9087660	9087592..9087660	CG12056-RA,	FBgn0030099,	CG12056,	1	.
CG7236-RA	GCGAGAAATTAGGCTACTGAAGAACCTGAAGCATCCGAACCTTGTCTCCCTGCTAGAAGTGTTCCGACG	69	+	chr2L	5712402	5712528	5712402..5712424,5712481..5712528	CG7236-RA,CG7236-RB,	FBgn0031730,	CG7236,	1	.
CG32401-RA	CGCAGACATTACCCTTTCACGTCTCTTGGCCCTTTCAACTTCACGATCCATCGAAACATCCGATTGCCT	69	+	chr3L	6314375	6314444	6314375..6314444	CG32401-RA,	FBgn0041625,	Or65a,	1	.
CG14624-RA	CACCTCGACATCCTGGTCAGCCTGATCAGCCTAATCAGCTGTTTTGCATTGATGAACGCCCAGCA	65	+	chrX	1100816	1100881	1100816..1100881	CG14624-RA,	FBgn0040357,	CG14624,	1	.
CG9646-RA	TGGTTATCCTAAGTGAGAGCGACAGCAAGCTAATGATTAGTGTGCGTGGACGAGAAGAGCTGCCGGT	67	+	chr2R	12940265	12940332	12940265..12940332	CG9646-RA,	FBgn0034184,	CG9646,	1	.
CG12860-RA	CCCCCCCGGGATCGAAGACATTCTCATACGGATGGCGTCAGTGATAAGTGCGCGAAGAACAAAAAAGAT	69	-	chr2R	10553944	10554013	10553944..10554013	CG12860-RA,	FBgn0033954,	CG12860,	1	.
CG12851-RA	CGACGCACGATGATGGTGACTTCTTCTACCACGACAACGGTGATCAGCTTCAACGGCAGTGATCCTGAG	69	+	chr2R	20840222	20840291	20840222..20840291	CG12851-RB,	FBgn0035086,	CG12851,	1	.
CG2272-RA	GCCAGAGGAGTGGCTAGAAAATTGCAATGTGTAGCACAGAAGTGAGGACGAACTTTTGAGGATCAAACG	69	-	chrX	8065174	8065243	8065174..8065243	CG2272-RA,CG2272-RB,CG2272-RC,CG2272-RD,	FBgn0030018,	slpr,	1	.
CG8280-RA	CCCAAGGATAAGAGTGCACACTGGGAAAACACTTGCATTTATGCATCCACTCCTCATCCACTTCCCCGT	69	+	chr2R	7782752	7782821	7782752..7782821	CG8280-RA,CG8280-RB,	FBgn0000556,	Ef1alpha48D,	1	.
CG13964-RA	GCCGACCAGTCCACGCCTTAATCTGTACGAGCTTCCAATTGTGACCCAAAGGAGCAACAGTACGGAACT	69	+	chr2L	19946137	19946206	19946137..19946206	CG42589-RE,CG42589-RG,	FBgn0260966,	sick,	1	.
CG5004-RA	GGGTGCCAGCACAAAGATCTTTGACAGCATCATGGAGATCGAACGGAATCGCAAACTTCTGTTGGCCCA	69	+	chrX	17022876	17022945	17022876..17022945	CG5004-RB,CG5004-RC,CG5004-RA,	FBgn0260748,	CG5004,	1	.
CG4608-RA	TATCGTCGAAACCAGATGTACCACCGATCCACACAACAAAGCTAAAGTTCCTGATCTTTAAGCATAAGA	69	-	chr3R	15619917	15619986	15619917..15619986	CG4608-RA,	FBgn0014135,	bnl,	1	.
CG10158-RA	AACACTGCACCAGTGCATAGTCAAAGTGAAACACAAGCACCAAGTGTGACATTGGAGACGGCGCC	65	-	chr2L	6944178	6944243	6944178..6944243	CG10158-RA,	FBgn0031871,	CG10158,	1	.
CG5814-RA	CGTGGACATCGACGCTTATCTACTACACCGGCTATCAATTGGCGGACTTTGCTGAAATTGTGACCGCGC	69	-	chr3R	20694680	20694749	20694680..20694749	CG5814-RA,	FBgn0015625,	CycB3,	1	.
CG5788-RA	CCGGCGGCTGAACGAGAGTATTACATATCCGGAAGACAAAACCATCGATTTGCAGCTCACACAAGGGCA	69	-	chr2R	13676713	13676782	13676713..13676782	CG5788-RA,	FBgn0026316,	UbcD10,	1	.
CG15199-RA	TCTCACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGTGCTCCGACGAATACT	69	-	chrX	11034654	11034723	11034654..11034723	CG15199-RA,CG15199-RB,	FBgn0030270,	CG15199,	1	.
CG14740-RA	CTAACGTGTTTAGGGATGGCGAAGGTTCACGGGAGGTCAACTATGAGGAGGACTGGTCCGGCAAC	65	-	chr3R	7887731	7887796	7887731..7887796	CG14740-RA,	FBgn0037988,	CG14740,	1	.
CG6249-RA	AGCATTTTAACAATTGCCACATATTGGTCACACTGCATTGCACGTGTGTTTCCATTTGTTGATGCGGCT	69	-	chr2L	11123518	11123587	11123518..11123587	CG6249-RA,	FBgn0032346,	Csl4,	1	.
CG1098-RA	TTAACATGATGTGCAGCGTTAAAATCAAAGAGGATAGCAATGACATAACCATGACAATACTGCTGCGCA	69	+	chr3R	1571044	1571113	1571044..1571113	CG1098-RA,	FBgn0027497,	Madm,	1	.
CG7892-RB	GCGTTTGTCTGTTTGAAAGTCAAAGCATTCCACCACCGAAATTAACTAAAACAAAACAAAAACAATTAT	69	+	chr3L	8043237	8043306	8043237..8043306	CG7892-RA,CG7892-RB,CG7892-RE,CG7892-RC,CG7892-RF,CG7892-RG,	FBgn0011817,	nmo,	1	.
CG15695-RA	TCTGGACAACCGCTAGACCGCACAAAAAAGGACTCGCTACTGCAATCTTTCGGATCTCGGAGCCTTTGT	69	+	chr3R	16670366	16670435	16670366..16670435	CG15695-RA,	FBgn0038832,	CG15695,	1	.
CG7127-RA	TGGTCACCTTGGCTGAGCCTGAGTGCGAACATAGCTACATGGAGATGATACGTGAACTGAAGGCTAGCT	69	+	chr3L	8408372	8408441	8408372..8408441	CG7127-RA,	FBgn0035892,	exo70,	1	.
CG10254-RA	GCACCCAACTGGGCAATGAGAACTCTCGTGTCTACAACGAGATGGCCATCATAAAAATTGCCCAATCCA	69	-	chr3R	19515663	19515732	19515663..19515732	CG10254-RB,CG10254-RA,	FBgn0027512,	CG10254,	1	.
CG17030-RA	CTTTTCCACCCGCTAACACTTAAAGCACAACACAAAAACACAGGACACCATGGCCAAAAAGGAGGAGCC	69	-	chr3L	4980617	4980686	4980617..4980686	CG17030-RA,	FBgn0035584,	CG17030,	1	.
CG31772-RA	TGCTGGCTCCAGTCCTTGTGTACTGCCCGATACGGAACAGAGTCAGCACATTATCTATAAGGGACACTA	69	+	chr2L	3765222	3765291	3765222..3765291	CG31772-RA,	FBgn0051772,	CG31772,	1	.
CG5924-RA	ACGATGTGATGCACGTGATCATTGACAATCTGCAATTTATGATGGGCGTGTCCACATTTCGAGGCGACA	69	-	chr2L	9891700	9891769	9891700..9891769	CG5924-RA,	FBgn0032154,	CG5924,	1	.
CG15864-RA	GAGGAGTTGTCGACCAAGCAGAACTGCGCTGTTGTGGTCCAAAAACCAAGTCGACTCCACTGTCG	65	+	chr3R	4075108	4075173	4075108..4075173	CG15864-RB,	FBgn0040528,	CG15864,	1	.
CG16889-RA	TTGGAGTACTCCATTGGGGTTTATTAAAAACTCATTAGGCTGGTCAGGAAATTGATTAATGTCCGAAAA	69	-	chr2L	13808597	13808666	13808597..13808666	CG16889-RA,	FBgn0028658,	adat,	1	.
CG4881-RA	TCCACTGAGTCGCATCAAGGTGGAGAACAATCAAAACGAGTCCATGGGTGGCTTTAACGAGCAGGAGGA	69	+	chr2L	11373073	11373142	11373073..11373142	CG4881-RA,CG4881-RB,CG4881-RC,	FBgn0000287,	salr,	1	.
CG3835-RA	GCTCCTGGGCAAGAACTTCGTGCTCACTGAGGACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGAT	69	+	chrX	2037411	2037480	2037411..2037480	CG3835-RB,CG3835-RC,CG3835-RA,	FBgn0023507,	CG3835,	1	.
CG33126-RA	TTCTAAGCCAGAAGTAGAACGGATACCAAGTTCAGTGGATAGCGACCGTATCTCCCAGTATATTCCAGA	69	-	chr2L	1361657	1361726	1361657..1361726	CG33126-RA,	FBgn0053126,	NLaz,	1	.
CG11906-RA	GCTACCAGACGGACACCCTAGTGGCTCTAATGAAGCACGACTACATGGAGCACTGGAAGATGAGCTGGT	69	-	chr2R	15169671	15169740	15169671..15169740	CG11906-RA,	FBgn0034425,	CG11906,	1	.
CG11753-RA	GCCAAGCTCTGTCTGGACTTTAGTTGCACCTTCCACGTGCTGCATTTGCTGATCTGCTGGTGGTACAAC	69	+	chr3R	4479176	4479313	4479176..4479199,4479267..4479313	CG11753-RA,	FBgn0037603,	CG11753,	1	.
CG14946-RA	CTGGCGGATCGGATCAAGTCGGATGTTGGATGCATATCGGTGCTGGTTAATAATGTGGGCATAATGC	67	-	chr2L	12064188	12064255	12064188..12064255	CG14946-RD,CG14946-RC,	FBgn0032405,	CG14946,	1	.
CG11533-RA	GCCACTTGAGTCCGCAGAAGTTCCACAGGAAATCCCTTACCATCCACAGTCTGATACGACATATTCTGT	69	-	chr4	493852	493921	493852..493921	CG11533-RD,CG11533-RE,CG11533-RF,	FBgn0039908,	Asator,	1	.
CG6864-RA	TCACAACCGACCTGCACGGATCAGACGTTGATAGTACCAATGCAACCTCAAGTTCAGTCGCCCGTA	66	+	chr3R	12093747	12093813	12093747..12093813	CG6864-RA,	FBgn0020399,	Mst89B,	1	.
CG11874-RA	GCGTCCGCGACACTAACTGAAAGCCGAATGGAGTTGGTGCATTCATGCCGCAACTATCGTTTAACTCGT	69	-	chr3R	24935490	24935559	24935490..24935559	CG11874-RA,	FBgn0039634,	CG11874,	1	.
CG3774-RB	TTCTGATCATGGCCGGCAATATAGTCCAACACTTTGGTATCGCATGGTCATCGGAACCAGTGGCC	65	+	chrX	6116051	6116116	6116051..6116116	CG3774-RA,CG3774-RB,	FBgn0029849,	Efr,	1	.
CG2100-RA	CGGAGCCGCATTGTTTCTGGAGATGCACCGTTGTAACCTATTCGAGTACATTGGGCTGCCTAAAGAGCC	69	-	chr3R	1561064	1561133	1561064..1561133	CG2100-RA,CG2100-RB,	FBgn0037369,	CG2100,	1	.
CG14593-RA	CCATCCTACTGGGCATGCCTTCGGTTCTTTTCTCCGACATCAAGTCCTACCCTGTGTTCACAGCCAC	67	+	chr2R	1952454	1952521	1952454..1952521	CG14593-RA,CG14593-RB,	FBgn0033058,	CCHa2r,	1	.
CG15738-RA	TCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCGTACGTGGAGGACCAG	65	+	chrX	11786799	11786864	11786799..11786864	CG15738-RA,	FBgn0030352,	CG15738,	1	.
CG11715-RA	ACCGTACACCGCAAACAATAAGCTACACAGAACGGACACTTATCCATACATATAACTCCACTTGTTGGC	69	+	chrX	11376987	11377056	11376987..11377056	CG11715-RA,CG11715-RB,	FBgn0030304,	Cyp4g15,	1	.
CG11802-RA	GACCTGCCATATGTGTCCTATACAGATCGGCCAATCGGTGATTCGCCCAAGATACGCAGCAAGCC	65	-	chrX	11766190	11766255	11766190..11766255	CG11802-RA,	FBgn0030346,	CG11802,	1	.
CG31557-RA	TGTACCATGAGTACAAATGCTGGGAGCGAGTAAATGGGAATAAGCTAGTGGAGGACAACGAAGAGCAGT	69	-	chr3R	1935502	1935571	1935502..1935571	CG31557-RA,	FBgn0046876,	Obp83ef,	1	.
CG30051-RB	TCGATAGCAACGGCCTGTTTATCTCGACAGTTTTCTCAATACCTATTTTGCTTAATTGCATGCTT	65	+	chr2R	8324096	8324161	8324096..8324161	CG30051-RC,	FBgn0050051,	CG30051,	1	.
CG1728-RA	AGCCCGGTCAATTTGTAGATTGCTCACTGAAAATCACACGATGTCCGATTTTGAGAACCTTTCCGGCAA	69	+	chrX	11262528	11262597	11262528..11262597	CG1728-RA,	FBgn0027359,	Tim8,	1	.
CG6211-RA	CGCGGTCGTGACGATGTCATTCCACTGCACACCATTAGCGGCAATGATATCATTCTGACTGGCTGC	66	+	chrX	15209961	15210166	15209961..15210012,15210151..15210166	CG42739-RC,CG42739-RD,	FBgn0261703,	gce,	1	.
CG17278-RA	AGAGCTATGGATCCATTGATCTGTAGTCCAGCGGAAATAACTTAATCATGGAGGGGAGCGAGTTGACGC	69	-	chr3R	16846924	16846993	16846924..16846993	CG17278-RA,	FBgn0046763,	CG17278,	1	.
CG15277-RA	CCTCGCAGGATCTGGACGATAACATCAATATAAATGCGATTAAGGACTGCCTCATGACGCAGCGAGTGC	69	-	chr2L	14908537	14908606	14908537..14908606	CG15277-RA,	FBgn0259213,	CG42313,	1	.
CG10415-RA	GGGGCCGGATGGTAAGGCGCAGAAGGTCAATTACTACTTCATCAACTACAAGACCTTCGTGAACGTGGT	69	+	chr3L	11675692	11675761	11675692..11675761	CG10415-RA,	FBgn0015828,	TfIIEalpha,	1	.
CG9042-RC	TTTTAATCGGACTGCGTAGACACTAGAATTAAATGATTACCCAAAGGTCGTTGCAAAAATAAAAGCTGA	69	+	chr2L	5948768	5948837	5948768..5948837	CG9042-RC,	FBgn0001128,	Gpdh,	1	.
CG31546-RA	TGGCAAGCAGGTCATGTGTCCGCGCTAGTCTCTGCTAGGATATTCTATATGATCATCTGATCCTGTCCA	69	-	chr3R	1460448	1460517	1460448..1460517	CG31546-RA,	FBgn0051546,	CG31546,	1	.
CG15539-RA	CCACGACGCGGACCCCTTTCAGGTTTTGAACTACGGAATAGGCGGTTTCTACGGCATCCACTTTGAC	67	+	chr3R	26333146	26333213	26333146..26333213	CG15539-RA,CG15539-RB,	FBgn0039782,	CG15539,	1	.
CG11859-RA	GCGTGAGGATGATTTGGATGCCGAGGTACATTGCACAGGCTATGGCTTCACTAAGGAGATGGAGCAGGA	69	+	chr3R	21092663	21092732	21092663..21092732	CG11859-RA,	FBgn0039306,	CG11859,	1	.
CG31450-RA	CAACAAGTACTTCCTGGAGTCCACAATTAAATACTAGTGTTAAATACAATAAATGTTGTTAATAGAAAA	69	-	chr3R	4387634	4387703	4387634..4387703	CG31450-RA,	FBgn0051450,	mRpS18A,	1	.
CG32174-RB	CCACACCAGCACCATTGACTTCAAGTATCTGGAAACTTTGCCACCGGATACCTTTGGAGCCGCTTACGT	69	-	chr3L	17422973	17423042	17422973..17423042	CG3874-RB,CG32174-RB,CG32174-RD,CG32174-RC,	FBgn0042641,FBgn0052174,	frc,CG32174,	2	.
CG7371-RA	GCTCTCTTTCGGTCGGAGCAATACGCCCTAGTGGACAATGCCTGTCGGGAATACCTATTTGTCACGGAG	69	-	chr2L	5522598	5522667	5522598..5522667	CG7371-RA,	FBgn0031710,	CG7371,	1	.
CG10463-RA	GGCAGGAACCTCAAAAGGGAGGACTACGATGAAAATGCTCCTCCAACCACATGCAATGGCGTCAGTTCA	69	+	chr2L	19759434	19759503	19759434..19759503	CG10463-RA,	FBgn0032819,	CG10463,	1	.
CG30489-RA	AATGGAGACCACAGTGGCCAAGTTGATTCGCAATTTCCATGTGGAGTTCAATCGGGATGCCAGCC	65	.	.	.	.	.	CG33503-RA,CG30489-RA,	FBgn0053503,FBgn0050489,	Cyp12d1-d,Cyp12d1-p,	2	.
CG5963-RA	TGGTCCTGGAGCAGCACGCCCTCTTCACCAAACTGAAGTTTGTGCAGTATCTCAAGAGTATCCGCAAGA	69	+	chrX	18177841	18177910	18177841..18177910	CG33542-RB,	FBgn0053542,	upd3,	1	.
CG15319-RB	AGGCGATGTGGCTAGAGGGCTAGGGCTAGACTGAATGAATGAATGAGTGTCCAGTAGCCGCAGAC	65	-	chrX	9563619	9563684	9563619..9563684	CG15319-RC,CG15319-RD,CG15319-RB,	FBgn0261617,	nej,	1	.
CG7291-RA	GCGGACATCATCTGCGTCGAGATTCCCGCTAAAATTCAGTAGGCAGTCACCCTCTAAATTAACCTCGAA	69	+	chr2L	1988793	1988862	1988793..1988862	CG7291-RA,	FBgn0031381,	Npc2a,	1	.
CG4062-RB	CGCGACATCAACCTGGACATCAATCGCGTTCTGGGATATCGTTTCTTCTGCAACAAGCTGTGGAACGCC	69	+	chr2R	9089060	9089129	9089060..9089129	CG4062-RB,CG4062-RA,	FBgn0027079,	Aats-val,	1	.
CG6716-RA	GCACCACCATCAGTTCTACAATCCCAGCGCTAACACAGCCAGCTACATAATGCCGGGTGAGAATGG	66	-	chr2L	12084019	12084085	12084019..12084085	CG6716-RA,CG6716-RB,	FBgn0003145,	prd,	1	.
CG15646-RA	GATCGCAAACAGGATCGGAATCGGGATCGGGATCAGGATCTCTCGAGCAGAAGGCCGAAGTGGTG	65	-	chrX	15563201	15563266	15563201..15563266	CG15646-RA,	FBgn0030665,	CG15646,	1	.
CG14479-RA	CCAAGAAGCCGAAGAAGCCAAGAACGACACGACGATCAGACTCGCTGCTTCCAGAAGAACTCCAGC	66	-	chr2R	13390062	13390128	13390062..13390128	,CG43164-RC	,FBgn0262720	,CG43164	1	.
CG12096-RA	TTGCCAATTTGGCCACTACTCCACAGGGCAAGATACTGCTGAACATGCACTTTAGCGGGGCCATG	65	+	chrX	13054879	13054944	13054879..13054944	CG12096-RA,	FBgn0030457,	CG12096,	1	.
CG2109-RA	ACCGGAGACCCTTTGACTTTGCCATTCAGCTAGAACCAAAGACCGTGCGACTTGGCTGAGAATCAAAAC	69	-	chr3R	1295272	1295341	1295272..1295341	CG2109-RA,	FBgn0037330,	mRpL44,	1	.
CG15844-RA	CGACCACTCCTCACGTTCTCATACAATATTGACGGTCCACATCCTATCCGATCAGCAGACGGACGGTGG	69	+	chr2R	13449239	13449308	13449239..13449308	CG43323-RB,CG43323-RA,	FBgn0263076,	Klp54D,	1	.
CG13550-RA	CGGGAGTACGACAATTCGGATGCCCTGATCACGGTGATCAAGCACCTGTTGATGAACCGGCAGTAC	66	+	chr2R	19258217	19258283	19258217..19258283	CG13550-RA,	FBgn0034853,	CG13550,	1	.
CG9176-RB	CACGTGATCAAGACGCACATGAACGAGATGCACTCCAAGTTCGAGACGCAATTCTCCAGCATGGC	65	-	chrX	15284825	15284890	15284825..15284890	CG43395-RB,CG43395-RD,CG43395-RE,	FBgn0263257,	cngl,	1	.
CG5017-RA	GCGTGCCCAACTTTTGGCTGAGGGTTCTCAAAGCATCGTACACCGAGTTCATCAGCAAGAGGGATGAG	68	+	chr3R	23738631	23738699	23738631..23738699	CG5017-RA,	FBgn0039553,	CG5017,	1	.
CG31635-RA	ACATCGACGCACACATAAGTACAAAAGCCGTAGAGGTAACCGGGCAAAAGGTTTCTCCGCACCTGACCA	69	-	chr2L	6636108	6636177	6636108..6636177	CG31635-RA,CG31635-RB,	FBgn0051635,	CG31635,	1	.
CG10520-RA	ACTGTGTCGGACAACCCAAGCAACAGAACTAGCTCAACGGATCCGCCTAACATTCCGCGAATCACTCTT	69	+	chr3R	214623	214692	214623..214692	CG10520-RB,CG10520-RC,	FBgn0003882,	tub,	1	.
CG8701-RA	GGGGCGTTGAATGCAACTGCCTAGATGTTCCAAGCTCCTGTGACCTGATTCGTGAGCTGAAGAAGTTCG	69	+	chr2R	4259384	4259453	4259384..4259453	CG8701-RA,	FBgn0033287,	CG8701,	1	.
CG13130-RA	CCTGTTGGTTTTACCGCCATACATGAGTAATGCCTCGTACTCACCACCCATTCGGCAGCATAATCATAA	69	-	chr2L	9984117	9984186	9984117..9984186	CG13130-RA,	FBgn0040965,	CG13130,	1	.
CG13117-RA	GGGAGGCCTAATCGATTAACCCATTAAGTGGCAAGAGCTGCAGGATAGTGAAATTCCATTCCGTTGCCA	69	+	chr2L	9737091	9737160	9737091..9737160	CG13117-RA,	FBgn0032140,	CG13117,	1	.
CG8760-RA	TCCGTTGGGACCAAGTCAATTGAAATTCAGGCAGACCAAAGACAATCAGCAACAGGAATACGGCTGTGA	69	.	.	.	.	.	CG34400-RC,	FBgn0085429,	CG34400,	1	.
CG11513-RA	GGGCCATTTCACTCACGTGCTGTTCGATGAAGCTGGTCAATGCACCGAACCAGAAACAATGGTACCCAT	69	+	chr3L	3465167	3465236	3465167..3465236	CG11513-RA,CG11513-RB,	FBgn0041164,	armi,	1	.
CG1971-RA	CCGAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGCCAAGTTCTGCGGGAGAGC	65	+	chr3R	27631782	27631847	27631782..27631847	CG1971-RA,CG1971-RB,CG1971-RC,	FBgn0039881,	CG1971,	1	.
CG9653-RA	TCTAAGCGCAAACATATATCTTCCAAGCATATCAGCAAAAAAAACCCCAAACCCTAGGTATAAACCCTT	69	+	chrX	7204820	7204889	7204820..7204889	CG9653-RA,	FBgn0024250,	brk,	1	.
CG31091-RA	GGTATCCACTACATAGGACACTCCCAAGGCACCACGGTTATGTTTGTGCTGCTGTCCTCAAGACCGGAA	69	+	chr3R	21726931	21727000	21726931..21727000	CG31091-RA,	FBgn0051091,	CG31091,	1	.
CG13072-RA	GACGACGAGGATTACGGCTGCTGATTCGTCCGAAATTCCGCCCAACATCTAATTTAAGTTATGCCCGCT	69	-	chr3L	16224247	16224316	16224247..16224316	CG13072-RA,	FBgn0036580,	PDCD-5,	1	.
CG33343-RA	ACCGAAACTCCACAGACATTGTCCGCAAATCCAGTAAATCCCGGGACTAAAGCTACATCATCTCCATCA	69	+	chr3R	20416840	20416909	20416840..20416909	CG34100-RA,CG34100-RC,CG34100-RD,CG34100-RE,CG34100-RF,	FBgn0083077,	mld,	1	.
CG9615-RA	TTCGGAATAAAGTAACCTAGTTTAAGGCGCATCTGATGGTAAAGACCACCCTGTTTGCTTTCCAA	65	-	chr3R	4133169	4133234	4133169..4133234				0	no match
CG9706-RA	CAGCTGGCTACTTCTTGGGCTATGTGGTGTTCATTGCCCTGGAGTCCAAGGATTTCTGCAACACCTACA	69	+	chr3L	16776973	16777042	16776973..16777042	CG9706-RA,CG9706-RB,	FBgn0036662,	CG9706,	1	.
CG16719-RA	GCAAAGATTGTCAAGCGCAGTCATCCTCGTCTGGTGGATCTGCACAACTATACGCCCAAGAGCAGCG	67	+	chr3L	9678456	9678523	9678456..9678523	CG16719-RA,	FBgn0036029,	CG16719,	1	.
CG31781-RB	TGTAAGCACAGCTGAGAAGAAAGGAATTTACAAAATCGAAGGAAGAAGTGAAAGAAGGAGTGAAAAAA	68	+	chr2L	16870899	16870967	16870899..16870967	CG31781-RB,CG31781-RC,	FBgn0051781,	CG31781,	1	.
CG40124-RA	TCCGCCTTCTCCTTCATCACTAGCTGCTCTCCACCTCCGGCCATTTCTGAAGAAACGTATCCACC	65	-	chr3RHet	2136904	2136969	2136904..2136969				0	no match
CG10359-RA	GCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGTGCAGGTTGAAGTGGCCAATCTTTCACGG	69	+	chr3L	3614176	3614245	3614176..3614245	CG10359-RG,CG10359-RE,	FBgn0035452,	CG10359,	1	.
CG14096-RA	GCTCCTTTTGCCTACGCTTCTCCTTTGGCCTACTCCGCTCCTCTGGCTTACACTTCTCCATTGGCTTAT	69	-	chr3L	19459741	19459810	19459741..19459810	CG14096-RA,	FBgn0036871,	CG14096,	1	.
CG13079-RA	GGCCTCACAGCCCTGATTGAGTATGCTGAAAAGTGGGACTACAATCCAACGGCTTGGGAAGTGAGCATC	69	+	chr2L	19562376	19562445	19562376..19562445	CG13079-RA,	FBgn0032808,	CG13079,	1	.
CG15142-RA	ACACCAACCAGGAGCTAGCAATCAAGACGCATGTGCCACAAGTGGAGATAACGAGGGTGAGTGGAG	66	-	chr2L	17498596	17498662	17498596..17498662	CG15142-RA,	FBgn0032645,	CG15142,	1	.
CG33169-RB	TGGATTTTCCATGACACGAACAACACCCTGCTGTTCAAGTGCAGTTCCTGGGAATTTGAGATTTGGGGA	69	+	chr3L	22857381	22857450	22857381..22857450	CG33169-RA,	FBgn0053169,	CG33169,	1	.
CG9754-RA	GCAAAATCCGCACTTTGACCCCATGAACCTGACTCAGCATCAGTCGAACGTTATGTTAGCCCTGCAGGA	69	-	chr2R	17198045	17198114	17198045..17198114	CG9754-RA,	FBgn0034617,	CG9754,	1	.
CG6073-RA	GGCACCATTGGCATTCTGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAGCAG	69	-	chr3R	22013582	22013651	22013582..22013651	CG6073-RA,CG6073-RB,	FBgn0039417,	CG6073,	1	.
CG1989-RA	GCGAGTGAGGTAGAGGAGGGAGCACAATGGGACGCATTTTCTTGGAACATCTTGGGGGTCTGAAACTCT	69	-	chrX	13280922	13280991	13280922..13280991	CG1989-RA,CG1989-RB,	FBgn0026749,	Yippee,	1	.
CG32684-RB	GCACTGAGATCGCAGGAGAAGTACTACATTCTACGGCCAGAGACTTTCGAGAGCTACTTTGTGCTGTG	68	-	chrX	10171962	10172030	10171962..10172030	CG42275-RJ,CG42275-RK,CG42275-RH,CG42275-RI,CG42275-RL,CG42275-RM,CG42275-RN,CG42275-RO,	FBgn0259170,	alpha-Man-I,	1	.
CG4110-RA	GGATGCGGCTATCCCACGGGTCTCTCGGTTCTGCTTAACCCCATGATATCGGACTATTATGGCACCTTC	69	-	chr2L	9772067	9772136	9772067..9772136	CG34059-RA,	FBgn0065108,	ppk16,	1	.
CG10528-RB	AGGACTGCAACTGGCAACTCACATCACTTACAGTTCATTGCAGTCAGCACATTTGACAAATGCCCAAAA	69	-	chr2L	19794095	19794164	19794095..19794164	CG10528-RB,	FBgn0004811,	fs(2)ltoPP43,	1	.
CG33492-RA	GCCTTTGCGGTTGACTAGTTGGTACCTTCCCTTAGAGCCTTTCAAAGAAACTTTATGGGCTGCAATTCT	69	+	chr2R	908003	908072	908003..908072	CG33492-RB,	FBgn0040849,	Ir41a,	1	.
CG11905-RF	AAGCGCAAGGGTTCCTTCAGTGAGGAGGACAACAAGATCTATGCCAGCAGCTTACTGGAACTGGG	65	-	chr3L	16922429	16922494	16922429..16922494	CG11905-RB,CG11905-RF,CG11905-RI,CG11905-RL,	FBgn0036678,	CG11905,	1	.
CG7422-RA	ACGACATTGGTCCGGAACATGATAACGAGTGCTTCTGTGTTGACAAATTGGCGAATGTGATCAAGAGGA	69	-	chr3L	7729256	7729325	7729256..7729325	CG7422-RB,CG7422-RC,	FBgn0035815,	Snmp2,	1	.
CG33151-RA	CGTCCTGATGGCCATTGTCATTTTCCTCATTCAAATCGGACTGGGCAATAAGTCGCTAATGGGCGTTGC	69	-	chr2R	19428607	19428676	19428607..19428676	CG33151-RA,	FBgn0041233,	Gr59e,	1	.
CG11488-RA	CTTGATGTCCATGCTAAAAACCAGATGAATGAGGAAACGCCAAAGTCTACGTAGAAGTCAAAAAAGTCA	69	+	chr2L	204663	204732	204663..204732	CG11488-RA,	FBgn0031231,	mRpL10,	1	.
CG3969-RB	AGACGCGTTGCCGTCAACAGAGTCTGTGTCGGAAGTGAGTCGCTTCTCAAGTGTGGACAATGAGC	65	-	chr2R	9031163	9031228	9031163..9031228	CG3969-RA,CG3969-RB,	FBgn0013955,	PR2,	1	.
CG11379-RA	CCGTAAAACTGGAAGTGTACACCTAGGAGGACATCTGGAGATGGCTCGACTAATGGCCTTGATCATGGC	69	+	chrX	1074256	1074325	1074256..1074325	CG11379-RA,	FBgn0040362,	CG11379,	1	.
CG6154-RA	CTGGAGCAGATCGACCTGATTCGTCGACTTGTTCAGCTCTATCCGCATCACATGGCGCTGGTCAC	65	+	chr3R	22094596	22094661	22094596..22094661	CG6154-RC,CG6154-RD,	FBgn0039420,	CG6154,	1	.
CG15747-RA	TAGGTTCACAAATATCTCGTTCACTGAGCCGGAAACTCCTAATCCAAGTTCTAATACCCACTGCAAGGG	69	+	chrX	13234374	13234443	13234374..13234443	CG15747-RA,	FBgn0030474,	CG15747,	1	.
CG14251-RA	GGAAGCCAGTTGGTTGAGTCCAATTCTTCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCG	69	+	chr3R	22702034	22702103	22702034..22702103	CG14251-RA,	FBgn0002838,	ms(3)K81,	1	.
CG11762-RA	ACGACTCTTCGTCGGGTGATGAAGATACCAATGACAATTCGGAACTGGAATCGGAAAAATGCGCATTCA	69	+	chr3R	4551494	4551563	4551494..4551563	CG11762-RA,	FBgn0037618,	CG11762,	1	.
CG9918-RC	CGGCATAGTGCGGGTCATAGTGAAGCACTCATTCCAGCTGTCCACGTTCATATTCTTCCTGGCTCCGAT	69	-	chr3R	9927858	9927927	9927858..9927927	CG9918-RD,CG9918-RE,	FBgn0038201,	Pk1r,	1	.
CG1407-RA	GGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTGTAGTGTGTGCAGTTGCT	66	-	chr2R	5919245	5919311	5919245..5919311	CG1407-RB,CG1407-RA,CG1407-RC,	FBgn0033474,	CG1407,	1	.
CG31658-RA	GCCCTCTGCGCATGCACAACTTGAATCTAAGCATCACATTCATGGAGCAACAGCTTAAGAAACAGGAAA	69	+	chr2L	811123	811192	811123..811192	CG31658-RA,	FBgn0051658,	Nnf1b,	1	.
CG33198-RA	TCGAAAACAAAGGAGCAAACACCCACATATTTGAAGAGGATTAATCATGGACATCTCAAAGGCACCAAA	69	+	chr2R	14165079	14165148	14165079..14165148	CG33198-RA,	FBgn0053198,	pen-2,	1	.
CG32075-RA	GGATGCTGGCAAACTGCATCGCAAGGACAAGCTTAAGTTTGAAAAGGCTGTGACAGATCTTCTGGAGAT	69	-	chr3L	11057051	11057120	11057051..11057120	CG32075-RA,CG32075-RB,	FBgn0052075,	CG32075,	1	.
CG30160-RA	GAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCGATGGAGCAGTCTGATCATCGCCCT	65	.	.	.	.	.	CG30160-RA,CG18816-RB,CG18816-RC,	FBgn0050160,FBgn0042086,	CG30160,Tsp42Eb,	2	.
CG15282-RA	CGAGTGCAACATCGAAGCATCCTCATCTTCTGGGATATTAGTACAAATTGAATTCATTTTCAAATTCAA	69	+	chr2L	14712671	14712740	14712671..14712740	CG15282-RA,CG15282-RB,	FBgn0028855,	CG15282,	1	.
CG3410-RA	GGGTCCTGGTGAACCCCATCACAATAATGACCAAGAGCGATGCGTTTCAATCTTGCGAAAACTCATGCA	69	-	chr2L	3716931	3717000	3716931..3717000	CG3410-RA,	FBgn0040104,	lectin-24A,	1	.
CG33473-RB	GGAATCCAGCGGAAACTGTGTGCCATCAAGGAACGATGAAAAACTTGCGTAACGCTAATCAAAACCACT	69	-	chr2R	6870671	6870740	6870671..6870740	CG33473-RB,	FBgn0040765,	luna,	1	.
CG31437-RA	ACACCACCTTCCATGAACCACAAATCAGGGAGGAAGATCCAGACACCGAATCGGATAAGGACAGTCGCA	69	+	chr3R	21209696	21209765	21209696..21209765	CG31437-RA,	FBgn0051437,	CG31437,	1	.
CG13194-RA	AGTAGCGTTAGTGTTAATCATGCAATACCTGCCTTGCCAAAAAACTACAACTACTTGTACAGTAACGAG	69	+	chr2R	7613043	7613112	7613043..7613112	CG13194-RB,	FBgn0033649,	pyr,	1	.
CG33193-RA	CCATCGACTCATCGCGAAATCAGTGCCTTATACGAAACCAGACGAGATGGTAGCCAAGCAGATCCATGA	69	-	chr3R	18884453	18884522	18884453..18884522	CG33193-RA,CG33193-RB,	FBgn0053193,	sav,	1	.
CG5342-RA	GCTCGAAAGGATTCCTCTGGTGGTACAGGCGATCCTACTCATACCCTCACTGTACTGGAGGACGACGC	68	+	chr3R	7406050	7406118	7406050..7406118	CG5342-RB,	FBgn0037916,	CG5342,	1	.
CG15032-RA	CGACCGCCATCGAATTCCATGTACCATTTCAATTACCGATCGCCGGGTAGTCCAATGCCTGTGGCTC	67	+	chrX	15204791	15204858	15204791..15204858	CG42739-RC,CG42739-RD,	FBgn0261703,	gce,	1	.
CG8743-RA	CCCAGCCCAACAGTGGTTACACCAGCCTTTCTAGTATTATGAAGTAACTGGGTGCGCTATGTCGACCCG	69	.	.	.	.	.	CG42638-RA,CG8743-RA,	FBgn0261361,FBgn0262516,	CG42638,trpml,	2	.
CG5718-RA	AAGGGTCGTGTGGTCACCATCGATGAGAATGGCAAGGAACAGGTTGTCAAGGGACTGTACTCCTGC	66	-	chr3L	11916513	11916579	11916513..11916579	CG5718-RA,	FBgn0036222,	CG5718,	1	.
CG11335-RA	GCCACAGACACTACCACAGCATGAATGTTTTTGCCACCTTTGATGTTTACGACCTCAACTACCGGAAGG	69	-	chr3R	27284692	27284761	27284692..27284761	CG11335-RA,	FBgn0039848,	lox,	1	.
CG32300-RB	GGAAAGCTCTTGGGTCCCCAAAGTGACTTGCTTTTGAGCTACACACTCCAAGCAAACGCAGATTCGGG	68	-	chr3L	2259893	2259961	2259893..2259961	CG32300-RB,	FBgn0015360,	oxt,	1	.
CG40218-RA	TGGACCGTCAAGACTTTTTGGAGAGAACCGATCTTAGGCAGTTTGAAATGGAAAAGAAGTTGCGGCTGT	69	-	chr2RHet	470940	471009	470940..471009	CG40218-RA,	FBgn0043842,	Yeti,	1	.
CG15767-RA	CAATCGGCACTTCCACAAATGCTGCAAAGGCTTGACCGTGTTCAGCGTCATAACCTTTGGCTGGG	65	+	chrX	5683996	5684061	5683996..5684061	CG15767-RA,	FBgn0029809,	CG15767,	1	.
CG14264-RA	CGACATTGTCCAAGTGTTGGCCCAAATGCGCGAAAAGATACCCTACACTCTCGCATTACAACACGTGTA	69	+	chr3R	23166744	23166993	23166744..23166781,23166961..23166993				0	no match
CG11327-RA	AGGAAACGGATCCGGACCTAAAACAAACTGGCAAGCCCTTGAGTTTCTTGAGGCGTCTAGTCAACCACA	69	-	chr2L	6685143	6685212	6685143..6685212	CG11327-RA,CG11327-RB,	FBgn0031849,	CG11327,	1	.
CG40154-RB	CCACAGCCTCAATAACCGTGGTCATCATCTTTCTTGTCTACCGTCTGAAAGCCAAACGTCAACAACCAT	69	-	chr3RHet	6736	6805	6736..6805				0	no match
CG30380-RA	GTAACTGCGCTATTGCTCAAGGCTTTGTTTGTGCTCGGGCTGACCGTACTTTCGGGACCAGGAAG	65	-	chr2R	3826992	3827057	3826992..3827057	CG30380-RA,	FBgn0050380,	CG30380,	1	.
CG40451-RA	TCTGGGGTGGTATGTTCAGTACCATTGATTGTACCCTTGTCCACTTTCGAAAAAAAGAAGATCCGTGGA	69	-	chr3RHet	1823485	1823554	1823485..1823554	CG40451-RA,	FBgn0067318,	CG40451,	1	.
CG13028-RA	TGGCAGTAACCTACAGGACCTGGTAATGCTGAGAGGAGTTCTTCAGGCTCTGAAAGCGAGTCCCTCGAA	69	+	chr3L	16916627	16916696	16916627..16916696	CG13028-RA,	FBgn0036676,	CG13028,	1	.
CG31058-RA	TCCCAAGCTCCAAAGTATACCCAATACCGAGTATGTGCGACCACCACAGAACTTTGTCTTGCCACCGCA	69	-	chr3R	23474181	23474250	23474181..23474250	CG31058-RA,	FBgn0051058,	CG31058,	1	.
CG15910-RA	TCAGTGCCGGTTCCTTATACTCAAGGCAATCTGGCACAAAAATATGGATCACTGCGGGTTTTTGTACGA	69	+	chrX	9155247	9155316	9155247..9155316	CR15910-RA,	FBgn0030117,	ric8b,	1	.
CG40160-RA	AGAGCAACAAAGTAAATCGATCTACATCTATAAAGTAATAGACAAATTTTTACCGTAAATAACTATGGT	69	.	.	.	.	.	CG40160-RA,	FBgn0058160,	CG40160,	1	.
CG15457-RB	TGGAGTGCGTGCTCAAGAAGATCAAGTTGGTGAGTAGCCGGACGTTTGTCACAACCAGAACTAAAAGGT	69	-	chrX	20289437	20289506	20289437..20289506				0	no match
CG7326-RA	CGCTGCCCCAAATGGATGTATCACCGAACATGTTCCTAAAGATTCAGAAGCGCCTCGAGACGAATGGCC	69	-	chrX	18756601	18756670	18756601..18756670	CG7326-RA,	FBgn0030970,	CG7326,	1	.
CG40172-RA	GAACAAGAAAAGGCAGGCAAAAAATAGTCACTTTGAATCGGAACAGAAAGGAAAAGCGATACTGA	65	-	chr2L	20249283	20249348	20249283..20249348	CG40172-RB,	FBgn0058172,	CG40172,	1	.
CG2331-RA	GCCCAACACCACCTGGACAGACATCGGAGGTCTGGAGAGCGTCAAGAAGGAATTGCAGGAGCTGG	65	+	chr2R	5879447	5879512	5879447..5879512	CG2331-RA,CG2331-RC,CG2331-RD,	FBgn0261014,	TER94,	1	.
CG2904-RB	TTGACTCATCGTTTCGAGCAAACCTCCATTCGATCCTACGCCTCGCAGGAGCTATTGTCCCAGCC	65	+	chrX	3749166	3749231	3749166..3749231	CG2904-RA,CG2904-RB,CG2904-RC,	FBgn0000542,	ec,	1	.
CG31050-RA	GGGGAACTCGTCGTGCATTGGACTCGTATTAGTGGAAGTACTCAGTCTCCCATCAAATTGCTGCCTCCT	69	-	chr3R	24475870	24475939	24475870..24475939	CG31050-RA,	FBgn0051050,	CG31050,	1	.
CG11637-RA	CGGCGAATGCGAATCAGTTGCGATTCCTGATCACCTATAACGACAAGGCTTCCACGTACATATACAGCA	69	+	chr3L	18885864	18885933	18885864..18885933	CG11637-RA,	FBgn0036822,	CG11637,	1	.
CG4181-RA	AGCCCGGATCGGATGAGGACTTGAAGAGAATCGAAACCGCGTTTGGATTTCTCGACACCTTCCTGGAG	68	+	chr3R	8198077	8198145	8198077..8198145	CG4181-RA,	FBgn0010038,	GstD2,	1	.
CG9081-RA	TGGCCGAATTGGTGACTAAAAGTGGAAATGGCATTCGACTTCGGATCTTGCCACGGGATGAGAACGGAA	69	-	chrX	15007975	15008044	15007975..15008044	CG9081-RA,	FBgn0030615,	Cyp4s3,	1	.
CG6280-RA	GTGGAGCACTACGTGGATCGTCCGTACCCAGTGGAGACCATTGTCGAACATCCCGTTCCATATCC	65	+	chr2R	9645492	9645557	9645492..9645557	CG6280-RA,	FBgn0033866,	CG6280,	1	.
CG40440-RA	ATTGCTGGAATGAAAGACTATCACACTTTGCGATTAGATGAGCGAGAAGACACAATTGCGACTCGAACA	69	+	chrYHet	191958	192027	191958..192027	CG40440-RA,	FBgn0046697,	Ppr-Y,	1	.
CG3395-RA	ACTAAGCAGTGGTAGCCAGCTGTAGCCAAGACAAATACATGGCGCAGACTTGATAAAAATCCGTTTGCT	69	-	chr3L	9503016	9503085	9503016..9503085	CG3395-RA,CG3395-RB,CG3395-RD,	FBgn0010408,	RpS9,	1	.
CG33466-RA	ATATGCGGCTACAACAACCAGACATACAACTCGTGGTGTGAGATGCACAAACACTCCTGCGAATCCCGC	69	-	chr2R	11111682	11111751	11111682..11111751	CG33466-RA,	FBgn0259878,	Fs,	1	.
CG31380-RA	GGCCCCGAGACTTCAGAGATTGGATGAGCAGCATGTGAGTTTGGTTCTTAGGAAGTTGGCCAAAATGCA	69	-	chr3R	21614716	21614785	21614716..21614785	CG31380-RA,	FBgn0051380,	CG31380,	1	.
CG1951-RA	CCAACGAGCTGGAGAACTCTACTCTCTCCCCCTACGGTTCCATCAATGGTAATAAGATCAACGATGACA	69	+	chr3R	24855324	24855393	24855324..24855393	CG1951-RA,	FBgn0039623,	CG1951,	1	.
CG32085-RA	ACCTCCAGTCGGCAAGTTCCTCGCGTGCTATGTGACTTTAACTTTCCGTCAACACTGTACTCTATCCCT	69	-	chr3L	11643879	11643948	11643879..11643948	CG32085-RA,	FBgn0052085,	CG32085,	1	.
CG15615-RA	CTGCAGCTTCCCAGGTGGATAGCAAAAGTGTCGCTCAGCAGAGGATCGATCTGGGATTGGGTCTG	65	-	chr2R	12682070	12682135	12682070..12682135	CG15615-RB,	FBgn0034159,	CG15615,	1	.
CG40368-RA	TAGAGGCATTATTCAAGGAGTACGGAGGGAGACATGCCGTAGAGGTCAGCCTCGACTTCACTAGC	65	-	chr3RHet	297983	298048	297983..298048				0	no match
CG8607-RA	GGCAAACTACTTTGGTTTTCCTACCATTCGCTTCGCTTTAAAATCAAATATGCAACGATTCCTGAAGGT	69	+	chr3L	7313183	7313252	7313183..7313252	CG8607-RA,	FBgn0035760,	CG8607,	1	.
CG17486-RA	GCGCCAACTTGCTGTGCAAAACGAACTTGAAAGGGACTGGCAACGTATTTCGGCCCGTAATTTAGCCAG	69	+	chr2R	507928	507997	507928..507997	CG17486-RB,	FBgn0032997,	CG17486,	1	.
CG15814-RA	CTGGATGCTGGGACTGGAGTAGATCCTGATACCGGCACTAGCTTTCCTCGGCGTCTAGTCAAGCAC	66	-	chrX	17742629	17742695	17742629..17742695	CG15814-RB,CG15814-RA,CG15814-RC,CG15814-RD,	FBgn0030873,	CG15814,	1	.
CG5499-RA	CCGAATTCCGTAGAAACAACTCGCACGCTCCGGTTTCGTGTTGCAACAAAATAGGCATTCCCATCGCG	68	+	chr3R	22692664	22692732	22692664..22692732	CG5499-RA,	FBgn0001197,	His2Av,	1	.
CG7352-RA	TCAGGTGATGAATGACCGGGAGCTGAGCCTTCTGATGCAGAAGCAAATCCAGGAAGAGGATCGAGC	66	+	chr3R	4174036	4174102	4174036..4174102	CG7352-RA,CG7352-RC,	FBgn0037581,	CG7352,	1	.
CG14080-RA	GCGAAGCTTTTCCTAACTTGGTTCTCGCGCAAAACACCCGGATAAACCACACATACATATGAGCCGCTT	69	-	chr3L	19061681	19061750	19061681..19061750	CG14080-RB,CG14080-RA,	FBgn0036844,	Mkp3,	1	.
CG1615-RB	GCATGTATGCCACAAAGTCGATAAGGCTGCCAAAAGTCCTTAGTTGTTATGCTAATGTTATCCTTAAAC	69	-	chrX	10772392	10772461	10772392..10772461	CG1615-RB,CG1615-RA,	FBgn0017561,	Ork1,	1	.
CG1532-RA	AGCGACTGGATCGAAACATCGAAAAGGATCCCTTCCAACCGAAATGACTTTCCCAGCAATCCTTGAGCA	69	-	chrX	20897412	20897481	20897412..20897481	CG1532-RA,	FBgn0031143,	CG1532,	1	.
CG8712-RB	GGAGCGAATCACCATGCAGAACGTTATTCAAGATCGAAGGTGCTGTGCAGAGAGCATGTTGTTGCGGGA	69	-	chr2R	3985607	3985676	3985607..3985676	CG8712-RA,CG8712-RB,	FBgn0033258,	CG8712,	1	.
CG32164-RA	GCCTTCGCGCCCTATTTGCAATCTGCATTCGAGAACGTCTACAAGATGATTGATCATCCGCAAGGCGAC	69	.	.	.	.	.	CG32164-RA,CG32165-RA,	FBgn0042177,FBgn0042178,	CG32164,CG32165,	2	.
CG13082-RA	GGAGGGGCAGTACAACATTCGTGCTGATCTGGAGAACTTCATGATCCTCCTGATTCCACCTGGACC	66	+	chr2L	19538770	19538836	19538770..19538836	CG13082-RA,	FBgn0032803,	CG13082,	1	.
CG17386-RA	GGCCATTCCCGTGGATGTGCGTCAGTTCATGAACAAGTATCCAGAACTGCAGCAAAAGGAGTGTGCTCT	69	+	chr2R	10309772	10309841	10309772..10309841	CG17386-RA,	FBgn0033936,	CG17386,	1	.
CG7283-RB	CGTGCTTGGATAGAAGCTCCCATGGGAGTTGAGTTCATCACGTCATCAGGTAGTCGAGGACATGTGGCT	69	+	chr3L	11816480	11816549	11816480..11816549	CG7283-RD,	FBgn0036213,	RpL10Ab,	1	.
CG17420-RB	TCGCCCGGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTTATAGAATCCGTGT	69	+	chr3LHet	2398273	2398342	2398273..2398342	CG17420-RA,CG17420-RB,CG17420-RC,CG17420-RE,CG17420-RF,CG17420-RG,CG17420-RH,CG17420-RI,	FBgn0028697,	RpL15,	1	.
CG41125-RA	GGTGCGTCTCCTGGAACGTTCGAAGGCTGTCTTGCAGACGCTGTATCTTGTTGCATGCAATACGTCATT	69	+	chr3RHet	1962968	1963037	1962968..1963037				0	no match
CG32046-RA	CTGATTTGGATACCAGTTTTCAGTTCTTCAGTTATCGAACCACAACTAATTTGTCTTCTGACTGGCGCT	69	-	chr3L	9727780	9727849	9727780..9727849	CG42268-RD,CG42268-RF,CG42268-RH,	FBgn0259163,	CG42268,	1	.
CG9802-RB	CCGCCCAAAACCTCATCCCTCAACCCACCACAACCATCTCTCGCCCCAATTATTAGTTTCGTAGGCGTA	69	-	chrX	16483294	16483363	16483294..16483363	CG9802-RB,CG9802-RA,	FBgn0015615,	Cap,	1	.
CG2051-RA	TGCAGACGTTCATCTTGTGGTTCGTGGATGCTGCCTCCTACATCGACACTGATGATCCACAGTGGTGTT	69	-	chr3R	1613943	1614012	1613943..1614012	CG2051-RB,CG2051-RA,	FBgn0037376,	CG2051,	1	.
CG9322-RA	AATCGCGATCGCAGTGAAAGGGGTCTAAGCAACTCCATTCAGAATCTGGATCAGGTCCTGGAGGA	65	+	chr3R	9584788	9584853	9584788..9584853	CG34383-RC,CG34383-RB,CG34383-RD,CG34383-RE,CG34383-RF,	FBgn0085412,	CG34383,	1	.
CG9521-RA	CAGCAGGATGGTCTGAAGTACAGGGACTACAATGGACGCATTCAGAATGGTGTGGCCTTCCTGCA	65	-	chrX	14746424	14746489	14746424..14746489	CG9521-RA,	FBgn0030588,	CG9521,	1	.
CG3495-RA	TGCCTGTCCACATGCATTTTTCCGGACAAAACCAGCTACCCCATAGATGAGACCATGGTGCACAATGG	68	-	chr2R	18775790	18775858	18775790..18775858	CG3495-RA,	FBgn0034794,	Gmer,	1	.
CG15739-RA	TGAATCATAGTAAGCAAACAGAGTTGACGAACTTGGGAGTTCCAGGAAAACAAAACCACTGCAACCATT	69	+	chrX	11769079	11769148	11769079..11769148	CG15739-RA,	FBgn0030347,	CG15739,	1	.
CG14410-RA	CCCAATGAAGAGCAGTACGTCGGGAATCAGTTGCCACTTAGAAATCCCGCTCAATCGACTCCAACT	66	+	chrX	14731084	14731150	14731084..14731150	CG14410-RA,	FBgn0030583,	CG14410,	1	.
CG33293-RA	CGGCTGCTAGACGACTACATTGTGCCCTTTGAATGCGGTCTTTGATTCTCGATCCCCATCTCCTGTTCA	69	-	chr3R	1066001	1066070	1066001..1066070	CG33293-RA,	FBgn0053293,	CG33293,	1	.
CG31623-RA	AATCTTCAGATTTTGAGCGACGAAGGAGACGTTGTGGTCGAAGAGCTCAGTGTCAATGCTCAGGTGTCG	69	+	chr2L	21367118	21367187	21367118..21367187	CG31623-RA,	FBgn0023090,	dtr,	1	.
CG3400-RB	GCCGGTCATTGCGAGGAAATGACGTACGAGCAAATCAAGGAGAAGTTCCCCGAGGAATTCAAGGCTCG	68	+	chrX	19402041	19402109	19402041..19402109	CG3400-RH,CG3400-RD,CG3400-RE,CG3400-RF,CG3400-RA,CG3400-RI,CG3400-RG,CG3400-RB,CG3400-RJ,CG3400-RK,CG3400-RL,	FBgn0027621,	Pfrx,	1	.
CG31292-RA	CGGATGACGTCTTGACCCTCTCGAAGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACA	69	.	.	.	.	.	CR31292-RB,CG3303-RA,	FBgn0051292,FBgn0038381,	CR31292,CG3303,	2	.
CG15221-RA	CTTTCTCGGTGAACATCTGGATGCTGATCGTGTTCCGCTTCCTGACGGGCTTCTTCATTTCCGGC	65	+	chrX	11628567	11628632	11628567..11628632	CG15221-RB,	FBgn0030331,	CG15221,	1	.
CG15194-RA	GTCGATGAAGTGGAAGTCGGCGCTCAATCACATCGGACTGCTCGTCTCCCTGTCCATTTACTGCG	65	+	chrX	11354078	11354143	11354078..11354143	CG43155-RC,	FBgn0262685,	CG43155,	1	.
CG3034-RA	CGAGAAGCGGGTTTGTCTAAAATAAATTGTTGAACTAAGTTAAGGTAGAATTAGGACAATGGCCA	65	+	chrX	822190	822255	822190..822255	CG3034-RA,	FBgn0040339,	MED22,	1	.
CG40203-RA	CCTCCACCAACAGCAAGCCTCAGCAAACTTGTGATGGTGTCTTTGGTCGGACCTACCCAAGTGATCATT	69	+	chrU	448275	452512	448275..448312,452480..452512				0	no match
CG11422-RA	CCATTCCGGGAGAAAAGCTGAGGAACATTATGATGGAGGCTTCCAAGGGATGCATTCATCCTGAGGGCG	69	-	chr3R	1802063	1802132	1802063..1802132	CG11422-RA,	FBgn0010403,	Os-E,	1	.
CG5525-RA	ACCAACAAGTTTGTGAAGATCACCGGCATTCAGAACATGGGACGCACTGTCTCGATCATCTGCCGC	66	-	chr2L	12691050	12691116	12691050..12691116	CG5525-RA,	FBgn0032444,	CG5525,	1	.
CG33503-RA	CACGGATATCGAACAATAATTTGCTTCTCATTTGTGGCCTTTACTTGTGTTCCTTATAGTTGCGATTTT	69	.	.	.	.	.	CG33503-RA,	FBgn0053503,	Cyp12d1-d,	1	.
CG3066-RB	TCCCCAATATGATCCTGCCAACAAGAACCGCATTCACGACATTGCCTTATTGCGATTAGATCGGCCCGT	69	+	chr3R	3588464	3588533	3588464..3588533	CG3066-RD,CG3066-RA,CG3066-RB,CG3066-RC,	FBgn0037515,	Sp7,	1	.
CG3151-RA	TAGTCAAACCACTTGCAAATAGACAATGCAGAATGAGAAGGCAGCTAGATGCGAAAGAAAACCAAACAA	69	+	chr2L	2964682	2964751	2964682..2964751	CG3151-RC,CG3151-RE,CG3151-RB,CG3151-RF,CG3151-RG,CG3151-RH,CG3151-RI,	FBgn0010263,	Rbp9,	1	.
CG15632-RB	CGATCTGGCTTAGTTCCGTGGAGATAAGCAGCTAAGTGACTTTGTCCCGACATCCCATGGCCCATGG	67	-	chr2L	4698660	4698727	4698660..4698727				0	no match
CG15415-RA	GGGGAAACCACCAAGGAAAATGACAAGCCAAAGGAAAGTGAAGACAACCAGGACGTAAAACCCACAATT	69	-	chr2L	3527612	3527681	3527612..3527681	CG15415-RB,	FBgn0031549,	Spindly,	1	.
CG31012-RA	TCGCGGGAAATTCGACAATTGGATGTTTTAATTGATCAGCGGATCAGATCAGCCGTTAGATCGAACGAT	69	+	chr3R	26652451	26652520	26652451..26652520	CG31012-RA,	FBgn0027598,	cindr,	1	.
CG6437-RA	GGCCGCCAAGTACGACTTTGTGATGATCTCAGACAGCGGCATCAAGATGAAAGACGACACGCTGC	65	+	chr2R	17964255	17964320	17964255..17964320	CG6437-RA,	FBgn0067102,	GlcT-1,	1	.
CG11798-RB	AAAACGCGGAATAGAAAGTCGGCGAGAACAAGATGGAAACACAAGAACAACTTACAAAATACTCAAAGA	69	+	chr2R	11031786	11031855	11031786..11031855	CG11798-RC,CG11798-RA,CG11798-RB,CG11798-RE,CG11798-RF,CG11798-RG,CG11798-RH,CG11798-RI,	FBgn0015371,	chn,	1	.
CG3814-RA	TGCGAAAGTGTACGCCGTAAGACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGCGGA	65	-	chr2R	8763183	8763248	8763183..8763248	CG3814-RB,CG3814-RA,	FBgn0025692,	CG3814,	1	.
CG17348-RA	ACCAGCGGTGCTGAAGCATGCCAAGACCTGTAAATATAACAAGAGGCGACGTCGCAAGATTTTCCAACA	69	+	chr2L	19207736	19207805	19207736..19207805	CG17348-RA,	FBgn0015380,	drl,	1	.
CG12158-RA	CAAATTCAACATGAAGCAGTTCGCATTGTTCAGCATCTTCCTTCTAATTCTGGCTGTGGGTTTGG	65	-	chr2R	5250339	5250404	5250339..5250404	CG12158-RA,	FBgn0040775,	CG12158,	1	.
CG6036-RA	TGGGTCATAAAATGGGTGGCTTCTTGGAAAAACCAGAAACTGAAAAGCAGGCTCAAGAGGGTCATGGGA	69	-	chr3R	22171098	22171167	22171098..22171167	CG6036-RA,	FBgn0039421,	CG6036,	1	.
CG9741-RA	AGCTGGAGCTTCCTACGTCCAAATCTACACGGCTTTAGTGTACGAGGGACCCGCTCTTGTGGAAGACAT	69	-	chr3R	4477328	4477397	4477328..4477397	CG9741-RA,CG9741-RD,	FBgn0000447,	Dhod,	1	.
CG9697-RA	AGTGCCAGTTGGTACTTAGGCAAATTCGAGCCGATCATATGCGCAGAAAGTTCAGGGATATTGGCTATA	69	+	chr3L	16719822	16719891	16719822..16719891	CG9697-RA,	FBgn0043577,	PGRP-SB2,	1	.
CG32135-RA	GCCAGTCCGGAGTTGTCTCTGCACTTTTGTCCGCTGCATATGGTCAAGCTGCTAGAAACAGTGCTAGTT	69	+	chr3L	13960347	13960416	13960347..13960416	CG32135-RA,	FBgn0263232,	Nxf3,	1	.
CG6023-RA	AGGCTATGCCCACGAGTATCCAGATCCGTATTCGTCTACTAGACACCCTCATCTGCCTTAGACCCTATT	69	-	chrX	18208362	18208431	18208362..18208431	CG6023-RA,CG6023-RB,	FBgn0030912,	CG6023,	1	.
CG3045-RA	AACCCGGGCGTAATAAGTGACCTGCTTGATGTGGAGTCTAATCCCTGCAAGCCTCAGTACACCCC	65	-	chr2R	18060906	18060971	18060906..18060971	CG3045-RA,	FBgn0034703,	CG3045,	1	.
CG12227-RA	CCCTTTGTGGGCGAAAACGGACCATGCCAGTCATCAAATTGCAGTCCTCCGATGGCGAAATTTTCG	66	-	chr2R	19346166	19346232	19346166..19346232	CG12227-RA,	FBgn0034863,	skpF,	1	.
CG31395-RA	CGGCGACAAATTGGGCAGTACTACAAAATCCAAACTTGCATTCGAAAGCCGCTACGAACATGGCAATTT	69	+	chr3R	6299197	6299266	6299197..6299266				0	no match
CG7362-RA	GGCCGCTCAATCCTTGCTTTTTCGTGGCGTTTATCCACTCCTTGTCAAGGAAATGGTTTATGGCAGCGT	69	-	chr3R	10578825	10578894	10578825..10578894	CG7362-RA,	FBgn0038258,	CG7362,	1	.
CG7334-RB	TGCCCATCGAACTGATGAACGGGGTGACCTTCGGTCTATTTTATGCAACAATGGCCTCCTATGCAAGCA	69	+	chr3L	11681086	11681155	11681086..11681155	CG7334-RE,CG7334-RC,CG7334-RD,	FBgn0036191,	Sug,	1	.
CG2140-RA	ATGCCCGCGACATGATGAAGAAGTACAAAATCGGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTG	65	+	chr2R	3422918	3422983	3422918..3422983	CG2140-RB,CG2140-RA,	FBgn0033189,	Cyt-b5,	1	.
CG7584-RA	GGAGATCAGGAAAATCCGCGTTGATTGCCTCAAGGAGAATCCGCTGAGCAACGACCAGATCTCCCA	66	-	chr3R	25511833	25511899	25511833..25511899	CG7584-RA,	FBgn0039682,	Obp99c,	1	.
CG5987-RA	CTGCGCATCTTCGTGTACAACGAGGGATTGGCCAGATTTGCTACGAACAAGTACGTGGAGCCCAC	65	-	chr3R	23075369	23075434	23075369..23075434	CG5987-RA,	FBgn0039501,	CG5987,	1	.
CG3939-RA	GGAGACCGATCCGAAGAAGTCCAATTTTGTCGCCCAATAAAACGCGATTTGGCTTTGGCTTAAACTCA	68	+	chrX	3070189	3070257	3070189..3070257	CG3939-RA,	FBgn0040396,	CG3939,	1	.
CG11413-RA	TCTGTGACAAGTTCATCACTCGGCTTTAAAAACAATCTATAAACCACTTCAGTGTAAAATGCTTATACT	69	+	chr2R	20424221	20424290	20424221..20424290	CG11413-RA,	FBgn0035022,	CG11413,	1	.
CG40376-RA	GCACTATGGGCAGCAATCCGCACAACATGGCAGCACTAGAATATCAATAGATAGAGGCAACGCCGCTCG	69	+	chrU	1972376	1972445	1972376..1972445				0	no match
CG4029-RA	CATGATCAGGCCTCAGAAGTAAATAGTACAAAGAGCTAGACTTTTGGGTCCAAGCAGTTACAAAGCCAA	69	+	chr3R	6187018	6187087	6187018..6187087	CG4029-RA,	FBgn0015396,	jumu,	1	.
CG12844-RA	CCCGAAATAGACCCGATCGGCTGACATTGAAAGGGATTGTGGCCTTTGTTTAGCTAGGTGGCTGCC	66	+	chr2R	2921230	2921296	2921230..2921296				0	no match
CG10348-RA	GCCCTTAACACCACCGCAATGTTCGATACCTGCCGTACATCCCACACTCCTAGAAGCCATGACCAAGAA	69	-	chr2L	18715829	18715898	18715829..18715898	CG10348-RB,	FBgn0032707,	CG10348,	1	.
CG6323-RB	GGTGCCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGCTGCGGATTCAATGCCACCG	65	-	chr3R	22789067	22789132	22789067..22789132	CG6323-RA,CG6323-RC,CG6323-RD,	FBgn0039465,	Tsp97E,	1	.
CG9660-RA	GCACTCACTTGATGTCCTTAATTGAAAACCTAATGCCCGCTATTTGTGGACCAGGTGAGGTATCCGCCC	69	-	chr2L	3068872	3068941	3068872..3068941	CG9660-RA,CG9660-RD,CG9660-RC,CG9660-RB,CG9660-RE,CG9660-RF,	FBgn0015600,	toc,	1	.
CG11648-RE	ATTCATTATTTCGGTAAGTACACCAAAGAGGAGGATGCTACCACATCGCAAGCGACCTCTCACCATCGA	69	-	chr3R	12753237	12753306	12753237..12753306	CG11648-RE,	FBgn0000015,	Abd-B,	1	.
CG40356-RA	CCAACACGAAACTGAGCGTTCTTACGTGGCCTCTTCGATCATCGGCTTATGTATGCTCTCCTTGCCGGT	69	+	chr3LHet	945848	945917	945848..945917				0	no match
CG1962-RA	TGGAGTGCTCAAGAAGGCAGCTGATAATAACGAAGAAGACAAGCTTCCGTCCCTGCATGACGACGCACA	69	-	chr2L	20679963	20680032	20679963..20680032	CG1962-RA,CG1962-RB,	FBgn0032876,	CG1962,	1	.
CG14459-RA	ACCAATACAACCTGCAGCCATCGAATGACAGTCGCAACATCTACAACAACCCCTATATTCCGCCGCA	67	-	chr3L	22576326	22576393	22576326..22576393	CG14459-RB,	FBgn0037171,	CG14459,	1	.
CG15330-RA	AGCATCCAATAATAACACCTTGGATCTACTTGTCGTGGGTCAACAGCTGCAAATGCATCGTCCACC	66	+	chrX	7850426	7850492	7850426..7850492	CG15330-RA,	FBgn0029987,	CG15330,	1	.
CG13444-RA	GCAAAAACAACGTAACAAAATAGGTAAAACAGTATAAACAACGCAACATTGTAAGCTGGCTGAAAG	66	-	chr3L	15886935	15887001	15886935..15887001	CG33989-RC,CG33989-RD,CG33989-RE,CG33989-RF,CG33989-RG,CG33989-RH,CG33989-RI,	FBgn0036542,	pHCl,	1	.
CG14964-RA	GATCTGGAGACCTATCATCCGCGTACCATGGGTGCTGGAACCTTTACACCATACAGGGCTCCCAC	65	-	chr3L	3174553	3174618	3174553..3174618	CG14964-RB,	FBgn0035410,	CG14964,	1	.
CG1950-RA	ATCTAATGGCCCTGGTCTCGGATCGTCAGCGATGCTACGAGCGGAAGATCCAAATGCTGGTCAAC	65	-	chrX	11949790	11949855	11949790..11949855	CG1950-RA,	FBgn0030370,	CG1950,	1	.
CG32041-RA	ATGAACTGGACAAGGCTCTAAATCTGGATGGATCTGCTTTTAAAAACAAGTACGGAAGATCGAAGCCGG	69	+	chr3L	9366264	9366333	9366264..9366333	CG4456-RA,CG4456-RB,CG4456-RC,CG4456-RD,CG4460-RA,	FBgn0001228,FBgn0001223,	Hsp67Bb,Hsp22,	2	.
CG2064-RA	ACGCTGCTTTGGATCCGGAGCTTAAGAACATCTCTGGCCTGTACTTCAGTGACTGCAAACCAAAGCCTG	69	+	chr2R	3554576	3554645	3554576..3554645	CG2064-RA,	FBgn0033205,	CG2064,	1	.
CG6322-RA	CAGCCGGTCTATACCATTCCTGCGCACACCAATCTGATTTCGGACGTGAAGTACCAGCAGGAGTGC	66	-	chr3L	17505408	17505474	17505408..17505474	CG6322-RA,	FBgn0036733,	U4-U6-60K,	1	.
CG40390-RA	CCAACGCAAAGGATTACATTAAATACTGGAGTAAACTACGCGGGGCCATATCATATAAGGTGCTC	65	.	.	.	.	.				0	no match
CG9570-RA	TGCCTTGCTCCCCGTGCTAGGCTTGCTCTCAACTTCCCAAAACCAATACGAATGCCAAAATGCCAAAAA	69	+	chrX	19946447	19946516	19946447..19946516	CG9570-RA,	FBgn0031085,	CG9570,	1	.
CG11592-RA	GGCGATCCTTTTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTGTGAGAGCGA	69	-	chr2L	288626	288695	288626..288695	CG11592-RA,	FBgn0025686,	CG11592,	1	.
CG6126-RA	TGTCGGGAGCCCTTACTCCGCTCATTACATTGCTGGACTCATTTGATCCGAAGATACCGGCCGTG	65	-	chr3R	12024145	12024210	12024145..12024210	CG6126-RA,	FBgn0038407,	CG6126,	1	.
CG9140-RA	GGCGGCTCTTCCACCCCCATCATACCCAAAAATGTCTGCGACGATGTTATCATGGACTTCGATGGCCTA	69	-	chr2L	6061353	6061422	6061353..6061422	CG9140-RA,	FBgn0031771,	CG9140,	1	.
CG15351-RA	ACACACCGCACAGAAACACGTATGCAATGCCTCAGAATTATGGGCAGCAGAACTACAAGCCGCAGAGTT	69	+	chrX	8371925	8371994	8371925..8371994	CG15351-RA,	FBgn0014466,	Cp7Fc,	1	.
CG15434-RA	CCTGAACATTTCAAAATCGCAAAAGTGGTGCCAAAATGGGTATTACTCTGTTCCGATTGGCCAGT	65	+	chr2L	4454693	4454758	4454693..4454758	CG15434-RA,	FBgn0040705,	CG15434,	1	.
CG9598-RA	TGCCAAGGATGGACGTCTAAAGAAGGGTGATCGAATCCTTGCCGTCAATGGAATGAGCATGCGCG	65	-	chr3L	14407704	14407769	14407704..14407769	CG42230-RC,CG42230-RE,CG42230-RF,CG42230-RG,CG42230-RH,CG42230-RJ,CG42230-RI,CG42230-RK,	FBgn0087007,	bbg,	1	.
CG31693-RA	GGCTCGGGGACAGAACGGTTGGATTTCTTAGGAGTTTGGAACCACAGAACCAGATTGCGGTAACCACC	68	+	chr2L	22016880	22016948	22016880..22016948	CG31693-RA,CG31693-RB,	FBgn0051693,	CG31693,	1	.
CG1637-RB	TCAAGGGCAAAATACCCGAATGGAGCGCTTTTCACAGCCAGGACTATGGTTACACACGGCTCAAGG	66	-	chrX	10768616	10768682	10768616..10768682	CG1637-RB,	FBgn0030245,	CG1637,	1	.
CG31350-RA	TACGAAAATGCAACAATCAACTGCAAGCAGAGCACGAATTTTCCAATAAATCCTCGCTGATCCGACGCG	69	-	chr3R	8341240	8341309	8341240..8341309				0	no match
CG1625-RA	GCGCAAGGATTATTGTGTTAAATAGACAATTACTCGAAATAGGTGTATGGGACCTCCAAGCTAAATATT	69	-	chr2R	5710625	5710694	5710625..5710694	CG1625-RA,CG1625-RB,	FBgn0033447,	dila,	1	.
CG10477-RA	ACCTTTGGGTCATCTGTGGTCACCAGTGGAGTTATCTGCGTGGAGTCCATCAACAAGAAGTCGACCTGT	69	-	chr3L	6026993	6027062	6026993..6027062	CG10477-RA,	FBgn0035661,	CG10477,	1	.
CG6064-RA	AGCCAGCAAGTCATTTTTGTCGTTAACACAACTGATGGAATTTTCGTTTTTAACACAGATGAGGAAGTG	69	-	chr3L	17654978	17655047	17654978..17655047	CG6064-RA,	FBgn0036746,	TORC,	1	.
CG9472-RA	GCAGTTCACCAAGGCGTTCTTCCTGAAGGTCTGGTACGATCCTCGACAGTTGAAGACCCTGTGGG	65	-	chr3L	19478350	19478415	19478350..19478415	CG9472-RA,	FBgn0036874,	CG9472,	1	.
CG15504-RA	ATCTCAGTCTCAAGAAGGAGGACAGCCAGTCGCCGCCCAACACGCCCGCCGAGAATCTTCATCTG	65	+	chr3R	25521475	25521540	25521475..25521540	CG15504-RA,	FBgn0039683,	dmrt99B,	1	.
CG33224-RA	TGTGGACGCCAGGAGTAGTCCGCAACAAATGGAAAGGGATGAGGATCTGCAAATCGCTGATGATCAGGT	69	+	chrX	8943761	8943830	8943761..8943830	CG42388-RE,CG42388-RG,	FBgn0259734,	CG42388,	1	.
CG11815-RA	GCTGCCCTACAAGAACCCAACTTACTTTGGCTATCATCGATTCTCATTTATGGAACTCACGGTCACGGC	69	-	chr3L	1970819	1970888	1970819..1970888	CG11815-RA,	FBgn0035299,	CG11815,	1	.
CG9354-RB	ACTTTTAAAATAAATTGGTTTTTTCCAACTGGATTTACTGTTTGTATTTTTAGTTTGACAGTCCA	65	-	chr3R	5226057	5226122	5226057..5226122	CG9354-RB,CG9354-RA,	FBgn0037686,	RpL34b,	1	.
CG11371-RB	AGCGAGGCAATCATGAAGAACCTGTGAAGCAACTTGCCGATTCCACAACCAAGCTAAGTGCAGCAGAAT	69	+	chr2L	70383	70452	70383..70452	CG11371-RB,CG11371-RC,CG11371-RD,CG11371-RE,CG11371-RF,	FBgn0067779,	dbr,	1	.
CG15411-RA	CCCACAGCCTCTTCCATCGTCCTTCGTCCACGCAGGGCAAGCACAAGCGCACCGCCAGCCTAAAT	65	-	chr2L	3372789	3372854	3372789..3372854	CG34394-RD,CG34394-RF,	FBgn0085423,	CG34394,	1	.
CG8651-RA	TTGTTTGCCTTGATTGAAGCTCAAGCGTAATCATAATTTGTAACGCCTATCTTTAGTTCGGCTCCCTTG	69	-	chr3R	10089345	10089414	10089345..10089414	CG8651-RD,CG8651-RC,CG8651-RA,CG8651-RB,	FBgn0003862,	trx,	1	.
CG3925-RA	TGTCCTTCTGGTTGGTGCGTAACCTTCACCTGACCGAGAAGATGATGCGGCTTACCTTCCTCACC	65	+	chr3R	5876448	5876513	5876448..5876513	CG3925-RA,	FBgn0037780,	CG3925,	1	.
CG15824-RA	GGACCGACGCCTAATCGAGGAATACTACAACAGCCTGAACCGTTCCGTTTATCCAGACCACAAGCACCA	69	-	chr2L	878527	878596	878527..878596	CG15824-RA,	FBgn0031292,	CG15824,	1	.
CG9852-RA	CGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTT	69	-	chr3R	9950283	9950352	9950283..9950352	CG9852-RA,	FBgn0010340,	140up,	1	.
CG9791-RA	TGGCCATTCAAGCTACCCAAGACGATATTGGACCTGGTCCATCTTGAGGCCGTCTTTGACGTGATGGAT	69	+	chr3R	139423	139492	139423..139492	CG9791-RC,	FBgn0037232,	CG9791,	1	.
CG3078-RA	GCGCTGGTTCCATCTGAATACTGAACAAAGCTGGTCGCAAACGAATTAAACCGGTGGGACAGGAAGCCA	69	-	chrX	2148528	2148597	2148528..2148597	CG3078-RA,	FBgn0023524,	CG3078,	1	.
CG41050-RA	TCCACTTGACAGCGAACATTGCACCACCAACGGTTGAAGTCCCGAAAGCGGCAAATCATATAGCCTACA	69	-	chr3LHet	2147651	2147720	2147651..2147720				0	no match
CG4307-RB	CCGCGGGTAGTTTATGTTTAATAAGCCGAAAAACTTACCAAGTGCTCTTGTTTGCTTATCCCGCAGAG	68	+	chr3R	11091582	11091650	11091582..11091650	CG4307-RB,	FBgn0016691,	Oscp,	1	.
CG40275-RA	TGGTGCTACGGCAGTTTTATGTTATTTTCTGGGGCTACGGAATATAGCTGGTGTTGCCGAGCGATCACA	69	.	.	.	.	.				0	no match
CG8620-RA	TCCGCAGCAGTTATATCCAGTTCAGAGAAACAGTAGTTAATCAGTAATTAAAGTGTTGAGTGAATTTCT	69	+	chr3L	7151248	7151317	7151248..7151317	CG8620-RA,CG8620-RB,	FBgn0040837,	CG8620,	1	.
CG12177-RA	GGTCCGGAGTTTGGGAATAACTTTCGTGATCTGTTCATTATGGGCGGCAACTATCAGGGCGTGGG	65	-	chrX	13573023	13573088	13573023..13573088	CG12177-RA,	FBgn0030510,	CG12177,	1	.
CG2185-RA	CTGGACCGCACCGACGTGGATCAGAAGATGTCCATACGGTTTCTCAACTAGGCTAGCTGGATGCG	65	-	chr3R	1478959	1479024	1478959..1479024	CG2185-RA,	FBgn0037358,	elm,	1	.
CG13188-RB	AGCCGGACTACGATGATATCGATTTGGAGACCCGTATCAAACTGTCTCGCGGTAAATCTGACAAGGGCA	69	+	chr2R	7851504	7851573	7851504..7851573	CG13188-RA,CG13188-RB,	FBgn0033668,	CG13188,	1	.
CG30192-RA	ACTTTGAAGTGTGATTAAAATTTAAATCCAAATTGTGAGTTTTCATAGAAATTTCTACTTCACCA	65	+	chr2R	19026133	19026198	19026133..19026198	CG30192-RA,	FBgn0050192,	CG30192,	1	.
CG9000-RA	GGCGCGGAAATATGGTCTGGACCAGGAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCCCT	69	-	chr2R	12888980	12889049	12888980..12889049	CG9000-RA,	FBgn0034176,	ste24a,	1	.
CG9610-RA	TCAGCGAGGGCATATGCGACAAAACGAATGTACCCAGTGTGAGCTCCATATCGAGAATCCTGCGCAACA	69	-	chr3R	4146241	4146310	4146241..4146310	CG9610-RC,	FBgn0003129,	Poxm,	1	.
CG2859-RA	AGCATTCCAGCGGACACAGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTG	65	+	chr2L	2768406	2768471	2768406..2768471	CG2859-RA,	FBgn0028398,	Taf10,	1	.
CG9091-RA	TAGGAGGCTCTGTGTGTCCCAAGATGTATATCCCACACCGGGCTATATGGACGGAGATAGCAGCTGCTC	69	-	chrX	15032737	15032806	15032737..15032806	CG9091-RA,	FBgn0030616,	RpL37a,	1	.
CG31666-RD	ACGGACAGACAAGCGAACACACGAAAAACAGATGGCGAATTTGATGACCACCAACTTTTTGCAGGCATT	69	+	chr2L	1697162	1697231	1697162..1697231	CG31666-RH,CG31666-RD,CG31666-RA,CG31666-RE,CG31666-RF,CG31666-RG,	FBgn0086758,	chinmo,	1	.
CG6410-RA	CCCGTGGACCCCAACGCTGTGCTAAGGGTGCCCATTATTGGTTACGAGGTTATGGAGGAACGTGC	65	-	chr2R	13613522	13613587	13613522..13613587	CG6410-RA,	FBgn0034265,	Snx16,	1	.
CG9614-RG	ACGACGATCTAACGCTGGAAAGACGTGGTCTCCATACCAGAACCGTTCGGCAAATGGACAAAAAGCAGA	69	-	chr3L	19297823	19297892	19297823..19297892	CG9614-RG,	FBgn0003089,	pip,	1	.
CG9865-RA	GGCTGGGGACACACCCTTCGCCAGGCATACTTACCGATATAGCCCAATCATGGCATATCTGCAGACTTT	69	-	chr2R	17556221	17556290	17556221..17556290	CG9865-RA,CG9865-RB,CG42379-RA,CG42379-RB,CG42380-RA,CG42380-RB,CG42381-RA,	FBgn0034649,FBgn0259725,FBgn0259726,FBgn0259727,	CG9865,CG42379,CG42380,CG42381,	4	.
CG1698-RA	GGCGGTCGTCACTCCTCTGCTAATGCTCACCATTCTCATCTACACCTTGGTTCTGTACGAGCCCCTC	67	+	chr2R	5685056	5685123	5685056..5685123	CG1698-RA,	FBgn0033443,	CG1698,	1	.
CG14212-RA	AGGAGCTCCTGATGCCCAAAATCGTGGCGTAGAGTTTGTGGTAAGGCCAGGTTATTAATGCTGCTGTTT	69	+	chrX	19520527	19520596	19520527..19520596	CG14212-RA,	FBgn0031045,	CG14212,	1	.
CG15121-RA	CACCACGGCGTGGATTGTCTTATCCGCGGGAATACCCATTAGTTCGCTGGCTTTCTGTTTGGAGC	65	+	chr2R	15396819	15396884	15396819..15396884	CG15121-RA,	FBgn0034456,	Ir56b,	1	.
CG4829-RB	TTTGGCCGATGATCTGGAGTCGTACGAGGCCGATGTAATCAACTCCATCACCATGGACTTGGGTGACG	68	+	chrX	16719128	16719196	16719128..16719196	CG4829-RB,CG4829-RA,CG4829-RC,CG4829-RD,CG4829-RE,	FBgn0030796,	CG4829,	1	.
CG11761-RA	AGTCTGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCATACTGCAGTTGGCGTCGGAG	65	-	chr2R	6366853	6366918	6366853..6366918	CG11761-RA,	FBgn0033528,	trsn,	1	.
CG8665-RA	GGCGCAAAGCTGGTGTACGGAGGATGTCGAGTCCCAAACCTCAAGGGATATTTTTTCACTCCCACAGTG	69	+	chr2L	21376829	21376898	21376829..21376898	CG8665-RA,	FBgn0032945,	CG8665,	1	.
CG1157-RA	TGCACATTTCCCCATCCACATGTCTCTTGGCGGTCGTACATGTCACTCAGGTTCATCGAAAGCAACGAA	69	+	chr3R	2129223	2129292	2129223..2129292	CG1157-RA,	FBgn0037424,	Osi15,	1	.
CG11913-RA	CCGGGCCAAGTACATACGCACCATGTTTTCGGAGATAATGAGGCTGACGAATCACACGATGGCCATTGG	69	+	chr3R	21184753	21184822	21184753..21184822	CG11913-RB,	FBgn0039331,	CG11913,	1	.
CG3848-RD	CTGCCCGTACAGCAAGCAGTTCGTGCATTCGAAGAGCTCCCAGTACAAAAAGATGAAGCAGGAGTGGC	68	-	chrX	1776796	1776864	1776796..1776864	CG3848-RC,CG3848-RD,	FBgn0023518,	trr,	1	.
CG3305-RA	CGACACTGGTTTCTCAGTTGGACACGATTGCGATAGCTCGGAAACTTCGGATGTGGTTCCCATTGCCG	68	+	chr2L	21576420	21576488	21576420..21576488	CG3305-RA,CG3305-RB,CG3305-RC,	FBgn0032949,	Lamp1,	1	.
CG31337-RA	GCGGACTTTGATCTGCTAAATCAGTTGGTAGCTTTTTGTTTGGGCCCATAACCGAAATGTTATGGCCGC	69	-	chr3R	9369928	9369997	9369928..9369997	CG31337-RA,	FBgn0051337,	CG31337,	1	.
CG14196-RA	GGTTCTCTGCTAATCTCCGGGAGTCTCATACTAACCGCCTTCTGTGAAACCTTTCTCAGCTACATGGTG	69	-	chrX	19131950	19132019	19131950..19132019	CG14196-RA,	FBgn0031002,	CG14196,	1	.
CG15465-RA	AGCTCAAGATCGCTACTCTCCAAGTTCTCATCGACCAATTCGGATAATCGCATACATCCGGAGGCTGGA	69	+	chrX	5069782	5069851	5069782..5069851	CG15465-RA,	FBgn0029746,	CG15465,	1	.
CG33330-RA	GCCATCTGGTTTGGTACTCCGCCCAGGGATAAGAAGGACGAGAAACTGTTTGAGGTGCATCATGTGCAG	69	+	chr3R	10620592	10620661	10620592..10620661	CG43162-RA,CG43162-RD,CG43162-RE,CG43162-RG,	FBgn0262718,	CG43162,	1	.
CG9032-RB	ACCAGAAGCCTTTTAATTGGGATCAGTGATAGGTTTCTTGCTATAATTTTGTCAACGCATATTTGTATA	69	-	chrX	15741683	15741752	15741683..15741752	CG9032-RA,CG9032-RB,	FBgn0014391,	sun,	1	.
CG9553-RA	GCCGTGCGGTAAAGCAACAGCGATCCATATCCAGATCCATATATATCAGTTCAACTTAATCCGCACCCA	69	-	chr2L	5979538	5979607	5979538..5979607	CG9553-RA,CG9553-RC,CG9553-RB,CG9553-RD,	FBgn0000308,	chic,	1	.
CG32115-RA	GGGCATGTACTTCGAGGAAATTGGAGCAGTCTCAACTTATACGCGGTCCATTCCAATCTTTCAGCTCCT	69	-	chr3L	12905680	12905749	12905680..12905749	CG32115-RA,	FBgn0052115,	CG32115,	1	.
CG31085-RA	TGTCGGGGGAAATGATTATGGAACAATTCTGTCCAGTGCACACCGGATGCAATCAGACGATGCTGAGCT	69	+	chr3R	22182044	22182113	22182044..22182113	CG33970-RA,CG33970-RB,	FBgn0053970,	CG33970,	1	.
CG32136-RB	CCTACTCGCCATTATCATGAGCTGCACCGGACTTGCTTCGCAACGGGCTAGGCTTAAGAAACCTGTTC	68	+	chr3L	13837830	13837898	13837830..13837898	CG32136-RA,	FBgn0043550,	Tsp68C,	1	.
CG9196-RA	AAGGCCGACGATACCCTACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACAGCTGGA	65	+	chr2R	20646434	20646499	20646434..20646499	CG9196-RA,	FBgn0035056,	spz6,	1	.
CG33283-RA	GCCGGAGATCTTGAAAATAAATGTTGGGGAAAGAATCGCGAATCCAACAAACACGGATGCACTGGTACC	69	+	chr3L	20972137	20972206	20972137..20972206	CR33283-RB,	FBgn0053283,	CR33283,	1	.
CG6020-RA	TAGTTGGAATTGTTTAAGGCGATGCGTCAATAAAGAGAAGTCGAAAGACCCAATGACAACGAAGG	65	+	chr3L	20490123	20490188	20490123..20490188	CG6020-RA,	FBgn0037001,	CG6020,	1	.
CG6121-RA	GCCTGGAGAGGCACCTGTCCAAGTGCAATCTTAGGCATCCACCGGGAAACGAGATCTATCGCAAACATA	69	-	chrX	4009788	4009857	4009788..4009857	CG6121-RA,	FBgn0026080,	Tip60,	1	.
CG5976-RA	ACCTCGAGTTGTGGGCACAACAAATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCT	69	+	chr3L	20468765	20468834	20468765..20468834	CG5976-RB,CG5976-RA,	FBgn0036999,	isoQC,	1	.
CG30028-RA	GTGTCACCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACACCATGGTCAAC	65	.	.	.	.	.	CG12351-RA,CG30028-RA,CG30031-RA,CG30025-RA,	FBgn0010358,FBgn0010359,FBgn0050031,FBgn0050025,	deltaTry,gammaTry,CG30031,CG30025,	4	.
CG11967-RA	TCAACACACTGCAGCAAATGTCCAACATTGCCTCGTACGGCTTCCTCAAGGCTCGCCTAGAATCC	65	+	chr3R	4808153	4808218	4808153..4808218	CG11967-RA,	FBgn0037646,	CAHbeta,	1	.
CG13016-RA	AGGCCTTGTTCAGCTATCCTTGGGTTTCTGCGCCATGAAGCTATACCAGAAGCACACATACATACTCCT	69	+	chr2R	10045858	10045927	10045858..10045927	CG13016-RA,	FBgn0033899,	CG13016,	1	.
CG14717-RA	CTACATGGGCGAAGTCTTGCTCATAGCCGGTTCCCAGTCGGAATTCGTGACCACGACCAGTATTGC	66	+	chr3R	7523092	7523158	7523092..7523158	CG14717-RA,	FBgn0037938,	CG14717,	1	.
CG6134-RA	CCTGCGCCAAGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAATGTGGACGACTATCCGGACCTTT	69	-	chr3R	22892043	22892112	22892043..22892112	CG6134-RA,CG6134-RB,CG6134-RC,CG6134-RD,CG6134-RG,CG6134-RH,CG6134-RI,CG6134-RJ,CG6134-RK,CG6134-RL,	FBgn0003495,	spz,	1	.
CG17493-RA	GCTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGACATTGACAAGGACTGCAGT	69	+	chr2L	22443494	22443563	22443494..22443563	CG17493-RA,	FBgn0040010,	CG17493,	1	.
CG31301-RA	ATGTGAGATCGGACGATATACGTGACATGCAGTTTGAGCCCACGTTTTCGAAGGAAGAAAGAACCACGC	69	+	chr3R	11173271	11173340	11173271..11173340	CG31301-RA,	FBgn0051301,	CG31301,	1	.
CG4053-RA	GGTGCTCCGGAAAGTAGCTATCCCACAGTGCAATATCTGCAGACCCTCAACCTGACCATCATCGCACAC	69	-	chr3R	12957332	12957401	12957332..12957401	CG4053-RB,	FBgn0038482,	CG4053,	1	.
CG7402-RA	CCCCTGGGTGAGAGCTACGAACAACATGTCTTGGCATCGGATGTTCAAAGCCTACTAGGAAATCGGGGA	69	+	chr3L	17883986	17884055	17883986..17884055	CG7402-RA,	FBgn0036768,	CG7402,	1	.
CG14153-RA	TGCCCCTGATGATCGATGCAGTTTGTGGGAGAGCTCAGTATGCATCACCTTATGGCAGTGCTTATGCAA	69	+	chr3L	10636769	10636838	10636769..10636838	CG14153-RA,	FBgn0036094,	CG14153,	1	.
CG14131-RA	GCCCAGGTCTACCAAATCAGCCAGATCCCTCAATGTTCGTGGTAGTACTTCTCCCCTTGCGTGCTATCA	69	+	chr3L	11772962	11773031	11772962..11773031	CG14131-RA,	FBgn0036205,	CG14131,	1	.
CG3322-RA	ACAAGAGGATGGATGATGGCCACATCGAGAATCAACTGCCAACTGTGCTTCACCAGTTTCAAGCCAGCA	69	+	chr3L	9616758	9616827	9616758..9616827	CG3322-RA,	FBgn0002528,	LanB2,	1	.
CG14785-RA	ACTGCGAGCAGTTCGTTTACCCCACCTACGACGCGTTCAAAGAATACCTGGCCAGGATTATCTGCT	66	-	chrX	1349528	1349594	1349528..1349594	CG14785-RA,	FBgn0027795,	CG14785,	1	.
CG31017-RA	CACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAGAGGATGCGGGATATCACTGGCCTACAAATCC	69	+	chr3R	26431185	26431254	26431185..26431254	CG31017-RA,	FBgn0051017,	PH4alphaNE3,	1	.
CG14174-RA	TGCCAGGAAGGAAACACCCGTTCAAGATACAAAGAAACCCACATTCAATGAAAACGTTCTGGCCAC	66	+	chr3L	9713282	9713348	9713282..9713348	CG14174-RA,	FBgn0036036,	CG14174,	1	.
CG10393-RA	CCCTTGAGCCTGCAAACGTAAACATGTTGACCAACAACGAGCTAATGGAGCAGTTCTACTTCCCCGACG	69	-	chr2L	18596860	18596929	18596860..18596929	CG10393-RA,	FBgn0003270,	amos,	1	.
CG15088-RA	GTCACCGGCACAGCTACGTGAGATCCTTCATGAGGTGCCCAACATAGACAACGGACTGAGTCTGC	65	-	chr2R	14616999	14617271	14616999..14617049,14617256..14617271				0	no match
CG1500-RA	GATCGGCGGAGTATCACTGCATACCGAACTACAATCGGATTGGCCAGTATTTGCGCAAGTGCACC	65	-	chrX	11888209	11888274	11888209..11888274	CG1500-RA,CG1500-RB,	FBgn0001083,	fw,	1	.
CG2540-RA	TAGTCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGTATGAGCGCTGCA	65	+	chrX	12524422	12524487	12524422..12524487	CG2540-RA,	FBgn0030411,	CG2540,	1	.
CG4099-RA	GTTCTGGCCAACGTCGTTAATCGCTGGATAATACCAATCACTGGATCAAAGACCAGCAGCGAAAAGGCT	69	+	chr2L	4123683	4123752	4123683..4123752	CG4099-RA,	FBgn0014033,	Sr-CI,	1	.
CG15398-RA	TCCGGTAGTGACCCGTTATGACACCTCGAAGTATCCGTTCCTGGTGTACAAGATGATGGGAACAACGGT	69	-	chr2L	2695595	2695664	2695595..2695664	CG15398-RB,	FBgn0031446,	CG15398,	1	.
CG2016-RB	AGTGGATCAACCTGAATTAGAATGTAGTTTCTCTAGTCTAAGACCTTATTTATTGCACACAGTTCCGCG	69	-	chr3R	782741	782810	782741..782810	CG2016-RB,CG2016-RC,CG2016-RD,	FBgn0250839,	CG2016,	1	.
CG15526-RA	TTCGAGTGCCAGAGCAACTGCACGACATGACCCGCATATCCATTGAGCTCATCGGTCACTACCAG	65	+	chr3R	25882113	25882178	25882113..25882178	CG15526-RA,	FBgn0039744,	CG15526,	1	.
CG11471-RA	ATGCCAGCATAATCAAGACGGCCATTAAGTCGGAGTTTGCTCCCTATTCATCTGAGCAGGCGTCCAAGA	69	+	chr3L	22285294	22285363	22285294..22285363	CG11471-RA,CG11471-RC,CG11471-RD,	FBgn0027086,	Aats-ile,	1	.
CG17330-RA	CCTGAGGAGCTTAGCGGCAGATTTGACCATGTCACCTCGTTCTACTGCCTCCATTGGGTGCAAAATCTG	69	+	chr2L	16366215	16366284	16366215..16366284	CG17330-RA,	FBgn0028841,	jhamt,	1	.
CG12052-RX	TCTGCTCCCGTGTCTGTCGATCCCAGGCCTTTCTTAACGAACATATGCGCAAGGAGCACTCTGTG	65	-	chr2R	6375494	6375559	6375494..6375559	CG12052-RX,	FBgn0005630,	lola,	1	.
CG9128-RA	CCCATCTCCTTTCGAGACCCATGACGTTAGTGTCGTCTAGCAGAGTCACTGGGAACTACCTCTGCAGCT	69	+	chr3L	1250045	1250114	1250045..1250114	CG9128-RA,CG9128-RB,	FBgn0035195,	Sac1,	1	.
CG15894-RA	CCTTCGCATCTGGAGGAATACTGTACGGGAATCATGACGCCGCAAGAGGCCATACCAGGTGGTTATCAA	69	+	chrX	6220786	6220855	6220786..6220855	CG15894-RA,CG15894-RB,	FBgn0029864,	CG15894,	1	.
CG15352-RA	GTCCACGATGTCGTTTTCCTCGACGATTTCGAACGCAACGTGAAGCCTTTGATTTACCGCCCCGT	65	+	chrX	8802202	8802267	8802202..8802267	CG42667-RD,CG42667-RE,	FBgn0261549,	rdgA,	1	.
CG31509-RA	GGAGTTCCGATTCAGGGAGGTCGAAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGC	69	+	chr3R	16697145	16697214	16697145..16697214	CG31509-RA,	FBgn0028396,	TotA,	1	.
CG8993-RA	TCTTGTCATTATTTTGCAATCAATCGCTGAACTTTTTGCACTGAGAAATTGTAGAAAATAAGCCATGCA	69	+	chr3L	2372217	2372286	2372217..2372286	CG8993-RA,	FBgn0035334,	CG8993,	1	.
CG12278-RA	AGCTCAGCGACTTGTACTACGTACTACAGTGTCCACCAAAGCATGATGAAGGCATTCCCAAGGCGC	66	+	chr3R	16869989	16870055	16869989..16870055	CG12278-RA,	FBgn0038847,	CG12278,	1	.
CG9901-RA	ACTACACGTTCGGTCCCAAAAAGATGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGCCGC	69	-	chrX	16444320	16444389	16444320..16444389	CG9901-RA,CG9901-RB,	FBgn0011742,	Arp14D,	1	.
CG11696-RA	GCACTGGCTATGTGAAGTGCTGCAACAATCGGTACAAGAAGCGGACACTGTACGTCGACCATTTGCACT	69	+	chrX	11468932	11469001	11468932..11469001	CG11696-RA,	FBgn0030314,	CG11696,	1	.
CG9946-RA	ACACGTTTTTCATTTCGAAAAGTCCAAATTGCCCATTTTTTGGCCATAGACCACAGACTTTAACAT	66	-	chrX	16340910	16340976	16340910..16340976	CG9946-RA,	FBgn0261609,	eIF-2alpha,	1	.
CG8001-RA	GGAGGCGTCATAAAGCCCATCCGTCTGTACACACACAGCGAGTCCGTTCACAAGATCATCGTGGTG	66	+	chr3L	1757813	1757879	1757813..1757879	CG8001-RA,CG8001-RB,	FBgn0035268,	CG8001,	1	.
CG31189-RA	CCAGTCGCGGTCCTATCTGGATGGACTTTCGAATGCGGGACAATGTGAACAAGGGCTTCAATAATGCCA	69	-	chr3R	16871184	16871253	16871184..16871253	CG31189-RB,	FBgn0051189,	CG31189,	1	.
CG33041-RA	CACACGGGACTCACCCTGCGAATCTTCCAGTTTCGAGGACCAAATCCATCCTACACATATAAGGCTCGA	69	+	chr2R	16357636	16357705	16357636..16357705				0	no match
CG17716-RA	ATAAATTGGAGGATGATAAGCCCCCCTACAACAGAATCAAAAACTAACTATTAAGCGACTCCGTTCACT	69	+	chr2R	9636420	9636489	9636420..9636489	CG17716-RA,	FBgn0000633,	fas,	1	.
CG9506-RA	CGTGGATCAGGGCTTTGAGACATGCTCGAACGATCCGATGGACAACAGTCCGATACGCCGATCTTC	66	+	chr2L	6375798	6375864	6375798..6375864	CG9506-RB,	FBgn0043854,	slam,	1	.
CG17108-RA	CGGCGGCTATCATGGCTAGTCTGGATTACCCAAAGCCCAATATACCTGTAATTCTCCCAGTGGCTTAAA	69	-	chr2L	10692981	10693050	10692981..10693050	CG17108-RA,	FBgn0032285,	CG17108,	1	.
CG11100-RB	CGGAGGAGAAGAGCGCTAAGTGTACGGGTGTAATTATAGTAGCCAAAAAAAAGTACATAATGGAATGAT	69	+	chr3L	22944494	22944563	22944494..22944563	CG11100-RB,CG11100-RC,	FBgn0037207,	Mes2,	1	.
CG31156-RA	CGGCATCGCTGAATGACGTTGTGTCCGAGTGTGTCAGTTATGTTGGCGTTGATCTCAACACAGCCAGTC	69	-	chr3R	18436744	18436813	18436744..18436813	CG31156-RA,	FBgn0051156,	CG31156,	1	.
CG7990-RB	GCGGCTTCTGGTGCTCACGGGGTCAGAAGGTCAGTGGTATAAGCAAATGTAGCCAAGTAAACAATTGTT	69	-	chrX	19091101	19091170	19091101..19091170	CG7990-RA,CG7990-RC,	FBgn0030997,	CG7990,	1	.
CG33145-RB	GCGCTTGTTCGAGGCTTCGCTTAATACGACGCTGGTCTATCTGGAGGACGTGTACATCACTGGGTTGTG	69	-	chr2R	7868981	7869050	7868981..7869050	CG33145-RA,CG33145-RB,	FBgn0053145,	CG33145,	1	.
CG10206-RA	CGAGGAGGATGTGCTGAACATTCAGTGTCTGTGCGACGAGATCATATCGATCAACGATTACCGCACCCA	69	-	chr2L	6917799	6917868	6917799..6917868	CG10206-RA,	FBgn0026196,	nop5,	1	.
CG16853-RA	TGCACAATGTATTGGAAGTAATCTGTCGCTTCTCACGCGAGATTCCTGATGCAATGGAGGGCCGG	65	+	chr2L	13542994	13543059	13542994..13543059	CG16853-RA,	FBgn0028941,	CG16853,	1	.
CG7693-RA	TGAAGAATCGTGTACTTATTCGTTTCGTTTGTCTTTAAGTAGCTCTGTACATACACCCCACACGTATAT	69	+	chr3R	14414646	14414715	14414646..14414715	CG7693-RA,CG7693-RB,CG7693-RC,CG7693-RE,CG7693-RF,	FBgn0023083,	fray,	1	.
CG7112-RA	CGCCTCCCAATGGTTCCTAACCTTATATACAGCGCGATTCCCATTGTGTTTTGTGTTCCACGTGCTGGA	69	+	chr3L	8343432	8343501	8343432..8343501	CG7112-RA,CG7112-RB,	FBgn0035879,	CG7112,	1	.
CG17637-RA	AAGGAAAAGAAAGAGAACTTAAATGGAGAAGGAAAGGTGAATGTTGAAGTGAACAAACCCACCTCACAG	69	+	chr3L	20497969	20498038	20497969..20498038	CG17637-RA,	FBgn0037004,	CG17637,	1	.
CG7104-RA	CGCCTACGATCCTGATAACGATTGCAAGGGCATTTTTATGGATTGGTTCCTGTTTCCTTCGTGCTGTGT	69	-	chr2L	7873823	7873892	7873823..7873892	CG7104-RA,	FBgn0031959,	spz3,	1	.
CG6186-RA	GCAGTGATCACATTTTATACTACTAGATCCCACTATCTGCATCAATAAAATTTAATTCGAATATAAACA	69	+	chrX	18284307	18284376	18284307..18284376	CG6186-RA,	FBgn0022355,	Tsf1,	1	.
CG10278-RA	CTGTCGATGAAGAAGGAGGGCATCCAGAAGCGCAAACGGAAGCCTAAGAACAACGGAGGAGCACC	65	+	chr3R	11843840	11843905	11843840..11843905	CG10278-RA,CG10278-RB,CG10278-RC,	FBgn0038391,	GATAe,	1	.
CG16975-RA	AGTCTCACAGCGCGTTATTTTATACCGATTAAATTGTAAACCGTAGACCTTAGGCGTACGCTCATGTTA	69	-	chr2L	13170161	13170230	13170161..13170230	CG16975-RA,CG16975-RB,CG16975-RC,	FBgn0032475,	Sfmbt,	1	.
CG16791-RA	GAGTACTCCTGCCACGGATCTTGGAGCGAGAACAGCACCTTCTACATCATAGCGCGCCACAAGGG	65	-	chr3R	17147077	17147142	17147077..17147142	CG16791-RA,	FBgn0038881,	CG16791,	1	.
CG31219-RA	GGCATTCCTGGAATTTACACCAGAACCAGTGCATTCCTGCCATGGATAAAGGCGGTATTGAGGCCCTGA	69	+	chr3R	15477994	15478063	15477994..15478063	CG31219-RA,CG31219-RB,	FBgn0051219,	CG31219,	1	.
CG9295-RB	CGACCCGAGAATTCCGGTCCGGTTCTCTTCCCAAAGAGCCTAGAGGACGAGTTTGAGGACTTCGAG	66	+	chr3L	19520043	19520109	19520043..19520109	CG9295-RC,	FBgn0036880,	Cpr76Bc,	1	.
CG32542-RA	TGCCAGGATTTCTTTTGCTTCGACCTACATATATGTGTCCGTCTTTTCCGACTTTATAACGACCGAGCA	69	+	chrX	18774111	18774180	18774111..18774180	CG34401-RA,	FBgn0085430,	CG34401,	1	.
CG32611-RB	TGATCACGCATTTGTCGGTACATACAGGTGATCGACCATTTAAATGTGAGTTTTGTGGCAAAGCA	65	-	chrX	13764398	13764463	13764398..13764463	CG34346-RG,CG34346-RF,	FBgn0263115,	mamo,	1	.
CG9480-RA	AAGCTCAAGTCCGAGTCGGGTACCAAGAAGATCGTTCCTTCCGAAAATCCCGGAGATGTGACCACCG	67	+	chr2R	17099679	17099746	17099679..17099746	CG9480-RA,	FBgn0034603,	Glycogenin,	1	.
CG10371-RB	TACGAGGAAGATTTCCGCCCGTGTGAATCACCAACTTTTGTCTCGTCCAATCCAAGTCAGCCACT	65	+	chr3R	19584162	19584227	19584162..19584227	CG10371-RB,	FBgn0039111,	Plip,	1	.
CG7828-RA	AGCCAACAGACCGAACTTCTTCGACAGCTTCGATTTAGTGATTGCCTCCAATCTCAATGAGCAGACTTT	69	+	chr3L	11092250	11092319	11092250..11092319	CG7828-RA,	FBgn0261112,	APP-BP1,	1	.
CG10466-RA	GGACAACCTGAATGGCATCAAGATCCTCGATAGGACACTAAGGGTCGATCACGTGGCCGACTACAAGC	68	+	chr2L	19792559	19792627	19792559..19792627	CG10466-RA,	FBgn0032822,	CG10466,	1	.
CG5935-RB	GCAAAGTCAGGACGTTGTACGCCGATGCAGAAAGAAGTTGGGCATGGTTCGCGAAATGTAACTCCAAGT	69	+	chr2R	12747447	12747516	12747447..12747516	CG5935-RB,CG5935-RA,CG5935-RC,	FBgn0026533,	Dek,	1	.
CG8476-RA	CCGCAAGAATCCACGTTTACCGGCAGACGAGTCTATACGGTTTGGTCACAGTATCAGTCCGCTGTCC	67	-	chr3R	9045791	9045858	9045791..9045858	CG8476-RA,	FBgn0038127,	CG8476,	1	.
CG14684-RA	ATGATGGACAAGAGTGATTTGTGGGACAGTCAGGAGTACTTCAAGGCCAAGTCTGCGCTTGGGGC	65	+	chr3R	6532991	6533056	6532991..6533056	CG14684-RA,	FBgn0037824,	CG14684,	1	.
CG17702-RA	GATTTTTTTGATCGGCCGGATAGGAGTGTCCTCGAGATCCCCGATCGCTCTTACCGATTGGTTTTGAAT	69	-	chr2RHet	553198	554243	553198..553240,554216..554243				0	no match
CG7954-RA	TGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTT	69	+	chr3R	4184380	4184449	4184380..4184449	CG7954-RA,CG7954-RB,CG7954-RC,CG7954-RD,	FBgn0020249,	stck,	1	.
CG8249-RA	GGCCATTGTGGGCTTCATTGTGCTGAGCACTCTAGGTCTTTACACCCTGCCCTTCTTTATGATCTCCGA	69	-	chr2R	11732026	11732095	11732026..11732095	CG8249-RA,	FBgn0034045,	CG8249,	1	.
CG10293-RA	CACATTACATTAATCGTATGCTGTGCCCCTAACATCGCATAATAAACATCATTCATTCATTGCCAGCAT	69	+	chr3R	17904795	17904864	17904795..17904864	CG10293-RA,CG10293-RD,	FBgn0017397,	how,	1	.
CG11122-RA	GCGGAGTATATGCAACATATTTTTCTTTCTTTTAAACATCTAAGCGTTACATTATTTAGGTTTTTTTTA	69	-	chrX	11006501	11006570	11006501..11006570	CG11122-RA,	FBgn0030266,	CG11122,	1	.
CG31764-RB	TGGGCCGAATTCGATCAGGATCAGGATCGAGAGCACGATCGGAATGAGGATCAGGATCATGATTTGGAC	69	-	chr2L	12403784	12403853	12403784..12403853	CG31764-RA,CG31764-RB,CG31764-RD,CG31764-RE,CG31764-RF,	FBgn0043841,	vir-1,	1	.
CG4982-RA	ACCCCAGCATTTATCTGAAGTAGAACAACGAACAAAGAAACCCTTCTCCACAGAAAATCTCATTTTTGG	69	+	chr3L	16294965	16295034	16294965..16295034	CG4982-RA,	FBgn0036598,	CG4982,	1	.
CG4590-RA	GGACGCCTCAAGATGCTGGTCATGGATCTCAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGC	69	+	chrX	6893566	6893635	6893566..6893635	CG4590-RA,CG4590-RB,CG4590-RC,	FBgn0027108,	inx2,	1	.
CG12190-RA	ACGGCGAGTCGATTGCATTTACACGACGCTCTCCAAATCCCATTTTAAAATGCGCTAGACCCTGTAAAT	69	+	chr2R	18559679	18559748	18559679..18559748	CG12190-RA,	FBgn0034763,	RYBP,	1	.
CG2826-RA	GCCTGTGGGCTCTATGGAATCCGTGCAAAGGATGTGTGTCCTCGAATGTCAACGGATAAGGAAGTGTGT	69	+	chr2L	624682	624751	624682..624751	CG2826-RA,	FBgn0040107,	lectin-21Ca,	1	.
CG17042-RA	CTGGAGATGCAGCGAAAGTTGTCAGCCATTGCCGAAATACCGAAAATCCTGTGCTCCACTTTGGC	65	+	chr2R	9151909	9151974	9151909..9151974	CG17042-RA,CG42319-RF,	FBgn0259219,	CG42319,	1	.
CG10537-RC	AACAAAACGTTGGTACGCGCGGTTGCTCGATAGTGGGACCCTTGTTCCAGGAGGTGAGATTCAAG	65	-	chr3L	9144572	9144637	9144572..9144637	CG10537-RA,CG10537-RC,	FBgn0004244,	Rdl,	1	.
CG18649-RA	TTTGACAATACAATGCGTGCCTATTTGCTGCTTGCCCTGTTTGGATGTGTGCTTTTGGCCACAGT	65	-	chr3L	15047150	15047215	15047150..15047215	CG18649-RA,	FBgn0036469,	CG18649,	1	.
CG13366-RA	GCGCAACGCCTTGTTGAAGTGGTGCCAAAACAAAACAGTGGGCTACCGTAACATCGACATCACCAACTT	69	-	chrX	505600	505669	505600..505669	CG13366-RA,CG13366-RB,	FBgn0025633,	CG13366,	1	.
CG13344-RA	CCCATAGCACAAAGAAACGTATGAACCCAGCTTGTACTTGAGTTAGTTGGATGATTAAAGTTGAAGCGG	69	+	chr2R	9751334	9751403	9751334..9751403	CG13344-RA,	FBgn0033884,	CG13344,	1	.
CG1915-RC	CTCGGCTACCACATTGCTATACGGGACATGAAGAAGACCATGTGGATCGAGGTGGGTCGTGTGCC	65	-	chr3L	2040909	2040974	2040909..2040974	CG1915-RC,	FBgn0086906,	sls,	1	.
CG33006-RD	CCCAACCCAGATCAAGAGATTACGCAAGGATAACGTGATTAAAAACAAGTTACTTTAGTTGACCATAAA	69	+	chr2R	13394075	13394144	13394075..13394144	CG43164-RA,CG43164-RB,CG43164-RD,	FBgn0262720,	CG43164,	1	.
CG15119-RA	CCTGTTTGAGCGAAGTTTGGACCTGTCCAAATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGC	69	-	chr2R	15179171	15179240	15179171..15179240	CG15119-RA,	FBgn0034430,	mip40,	1	.
CG4396-RA	AAGTCTCAGGTAATTTGGTCTTGCCAGCATCGTTGACCGCTCTCAATCCGGCATTGCAGCAAGGT	65	+	chrX	12836871	12837165	12836871..12836889,12837118..12837165	CG4396-RC,CG4396-RA,CG4396-RB,CG4396-RE,CG4396-RF,	FBgn0086675,	fne,	1	.
CG14070-RA	TGTGGGGCTGGAACGATACTCTGCTGTCGATACAATACTTCTCCCTGCTGTTCTGCAAAATTGGCGGAT	69	-	chr2L	10901005	10901074	10901005..10901074	CG14070-RA,	FBgn0032313,	CG14070,	1	.
CG13312-RA	GGGGTGGCAATATGTACACATGTCCCGGTAGCCTCTACTACAACAGTGCCAGCAGAACATGTGTCTCCA	69	-	chr3L	8798992	8799061	8798992..8799061	CG13312-RA,	FBgn0035931,	CG13312,	1	.
CG6766-RA	AGCAGCCTCTGAAACTGGACCAACACCCATCACTGATCTGACGCCCCTTAAGGACTTTATATCGGGCAA	69	-	chr2L	12039400	12039469	12039400..12039469	CG6766-RA,	FBgn0032398,	CG6766,	1	.
CG12348-RD	GACTGGCCTTCTATAGGGATTTCCTTGTTTCTCCTTTCATTTTCCTTCTGGTAATCTACACACCGAAAA	69	-	chrX	17823417	17823486	17823417..17823486	CG12348-RD,CG12348-RB,	FBgn0003380,	Sh,	1	.
CG4593-RA	TTGCAGTTCGTCCTCTGGAATCTGGCGCAATGGTGTTCTACTTCAAGAGCAATGTGGTCCAGCCG	65	+	chrX	6907980	6908045	6907980..6908045	CG4593-RA,	FBgn0029929,	CG4593,	1	.
CG31272-RA	TGTGTGCGTTTTTGGCAGTGCCTTGAGTCAAAACTTCAGTATGCTGGTGATGTTCAAGTTTCTGGGGGG	69	-	chr3R	6584107	6584176	6584107..6584176	CG31272-RA,	FBgn0051272,	CG31272,	1	.
CG12906-RA	ACGAATGCGTTCCGAGTCTCCTCGAAGCTCAAGATATACTGCGCTATCCATCATGCCCTCTGTGTGC	67	+	chr2R	6249896	6249963	6249896..6249963	CG12906-RB,	FBgn0041242,	Gr47a,	1	.
CG17208-RA	GCACTGGAACAACTAATTTCATAAAACATGCTTCAAAACTATATCTTCTTATGTCAGTTAAATTTATTT	69	-	chr3R	16263312	16263381	16263312..16263381				0	no match
CG10147-RA	ACGACATTGGCAAGCCTTTGAAGACCCATATGTGCGAGTTCTGTGGTCGGGTGTTCAAGACTGGC	65	-	chr3L	6480559	6480624	6480559..6480624	CG10147-RA,	FBgn0035702,	CG10147,	1	.
CG12840-RA	GCGATTCGGTTGCATTCTAGCCAAAGGCAAAAGTTTGAAGTGGAAAAACATTCGAAATGGGTTGCGCAA	69	+	chr2R	2933402	2933471	2933402..2933471	CG12840-RA,	FBgn0033134,	Tsp42El,	1	.
CG13319-RA	TGGATCGATTAATGGGCCCTCTGTTCGAGAAGACGCTAGTCACCTACATGCAAGACCATCTGGAGCACT	69	+	chr2R	8811775	8811844	8811775..8811844	CG13319-RA,CG13319-RB,	FBgn0033781,	CG13319,	1	.
CG8330-RA	CGGAACGGAAAACAATTTTGGTAGAAGCAAAAAAGAAAAAAAATTTAATCACGTTAGATCCAAAACGGT	69	+	chr2R	2113154	2113223	2113154..2113223	CG8330-RA,	FBgn0033074,	tomboy40,	1	.
CG2184-RA	CGGTCGGGGGGGTTTTAGTTTGAATAAGGTGCCCATAACCACTAGTACCTAGGCTGATCGGAGGAAGCA	69	-	chr3R	25997498	25997567	25997498..25997567	CG2184-RB,CG2184-RA,	FBgn0002773,	Mlc2,	1	.
CG3714-RE	GTAGAGCTGGAACTCGTTCCGTCACACGAGGATTTCCCGCTGACTATGAAGCACAAACTCCCACGCAAT	69	-	chr2L	4189729	4189798	4189729..4189798	CG3714-RC,CG3714-RD,CG3714-RA,CG3714-RB,CG3714-RE,CG3714-RF,	FBgn0031589,	CG3714,	1	.
CG11650-RA	ACCTTTCGAACTATTAGCTTAAGTAATCGTACTGTTTGTAAAATACACGCAATTGTTAACGGCAGAAA	68	-	chr2R	4318138	4318206	4318138..4318206	CG11650-RA,	FBgn0002531,	Lcp1,	1	.
CG11001-RA	TCCGCTCGGTAATTTGCCAGAAAAAAACTAATCGAAATGGGCGTACAAGTAGTTCCAATTGCTCCTGGT	69	+	chr2R	15177657	15177726	15177657..15177726	CG11001-RA,	FBgn0013954,	FK506-bp2,	1	.
CG13701-RA	CCAACAGCACAAGTCGTCCGGAAAATCCAGCAAACTAAAGGCCACCGTTCAAATACAACCGCAGGCG	67	-	chr3L	18432606	18432673	18432606..18432673	CG13701-RA,	FBgn0036786,	skl,	1	.
CG14890-RA	CAATCATCTCGACGCCCGTGCACAAGGATTATTTGCCCGATGTAACGCAGCCGGAAAGCAACACC	65	+	chr3R	12395969	12396034	12395969..12396034	CG42243-RC,CG42342-RG,CG42342-RH,CG42342-RI,CG42342-RJ,CG42342-RK,CG42342-RL,	FBgn0259244,	CG42342,	1	.
CG10582-RA	TCCTGTCGAAGAACCTGAGGGACAGCCTGTATCTCTTTCAATACCCCACGAAAACGGAGCTCCCC	65	+	chr3L	21025090	21025155	21025090..21025155	CG10582-RA,CG10582-RC,	FBgn0028402,	Sin,	1	.
CG6852-RA	CCGCTTTGAGATCCCCAATAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCCA	69	+	chr3L	18862618	18862687	18862618..18862687	CG6852-RA,CG6852-RB,	FBgn0036820,	CG6852,	1	.
CG10236-RA	GGAGTGGTTCCGTGCTCTGAGCAGGTGGAACGCGGTTTGTTCTTCAATAACCAGAAGGCGTTTGTAAAG	69	-	chr3L	6197775	6197844	6197775..6197844	CG10236-RA,	FBgn0002526,	LanA,	1	.
CR33326-RA	AGTGTGGTTAGCTGGTTGTGTAGCCAATTATTGCCGTTGACAATTCACAGCCACTATCTTCACTGCC	67	+	chr3R	5926677	5926744	5926677..5926744	CR43033-RM,	,	mir-34,	1	.
CG2173-RA	ACGTGAGGATAAGGAGGGCGACCGTGAACCCATTCTGGCTAGTTTGATTTGCAGGACGTTCCATGATCA	69	+	chr2R	4053847	4053916	4053847..4053916	CG2173-RA,	FBgn0021995,	Rs1,	1	.
CG15731-RA	TGGCTTCCTCATCTGCTACGTGAAGTTCCATAGTTTTCAACCCCCAAGCAAGAAACTTCCAGCAATGAA	69	-	chrX	12351718	12351787	12351718..12351787	CG15731-RA,	FBgn0030390,	CG15731,	1	.
CG17176-RA	TGGACATTATAGAGAGCAAGCTCTACAACTATGACATGGATCCGTTTACCTGCTTCCACCCCTGGGCCT	69	+	chr2L	12923793	12923862	12923793..12923862	CG17176-RA,CG17176-RB,CG17176-RC,CG17176-RD,CG17176-RE,CG17176-RF,	FBgn0040510,	ACXA,	1	.
CG15601-RA	AGGCCTACGGAGCGATCATCCGGTCCCTGAAGATACCCCAACTGACAGTGTCGGACATAAAGCTAAAGA	69	+	chrX	15605274	15605343	15605274..15605343	CG15601-RA,	FBgn0030673,	CG15601,	1	.
CG8306-RA	AACAGCTATCTGCACGACTATCCTCTGAACAGTGCCGTCTGGTATCCCAACCTGCGTCTGGTGAA	65	-	chr2R	12477738	12477803	12477738..12477803	CG8306-RA,	FBgn0034142,	CG8306,	1	.
CG31732-RB	GCCAACTGCGAGACCTCCCTTCCCTGCTGAAAAACCAAGAAAATCAAAGCGTGGAACTCTGCACGAAGT	69	-	chr2L	15258628	15258697	15258628..15258697	CG31732-RB,CG31732-RF,CG31732-RK,CG31732-RJ,CG31732-RL,	FBgn0045842,	yuri,	1	.
CG12993-RA	CAGGGATCAATGAGTAGCACATAGTCTAGTTATTTTATTTGCTCGACCAGTTGCTCTTAGCTCTACATT	69	-	chrX	17340522	17340591	17340522..17340591	CG12993-RA,	FBgn0030840,	p-cup,	1	.
CG8201-RA	GGTGCGTGCATGGAGATCCCAATACGGACTCACTGGTGCAATGGGAAATAGAAGTGTGCAAGCTGC	66	+	chr2R	15370683	15370749	15370683..15370749	CG8201-RA,CG8201-RB,CG8201-RG,CG8201-RP,CG8201-RU,	FBgn0260934,	par-1,	1	.
CG3871-RA	CCGCGCATGTTCAATGCTCCAAGCTATTATCCCGAAACGATTTTCAATGGGCAATAAACTGCGATGTGA	69	-	chr3L	20782153	20782222	20782153..20782222	CG3871-RA,CG3871-RB,	FBgn0027364,	Six4,	1	.
CG5014-RA	TCGCAAGGGGGAACATCTCTCAAGAACTCTTTAAAATCCGCTAAGATCCATACGTATATTTGCTCAGAT	69	+	chrX	3847661	3847730	3847661..3847730	CG5014-RB,CG5014-RA,CG5014-RC,CG5014-RD,	FBgn0029687,	Vap-33-1,	1	.
CG1716-RA	TTAAGCACATTCGACCCCTAGGATGCGATCTACCCCTCGTAGTGGGTAGCGTTTTAAGTGGGGGC	65	+	chrX	13314883	13314948	13314883..13314948	CG1716-RA,CG1716-RB,	FBgn0030486,	Set2,	1	.
CG2247-RA	TGCCGAATCCTCCGGATATTCTCGCTACACTCGACATTAGCGTCCTGAAAGCATTGCGTGTTCTTCGCA	69	-	chrX	11501750	11501819	11501750..11501819	CG2247-RA,CG2247-RB,CG2247-RC,CG2247-RD,	FBgn0030320,	CG2247,	1	.
CG32375-RA	CAAAAAGGGAGCAGTAGTTGAAGGTTGCGGCAAAATGGCCCAGTTTGTGACCCACATCCAGCCAA	65	-	chr3L	7710909	7710974	7710909..7710974	CG42734-RR,CG42734-RK,CG42734-RE,	FBgn0261788,	Ank2,	1	.
CG7726-RA	GCAACTTCGGTTTCGGCATCCAGGAACACATCGATCTGGGCATCAAGTACGATCCCTCCATCGGTATCT	69	+	chr2R	15330498	15330567	15330498..15330567	CG7726-RA,	FBgn0013325,	RpL11,	1	.
CG6195-RA	TGAGTTCACCACTTTGACCTGCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGTTGCTGGA	69	-	chr3R	15473523	15473592	15473523..15473592	CG6195-RA,	FBgn0038723,	CG6195,	1	.
CG6902-RA	TCCTGCTCTCTGTGCGTGTTATTTGACTTTGACCATTGGCAGCAGAAACGCCATATCATGTCTGCGAGA	69	-	chr3L	8484440	8484509	8484440..8484509				0	no match
CG6814-RA	GCCAAGCTGTATCCGGATTTTGGTACCAAGGACAAAGACACAGTTACGACGGGGGCCAGTATTACGCCC	69	+	chr3R	12092169	12092238	12092169..12092238	CG6814-RA,	FBgn0020407,	asun,	1	.
CG32529-RA	ACAAACATACACCAGACCAAAATGTAGGCGAAGGCTTTTCACTTAGACGTGAGAATTTCGAGAGATGCG	69	+	chrX	19799431	19799500	19799431..19799500	CG32529-RD,CG32529-RA,CG32529-RC,CG32529-RE,CG32529-RF,CG32529-RG,CG32529-RH,	FBgn0052529,	CG32529,	1	.
CG13417-RA	CGCTGCATTGTGGTTATGATATACGCCGGATTATGGCCAATGTTGACCTCAGCCGTAATAGGCAAACGA	69	+	chr3R	17658597	17658666	17658597..17658666	CG13417-RA,	FBgn0041229,	Gr93a,	1	.
CG2227-RA	CCGGTGAGCTGGACTACGGATTTGTGTTCAAGGCTCTCCAGGAATTCGGCTATGATGGATGGATCGGTT	69	-	chrX	10223071	10223140	10223071..10223140	CG2227-RA,	FBgn0011770,	Gip,	1	.
CG2872-RB	TGTGGCCCTCGAACGGATCGTATCCACAATAGTTCCCGTATTCTTTGGCATTATCGGATTCGCAGGACT	69	+	chrX	3539700	3539769	3539700..3539769	CG2872-RB,	FBgn0028961,	AlstR,	1	.
CG31199-RA	CCTGCTCAACGAGACCCTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTTCAG	69	-	chr3R	16568843	16568912	16568843..16568912	CG31199-RA,	FBgn0051199,	CG31199,	1	.
CG1891-RA	GCACCATTTCTTGCGGCATAGCAGAGGAGTACAAGGTGCCCTTCTACGATGTGGTGCCAATGGAT	65	+	chr2R	3696566	3696631	3696566..3696631	CG1891-RA,CG1891-RB,	FBgn0003317,	sax,	1	.
CG17597-RA	GCAACCTGTTGATCCACTTCAGTCGATACAGAAAGTCCAATCCGTGATCCCGCAAAGAACCAACAGCCG	69	-	chr2L	18830588	18830657	18830588..18830657	CG17597-RA,	FBgn0032715,	CG17597,	1	.
CG1554-RA	ACTATTTGTAGCGTTTTCCATATACCCTTTAAATCCCTAATTAACCCGATCAGTTGTTTTCGCCTGCAC	69	-	chrX	11456962	11457031	11456962..11457031	CG1554-RA,	FBgn0003277,	RpII215,	1	.
CG13488-RA	TGGAGGAAAATCTTGACTCGTGGCGGACCCCGAAGATTGGAGAAGCTGAGGGAATTCGTCAAATGGC	67	+	chr2R	17839822	17839889	17839822..17839889	CG13488-RA,	FBgn0034670,	CG13488,	1	.
CG8866-RA	GTGGAAATGTCGACGTTGTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCG	65	-	chr3R	5160069	5160134	5160069..5160134	CG8866-RA,CG8866-RB,	FBgn0037679,	CG8866,	1	.
CG8004-RA	TTACTCCGTTAATTTACAATGACATCCCAGTACCTGAGCCAGCTAATAACGGCCGACAAATTGTCCGCC	69	-	chr3L	19921486	19921555	19921486..19921555	CG8004-RA,	FBgn0036920,	CG8004,	1	.
CG13002-RA	ACGCTTGCCATGAAGAGGGACAGCTTCTGCATGTCCTTGTCAAATCCCATGGAGCTCTGGTATCCCATA	69	+	chrX	16784265	16784334	16784265..16784334	CG13002-RA,	FBgn0030804,	CG13002,	1	.
CG15536-RA	GCACGGCAACCAGAAGAACCAGCTTGAAAACAGTCCACAGAGCAGTAAAATCGTTGAGCTACAGGGCGA	69	-	chr3R	26250437	26250506	26250437..26250506	CG15536-RA,	FBgn0039766,	CG15536,	1	.
CG8654-RA	CTGTGCGCTCATGACCAAGTACCTCGGACGCAAGAAGACCCTGCTTCTTTCCAATGGATGCAGTG	65	+	chr2R	15871144	15871209	15871144..15871209	CG8654-RA,CG8654-RB,CG8654-RC,	FBgn0034479,	CG8654,	1	.
CG7781-RA	GCCCCCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCACCAACTATTGCTATCA	69	-	chr2L	8322632	8322701	8322632..8322701	CG7781-RA,	FBgn0032021,	CG7781,	1	.
CG14573-RA	GAGGATGTGGATACAGATGCCTTGCCTTCGGAACAGGATCCACCAGTGGACACCTTCGAGCCTAG	65	+	chr3L	21727437	21727502	21727437..21727502	CG14573-RA,	FBgn0037125,	CG14573,	1	.
CG13282-RA	CGCGCCACAATCCGATGGACAGACAGTGCCTTCACATAGACGAGTCACTGGAGAAGTCCAATCTGACTG	69	-	chr2L	16833529	16833598	16833529..16833598	CG13282-RA,	FBgn0032612,	CG13282,	1	.
CG14034-RA	TGCTGGCTTAGATGATATGAACTGTTTTTCCCTGCAAAACGAAATTTGTCCCAATGCCAACATTTCCTT	69	-	chr2L	5216346	5216415	5216346..5216415	CG14034-RB,	FBgn0250847,	CG14034,	1	.
CG31804-RA	AGACAGAACGAAACGGACACAGTGGATTCGGCTATGGATGTAGCTACCAGGCAAAGTGCATCCACCAAA	69	+	chr2L	17363662	17363731	17363662..17363731	CG31804-RA,	FBgn0051804,	CG31804,	1	.
CG8708-RA	TGCTCTATCCGTACAATCCCGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAG	65	-	chr2R	4047847	4047912	4047847..4047912	CG8708-RB,CG8708-RC,CG8708-RD,	FBgn0033271,	CG8708,	1	.
CG6340-RD	GGCGCAGATTCGTAGATCCATACGCTCTAATGTAATTCTCCTCAATGTGTTGCTTCATCCCGTTCCAGG	69	+	chrX	15379086	15379155	15379086..15379155				0	no match
CG8920-RA	TCGTGTTCGTGCAATTTCTGTGGATGAGGAGACCCGCTCGGGCCGTTATCACTTTATCGACTTTGGC	67	+	chr2R	16210837	16210904	16210837..16210904	CG8920-RB,CG8920-RA,CG8920-RC,CG8920-RD,CG8920-RE,	FBgn0027529,	CG8920,	1	.
CG17218-RA	TGACGCGCGAACAGTCTTGTGGTGAATGAGCGATGTGTAATCAAGTGCCTTTTCTGTAACGGACTCGTA	69	+	chr2L	12173801	12173870	12173801..12173870	CG17218-RA,CG17218-RB,	FBgn0032421,	crok,	1	.
CG15209-RA	TGACCCATGCAGATATACATACTATGGCAACTATATGATATTCTCCGACCTGACTTTCTTTAGAACATT	69	+	chrX	10736859	10736928	10736859..10736928	CG15209-RA,CG32669-RA	FBgn0030237,FBgn0052669	CG15209,CG32669	2	.
CG15267-RA	TCCTGTCCATTTACCTGAGCAAGTGCACTACGTTTTTTGATCAGCTGGAGAAGAGTCTGCCTACGGCCT	69	+	chr2L	15251848	15251917	15251848..15251917	CG15267-RA,	FBgn0028862,	dao,	1	.
CG14028-RA	TGTAGAACAAGAGTTGCGCTTCTGTATTGAAAACTAAATAGATTTCAGTCTACGTACGTGCACGAAGGC	69	+	chr2L	5327850	5327919	5327850..5327919	CG14028-RC,	FBgn0015031,	cype,	1	.
CG33110-RA	CGCCATCTGTGGCTGCATTCGCATGTGTAGAACCGTACAACAAACTGGGTCAATTTTCGAGATCTGCCT	69	+	chr3R	18405790	18405859	18405790..18405859	CG33110-RA,	FBgn0053110,	CG33110,	1	.
CG4662-RB	TTCGCTTGTCAAGGATCTCCACGAATGGGAGGAGTGTTGGGATAGGTAGGTGTGTCTTAACTAATGCAT	69	+	chr3R	15679771	15679840	15679771..15679840	CG4662-RB,	FBgn0038735,	CG4662,	1	.
CG2684-RA	ACCGTCAGGACATTGTTAATGAGTTCAACGATCGCAACAATCAGAAGCGCGTTCTCTTGCTTTCCCTTA	69	+	chr3R	3749604	3749673	3749604..3749673	CG2684-RA,	FBgn0002542,	lds,	1	.
CG17005-RA	GCCGTTGTGGGTCCAAAATATCACGATGTCACACTTGTCATTCTCGTTTGCTTCAAGGGATCGTGGCCT	69	+	chr2L	9328538	9328607	9328538..9328607	CG17005-RB,	FBgn0032109,	CG17005,	1	.
CG8398-RA	ACTTCGAGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCACAAGCACCTG	65	+	chr3L	6609586	6609651	6609586..6609651	CG8398-RA,CG8398-RC,CG8398-RD,	FBgn0035708,	CG8398,	1	.
CG14561-RA	GAAGAGGAACCCCAGAACGATCCTCAGTACGTTGCCCTACACGAGATAAACGCCCAGATCAGCCC	65	+	chr3L	22059514	22059579	22059514..22059579	CG14561-RA,	FBgn0037149,	CG14561,	1	.
CG6891-RB	CGACCCCAAGTCACTTATCAAATCTCTGACCTGCTTTCCGCCGGCTGCTGATTGAAAATTGTCACGCGT	69	+	chrX	18673752	18673821	18673752..18673821	CG6891-RB,	FBgn0030955,	CG6891,	1	.
CG6802-RA	AAACGTCTCAGGATCTGAAGCTGTCCAATGGTATAGTGGTTCCCAAAGGGGTCCAGATCGCCATCGACA	69	-	chr3R	8505465	8505534	8505465..8505534	CG6802-RA,	FBgn0038076,	Cyp313a4,	1	.
CG32491-RG	CCGCGGTGGACAAAAACTCACAGGAGCGAATCATCAAATGCACCTACGAGCATGATCACAGCCGGAAAT	69	-	chr3R	17180316	17180385	17180316..17180385	CG32491-RG,CG32491-RH,CG32491-RQ,	FBgn0002781,	mod(mdg4),mod(mdg4),mod(mdg4),	1	.
CG10954-RA	GCGAGCAACACGACTAAGGGATGCCACCAACTTGTTATATAGTCGCAATGGAGGATTCATCCCCGCAAT	69	+	chr2L	20422847	20422916	20422847..20422916	CG10954-RA,	FBgn0032859,	Arc-p34,	1	.
CG32415-RA	TTAAAAGCCAAGCTAGCCGTGCTAACCGTGCCTATCTGGGGCCTTTCCATCTCATTGCAGTCGAG	65	+	chr3L	5797259	5797324	5797259..5797324	CG42272-RE,	FBgn0259167,	CG42272,	1	.
CG7943-RA	TCGCCTAAGTCGCTTGTGCACAGATGCTGAATTCTAGGTGTTAATGTACATACACGCATCCCAAGCGGA	69	+	chr3R	25874020	25874089	25874020..25874089	CG7943-RB,CG7943-RA,	FBgn0039741,	CG7943,	1	.
CG1725-RC	GCCATAACAACGGCATTCAAGCCAAAATGCTTAAGCGCGCTTTTGAGTCCACCTAGTTTTACCCCGCCA	69	+	chrX	11282151	11282220	11282151..11282220	CG1725-RC,CG1725-RJ,CG1725-RI,CG1725-RO,	FBgn0001624,	dlg1,	1	.
CG18174-RA	TGGAAGGACGGCCTCACGTTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGC	65	-	chr2L	5058819	5058884	5058819..5058884	CG18174-RA,	FBgn0028694,	Rpn11,	1	.
CG7257-RA	CCCCTGGTGTACAACATGACCCATGAAGATCCCGGAAACGTAAACTACGCTGAAATCGGTGGACTTGGT	69	+	chr3L	11935578	11935647	11935578..11935647	CG7257-RA,	FBgn0036224,	Rpt4R,	1	.
CG8390-RA	AGGGGTGCTCCTCGATCTTGCATGGCTCCTGATGTACTGCTTGTAGATAACGAGTCAAGTCCAGACCAT	69	+	chr2R	1591457	1591526	1591457..1591526	CG8390-RA,CG8390-RB,CG8390-RC,CG8390-RE,CG8390-RF,CG8390-RG,CG8390-RH,CG8390-RI,	FBgn0259978,	vlc,	1	.
CG2909-RA	TGCGGTCACGTTGATCTGAACACGAAAACTTTGGAACGTCACGGGGTTATTGTGGGCATGATTGGAGCC	69	+	chrX	10221376	10221445	10221376..10221445	CG2909-RA,	FBgn0030189,	CG2909,	1	.
CG17752-RA	CCTGCAGTGTCATTCAGTATGATGTCGACATGACCTCTTTTCGGGATAACAAGTGCTCCTCCTGGGACT	69	+	chr3R	15436431	15436500	15436431..15436500	CG17752-RA,	FBgn0038718,	CG17752,	1	.
CG12824-RA	GCGGAGCCATCAAGGTCGGCCATACTCCCAATGCAACTTCCAATTTTTCACCCACATTCTCTCATCGCA	69	+	chr2R	3678127	3678196	3678127..3678196	CG12824-RA,	FBgn0033222,	CG12824,	1	.
CG3182-RB	CGCCTGGCGATATCCTAGTACACCGAGGAGATGTGCTCACCTCATTGTACTTCATAGCCAGGGGATCCA	69	+	chr2R	19939587	19939656	19939587..19939656	CG3182-RA,CG3182-RB,	FBgn0003353,	sei,	1	.
CG6224-RA	CCGGAATAGTATTAGAGTTAGCATTGTTCCCACGTTCACCTGCAATAACACATCCCCATCACTCCTGTG	69	+	chr3L	15823904	15823973	15823904..15823973	CG6224-RA,	FBgn0040230,	dbo,	1	.
CG18679-RA	AAATGTCTGTGCCGCAAGGGATTCTACTTCCCGGACATCGTCTCGCAGCACAAGTTCTTCAACGG	65	+	chr2R	19369612	19369677	19369612..19369677	CG34372-RC,	FBgn0085401,	CG34372,	1	.
CG32571-RA	CGTTTCCTCCGTGATCGGTAGCCTGGGCGATAATGGAGCCTCCGGAGTGTTGACCGATGCCAGCG	65	+	chrX	16626197	16626262	16626197..16626262	CG32571-RA,	FBgn0052571,	TwdlX,	1	.
CG4944-RA	TTGGAGGGATTCAACCAGGACAAACTGAAGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCC	69	+	chrX	4003784	4003853	4003784..4003853	CG4944-RC,CG4944-RA,CG4944-RB,CG4944-RD,	FBgn0026084,	cib,	1	.
CG7196-RA	TGGTTTCCCATCCATGAGAGTCCAGATATTTCACCAAATCGTGCAAACATCAATTAGGCTGGGGTACCT	69	+	chr2L	7765473	7765542	7765473..7765542	CG7196-RA,CG7196-RB,	FBgn0031944,	CG7196,	1	.
CG8358-RA	CGATGGCAATGGTCACATGGAGTCCTTGTTGTCGGAAATTTCGCAACAGGCATTAGAGGATCGCGCC	67	+	chr3R	5502960	5503027	5502960..5503027	CG8358-RA,	FBgn0037727,	CG8358,	1	.
CG7214-RA	CGCTCTTAGTCCCAACCCCCTCGATACGAACACGATCCTGATCTTGGGTCCATGTCCATATCCTCTGGA	69	-	chr2L	7743985	7744054	7743985..7744054	CG7214-RA,	FBgn0031940,	CG7214,	1	.
CG14939-RA	TATACGATGAACGATATTCGGCTTCCCCGCGTCAGGCTTCAGGCACAAATCGATTTTCTGGGGGC	65	-	chr2L	11810303	11810368	11810303..11810368				0	no match
CG32241-RA	CACCGAAGAAGGTCGTCTACACTCCACCCCCAACTGGCATCCTGAAGGACGATGGCTACCACTAC	65	.	.	.	.	.	CG32241-RB,	FBgn0052241,	CG32241,	1	.
CG3763-RA	ACATCACAATCCAAGCCACGTCAACCCCAAATAATTAACCCCAAGCAAAAATGTTTGACTGGACCGGTA	69	+	chr2L	9426884	9426953	9426884..9426953	CG3763-RA,	FBgn0000640,	Fbp2,	1	.
CG4691-RA	CGGATCCAGAGTTTCAGATGCACGCCTTTATCGATTCGCGCAAAAGTTGTTTAGAAGACCCCTGCGCCA	69	+	chr2L	14761223	14761292	14761223..14761292	CG4691-RA,	FBgn0028870,	CG4691,	1	.
CG11059-RA	TGTAAAATGCACATGTCTACCAAATTTCAACTGAATTCTGTCGCAATGCATAGGAGGAAGTTTCTCCGT	69	-	chr4	1135981	1136050	1135981..1136050	CG11059-RA,CG11059-RB,	FBgn0039928,	cals,	1	.
CG12233-RA	CGAAGAGAAGTATCTGGATACGGTGTGCCTGAACATGGTCCAGAACCCCGGAAAATACGACGTGCTGGT	69	-	chrX	19413726	19413795	19413726..19413795	CG12233-RA,CG12233-RC,	FBgn0027291,	l(1)G0156,l(1)G0156,	1	.
CG12306-RA	GCCCCATTTACACTCCTGGTTCCGTACAACATGTGCCGTAGTTATGCATTTGACCAACGGTTCTGTGCA	69	+	chr3L	20305641	20305710	20305641..20305710	CG12306-RA,CG12306-RB,	FBgn0003124,	polo,	1	.
CG31720-RA	CGACGATGCGGATTTGGATAGAGGTGCATTACCGGAACAGAAGTTTCTGGTGCGTGCTTGTCAGGAAAT	69	-	chr2L	10237087	10237156	10237087..10237156	CG31720-RC,CG31720-RD,	FBgn0051720,	CG31720,	1	.
CG8236-RA	GCAGAACGTTTTGTCGAGTGGCTGAACTCCTTTGGCACCTTGGAAAGCAATTTGACCCCGGAAAAGGTC	69	+	chr3R	4596129	4596198	4596129..4596198	CG8236-RA,	FBgn0037626,	CG8236,	1	.
CG2512-RA	TGCTGAGGAGTACTAGAGCGGATAGGTGTGCATCCCTCAAAATCTTGCTTATTTTCATACGCTCCCACT	69	+	chr3R	3358317	3358386	3358317..3358386	CG2512-RA,	FBgn0003885,	alphaTub84D,	1	.
CG16986-RA	TCGAATTCGCTAAACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTACAG	65	+	chr3L	2600891	2600956	2600891..2600956	CG16986-RA,CG16986-RB,	FBgn0035356,	CG16986,	1	.
CG14317-RA	CGATCAGGTACGCATGGCTAGGGCCTATCCACAGTTCATGCCACAGATTCTCAAGTTCTGGCAGAGG	67	+	chr3R	13906997	13907064	13906997..13907064	CG14317-RA,	FBgn0038566,	CG14317,	1	.
CG32407-RA	GCTCGCAGGTTAGACATTCCGCTCCCAGATAAAGAAAACTACCCCCCCGAGCTCGTCCACGAAAATTGT	69	+	chr3L	5915592	5915661	5915592..5915661	CG32407-RA,	FBgn0052407,	CG32407,	1	.
CG5899-RA	CGACCGCCGTAAATGTCCGCCAGGATTTGATCACCGACTTCAATGGGGACGATAGCATCTTTGTGTTCC	69	-	chr2L	9909603	9909672	9909603..9909672	CG5899-RA,CG5899-RB,CG5899-RC,	FBgn0032157,	Etl1,	1	.
CG5883-RA	CGGATGCGTTGTTGGGCAAAGGAACATGCAACCTGGGAATGTACTTCGATCAAGTAAGCAAGAGTTGCG	69	-	chr3L	11937417	11937486	11937417..11937486	CG5883-RA,	FBgn0036225,	CG5883,	1	.
CG7773-RA	TGAGCGGCAAGCATCTGGAAACCAAGCAATATTACACCCTGTACAACACACTCAACGACAAAAAGCGCT	69	-	chr2R	12150175	12150244	12150175..12150244	CG7773-RA,	FBgn0025519,	fidipidine,	1	.
CG8829-RA	GATTTCGATTTGATTACAGTGGAGCAAATTGCAAGTGACGTGTCAACAATTGGACTGCATGCAGC	65	-	chr2L	3185490	3185555	3185490..3185555				0	no match
CG15669-RA	AGTGTATAAAGAAAAACACCCATCAAGAACAAGAACCAACAACTTACATGTTATCAAGTGACATAACGT	69	+	chr2R	17403251	17403320	17403251..17403320	CG15669-RA,CG15669-RF,CG15669-RD,CG15669-RE,	FBgn0043070,	MESK2,	1	.
CG17580-RA	GCTTGGTTATATCACTATCAACTTACGTGCAGTCCAATACTTGTCATACATGAATTCTAGCAGCTGGAT	69	+	chr2R	8694848	8694917	8694848..8694917	CG17580-RA,	FBgn0040755,	CG17580,	1	.
CG6865-RA	GCTGCAGCAGTTCATGAAACCAGCTCAAATCCAAGGAGTTGTGGGTTTGCATAGCATCAGGGAGTACCT	69	+	chr3L	18857527	18857596	18857527..18857596	CG6865-RA,	FBgn0036817,	CG6865,	1	.
CG13904-RA	CCTCGTCTTAGGCATTATGTTGGGCATTCGACTCACCGATTTTATAGGCTACCTGAAGCTGTGGAGGAA	69	+	chr3L	897562	897631	897562..897631	CG34057-RA,	FBgn0054057,	CG34057,	1	.
CG4574-RA	GCGATTTTGCAGTTTGCGGGAGCTAACATACCGATCCGGGTTACCCTGAAATTGTCGACTTGTGCCACA	69	+	chr2L	346373	346442	346373..346442	CG4574-RC,CG4574-RD,CG4574-RF,CG4574-RA,CG4574-RB,	FBgn0004611,	Plc21C,	1	.
CG1609-RA	TCCACCGCTAAAGGATGTGACCTATATCATGCGTCTGCTGTGGTCGGTTGGCATCCGATGTGGAA	65	+	chr3R	27226259	27226324	27226259..27226324	CG1609-RA,	FBgn0019990,	Gcn2,	1	.
CG31233-RA	CGCCTATACCGTCAACGACAAGCAGAAGGATGCCTTGCAAGAGTTGGTGGACACTGTCAAGGGTTCTGA	69	+	chr3R	17578646	17578715	17578646..17578715	CG31233-RA,	FBgn0051233,	CG31233,	1	.
CG6300-RA	ACGAATCGAATCGGTCTTACTGGCTAAACGTGTGAGTGTGGTGATCTTTGCTAGGTCTTCTCCTGCCGG	69	-	chr3R	15596659	15596728	15596659..15596728	CG6300-RA,	FBgn0038730,	CG6300,	1	.
CG13977-RA	GCCATGCTCATTAAGAACTTCACATTCTCCCCATGCTCAGCGACACCAGATCCCTTGACCTTCGATCCT	69	+	chr3R	23305882	23305951	23305882..23305951	CG13977-RA,	FBgn0039519,	Cyp6a18,	1	.
CG8560-RA	GTTAGCTTCAAGGCGTTCCATCGTCATGCCGAGATCAATGCCTACCTGGATGAACTGGCTGCTGC	65	-	chr3L	7396370	7396435	7396370..7396435	CG8560-RA,	FBgn0035781,	CG8560,	1	.
CG8604-RA	GATGTGGATGAGCTGAGCTTCGAGATTGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAG	66	+	chr2R	8498154	8498220	8498154..8498220	CG8604-RA,	FBgn0027356,	Amph,	1	.
CG17122-RA	AGGGTCTGACCAGGAACTACGAGAAACTGAAAGCCAAGTACGTGGAGGTACTGCGCTACAAGAAGGCCT	69	-	chr3L	20267477	20267546	20267477..20267546	CG17122-RA,	FBgn0036962,	CG17122,	1	.
CG7168-RA	GCGCATTCGCAATATTGTCGACGGAATACACTGATACGACTCCAGAACTCATACACTTGTTAAAGCTAA	69	-	chr3R	14050662	14050731	14050662..14050731	CG7168-RA,	FBgn0038586,	CG7168,	1	.
CG10327-RC	AAGATGACACTGGATGGCTAATAACACAATTGATAAAACACACTTCAAAATAAATTCTGCGCCAAAGCT	69	-	chr2R	19746856	19746925	19746856..19746925	CG10327-RB,CG10327-RC,CG10327-RA,CG10327-RD,CG10327-RE,CG10327-RF,	FBgn0025790,	TBPH,	1	.
CG11200-RA	AGGAGTTCCCGAAGTCCTGGTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAATCGTTGGG	68	-	chr2R	16193959	16194027	16193959..16194027	CG11200-RB,CG11200-RA,	FBgn0034500,	CG11200,	1	.
CG3707-RA	TGGGATCTGAATCGGAATCGAAGAGCCATCGCAATTGTCGTTAACCACACCGAAAGCCTGCCACCAAAA	69	-	chrX	2044833	2044902	2044833..2044902	CG3707-RA,CG3707-RB,	FBgn0004655,	wapl,	1	.
CG4560-RA	TGAATCCTTATGCTACTTGCTACTTGAATTCACAAACTATGTTTTACCATTTTCAGTCCGACGTG	65	+	chr3R	11660862	11660927	11660862..11660927				0	no match
CG32510-RA	AAAAAAAACAAGAAGGACTAGACCTATGTGCTCAGAAGGCGGCCGAGGCGATGACCTGCAGGGCC	65	.	.	.	.	.	,CR12628-RA,CG1742-RB,CG1742-RA	,FBgn0042701,FBgn0025814	,CR12628,Mgstl	2	.
CG11035-RA	GCCGAAAGCTCCTACGACACTCCCAAGCAGAAAGCGAAGGAACGATACAGACGCGATCAAGAAGAGCG	68	-	chr3R	3857964	3858032	3857964..3858032	CG11035-RA,	FBgn0037544,	CG11035,	1	.
CG7818-RA	AGAACTTCATCCGTGATGTCGGCCTAGCTGACCGCTTCGAGGAGTATCCCAAGTTGAGGGAACTGATCA	69	+	chr2L	8308922	8308991	8308922..8308991	CG7818-RA,	FBgn0032016,	CG7818,	1	.
CG4699-RB	GCATAGAGCTAAGCAGTTACTGATAATTGTACACTAACCAACGATCAAGAAATCATCGAACGCACCCAC	69	+	chr3R	11627039	11627108	11627039..11627108	CG4699-RD,CG4699-RH,CG4699-RE,CG4699-RJ,CG4699-RG,CG4699-RI,CG4699-RF,	FBgn0262527,	wah,	1	.
CG4897-RA	GCTGCGCAAGATGGTCTAAGGACTCCTTTTGATTTATGTGCTGAAACGACAACTGCAGCGGTTCGATGT	69	+	chr2L	10202039	10202108	10202039..10202108	CG4897-RA,	FBgn0005593,	RpL7,	1	.
CG32491-RT	CGCCAAGGAGGAAGAAGTGGACCCCAATGATTTCCGTGAAAAAATCAAGCGACGACTGCAAAAAGCACT	69	+	chr3R	17186722	17186791	17186722..17186791	CG32491-RT,CG42770-RA,CG42769-RA,	FBgn0002781,FBgn0261838,FBgn0261837,	mod(mdg4),pre-mod(mdg4)-Z,pre-mod(mdg4)-T,	3	.
CG9398-RA	TGCACAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCTCAACTTTCATGGGCGCGT	67	+	chr2R	17010496	17010563	17010496..17010563	CG9398-RA,CG9398-RB,	FBgn0015721,	king-tubby,	1	.
CG9072-RA	GGATAACGTCTACTCGGATCCACGCCTCGAGCAACTGATTGTCTATCGGGCTTTGTTGCAGCACCTG	67	-	chrX	14989836	14989903	14989836..14989903	CG9072-RA,	FBgn0030614,	CG9072,	1	.
CG15154-RA	CTCGGACGGATTTTTGAGTTGTGGCACTCTTGAAAGCGAGCTGGTAGAATGTAGAATCGAAATCGCAGT	69	-	chr2L	18139260	18139329	18139260..18139329	CG15154-RA,CG15154-RB,	FBgn0041184,	Socs36E,	1	.
CG17761-RA	TCCCTACATTCATGAGATGCGCGAAAGATTACTGGACCAGCCGCGGGAGACACTTCAACTGGAGAACAT	69	-	chrX	5537018	5537087	5537018..5537087	CG42492-RB,CG42492-RC,	FBgn0259994,	CG42492,	1	.
CG8181-RA	CTGAAACCACCGATTACAGCGGCGAAGAACCGAACACAACGACCATCGAGGCTACAGGCAGCACC	65	-	chr2R	4883096	4883161	4883096..4883161	CG34350-RA,CG34350-RB,	FBgn0085379,	CG34350,	1	.
CG2655-RA	CGCAGGACGTAGAATAAGGAATCTAATGGATGGAATCTTGGAAAAAGTGGATACCGGCTTTGCCAAAGC	69	-	chrX	2574406	2574475	2574406..2574475	CG2655-RA,	FBgn0011276,	HLH3B,	1	.
CG15645-RA	TCCAGAAGTTGTTGGACCAGAACGTGGATCTCGCCGAGAATCTCATCCGAATGAAGAGCAAGCACCAAT	69	-	chrX	15471699	15471768	15471699..15471768	CG15645-RB,CG15645-RA,	FBgn0030657,	cerv,	1	.
CG4615-RA	TGATATACCCGATGTACCCGAGTCTCTGCTCCACAATTAGCCAAATTTTAAGCGAGCGAGGACGCCTAG	69	-	chrX	6993231	6993300	6993231..6993300	CG4615-RA,	FBgn0029935,	CG4615,	1	.
CG9115-RA	ATCGGTCCGCTTGTGGAAGGGCCTATACTGTCGCTGGAATCCTGGTCTGTGCGCTCCTCAGCATG	65	-	chr2L	6035030	6035095	6035030..6035095	CG9115-RA,	FBgn0025742,	mtm,	1	.
CG9003-RA	AAGTGCGCGGACCTCACCGATCTCACTCTGTTGTCCCTCTCGCAGCACAATCATCTACTGAACAC	65	-	chr2R	7531297	7531362	7531297..7531362	CG9003-RA,CG9003-RB,CG9003-RC,CG9003-RD,	FBgn0033639,	CG9003,	1	.
CG4933-RA	CCGCTCTGGCACTAGGATGCCCTTTGAGGAATCTTATGTGACTCAGCGATTTCGAACGGACGAAGTGCT	69	+	chr3L	16346222	16346291	16346222..16346291	CG4933-RA,	FBgn0036615,	CG4933,	1	.
CG10089-RA	CCCCCACCGGATTTTAGCTTGGGCAAGGACCTTATGCCAAGTGTGCGTTACTACGATCCGGAGTG	65	-	chr3L	13461314	13461379	13461314..13461379	CG10089-RB,CG10089-RA,CG10089-RC,	FBgn0036369,	CG10089,	1	.
CG8418-RA	ATTACATCGACGAGGCATTCTACACGTTGGTCCGCGAGATTCGACGCAAGGAAATGCACAAGGCC	65	-	chr2R	11996372	11996437	11996372..11996437	CG8418-RA,CG8418-RB,	FBgn0017549,	Ric,	1	.
CG4444-RA	AGTGGAATGCCTCCGACTACCTCTAGTTCCCACATTCCCAACATGGGTCACTATTACCACCACGG	65	-	chr2R	18385205	18385270	18385205..18385270	CG4444-RA,CG4444-RB,	FBgn0003175,	px,	1	.
CG33117-RA	CCCGAGAAATAGCCCAAGTATTCGGCAATCCCTCCGTCGATAAATACACGAAGGCTCGCAATTTGCCCA	69	-	chr2L	19913248	19913317	19913248..19913317	CG33117-RA,	FBgn0053117,	Victoria,	1	.
CG9096-RC	CAGCACCATAGCTGCATCGAGCATAGCTGCGTCAATGAATGGCCTAAAGTGGCATCTGCGATCGG	65	-	chrX	15801742	15801807	15801742..15801807	CG9096-RD,CG9096-RE,CG9096-RF,	FBgn0010315,	CycD,	1	.
CG10964-RA	TCACTATTTTCACGCTTGTGTTACGGCAATAAAGTCGATTGATAAGCACGGAAAGATCTGGCTGCGGGT	69	-	chrX	8137231	8137300	8137231..8137300	CG10964-RA,	FBgn0030026,	sni,	1	.
CG31149-RA	ACGCTTCTCGTCGTCTCGTCCCTAATCTGTCTCCTATGCATACTCTGTCACTCCAGAAGAAGCCGTAGA	69	+	chr3R	14800759	14800828	14800759..14800828	CG42613-RH,CG42613-RE,CG42613-RF,CG42613-RG,	FBgn0261262,	CG42613,	1	.
CG8344-RA	TGGGTCCCATGAAAGATGCGCTGACGAACAAGGTTATCTTCAAGCACGACGTTCTGGACACTGACGGAA	69	+	chr2R	7929066	7929135	7929066..7929135	CG8344-RA,	FBgn0004463,	RpIII128,	1	.
CG4974-RA	CCCTTGAAGTGCACCTCTCCTTCTAGCTTTTCCAAATTTGATGCTCATCGAACTTCCATGCCGAATCCA	69	+	chr3L	8882672	8882741	8882672..8882741	CG4974-RA,CG4974-RB,	FBgn0011577,	dally,	1	.
CG5798-RA	GCTGCCGCCAAACTCGAATGTATGTCAGCTGAACCAGTGCATGGACATGTACTTCAGTGGAGAAAGGAT	69	+	chr3R	16963017	16963086	16963017..16963086	CG5798-RA,CG5798-RB,	FBgn0038862,	Ubpy,	1	.
CG15110-RA	GCCACTGATAAGCCAATCGAGATAGCACAGCCTGCATTTCACCGAATAATAACTATTTTTTCGCACGGC	69	+	chr2R	15020965	15021034	15020965..15021034	CG15110-RA,	FBgn0027535,	botv,	1	.
CG32202-RA	CGGAAAATGAGCGATGTGTGATGAGAGTAAATGGGATCAAAAAGATAGTAAGAAGGCGCAATCAT	65	+	chr3L	18675452	18675578	18675452..18675477,18675538..18675578	CG32202-RA,	FBgn0052202,	CG32202,	1	.
CG11064-RA	TCGGCCGCCCTAGGCAACGACTATGGAGTAGGAAAATGCACAGCAATTGAATTTGACAATAACCAGTTT	69	+	chr4	1095379	1095448	1095379..1095448	CG11064-RA,	FBgn0087002,	Rfabg,	1	.
CG17657-RA	TCGTCCATCAAGGTGGTCCACTTCGGCGTGGTCTAATAATTCATAGTGCAATTCCCAGGCGTACACCAC	69	-	chr2L	1711718	1711787	1711718..1711787	CG17657-RA,	FBgn0086698,	frtz,	1	.
CG17270-RA	TGGATCTGGATGACGAAAACTCACAGCTGCTCAAGCAAATGACGGGCTTCAAGAGACGACGAGCGAAAA	69	-	chr3R	16642807	16642876	16642807..16642876	CG17270-RA,	FBgn0038828,	CG17270,	1	.
CG4123-RA	CTGGTGCAGCGTCGGTCTGTGCAAGTGGTCAGATGTCCTCGAGAAGTACAAGACCATTGCGGATG	65	-	chr3L	16557133	16557198	16557133..16557198	CG4123-RB,CG4123-RA,	FBgn0026061,	Mipp1,	1	.
CG33088-RA	GCAGACACGCATTTCCTACGATCTACTCACCGAACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGT	69	+	chr3L	15503042	15503111	15503042..15503111	CG33755-RA,CG33756-RA,	FBgn0028377,FBgn0001099,	gdl-ORF39,	2	.
CG8273-RA	GTCACCCAGGATAAGCATCCCGTGTGTGTGCTCAACGAACTGACCTCGAAGAACAAGTGGATGCC	65	+	chr3R	5406342	5406407	5406342..5406407	CG8273-RA,	FBgn0037716,	CG8273,	1	.
CG17060-RA	TCCGCACGGACGAAGCAAAAAACAAAGCAATAGAGCCGGGGTCATTCGCACGTAGGAAACTTACTTATT	69	+	chrX	20124511	20124580	20124511..20124580	CG17060-RA,	FBgn0015789,	Rab10,	1	.
CG6234-RA	GGAGCATCTAAAGGAACAAAGAGTCCAGACAGTTTCCGAGTCCAACCGTCAAGCAAGTCCCACCGAGGA	69	+	chr3R	8477722	8477791	8477722..8477791	CG6234-RA,	FBgn0038071,	CG6234,	1	.
CG7873-RA	GGACCCCATGCGCAGACCCACGTTTGAGACGCTACAATGGAAACTGGAAGACTTCTATACATCTGATCA	69	+	chr2R	1899016	1899085	1899016..1899085	CG7873-RB,CG7873-RA,	FBgn0004603,	Src42A,	1	.
CG12345-RA	CTAACTAACTTAGCAGAGCTTACGAACTTGTTTATACCCCTACTGTCAGCGAATTATGGCAAGCAAGCC	69	+	chr3R	14557106	14557175	14557106..14557175	CG12345-RA,	FBgn0000303,	Cha,	1	.
CG12784-RA	TGTTTGACCGTTTGGATGCGTGGACTAAAAGTGAAGTGAAGCCCGGTGAAATGGGACGCATCTTGGC	67	+	chr3R	11588909	11588976	11588909..11588976	CG12784-RA,	FBgn0038356,	CG12784,	1	.
CG8405-RA	AGTGGCGAGCCTCCAGAAACGTACACAACACAAACCCAATTCCGAAATCGAATCCGAACACAAGCCCAA	69	+	chr2R	11946841	11946910	11946841..11946910	CG8405-RA,	FBgn0034071,	CG8405,	1	.
CG3245-RA	GCGTGAGCCACACCTTCGGTTCAGATGTGGTCAGTGCCTTCTTGCACCGATTCAAATTGAACCTCATTT	69	-	chr2R	17769181	17769250	17769181..17769250	CG3245-RA,	FBgn0025573,	PpN58A,	1	.
CG31840-RA	CGGACGAGCGACATACATGCGAACCAGTACGGGTATGCACGAGTATGTACATCGGTATGTTCATATGTA	69	-	chr2L	14023984	14024053	14023984..14024053				0	no match
CG10406-RA	ATGAAAAGCATAGCAAACTAATATTAACTATGTCCCACAAGTACACGGAGCTGATTAAGGTCGGC	65	-	chr3R	12262166	12262231	12262166..12262231	CG10406-RA,	FBgn0038426,	mRpS33,	1	.
CG4654-RA	AAGACTGGCGAAAATATGTACGAATCGGATGACGAGGACAATGAGTTCAACGGGTACCTGGAGTCGGCC	69	+	chr2R	9114504	9114573	9114504..9114573	CG4654-RA,CG4654-RB,	FBgn0011763,	Dp,	1	.
CG11411-RA	ACCCGGAGCCATGTACTTATTGGCAGTGGTTCAAGCTCGACGCGTCACTTTCTACGAAGTGGTGGTAG	68	+	chrX	1223205	1223273	1223205..1223273	CG11411-RA,	FBgn0004650,	fs(1)N,	1	.
CG12296-RA	TCGCGCGTCAAATGAACCCCCAGGAGTTTAGATAGCCAGGATCTTCGATACAGCTAGCAATTCCATGTT	69	-	chr3L	10975191	10975260	10975191..10975260	CG12296-RA,	FBgn0013469,	klu,	1	.
CG7906-RA	GCAACGGCAAATGTGTGGTCAATTTTCCAGGCCAATGTGAGCTGAGTCAGTGGAACTGCTTCAACACCA	69	+	chr3L	14231020	14231089	14231020..14231089	CG7906-RA,	FBgn0036417,	CG7906,	1	.
CG2304-RD	TGAACGCTGATCGGCAATGAGACGATAATTCAAACGGAGATGATCTACATATGTACGTTAAGTTTATGG	69	-	chr3R	25324967	25325036	25324967..25325036	CG2304-RB,CG2304-RC,CG2304-RD,CG2304-RA,	FBgn0039668,	Trc8,	1	.
CG8877-RA	CCTGCCTTCGCACTACGAACGCGTTCAGATGCTGTTGTCGAACAAGTTCCTTGGGTTCTTCATGGT	66	-	chr2R	8042074	8042140	8042074..8042140	CG8877-RA,	FBgn0033688,	Prp8,	1	.
CG12250-RA	ACCAAGGATTCGGCATACTATATGTACTTGGAGACACGCAAAGGTCCCTGGTACAAGCAAAAGAGTCGT	69	-	chr3R	21418445	21418514	21418445..21418514	CG12250-RA,	FBgn0261287,	ymp,	1	.
CG15593-RA	TCTGGGCTTAAAGTTCAATCTGGTGGCCCTAGTACCCCTGATATTTGCTGGCATATGTCTGCTGCTCAA	69	+	chr3R	2090563	2090632	2090563..2090632	CG15593-RB,CG15593-RA,	FBgn0037417,	Osi10,	1	.
CG7860-RA	GGTGGTGCACCAGGAACCGTTCACACTTTCCACGTAACTAAATTCGGAGTACCTACCTATCCAAGGATT	69	+	chrX	15464239	15464308	15464239..15464308	CG7860-RA,	FBgn0030653,	CG7860,	1	.
CG1844-RA	TCGCGCCGACAGAAGGCTGGTCGTGTATAGCAGCACCCTGAATGACCCAGATATCACGGTTTATC	65	+	chrX	11781928	11781993	11781928..11781993	CG1844-RA,	FBgn0030350,	SelG,	1	.
CG17166-RA	ACCCTTGCAGGAATCCTGTACTCTGCAGCTGCTTAACTTCCATGTTTCCGAGCCACATGTGGTCAACAA	69	-	chr3L	14992060	14992129	14992060..14992129	CG17166-RA,	FBgn0036462,	mRpL39,	1	.
CG31756-RA	TGCTGCTGAACAAGGGATCTATACACTCCGCCTCAGACACGAACATTTGCTACGAATCCGACTGGAAGC	69	.	.	.	.	.	CG8683-RB,	FBgn0031985,	mon2,	1	.
CG3810-RA	GGCCGGTGTTCGCATTCACCCACTTTTGGAAGACGGAGAACTAAGTGAGGAAGCACGTAAAAGGCCATT	69	-	chrX	1799084	1799153	1799084..1799153	CG3810-RC,CG3810-RB,CG3810-RA,CG3810-RD,	FBgn0023511,	Edem1,	1	.
CG3753-RA	GTGATGGAAAGCAGTCAACTTTTGGTTGGGATGCCAATGGTCAATCGAATTTGGAGGAACTGAAGGTCA	69	+	chr2L	4956969	4957038	4956969..4957038	CG3753-RA,	FBgn0031655,	Marcal1,	1	.
CG13924-RA	GCTCCCTTCAACTGAGACAGGGCACTTTCGACCAGGATGACTCCGACCAGAAGAGTCTAACCAATCTGC	69	+	chr3L	1870617	1870686	1870617..1870686	CG13924-RB,CG13924-RC,	FBgn0035286,	CG13924,	1	.
CG14799-RA	TCAGGGCAAATGCAAAGTGCTAAGCTTGACCGGTCAAGGATTCTTTGGAGGAAAATAAAGCATCA	65	+	chrX	1720470	1720535	1720470..1720535				0	no match
CG2708-RA	TCTTTGTGCACTGGCGAAAACTGAAAGCCACAATTCACAGGAGCTGATTGCCAGGGTTTTGAATGCGGT	69	+	chr3R	3861289	3861358	3861289..3861358	CG2708-RA,	FBgn0010812,	unc-45,	1	.
CG8979-RC	CTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTACCACGCAGACGACCAACTCACCACG	65	-	chr2R	7855395	7855460	7855395..7855460	CG8979-RA,CG8979-RC,CG8979-RB,	FBgn0033669,	CG8979,	1	.
CG18247-RA	CTGGAAGGAACGACCCAAAGATCGGCCAACCTTTGTCTATCTCACCGAGTTTTTCGCCCGCGATC	65	-	chr2R	12087276	12087341	12087276..12087341	CG18247-RA,	FBgn0015295,	shark,	1	.
CG10342-RA	TCCAACTCCAGACCTCCGCGAAAGAACGATGTCAACACTATGGCTGATGCCTACAAGTTCCTGCAGGAT	69	+	chr3R	12436578	12436647	12436578..12436647	CG10342-RA,	FBgn0027109,	npf,	1	.
CG15169-RA	CGGCGGACTAGCGGGTGAAAAGTCAGAAAACTCAGGCATTGAAGCCGGTGAAAATGACACAGAATCCCT	69	+	chr2L	18991169	18991238	18991169..18991238	CG15169-RA,	FBgn0032734,	CG15169,	1	.
CG13405-RA	AGGAGATCCATTTAAAGGTTCTCGTGAATAGAGCCATGCACCTCCAAAACTTCGGTTCACCTAGGCGCT	69	-	chr3L	74786	74855	74786..74855	CG13405-RA,CG13405-RB,	FBgn0035097,	CG13405,	1	.
CG7741-RA	GGATGCCCAAAGATGAGACTACCCAGTTTGAACTGTGCACTCGCTTCATTTCCCTTGCGGAAGTGGGAA	69	+	chr2R	7191812	7191881	7191812..7191881	CG7741-RA,CG7741-RB,	FBgn0033615,	CG7741,	1	.
CG16935-RA	GCCACTGGACCCCTCATTTTCAAGGACATTGCATTTAGAGGCTTCTGGATGACTCGCTGGTCCAAGGAG	69	-	chr2R	9748118	9748187	9748118..9748187	CG16935-RA,	FBgn0033883,	CG16935,	1	.
CG4225-RA	GAACAGAGTGGTGGTTCTGATAACGGAGACGCTAGTGCAGAATCGGGATCGGAGAAACGCAGGGC	65	-	chr3R	11679899	11679964	11679899..11679964	CG4225-RA,	FBgn0038376,	Hmt-1,	1	.
CG15256-RA	CCGCCCATGTTGTCGAGCTACACAAGGCAATACTCCCAGCCGTATCCAAATCGTTGTAAGCCCTTTGTT	69	+	chr2L	15550820	15550889	15550820..15550889	CG15256-RB,CG15256-RC,	FBgn0028880,	CG15256,	1	.
CG17024-RA	TCCGAACCGCTTACGTGGATCAGTGTGGCGATAACGCTTTTATAGCACGAAAATGCCAGATGGTGCACA	69	+	chr2L	12453904	12453973	12453904..12453973	CG17024-RA,	FBgn0032437,	CG17024,	1	.
CG17204-RA	AAACTGCATCAGAGAATCTTCAATGATAATCTTGCCCTAATTGATACGCCACTTATTGCCATGGG	65	-	chr3R	16219633	16219698	16219633..16219698	CG43224-RE,CG43224-RG,CG43224-RJ,	FBgn0262869,	mun,	1	.
CG8510-RA	TCTTGAAGTCCGTGAATGCCGATCACAACGGGGAGTCGGTCAATGGAAAGTACTCCTTCGTCGCC	65	+	chr2R	8293721	8293786	8293721..8293786	CG8510-RA,	FBgn0033729,	Cpr49Af,	1	.
CG4281-RA	CTTCCCGCCAAATCGAGAGTGAGATGTCCGGCGAAACCTCTAATCCGTTTCTTTCCTCGTCGCCT	65	-	chrX	1957233	1957298	1957233..1957298	CG4281-RA,	FBgn0025626,	CG4281,	1	.
CG3820-RA	GCTCCAGTGGCTAGTCCCTTTCAGTCAGCTGCAAAAAGTCCAGTTTCGAGTGCAAACATTTTTGGCAGT	69	-	chr2R	18807628	18807697	18807628..18807697	CG3820-RA,	FBgn0010660,	Nup214,	1	.
CG31284-RC	TGCCGGGCAATTCACCACACTAACCACAAAGATCGATGACAATGCTGATCGGATCGAGTTCCTCACCCA	69	+	chr3R	3726292	3726361	3726292..3726361	CG31284-RA,CG31284-RB,CG31284-RC,	FBgn0260005,	wtrw,	1	.
CG12943-RA	CCGCCGTCTAAAGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTATACGCGGGATTCGCCCT	69	+	chr2R	6791952	6792021	6791952..6792021	CG12943-RA,CG12943-RB,	FBgn0033572,	CG12943,	1	.
CG5853-RA	CCAGCTACTCAAACCAGTGCTCTGTGCTTTTGCGACGAGGTTTCATCAAAGCCAAACGAGACACGACCA	69	-	chr2L	9941864	9941933	9941864..9941933	CG5853-RA,	FBgn0032167,	CG5853,	1	.
CG2794-RA	CGGGCGAAACTGTCAAATGGAATCCAGAAACCAAACAGCCACAAACGGAACTGGTTCAGCAAGCGAAGT	69	+	chr2L	565862	565931	565862..565931	CG2794-RA,	FBgn0031265,	CG2794,	1	.
CG10197-RA	AGCGGCCAATACAAGCATATCTCTATAAGAAACGCATAAACAGCAGAACTTAGCCGCAAAATCGATTTG	69	-	chr2R	10660261	10660330	10660261..10660330	CG10197-RA,CG10197-RB,CG10197-RC,CG10197-RD,	FBgn0001319,	kn,	1	.
CG18525-RA	TCAGCCGATCGCATATTCTTCGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCTGGC	65	-	chr3R	11029821	11029886	11029821..11029886	CG18525-RA,CG18525-RB,	FBgn0028984,	Spn5,	1	.
CG33070-RB	ACGATCTTCGGCAAGTACGGTTCCATTGTGCAGAAGAACATCTTGCGTGACAAGCTCACAGGTCGTCCT	69	-	chrX	6979210	6979279	6979210..6979279	CG18350-RF,CG18350-RG,CG18350-RH,CG18350-RI,CG18350-RJ,CG18350-RK,CG18350-RL,CG18350-RM,CG18350-RN,CG18350-RO,CG18350-RA,CG18350-RB,CG18350-RC,CG18350-RD,CG18350-RE,CG18350-RP,CG18350-RQ,CG18350-RR,CG18350-RS,CG18350-RT,CG18350-RU,CG18350-RV,CG14425-RA,CG14425-RB,	FBgn0003659,FBgn0029933,	Sxl,CG14425,	2	.
CG2617-RA	CCGGCGTTCTTGTTTTGATTTTGTGTTTCTTCCTTTTCTTAATTCGAGGACAGTATGAGCCCCCCGCCA	69	+	chr2L	20682380	20682449	20682380..20682449	CG2617-RA,	FBgn0032877,	CG2617,	1	.
CG13860-RA	TGTTTGGTTTTTATGGCTTTTAATTCAATTAAATTGGTTTGCGCTTAAACTTTGGCTGTCTGGTTAA	67	-	chr3R	18140585	18140652	18140585..18140652				0	no match
CG32451-RB	CCTGCAGATCGCATTTAAAGGACCAATCGTTAAATACTTCATTTGATCACACACATTAAGATCAGCTTA	69	+	chr3L	22779698	22779767	22779698..22779767	CG32451-RB,	FBgn0052451,	SPoCk,	1	.
CG12924-RA	CCTGCTAGCCACAATGAATCCAACGAAAGGAGAAGAGTTCGGGTGGTGATTCGCAAACACGGATCGGTG	69	-	chr2R	5726432	5726501	5726432..5726501	CG12924-RA,	FBgn0033450,	Lsm11,	1	.
CG6354-RB	AGCTGTTCGTAGGCGGTCTTAAGGATAACCACGATGAGGAATGCCTTCGTGAATACTTCCTCCAATTCG	69	-	chr3R	22700683	22700752	22700683..22700752	CG6354-RH,CG6354-RA,CG6354-RB,CG6354-RC,CG6354-RD,CG6354-RE,CG6354-RF,CG6354-RG,CG6354-RI,	FBgn0004903,	Rb97D,	1	.
CG6756-RB	CGGAGGAATACTACAAAAAGGCCATGGTATTGGCGCCAACAAATCCTGCACTTATCGTTCACCAGGCCA	69	-	chr2L	12036587	12036656	12036587..12036656	CG6756-RA,CG6756-RB,CG6756-RC,	FBgn0032397,	Tom70,	1	.
CG16969-RA	CCAAATCCGAGTGATGAAATCAAAAGAGCCCTCAAATTGGTTTCCATTGGAAGTTATGCGCGACTCGGC	69	+	chr2L	11990152	11990221	11990152..11990221	CG16969-RA,	FBgn0032390,	dgt2,	1	.
CG41124-RA	ACTCCACTGACCCTTACGAACACGCCAAGTTCTTGCCTTCCCTTCTGAAGACTCCGTTCCGACTG	65	.	.	.	.	.				0	no match
CG32491-RY	CTGACCATCGATGGGAAGCCCTTCACCCTCAATCGTCGGATCAAGGATGTGTGCTACTGGGAGTG	65	+	chr3R	17191859	17191924	17191859..17191924	CG42775-RA,CG42774-RA,CG32491-RY,CG42772-RA,CG42771-RA,CG42773-RA,	FBgn0261843,FBgn0261842,FBgn0002781,FBgn0261840,FBgn0261839,FBgn0261841,	pre-mod(mdg4)-W,pre-mod(mdg4)-AE,mod(mdg4),pre-mod(mdg4)-X,pre-mod(mdg4)-Y,pre-mod(mdg4)-AD,	6	.
CG14059-RA	CCCGGCTGTCGTCATCCGAAGTGGTTAATCCAGATGTGTCCAGAGCGGCGATCCAGATTCACATTGAAA	69	-	chr3L	17024170	17024239	17024170..17024239				0	no match
CG13362-RA	AGCAGCAGACCGTAGTATCGGAGCAAGGGGTCTCCAGTAACAGTCGCATTCAATTTGTTCCCTGCAT	67	-	chrX	644159	644226	644159..644226	CG13362-RA,	FBgn0029531,	CG13362,	1	.
CG12206-RA	GGCAGACCATTGCAATTCGAAACGGATGGCTATTACACATTCCATGTGCGCGAACACGAGAATTTCCGG	69	-	chrX	3366122	3366191	3366122..3366191	CG12206-RA,CG12206-RB,CG12206-RC,	FBgn0029662,	CG12206,	1	.
CG2469-RB	GGCCATGGCCATACTCAAGGATGAGAAATCTACTCTGGAAATTGTGCTGCAAGCTGTCCATGAACTGGA	69	+	chr3L	1310233	1310302	1310233..1310302	CG2469-RB,CG2469-RA,	FBgn0035205,	CG2469,	1	.
CG8206-RA	GTTGATTGTTTCGGGCCGTGAGTAATGCCTAAAAAAGTGATTAAAGGAACGACCAGTTCAAAAGC	65	+	chrX	15634210	15634275	15634210..15634275	CG8206-RA,	FBgn0030679,	CG8206,	1	.
CG12143-RA	GGAAACTCACGTGCGACATTGTGGCAACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGTACGGCC	68	+	chr2R	2927954	2928022	2927954..2928022	CG12143-RA,	FBgn0033132,	Tsp42Ej,	1	.
CG10578-RA	GACGCCAGCTGACATCGTCTTCATCATTCGCGACAAACCGCATTCGCTGTTCAAACGCGAGGGAATCG	68	-	chr3L	5743957	5744025	5743957..5744025	CG10578-RB,CG10578-RA,	FBgn0263106,	DnaJ-1,	1	.
CG7672-RA	TCCCATCTGGATAAGAAACCTTAAAGGAGGACCACTCAGTGAATTATACGGGGATAGTCACTCTATCGC	69	-	chr3R	14194211	14194280	14194211..14194280	CG7672-RA,CG7672-RB,	FBgn0004618,	gl,	1	.
CG10246-RA	CCTTTGGCATTGAGTGCAGTAGTCTTAAGGATCCAGAGGCAGAGTTCAGGGTAATGGGTCGTCGAGCCA	69	-	chr2R	10768194	10768263	10768194..10768263	CG10246-RB,	FBgn0013771,	Cyp6a9,	1	.
CG13271-RA	GGTCGCGCTACCGATCTTTGGCGATCAACAGGGAAATGCTGAAATCATGACAAAATCTGGCTTTGGCCG	69	+	chr2L	16797831	16797900	16797831..16797900	CG13271-RA,	FBgn0040261,	Ugt36Bb,	1	.
CG8290-RA	TTGGAAAAGATTCCCCAACGACCCAAGGTAAAGGTCAAGATTCCGATAAACTTAAGAACGCACGTGCGG	69	+	chr2R	7864021	7864090	7864021..7864090	CG8290-RA,	FBgn0026573,	CG8290,	1	.
CG12254-RA	AACTCACCAGCCTGTGACCTTAAGGTTCTCATCCTACTCTACACGCCCGATCGCAACGCTTTTCTGGG	68	+	chr3R	15836659	15836727	15836659..15836727	CG12254-RA,	FBgn0038760,	MED25,	1	.
CG7266-RC	CCACCAATCTCAACAGGGGCGATCATACGGAGGTGCTGGAAATCGACTATGATCCCACGGTCATTAGCT	69	+	chr3L	15505559	15505628	15505559..15505628	CG7266-RC,	FBgn0000565,	Eip71CD,	1	.
CG32417-RA	AGGTCCTGGACACCTCATCGTTCCGACGCAAAAAGCTCTTCGTCCTGGAATATGACGACGAGTGAGTGA	69	-	chr3L	5770859	5770928	5770859..5770928	CG32417-RA,	FBgn0040298,	Myt1,	1	.
CG14648-RA	AGTTGACAAATCTGTCTCGTGATATTCGCGTCAAGGACTTAAAGTCGGAGCTCCGCAAACGCGAA	65	+	chr3R	231440	231505	231440..231505	CG14648-RA,CG14648-RB,	FBgn0037245,	growl,	1	.
CG9934-RA	TCAAGAATCCATATGTGACTGCCAAACTGGTTGAGGTGATGTTTGTGTTCTCCTTGAAGCCAGCCAA	67	-	chr2L	13015119	13015186	13015119..13015186	CG9934-RA,CG9934-RB,	FBgn0032467,	CG9934,	1	.
CG12880-RA	TCCTGGCGAATCCCGATCACATCTATAGCATCCTGGCCAAATGTTTAACAATTGCGATGGGTGCGTTCT	69	+	chr3R	23517966	23518035	23517966..23518035	CG12880-RA,	FBgn0046258,	CG12880,	1	.
CG12872-RA	CCACCTTGCAGCAGACAACCACTACTACATCCAACTGTTCATACGGCAATTGTCTGATGCCAGCACCTG	69	+	chr3R	23856590	23856659	23856590..23856659	CG34362-RB,CG34362-RD,	FBgn0085391,	CG34362,	1	.
CG2331-RB	GCGAAATCAGATGACATACCCGATTCAATATTCACTTCTTTGATACCATCCTTACTCTTGGTCGCGGAT	69	+	chr2R	5880733	5880802	5880733..5880802	CG2331-RA,CG2331-RB,CG2331-RC,CG2331-RD,	FBgn0261014,	TER94,	1	.
CG8300-RA	GCGCAGCGTCAATCAATCGAGGCGGTACTTAATCGGGTTTAGAGCTATCCATAGCCATGTCAGCGGAGA	69	+	chrX	6999132	6999201	6999132..6999201	CG8300-RA,	FBgn0029937,	CG8300,	1	.
CG13990-RA	CGTCCCGCATTGGAAATCGATGAACTGTCGGCTCCCAAAGCCCAAGAGCTAACCATGTCCACCTATACA	69	+	chr2L	6153274	6153343	6153274..6153343	CG13990-RA,	FBgn0040950,	Muc26B,	1	.
CG5026-RA	GAAGGGGTTCATCGTGGACACTTGGGGTAAGGGCAAATCGAATACGGAAACTGACCTGCACTACTCGCA	69	+	chr3L	8963145	8963214	8963145..8963214	CG5026-RA,CG5026-RB,CG5026-RC,	FBgn0035945,	CG5026,	1	.
CG4623-RA	CCCATGCTAGTGAAACTAATCAGCAAACTAAAGATACACTAAGCCAAAGAATATTAAGTGAAACACACA	69	+	chr3L	5135326	5135395	5135326..5135395	CG4623-RA,	FBgn0035587,	CG4623,	1	.
CG10251-RA	ATTTTCAATCCGATTGTCGGCAATGCGTCCAGCAAGTTTGGTTACCGCCTTCCCATTGTGGTCGG	65	-	chr3R	19523796	19523861	19523796..19523861	CG10251-RB,	FBgn0043005,	CG10251,	1	.
CG5846-RA	CTTTACCACACCACAGAAAAATCTACAGCAACTAGAAGATAGGTGTACCAGTTATATGATGCCCTGTTA	69	-	chr2L	9957208	9957277	9957208..9957277				0	no match
CG5807-RA	TGCAACATAAGCCGCAGTCAATTTGCAGTAGGCGTAGTTTAGAATTTCGTTTCTTGTCGTTCAGAGTGA	69	-	chr3R	20631613	20631682	20631613..20631682	CG5807-RA,	FBgn0027539,	CG5807,	1	.
CG15218-RA	GCAAATGGCGTGGAACTTCGTCAACGACTCTCTCAGCACAGTAGTTTGTCTACAGTGGGAGCCGGAGAT	69	-	chr2L	22129169	22129238	22129169..22129238	CG15218-RA,CG15218-RB,	FBgn0025674,	CycK,	1	.
CG14787-RA	GAACCGTTGGCTCTCAAACAGGGTCTGGAGAATAGGAGTAGGCGTACCGCTTCCCACGAAGAAGC	65	-	chrX	1355409	1355474	1355409..1355474	CG14787-RA,	FBgn0027793,	CG14787,	1	.
CG6289-RA	ACCTGCTGCAAATGGAATCCACGCATTTAAACCTGGAAAACTTTGCGATGACGCCATTTTCCACGTGGT	69	+	chr3L	20335964	20336033	20335964..20336033	CG6289-RA,	FBgn0036970,	Spn77Bc,	1	.
CG11023-RA	ACCGACCAGTGCTGGACGCTCTAGAGAAATATCTACGCGAAGAGTCAATATTCAAGCCCAAAAAGCAGT	69	+	chr2L	9016	9085	9016..9085	CG11023-RB,CG11023-RC,	FBgn0031208,	CG11023,	1	.
CG7917-RA	ACAATCTAGTTCCTTTTGAACAGCTCCTTTTACATTCAATTCAAAGACAACGTTGTGTGCTCGGTCGTG	69	+	chr3R	25835807	25835876	25835807..25835876	CG7917-RA,	FBgn0016685,	Nlp,	1	.
CG1571-RA	GGGATCTGTTGCTTCATCACCGTAAGCCCATTCGTTCCGTGGACTTTAAGGTAGCCATTGCGGATTTGG	69	+	chrX	7971525	7971594	7971525..7971594	CG1571-RA,	FBgn0029993,	CG1571,	1	.
CG7154-RA	ACGAGGGTCCTGAAAGGGTAGTAACAATTGGTGATCTAGTTGGCAAACTGCAAAAGGGAAGCGCACAGC	69	+	chr2L	7784821	7784890	7784821..7784890	CG7154-RA,	FBgn0031947,	CG7154,	1	.
CG10277-RA	TCGCCCGCATCGAACAACATCCTCAATCCGAATTTAAGCGGCTCCTTTAAGGACGAAGACGATATGCCA	69	+	chr3R	2212809	2212878	2212809..2212878	CG10277-RA,CG10277-RB,CG10277-RC,CG10277-RD,	FBgn0037442,	CG10277,	1	.
CG17050-RA	AGGGGCATCTTTGCTCACAGTTACCCATGAATGAGCGGAAGACCAAGCTTCTAAAGCGGATTAAGGGCA	69	-	chr2R	9277437	9277506	9277437..9277506	CG17050-RA,	FBgn0033831,	CG17050,	1	.
CG31791-RA	CGCAGCTCGGAGATGATATACTCCTGGGAAGTGGAAAAGCTTAAGACACGCAATAGGGAGTGGGAGGTC	69	-	chr2L	18672068	18672137	18672068..18672137	CG43339-RB,	FBgn0263078,	CG43339,	1	.
CG5941-RA	ACTCCTTTTGTTTATTGATTAGTCTAAAGAGCAACGAAACAAGGCCTGTAGCTTAAAGTTTGCCAGGGC	69	+	chrX	5933359	5933428	5933359..5933428	CG5941-RA,	FBgn0029833,	CG5941,	1	.
CG15918-RA	TCTAAGCAGGACTGTCAAATAGGCCCCTGTCCAGAGGCATCCATTCCCGGATTCTGGGTGAATCC	65	+	chr2R	13017115	13017180	13017115..13017180	CG15918-RA,	FBgn0034197,	Cda9,	1	.
CG1691-RA	AGCGAAAGCGCCAAAAATAGCCAAGGCAGGGTTTTCTACTGTTGATACTACCTCCACAGCACACCCATA	69	-	chrX	10690932	10691001	10690932..10691001	CG1691-RG,CG1691-RE,CG1691-RH,CG1691-RD,CG1691-RC,CG1691-RJ,CG1691-RF,CG1691-RA,CG1691-RK,CG1691-RB,CG1691-RL,	FBgn0262735,	Imp,	1	.
CG4899-RA	TGAAGCCACAAGGAATACCACCGACTACTACACGAATCAGCCAGACCAAGATGTCCTTTCGCGGCAAGA	69	-	chr3L	16347311	16347380	16347311..16347380	CG4899-RA,CG4899-RB,	FBgn0011693,	Pdh,	1	.
CG3857-RA	TGGGTGAAGCGGCTTGGACTGGGATACGCAGTCCTGAATCATTCAAGTGATTCAAGTTCCAGTGGCAAT	69	-	chrX	1832412	1832481	1832412..1832481	CG3857-RA,	FBgn0023520,	CG3857,	1	.
CG3313-RA	ACGCCCGAACCCTTCAAACCATTAAGAAGATCACATCTCGATACAGTGGCTGCGGTATACGGGCGACTT	69	-	chr3R	7841322	7841391	7841322..7841391	CG3313-RA,	FBgn0037980,	CG3313,	1	.
CG11937-RA	TCTTTTGGGAGAGATGAGATAGCAAAGAAAAGCCAAAACACTAGAACAATCCAGAAGCCAAGTTTTCCG	69	-	chrX	19780935	19781004	19780935..19781004	CG11937-RA,	FBgn0086782,	amn,	1	.
CG11775-RA	TCCAACACTTCCTAACCCTGGGACACAAGCACGAGTCCAGAATTCGGGAACAAATGCTGGAAGTTTCCG	69	+	chr3R	4621781	4621850	4621781..4621850	CG11775-RA,	FBgn0037630,	Ir85a,	1	.
CG15095-RA	CGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCCGCTTTGATCACGATGCTCTCGC	67	-	chr2R	14686131	14686198	14686131..14686198	CG15095-RB,CG15095-RA,	FBgn0010651,	l(2)08717,l(2)08717,	1	.
CG11563-RA	GCAGTTCCGCTTGAAGATTCGCAGATTTATGTCGATTCCGGAGCAGTTTAACGTTTACCTGGAGCAGAA	69	+	chr3R	27563488	27563557	27563488..27563557	CG11563-RA,	FBgn0039868,	CG11563,	1	.
CG7170-RA	CCACAACTCCGAGTGCTCCGGATACTATGGAAGCGTGGGAGACAACATCCTCTGTGTCAGGACTCC	66	-	chr3L	8386144	8386210	8386144..8386210	CG7170-RA,	FBgn0035887,	Jon66Cii,	1	.
CG11897-RB	AAGCACCCGTGTTAAAGGATCTTAACTTCACTATAGAACCGCGCGAAAAAATAGGAATTGTGGGGCGCA	69	+	chr3R	24989414	24989483	24989414..24989483	CG11897-RB,CG11897-RA,	FBgn0039644,	CG11897,	1	.
CG3850-RA	TTTCCCAGCTCTTGTCACCACACCTAGATTACTATTTAACGTGATTAAAGACTGTTGTAATTGAA	65	+	chr2R	8818086	8818151	8818086..8818151	CG3850-RA,	FBgn0033782,	sug,	1	.
CG2125-RA	TGGGCATGCCAAATGCGAAAGCTTCCATCACCAGTCTCAAAAATATATGAACACTGACATTGGCTCCAA	69	-	chr4	69199	69268	69199..69268	CG2125-RA,CG2125-RC,CG2125-RB,	FBgn0004859,	ci,	1	.
CG14866-RA	TCGGAGCAGCTGATCTACTATCTGATGGCCGGAAACAATCAGAAGGAGGTGAAGGATCCCTGTCCCG	67	+	chr3R	11143242	11143309	11143242..11143309	CG14866-RA,CG14866-RB,	FBgn0038315,	CG14866,	1	.
CG15781-RA	GCCACAGAAGCGCCAACCGATCTGACGACAACTGCCGGTGCAACGGTGGCAAAAGAGCGCCAAAC	65	-	chrX	5453873	5453938	5453873..5453938	CG33980-RA,	FBgn0053980,	Vsx2,	1	.
CG11737-RA	GGCGCTGCTCTACATCTATCGTACTGGCACCACCAAGGATTCCATCTTCAACATCCTTCGCATTTTCGT	69	+	chr3R	4345841	4345910	4345841..4345910	CG11737-RA,	FBgn0037592,	CG11737,	1	.
CG11876-RB	CCCATAGCCCATTTTTAGTTAGATAATAGCACTTAAAACCCAAAAAATAACACCTACAGCCGGCA	65	+	chr3R	24938871	24938936	24938871..24938936	CG11876-RB,CG11876-RD,	FBgn0039635,	CG11876,	1	.
CG3161-RC	TCGACTTGAAGCAACGCATACATATAACGAGCGCGCATAACATTCAGATTCATCTGTGCAAAACGCCGA	69	-	chr2R	2519716	2519785	2519716..2519785	CG3161-RC,	FBgn0262736,	Vha16-1,	1	.
CG30126-RA	CTTGGCAAGCACGATTAAGGCGCTTTATCACCCGCAACAACGGCAGCAACACGAACGACAAGCAC	65	-	chr2R	14916670	14916735	14916670..14916735	CG15113-RC,CG15113-RA,	FBgn0263116,	5-HT1B,	1	.
CG17321-RA	TGAGCTCCACACTGCTTGTCCACATGGTGCTATATGCGACTGAATACACATGGGTATCCAAGCACTCCA	69	+	chr2L	18853833	18853902	18853833..18853902	CG17321-RA,	FBgn0032719,	CG17321,	1	.
CG6414-RA	GGTTCGTGCGAACATTGCATCATTTGGTGGTGATCCGAACAGTGTTACGGTCTTTGGCGAGAGCGC	66	-	chrX	3864695	3864761	3864695..3864761	CG6414-RA,	FBgn0029690,	CG6414,	1	.
CG17300-RA	TGGGCATCATGGAAGATGGCTACTACAGCAGTGGAATCACCATCGGTATCCTGACCACATTTGCTGTGA	69	-	chr3L	13079890	13079959	13079890..13079959	CG17300-RA,	FBgn0036345,	CG17300,	1	.
CG15304-RA	CGAAGACCGATAGACCTCGATAGACTCAGTTGTATAACCTCTGCTCGCAAATATTTTTTACAGGCAACT	69	+	chrX	10354779	10354848	10354779..10354848	CG15304-RA,	FBgn0083167,	Neb-cGP,	1	.
CG10443-RA	TGCCAGGTCCACAGAGCTAAAATCTCATCGACCCTGCGTTCGTTGCATACTTATTTCGAACTCTACGCA	69	+	chr2L	19730181	19730250	19730181..19730250	CG10443-RA,CG10443-RB,CG10443-RC,CG10443-RD,CG10443-RE,	FBgn0000464,	Lar,	1	.
CG9071-RB	GGCATGTCGCTGTTCGGAAATGTCAAGCTCCAAGGTGCTCTCGATGACATGGTGAACTTCCAGACCTTC	69	+	chr2R	20801697	20801766	20801697..20801766	CG34405-RG,CG34405-RH,CG34405-RI,CG34405-RJ,CG34405-RK,CG34405-RL,	FBgn0085434,	NaCP60E,	1	.
CG31601-RA	CCTAGAAATATCGTTCGGCATGAACAACATGGACAACGATCCCTACTACACACAGAATGAGCCGGAGGT	69	-	chr2L	22041540	22041609	22041540..22041609	CG31601-RB,CG31601-RC,	FBgn0051601,	CG31601,	1	.
CG1575-RA	TCATGGCCGCTCTAGTCCGTTCTGCTCCTGAGATAGTCAGTCACTTGGATAAGCTGCAGATCACGGG	67	+	chrX	8012828	8012895	8012828..8012895	CG1575-RA,	FBgn0029999,	CG1575,	1	.
CG11885-RA	AGCTCGGCAAGATTCCCGGCATCTACAACGTGCACTTCGATGTCAAAAAGGACGAAAGAGTGGTTCCCT	69	-	chr2L	421170	421239	421170..421239	CG11885-RA,	FBgn0031253,	CG11885,	1	.
CG31484-RA	TGGAAAAACCCCTATCAGTAAGAGTCACTAGAACTATAGGTTTATTTTTAAAAATAATCAGCTCCTTTA	69	+	chr3R	2426601	2426670	2426601..2426670				0	no match
CG32190-RA	AGGCCCAACTAGAGGATGTGTGGGAGAAGCAGGACCACATGGACAAGAACGACTTTGATCCGAAGACAT	69	-	chr3L	17792168	17792237	17792168..17792237	CG32190-RA,	FBgn0052190,	NUCB1,	1	.
CG7390-RA	TGTACAGGGCTAAAATCGAGGGCGAGATATTTGCATCGTTCATTCTGCCGGTTGAGAACAAACCGCAGG	69	-	chr3R	10572636	10572705	10572636..10572705	CG7390-RA,CG7390-RB,	FBgn0038257,	smp-30,	1	.
CG1048-RA	CGGCATTCAGCAGTCTTCAGCTAATCGAACTAGAAAGGGAGTTCCATCTCAACAAATATTTAGCCCGAA	69	-	chr3R	2569518	2569587	2569518..2569587	CG1048-RA,CG1048-RB,	FBgn0004054,	zen2,	1	.
CG31025-RB	CCGCCAATCCCTACGTGAGAATGAAGCCCGTTCAGTTTCGGATCGTCAAGAATCCGCTGCTGAAG	65	-	chr3R	25952308	25952373	25952308..25952373	CG31025-RB,CG31025-RA,	FBgn0051025,	CG31025,	1	.
CG5994-RA	ACGGGGTTAATTTCAAGCAGACATTTTCCCAACATGGTTTACATACACTTCCCCAACAATTTAACCGAA	69	-	chr3L	8593807	8593876	8593807..8593876	CG5994-RA,	FBgn0017430,	Nelf-E,	1	.
CG15371-RA	GCGGAGTACTCGCGATTTGCTAGCGAAACGGGTCGGAGTTTTCCTGGATTCGAAAGTTTCCTGCG	65	+	chrX	9121930	9121995	9121930..9121995	CG15371-RA,	FBgn0030108,	Gr8a,	1	.
CG7314-RA	TGAGCTGCCCGTCTACGACTTTTGCAAGCTGCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCA	69	+	chr3L	11715443	11715512	11715443..11715512	CG7314-RA,CG7314-RB,	FBgn0036199,	Bmcp,	1	.
CG4086-RA	CCCTTGACCAGTGGACCACTGAGCTGAAAAAGAGGAACACGAAATTCATGGGCGGAAAACAGCCAAGTC	69	-	chr3L	16604075	16604144	16604075..16604144	CG4086-RA,	FBgn0004465,	Su(P),	1	.
CG7062-RA	CACTGCCAAACGAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGTGACTGCGGGACGG	66	+	chr3L	8290390	8290456	8290390..8290456	CG7062-RA,	FBgn0015793,	Rab-RP3,	1	.
CG15699-RA	TCGTGAAGATCGATTGCTCCGAAGAGGATGAGCCCGAGCTGCTGCCCTTCAAATTCGAGTGGTAA	65	-	chr2R	11875070	11875135	11875070..11875135	CG15699-RB,	FBgn0034056,	CG15699,	1	.
CG14676-RA	CCTGCTGAAAACCACCTATATGTCGGACTACTCGCCCAAAGACTACCAGTCGCTCATCAGCCAGCG	66	+	chr3R	1673393	1673459	1673393..1673459	CG14676-RA,	FBgn0037388,	CG14676,	1	.
CG1213-RB	TTCTTCGTCCTCTTCGTGGTGATGGAGACAAAGGGGCTTAGTTTGCAGCAGATCCAGGATCGCCT	65	+	chr3R	1672049	1672114	1672049..1672114	CG1213-RA,CG1213-RC,CG1213-RB,CG1213-RD,	FBgn0037387,	CG1213,	1	.
CG2137-RA	GCAGTCCGATACACTGCACCATACCCGTTTCAAGAACCATGTAATCCAGCTAGGACCTCGAAACATGCT	69	+	chr2R	3424703	3424772	3424703..3424772	CG2137-RA,	FBgn0033190,	CG2137,	1	.
CG15881-RA	CAATAGGTGGAACAAATGCAATGACTAGTTTTAGGTGGATTTATTAGCAGAAGTCTCATGGAACTGCCA	69	+	chr3L	19799884	19799953	19799884..19799953	CG15881-RB,CG15881-RA,	FBgn0036909,	CG15881,	1	.
CG13914-RA	GCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAGCTGCTCATGTCTAGCAGTGACCAGCGG	66	+	chr3L	1332031	1332097	1332031..1332097	CG13914-RA,	FBgn0035209,	msd1,	1	.
CG9262-RA	CCATGGCCATTATCATCTTTGCCACCGTCATGTTCTACGCCGAGAAGAACGTCAATGGCACCAAC	65	-	chr3L	19566154	19566219	19566154..19566219	CG9262-RA,CG9262-RB,	FBgn0005564,	Shal,	1	.
CG5190-RA	CTTTGCGGAGAACCGGATGAATGATGAGCCCTTCGATCTGCACTATTGCAACACCCAGATGGACAGCA	68	+	chr2R	14339533	14339601	14339533..14339601	CG5190-RA,	FBgn0034351,	CG5190,	1	.
CG31649-RA	TCGCGAGTTCCTCCTGGATTTGGAGAGTCACAAGTCCATCATATCGTCGTTGAATGTGGTCGGTGACCA	69	+	chr2L	5203283	5203352	5203283..5203352	CG42768-RD,CG42768-RG,CG42768-RH,CG42768-RI,	FBgn0261836,	Msp-300,	1	.
CG10537-RB	ATTTTAACTAGCGATATGAAAATGCAGAGGCAGGAGAGTTTATGGTTTAATACAATTGCGGGAAGGACA	69	-	chr3L	9143782	9143851	9143782..9143851	CG10537-RA,CG10537-RB,CG10537-RC,	FBgn0004244,	Rdl,	1	.
CG8725-RA	AGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCACCCTGGAAAAGGTCAATCCGC	69	+	chr2R	3860355	3860424	3860355..3860424	CG8725-RA,CG8725-RB,	FBgn0027054,	CSN4,	1	.
CG1316-RA	CGGGACTGATCGACGTCTACCTTCTGCCCAACAAGAACTGTGGCTACGTCAAGTATGCGGAGGTTGAGA	69	+	chr3L	4285641	4285710	4285641..4285710	CG1316-RA,	FBgn0035526,	CG1316,	1	.
CG13151-RA	TGCGGTCTTAGCTCCCAAGTAGATGCAGTCCAGGCATATGAGCAAACCTCAGAAGCCTGTCAGCAGTTT	69	+	chr2R	8404103	8404172	8404103..8404172	CG13151-RA,	FBgn0033750,	CG13151,	1	.
CG8785-RA	TCCTCTGGCGCAAGATCAGTCACAAGTTCAGTCCCGAGAAGCACAATATTACACAGATTCTGCTGCGCA	69	-	chr2R	8528799	8528868	8528799..8528868	CG8785-RB,CG8785-RA,	FBgn0033760,	CG8785,	1	.
CG11552-RA	ACGAGGAGGGGAACTACGACTATGCTGGACTTCATACCAGACCTATGGAGAAGGTTCCTGCCAAGGACA	69	-	chr3L	15034865	15034934	15034865..15034934	CG11552-RA,	FBgn0036465,	Rpn12R,	1	.
CG2087-RA	CCAAGGATTTCGCTGTCAATTACCCGCAGCAGTACGACTTGCTCCAGCAAATGCTATCCGCCCAG	65	-	chr3R	1285281	1285346	1285281..1285346	CG2087-RA,	FBgn0037327,	PEK,	1	.
CG9669-RA	GCTGATTAGCCTGTGCGCCTCCATTTTCCTGGGATTCGGCATTGTTTTCCTGCTTCTAACCGTCGGTAT	69	-	chr3L	16837734	16837803	16837734..16837803	CG9669-RA,CG9669-RB,	FBgn0036667,	CG9669,	1	.
CG31107-RA	CGCCAGAGGCACTGTGACTCCTGGTCAACTGAAATCACGGCTAGAGACTTTGAAGCGCTTATCCATCAA	69	-	chr3R	20867603	20867672	20867603..20867672	CG42283-RC,CG42283-RF,	FBgn0259178,	5PtaseI,	1	.
CG13094-RC	ACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCACCATCATACGGGCTCGAAACGATCTGGAGA	69	-	chr2L	8492967	8493036	8492967..8493036	CG13094-RA,CG13094-RC,CG13094-RD,	FBgn0032048,	Dh31,	1	.
CG33455-RA	CCTACCCCGTATGGCGTTTCAACCGAAACTGACTCAAACCACCGCTTACGCACCATCCGAATATCAGCT	69	-	chr2R	12840424	12840493	12840424..12840493	CG34415-RC,	FBgn0085444,	mute,	1	.
CG9689-RA	CCGGTGTTTACAAAAGAAATCTTGAATTTAGCATAACTGGAACCCAAAAACTTGTTGTGACTACA	65	+	chrX	9776912	9776977	9776912..9776977	CG9689-RA,	FBgn0030159,	CG9689,	1	.
CG9731-RA	GGCTCGAGTGGAGTGTACCAAATCGCGGATAGGGTCTATACCACCAGCAAGATGTTTCTACGCGATGGC	69	-	chr3R	4688306	4688375	4688306..4688375	CG43140-RN,	FBgn0262614,	pyd,	1	.
CG17100-RA	TGCCCCTGAACGTGGACTATAATGCACTGGTGCCCTTCCTCAACGGTATGGATCTGCTCGAGAAGAG	67	+	chr3R	6224737	6224804	6224737..6224804	CG17100-RA,CG17100-RB,CG17100-RC,	FBgn0259938,	cwo,	1	.
CG32079-RA	GCTGGTGGCAATTCAGTATCCGGATTTTGGCCTCTTGCTATCCTTGGTGGGATCCTTTTGTTTGGCCC	68	+	chr3L	11020179	11020247	11020179..11020247	CG32079-RB,	FBgn0052079,	CG32079,	1	.
CG4021-RA	GCGAGATTACTGAGGAACAGCCAACTACCACACACGAGTACCAGCCGCGTCTGAACGAGATAGCC	65	+	chr2R	17660924	17660989	17660924..17660989	CG4021-RA,	FBgn0034659,	CG4021,	1	.
CG10384-RA	GGGAGGATCAGCGAGAGTCTCGAGGAGATTAGCGAATATTTCTAGGCGATGTTTGCGTAGTTGATGCGT	69	+	chr2R	18358957	18359026	18358957..18359026	CG10384-RB,CG10384-RC,	FBgn0034731,	CG10384,	1	.
CG1411-RB	ACCCGATTCGAAGTAGAGCACATCGATCATGCCACGTGAGACAAAGAGTGCTTGGGAGCAAATTCGGCA	69	+	chr3R	1404674	1404743	1404674..1404743	CG1411-RA,CG1411-RB,CG1411-RC,CG1411-RE,	FBgn0023023,	CRMP,	1	.
CG13106-RA	GGATGGACTTTGATGTGGACACACAAAAGACTTTGAAGTTCCTCATCATGCGCTCGCAAAAGCCCTTGG	69	+	chr2L	9113051	9113120	9113051..9113120	CG13106-RA,	FBgn0032096,	Or30a,	1	.
CG15412-RA	GCCATTCTGACCAGTTCTTTGAAGGCCTTCCTCTGCAATTCCACCGATCTGAAGAGACTGGCGGTG	66	-	chr2L	3374155	3374221	3374155..3374221	CG15412-RB,	FBgn0031528,	CG15412,	1	.
CG33184-RA	CTCTCCCGGTTCATCACCATCAAGCCCGTCGATTTCTAAGCCAATTGTATTGTTCAATTCCGCACACGT	69	+	chr2R	9843065	9843134	9843065..9843134	CG30481-RA,CG33155-RA,CG33155-RC,CG33155-RD,	FBgn0050481,FBgn0053155,	mRpL53,CG33155,	2	.
CG9778-RA	TTTGTCTAAAGCAGAGGTCTGTGTTTGTGATTTGTTTTTACAAGGTCGATGCCAAATGACGACTGCTGT	69	-	chr3R	141598	141667	141598..141667	CG9778-RA,	FBgn0261086,	Syt14,	1	.
CG6106-RA	CGTCGTCACCTTCCCGTCTTACCGATACACTTTCCCAGGGGTATAGCTCTTTTCTGGCATATGATTCAA	69	+	chrX	18255719	18255788	18255719..18255788	CG6106-RA,	FBgn0030914,	CG6106,	1	.
CG2033-RD	TACGTGTACTCCGAGTTTTGTTCAACAAAATTGTATTTAACTCTCTTTTATTTCCTCTATTTGCAGCGG	69	-	chrX	13231569	13231638	13231569..13231638	CG2033-RD,	FBgn0010198,	RpS15Aa,	1	.
CG3315-RA	CCGCACACCAAACTGATGTTGATTTTGCAGCGAGCTTGATACACCATGCAGACTGAGCAAAGGGACGC	68	-	chrX	5204773	5204841	5204773..5204841	CG3315-RA,	FBgn0029752,	TrxT,	1	.
CG4115-RA	TTGCTGCATGATATACTTACTTATGAACCCTATCCTGGTAACCACCTTCCAATTCTCTGCGCTCTGTTC	69	+	chr3R	8188823	8188892	8188823..8188892	CG4115-RA,	FBgn0038017,	CG4115,	1	.
CG10543-RA	CGGAAACAGGAAAACAGGAAACGGAATACGGAACAAGTTCGCTTAGATTGTAAGTTTAGGGGGGACGGT	69	+	chr2R	16893855	16893924	16893855..16893924	CG10543-RA,CG10543-RD,	FBgn0034570,	CG10543,	1	.
CG3359-RD	CGGCTACGATGATCAGTTCGACGATCTGGACAACGTGACCATCTTTGCACCAACTGACAAGGCTCTGCA	69	-	chr3R	7811574	7811643	7811574..7811643	CG3359-RB,CG3359-RC,CG3359-RP,CG3359-RD,CG3359-RE,CG3359-RF,CG3359-RG,CG3359-RH,CG3359-RI,CG3359-RJ,CG3359-RK,CG3359-RM,CG3359-RN,CG3359-RO,CG3359-RL,CG3359-RQ,	FBgn0260745,	mfas,	1	.
CG12002-RB	CACATCTCTGGATCAGTCGTGGTGCAGTACCCACATAGAGTCCCCTTTCAGGCCACACTCCATCG	65	-	chr3L	2610212	2610277	2610212..2610277	CG12002-RB,	FBgn0011828,	Pxn,	1	.
CG7449-RB	GCCAAACGTTTGCCACAAGACCAATTCGTTCGCAGACCCCTCACCACAGAAAAACCGAAAGATACACCC	69	+	chr2R	10928642	10928711	10928642..10928711	CG7449-RA,CG7449-RB,	FBgn0029082,	hbs,	1	.
CG33175-RA	GCGCCACAAGTGGTGATGCGAAATATGCGCCAGTTCATGAGCGGCATGAAGAACTATCTGGTGAAGCAT	69	-	chrX	10386147	10386216	10386147..10386216	CG34414-RA,CG34414-RG,CG34414-RI,	FBgn0085443,	spri,	1	.
CG11502-RB	TCGATTCTCGACTGGTTTTTCTCGGCGGATGTATCTCAAAGATGCTTCTGTATGGGAAGGCCGAATTGT	69	+	chr3R	8128250	8128319	8128250..8128319	CG11502-RC,CG11502-RB,	FBgn0003651,	svp,	1	.
CG4007-RA	TCCTGGACTTGTTCCCGATCAGGAAGATCTACTAGTCGCTGTTAAGATGCTAAAGGACGACGCCA	65	+	chr2R	9049359	9049424	9049359..9049424	CG4007-RA,	FBgn0020391,	Nrk,	1	.
CG1139-RA	CGTGACGGTTTACCCAACCACACTGGAATTAACGACCCCAACAAAATCAGCGAATGGCAGTAACGATGA	69	+	chr3L	1972088	1972157	1972088..1972157	CG1139-RA,	FBgn0035300,	CG1139,	1	.
CG6217-RA	CGCCGTGCGTTCAGGTTTTGGGTCAAAACAAAGGAGTTTGCCGTGACGATGTGGTTGGTGGATTG	65	-	chr3R	5949291	5949356	5949291..5949356	CG6217-RA,	FBgn0001321,	knk,	1	.
CG15804-RB	ACGCTTTCTCAAGTTGCAGAAGGAGATCCGTACCACCTGTCGAGATTTGGCTATGGGAATCAAGGGCAT	69	-	chr3L	1759895	1759964	1759895..1759964	CG15804-RC,	FBgn0013811,	Dhc62B,	1	.
CG14280-RA	AGTCACTCAGGTGGACGACAATTTGGCACCCAATAATTGTTTGCAATATTTCCACGATGCTGAGGGCGT	69	+	chr3R	15084990	15085059	15084990..15085059	CG14280-RA,	FBgn0038695,	CG14280,	1	.
CG11785-RA	GGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGCAAGTTCAGCTTCATGTCCGAGGTGTACGAT	69	+	chr3R	20865437	20865506	20865437..20865506	CG11785-RA,	FBgn0045866,	bai,	1	.
CG9945-RA	TCCGGTAAAGCGATCACATAGCTCGGATCATGACAAAAAGCCCCTGAGAAGATCACGACGTTTGGCGAA	69	+	chr2R	16508162	16508231	16508162..16508231	CG9945-RB,CG9945-RA,	FBgn0034527,	CG9945,	1	.
CG14270-RA	TCTGCTAAGGGGTGCCACAAATCGAATGATCACAGTGCCGGTAGAACTTCAGAATCCCGTGTCCGC	66	-	chrX	3378985	3379051	3378985..3379051	CG14270-RA,	FBgn0029665,	CG14270,	1	.
CG31677-RA	ACCAGTTAGCTGCCGACGTTGTGTGGTTATCAATATGGCCAATATTCCAATCCACAGCACATCCGCACA	69	-	chr2L	20603951	20604020	20603951..20604020	CG31677-RA,	FBgn0051677,	CG31677,	1	.
CG33214-RA	TCGGCCCATCCATGACCCCATTCCGAAACCCAGAAGTATACTTTCACTCAACCCTGTCTGCCTTTCGAT	69	.	.	.	.	.	CG33214-RA,	FBgn0053214,	CG33214,	1	.
CG32102-RA	ACGTGTCCAAGGTTCACTCTGGATCGCAATGGATGCAATTTGGCCACTTCACTGCACATTTGACCGGAT	69	-	chr3L	12462299	12462368	12462299..12462368	CG32102-RA,	FBgn0052102,	CG32102,	1	.
CG30267-RA	GGGGCTCACAGTAGGGGAAGAGCTAGAAGATGAAGAAGGAGCTTATCCAGAAGGAACGGCCAGCG	65	+	chr2R	18643843	18643908	18643843..18643908				0	no match
CG1531-RB	GCCTCGAATTGATTCCCAGCATATTAGCGGATCCCATTGCTCTGCTGCTCAAGTTTATCCTGCTGGCGC	69	+	chrX	7844730	7844799	7844730..7844799	CG42593-RA,	FBgn0260970,	CG42593,	1	.
CG3437-RA	GGTGCGTCGGGAGATCGTGATCCAGATGTACGATGCCAGTCAGAAGATTTGCCTGTTAGAGCCCATTGT	69	-	chr3L	9450267	9450336	9450267..9450336	CG3437-RB,	FBgn0035998,	CG3437,	1	.
CG33483-RA	CCCATGGGGATTACCTTTTCCACTCCGACTGGTATGCATACGGAATTAATCGCGCAACCGTAGATTTTT	69	-	chr3R	26726456	26726525	26726456..26726525	CG33483-RA,CG33483-RB,	FBgn0053483,	CG33483,	1	.
CG31464-RA	AGCCAAGGACACACTGGATGACCATCAGCAAGTGGTTAGTGGACGCTTGGAGATGTTTTTTGGAAGCCA	69	+	chr3R	4117224	4117293	4117224..4117293	CG31464-RB,	FBgn0051464,	CG31464,	1	.
CG13217-RA	GGTGGACTTGGCAGCTTCAAGAGCCTATTCGGCAAGAAGTTCCGCTAAAGCAACAGCACTCACCCAAAA	69	-	chr2R	7123750	7123819	7123750..7123819	CG13217-RA,	FBgn0033590,	CG13217,	1	.
CG33205-RA	TGAGCTCAAGGAATCCTCTGGGCGAACCACAATCACCAATTGTAAATTGTTCCCCGATATCGTGGCACA	69	+	chr3L	9826799	9826868	9826799..9826868	CG33205-RB,CG33205-RE,CG33205-RC,CG33205-RF,CG33205-RA,CG33205-RG,CG33205-RH,CG33205-RI,	FBgn0053205,	CG33205,	1	.
CG5625-RA	CCAGCTTGCAGCCATAACGCTCATCATGTCCACTTTTGAACAAATGTCCTGCTTTGGCGAGGAGAACG	68	+	chr2R	18076139	18076207	18076139..18076207	CG5625-RB,CG5625-RA,	FBgn0034708,	Vps35,	1	.
CG15422-RA	GCAGGCGTACGAGTATCAGTACCAGTATCAGCAGCCCTACAACAATCCACCGTATCCGCAGTGGTGA	67	+	chr2L	4005303	4005370	4005303..4005370	CG15422-RA,	FBgn0031579,	CG15422,	1	.
CG8772-RB	TGGTCTCCATGTTCAATTTCCATCGCTACGACAACCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGA	69	-	chr2R	8559429	8559498	8559429..8559498	CG42708-RF,CG42708-RD,CG42708-RA,CG42708-RE,CG42708-RC,CG42708-RB,CG42708-RH,CG42708-RI,	FBgn0261625,	CG42708,	1	.
CG6113-RA	TTTCCGGCAGTATGATCACGGATGGCTCAGAAACCACTGGATCTACGGAACCATTGACCCGCCATC	66	+	chr2L	10531103	10531169	10531103..10531169	CG6113-RA,CG6113-RB,	FBgn0032264,	Lip4,	1	.
CG1135-RA	GCACTGCCAAATCCTTGCAAAACCATTGGCTTCTTCTCAAGCAGTACACCCTGTTGCCGGATCAGTCAG	69	+	chr3L	4041822	4041891	4041822..4041891	CG1135-RA,	FBgn0035489,	Rcd5,	1	.
CG32463-RA	TACCAGATGGTCTGCCACTACGATCGTTTCTCTGCGACATCCGGGAGATTGAGCACTACGCAGGTCTC	68	-	chr2L	2238429	2238497	2238429..2238497	CG32463-RA,	FBgn0052463,	CG32463,	1	.
CG40263-RA	TGGAGGGGTTGCCACAGAATTGTTTGGAACCAAGTGCGTATTTGGATGGTCTCAGTTAGCAACAGCTCT	69	-	chr2RHet	1293019	1293088	1293019..1293088	CG40263-RF,CG40263-RG,CG40263-RH,	FBgn0058263,	CG40263,	1	.
CG15828-RB	CTTGAACAACGAGCCCTACGACGAGTACACCATGTCCAGTGGCGTGATCTCCAATGAGACGCAGC	65	+	chr2L	9654387	9654452	9654387..9654452	CG15828-RC,	FBgn0032136,	CG15828,	1	.
CG14298-RA	AACGAGGGTAACTTTTGCAGCAGGAAGGATCAGACCAAGGTCGTTACACGCTGGTACTTCGACAAGGGC	69	+	chr3R	14702485	14702554	14702485..14702554	CG14298-RA,	FBgn0038654,	CG14298,	1	.
CG11348-RA	CTTCTCACACGATCGCAGCTAGCAAAAAGATCGACTTAATCGTAGGCTCCGAAGATCCGAAGATCCGGA	69	+	chr3L	4435882	4435951	4435882..4435951	CG11348-RA,	FBgn0000038,	nAcRbeta-64B,	1	.
CG40175-RA	CTGGATGGCTGAGGAAGTGGCGTGGTCGTTGGGCGGAGTGGCATCATAATGCTAATGATATTTGCCTTA	69	-	chr2L	20266652	20266721	20266652..20266721				0	no match
CG3041-RA	CACATTTGTTCTTAATCGTCCATAATCTGGATGGAGCCATGCTTCGCAATGTGAAGGCACAGGCG	65	+	chr3R	9792079	9792144	9792079..9792144	CG3041-RA,	FBgn0015270,	Orc2,	1	.
CG40485-RA	AGGAGATGCGAGATTTCAAGACCAAAGTCAAGGTCACGGTGAGTACGTGTTTAATGAATGCACTACAAA	69	-	chrX	22363568	22363637	22363568..22363637	CG40485-RA,	FBgn0069973,	CG40485,	1	.
CG13060-RA	GCACCACTAAAGCGTTCAAATTGTTTGTTTGTTAACCAATTATATGAAAATAAAATAAAATTCTGAAAA	69	+	chr3L	16313471	16313540	16313471..16313540	CG13060-RA,	FBgn0036606,	CG13060,	1	.
CG31072-RA	TACCCTTCGTATGTAAAGGAGAATCCCCAACCTAACCCGTACCTATAGCTATAGTTAAATGCGGCCTGC	69	-	chr3R	22668489	22668558	22668489..22668558	CG31072-RB,CG31072-RA,CG31072-RD,	FBgn0051072,	Lerp,	1	.
CG1594-RA	CCCCAAAAACCACTTGACGCAATCCTTGGCTTAAAGCGCTATCGGAAGAATCACATTGACCCCCAACCA	69	-	chrX	11255675	11255744	11255675..11255744	CG1594-RA,	FBgn0004864,	hop,	1	.
CG40188-RC	TGACGTCATTGCATGCAGTTGTTAAACTTCGGGACCATTTAATTAGATACTCGACTCATAAACAAAAGG	69	+	chrU	2232960	2233029	2232960..2233029	CG40188-RC,	FBgn0058188,	CG40188,	1	.
CG15477-RA	GCATCGCTTGCCAAAATCCGCATTAAATTTATGCACTTTTGTTGTTACGGGCAAACGTAGCCGGAATGT	69	+	chr2L	20544798	20544867	20544798..20544867				0	no match
CG7341-RB	TGCTTCTGAAAGACGGAAAACGGTTGGAAGGGATGCTATGCTCTGGAAGTCATCTGGGACACAGCCTCA	69	+	chr3L	18113163	18113232	18113163..18113232	CG7341-RA,CG7341-RB,	FBgn0036777,	CG7341,	1	.
CG4027-RA	AAATCGTCCGTGACATCAAGGAGAAGCTGTGCTATGTTGCCCTCGACTTTGAGCAGGAGATGGCC	65	+	chrX	5797352	5797417	5797352..5797417	CG4027-RB,CG4027-RA,CG4027-RC,CG4027-RD,	FBgn0000042,	Act5C,	1	.
CG2692-RA	CACACCATCACACACAGATGGGTGGCTACGATTTGGTCCAAAGTGCGGCTCAACACGGATTTCCC	65	-	chr2R	20928907	20928972	20928907..20928972	CG2692-RA,	FBgn0001147,	gsb-n,	1	.
CG2977-RA	GTGCCCTTTGTCCTGTTCTTCCAGGCTCTCTGCTTCTACATTCCCCATGCCCTGTGGAAGAGTTG	65	-	chrX	6886742	6886807	6886742..6886807	CG2977-RB,CG2977-RA,	FBgn0027106,	inx7,	1	.
CG31064-RB	CAATCTGCAGGCCAAAGTAGAGTCCTTAACGACCACAAATGCCCTGATGAAAGAGGATTTGGCAATCGC	69	-	chr3R	23058516	23058585	23058516..23058585	CG31064-RA,CG31064-RB,CG31064-RE,	FBgn0051064,	CG31064,	1	.
CG11661-RC	TGAAACGTATGCAGACTCTTTGATACGATTTTTTGCTGACGAAATTGTTAAGAGCATTGTGTGAAAGTA	69	+	chr3L	16960663	16960732	16960663..16960732	CG11661-RG,CG11661-RH,CG11661-RC,CG11661-RB,CG11661-RA,CG11661-RF,CG11661-RI,	FBgn0010352,	Nc73EF,	1	.
CG4446-RA	GCCATACTGTCCATCCTGAATCCTCTGCTTGCACCGGGATTGCTTCTTTTGGGTGTGAATTTGGGAGC	68	+	chr3L	9355523	9355591	9355523..9355591	CG34456-RA,	FBgn0085485,	CG34456,	1	.
CG9098-RA	GCCCAGCTCTGTACCACACCTGTATTGCTCCTTGGGAGTCGAAAGCGGATGACTTTGGCATGACCATTA	69	-	chr2L	6008219	6008288	6008219..6008288	CG9098-RA,CG9098-RB,	FBgn0031762,	CG9098,	1	.
CG6340-RB	AACAACTTTTTGTTTGTGTTGAGAAAATTTTTTGTTTTTTTGATTTCAAATAAACGTTGCAACAG	65	+	chrX	15380567	15380632	15380567..15380632	CG6340-RB,	FBgn0030648,	CG6340,	1	.
CG40467-RA	TCGGGAACTACAACAGCTGTTATTAGTACCGCCAGTTTTCTCAGTTTTTGTGGAGCTTTGTCCGCTACA	69	-	chr3LHet	722496	722565	722496..722565	CG40467-RB,	FBgn0069977,	CG40467,	1	.
CG3420-RA	GGACTCGGCCAAAACAATTCCCAGTAACCTGCTCGAGGATAAGCAAACGGCCGTTCTGCAAAAGGAGAA	69	-	chr2R	2644264	2644333	2644264..2644333	CG3420-RA,	FBgn0033100,	CG3420,	1	.
CG33479-RA	GGGGATACGGACAGTGCAATACTTTTCGGGAACACATCTGCGTGGAATGTACCTTCGGATCAGCAGCCA	69	-	chr2R	5485536	5485605	5485536..5485605	CG42600-RD,	FBgn0261016,	clos,	1	.
CG3140-RA	AGCTCGACACATTGCTGGACAAGAGGAAAACCAACTTGGATGCTGTCATCGAGTTTGCCATCGACGACA	69	+	chr2R	19912720	19912789	19912720..19912789	CG3140-RA,	FBgn0022708,	Adk2,	1	.
CG1973-RA	AGGATTGAGAGTCGGGGACTCAATCGATATCAGCGAGGAGTGGATACGAGGTCCTTTTCCAATCCCACT	69	+	chr3R	25579125	25579194	25579125..25579194	CG1973-RA,	FBgn0260990,	yata,	1	.
CG32108-RA	ACAATTCGAGCACAGGACCCTTGATGGAACCCTAACAACGACACGGGAAATGCATACCAATTGCCAGCA	69	+	chr3L	12817140	12817209	12817140..12817209	CG34017-RA,CG42588-RB,	FBgn0260965,	CG42588,	1	.
CG15669-RB	AATCCGACCAATCTTGCCATGCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACG	65	+	chr2R	17399260	17399325	17399260..17399325	CG15669-RB,CG15669-RA,CG15669-RF,CG15669-RJ,CG15669-RK,CG15669-RD,CG15669-RE,CG15669-RI,CG15669-RC,	FBgn0043070,	MESK2,	1	.
CG40494-RA	GAGCCTGTTGGTTGGGGACCTGTACATGGGAGTTCATGGATTGGAAGGACTGGAGCAAGCGAACG	65	+	chrX	34833	34898	34833..34898	CG00000-RA,CG00000-RB,CG40494-RC,	FBgn0025836,	RhoGAP1A,	1	.
CG8628-RA	CCACTGAACTCGCCAACAAGTTCACCAAGAAGCCCACGGATGCCGAGTTCTTGGAATTCTACGGTCTCT	69	+	chr3L	7124253	7124322	7124253..7124322	CG8628-RB,CG8628-RA,	FBgn0250836,	CG8628,	1	.
CG17510-RA	ACAAATGACGTTAGAAAGGGAATTATGATTTTGGAGGAACTGGCTCGTACGCATCCAGATGGAAGGCGT	69	-	chr2R	1491865	1491990	1491865..1491916,1491972..1491990	CG17510-RA,CG17510-RC,CG17510-RD,CG17510-RE,	FBgn0039969,	Fis1,	1	.
CG1715-RA	ACACCATCCTGGAGAAGGAGTACGCCAATGCTGTAGAAAATGTGCACAAGCGATTCGTCAGCACCG	66	-	chr3R	26878693	26878759	26878693..26878759	CG1715-RA,	FBgn0010808,	l(3)03670,	1	.
CG5733-RA	ACCACACAGAAACCGTGTTCAAGGACTATCGGGTGGAGAACGTTGACGAAATCATGAACCTCCTGCGC	68	-	chr2R	14052331	14052399	14052331..14052399	CG5733-RA,	FBgn0034310,	Nup75,	1	.
CG7736-RD	TCCAGGGACAGGATGAGCAGCTAGACATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCTCGC	66	+	chr2R	7108939	7109005	7108939..7109005	CG7736-RE,CG7736-RB,CG7736-RD,	FBgn0037084,	Syx6,	1	.
CG14111-RA	ACGACTTCCACAACGATCGTCTTCCCGCCTTATCAGAGGATGAGTACAACAACCTGAGTGAGGACGCCA	69	+	chr3L	13372596	13372665	13372596..13372665	CG14111-RA,	FBgn0036350,	CG14111,	1	.
CG1634-RB	ACGCTCTGGTCACACAATTCAAGCCCGATTCAAAGAACTATGCCCGCATTTTGGCTTACAATGGACGCT	69	+	chrX	8441308	8441377	8441308..8441377	CG1634-RA,CG1634-RB,CG1634-RC,CG1634-RD,CG1634-RE,CG1634-RF,CG1634-RG,	FBgn0002968,	Nrg,	1	.
CG15369-RA	GCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTGGAGCTGATCGATAATCAGGGTGCT	69	+	chrX	9111200	9111269	9111200..9111269	CG15369-RA,	FBgn0030105,	CG15369,	1	.
CG8735-RA	GTCTAAGTTTGTTCGTTTCTAGTTAAATTGCGGATCATACACCATGGGATTTGTGTTATCCAAGCTGCG	69	-	chr2R	4487316	4487385	4487316..4487385	CG8735-RA,	FBgn0033309,	CG8735,	1	.
CG32182-RA	ACGATTTTCGAGCTTGATACTGCAATTGTGGTCCAACAGATACGCCAAGCTATTTGATTTTCGCCGGGA	69	+	chr3L	17751410	17751479	17751410..17751479	CG32182-RA,	FBgn0052182,	CG32182,	1	.
CG13350-RA	CCAGTGTGTCGCACAACTTCTTTGTGGTCGCTGTATCCGAGAAACGTCAGATAGTCCAGGCGGTCC	66	-	chr2R	9868804	9868870	9868804..9868870	CG13350-RA,	FBgn0033890,	Ctf4,	1	.
CG17440-RA	AAGAAAAATTCCCTGAAACTTAATTGACGGATTTGGAATTGGACTTTAGTTGTCAGAAAGATTGGTGCG	69	-	chrX	9163829	9163898	9163829..9163898	CG17440-RA,	FBgn0030120,	CG17440,	1	.
CG7300-RA	GGCAATGCCAAAATCACTGGATCTTCGTCAACTGGTGCACACCATACTGGATCTGTTCAGGCTGGTTCT	69	-	chr2L	10696611	10696680	10696611..10696680	CG7300-RB,CG7300-RC,	FBgn0032286,	CG7300,	1	.
CG17470-RA	TGGGTAGTTAGTTTCCGCACTCGAAACACCGACAAAAACCATGTTTCGCAATCTTTCGATGCTGAGGAA	69	-	chr2L	20643075	20643144	20643075..20643144	CG17470-RA,	FBgn0032869,	CG17470,	1	.
CG4122-RG	CGGCTTGGCCACAGAGAACGTGGTCTTTCACCTAAAAGTTAACGAGCATGTCTTTGGATTGCCTCGCTT	69	+	chrX	401558	401627	401558..401627	CG4122-RD,CG4122-RC,CG4122-RB,CG4122-RG,CG4122-RH,CG4122-RI,	FBgn0004648,	svr,	1	.
CG32064-RA	AATCACCGATGAAATGGGATATGATTTAAGCAATGATGGTCGAGGACTGGCGAATTCCTGTTTGGCGGC	69	+	chr3L	10485598	10485667	10485598..10485667	CG32064-RA,	FBgn0052064,	S-Lap4,	1	.
CG9839-RA	GGGAGGAGAGCTCAAGTCCAATCCCACAACTGCCGAAGAAATGGAAATCTTTATGGCGCTTTCCCTGCT	69	-	chr3R	4630589	4630658	4630589..4630658	CG9839-RA,	FBgn0037633,	CG9839,	1	.
CG2078-RA	TCCCCGGGTGACCACTCCCAGCATTCGGATTCAGATCAACGACAAGGATGTCACTGATATGCCAAACTA	69	-	chr2R	5191747	5191816	5191747..5191816	CG2078-RA,	FBgn0033402,	Myd88,	1	.
CG9378-RA	CCAAGAAGTATGTTGCCCTTAGTTAAATGGGATATCTCAATAAAAATTGTTATTTTGCAGCCGCT	65	-	chr3R	5340736	5340801	5340736..5340801	CG9378-RA,	FBgn0014023,	Rlc1,	1	.
CG9577-RA	CCGTAAAGACAACCAAGGAGAGCCTCGTGTACTCCCTGGAGCACACCAATCAAGAGGGCTTGGAT	65	+	chrX	20061777	20061842	20061777..20061842	CG9577-RA,	FBgn0031092,	CG9577,	1	.
CG3725-RA	TGCTGGCTGACGACAACTTCTCCTCCATCGTGTCTGCCGTTGAAGAAGGTCGCGCTATCTACAACAAC	68	-	chr2R	19817803	19817871	19817803..19817871	CG3725-RE,CG3725-RB,CG3725-RA,CG3725-RG,CG3725-RD,CG3725-RC,CG3725-RH,CG3725-RF,	FBgn0263006,	Ca-P60A,	1	.
CG15779-RA	CGGTGGCCACTTATGAACTAGTGCTCATTCAGTTTCACGAGGATAAAAAGACCTGGGACTGCTCACCCT	69	+	chrX	5576393	5576462	5576393..5576462	CG15779-RA,	FBgn0003747,	Gr5a,	1	.
CG14633-RA	GGAACTCTATAGAACAACGAACTCCGGCTAATAATTGCGAAGTGGACCCGATGGATGCCACTGGGT	66	-	chrX	775646	775712	775646..775712	CG42248-RD,CG42248-RG,	FBgn0259100,	CG42248,	1	.
CG33317-RA	GCCGAGACTGGTCGTATTCCCGGCAAGGAGTTATACGCAGACGTGTACAAGCAGAAGCCGACAAAGATT	69	+	chr2L	20901292	20901401	20901292..20901298,20901338..20901401	CG33317-RA,	FBgn0053317,	CR33317,	1	.
CG31641-RB	GCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGAGGCCATCATCAGTGACATGAAGGAGAAGCT	69	+	chr2L	6122117	6122186	6122117..6122186	CG31641-RC,CG31641-RB,CG31641-RA,CG31641-RD,	FBgn0051641,	stai,	1	.
CG3588-RB	GCACCTTCAGCGTGATCTATGACTGGATCAGCGGATTTTTCAACTCCTGCGTCTCACCCTGCACCTTG	68	+	chrX	2817973	2818041	2817973..2818041	CG3588-RE,	FBgn0025643,	CG3588,	1	.
CG31314-RA	GCGACCCCGCGAGGTGTGCCAAAAACTAAACCAGCACAATTAACTACAGTGAAATACGCTTGCACTGCC	69	-	chr3R	10494024	10494093	10494024..10494093	CG7649-RD,	FBgn0051314,	Neu3,	1	.
CG15292-RA	ATCCCTCGAAAATCTTGCAGCCAGTCAAGGCGATGAGATGGAGACCTACGAAGCGAGCAAGGGAC	65	-	chr2L	14127086	14127151	14127086..14127151				0	no match
CG15250-RA	CCCTCTGAACTATTGAACAAATCTCTAGTGACGGTCACCAATATCTCAAAGTCGTTGTCTCGCCT	65	-	chrX	9861063	9861128	9861063..9861128	CG43386-RB,	FBgn0263216,	CG43386,	1	.
CG30403-RA	GATAGGCCGTTGGATGCTACACCCTCTTCCTTATTTACCGTTCTGCCAGCACCTATGCCCGTGGA	65	-	chr2R	17597992	17598057	17597992..17598057	CG30403-RB,	FBgn0050403,	CG30403,	1	.
CG40239-RA	AGCGGCAGAGTTGATTGCACTTCCTTGCTAAAAACCAAAGTGAGCGCATACAAGAAGGGACAGTTTGGT	69	.	.	.	.	.				0	no match
CG11451-RA	TCCTTCACGGACATCCTACGCCCCGAACTGCATCTCTTCAATGAAAACATTCAGTATCTGCCCAAGGGA	69	+	chr3L	20799648	20799717	20799648..20799717	CG11451-RA,	FBgn0037025,	Spc105R,	1	.
CG5820-RC	ACAAGGCCTTCGACACGTTCGTGAACAAGGAACTGAAGCCAGTCCTGAAGACCGATGGTATCCAGG	66	+	chr2R	18215521	18215587	18215521..18215587	CG5820-RA,CG5820-RB,CG5820-RC,CG5820-RD,	FBgn0013272,	Gp150,	1	.
CG3376-RB	AGGTCCCTCTGTATCGCCCTATTACGATCTGAACCCCGGCTATCGTATCTACTACGTGGATGGCGATCA	69	+	chr2R	20151350	20151419	20151350..20151419	CG3376-RA,CG3376-RB,CG3376-RC,	FBgn0034997,	CG3376,	1	.
CG3095-RA	GCTACCCCAAAGACTGCCGGACAACACATTTATGCTCAATATCACAAACAACAAGATAACCAGCCTGGG	69	+	chrX	1566113	1566182	1566113..1566182	CG3095-RA,	FBgn0001189,	hfw,	1	.
CG31535-RA	CGCGTTTCTTAGCTTGTTTAATCGATGATTTCACTTGGCCCGTGTATCGATTTAAGCCGATTGAAGGGC	69	-	chr3R	776891	776960	776891..776960				0	no match
CG15820-RA	GCGGAGAATCGAGGATCCCAGCAAGTTGACCAAGGACATAGAAGGTTATTTGCTGGAGGAGAGGCGA	67	-	chr3L	2173522	2173589	2173522..2173589	CG15820-RA,	FBgn0035312,	CG15820,	1	.
CG15444-RA	GCACGGGAAGACTGTCGAAGAACGTCAAGCAAATGACCGGAAAGGCGCCTTCGTTCTATCTCAGATCCT	69	-	chr2L	4468698	4468767	4468698..4468767	CG15444-RC,CG15444-RB,CG15444-RA,CG15444-RE,CG15444-RF,	FBgn0011603,	ine,	1	.
CG31028-RB	GGTGGAAATCACCCAGCAATCGGAGTATGATGTCAGCAATGTGGAGGTGCAACTTAAGGGGCTTCAGGA	69	-	chr3R	25994184	25994253	25994184..25994253	CG31028-RC,CG31028-RD,	FBgn0051028,	CG31028,	1	.
CG6476-RB	GTTTGATTGGCTGGGGTCAGATCTTCGGAGGCAAGACAATCACACCCGTTCTGGACAGCCAGGTG	65	-	chr3R	11084100	11084165	11084100..11084165	CG6476-RB,CG6476-RC,	FBgn0003600,	Su(var)3-9,Su(var)3-9,	1	.
CG11837-RA	GGCGGCTACCTTTAAGGTGACGTCCGTTTTGGAGATGTTGGAGAAAAACTACAAGCTATACCGCTCACT	69	+	chr3R	24876075	24876144	24876075..24876144	CG11837-RA,	FBgn0039627,	CG11837,	1	.
CG3895-RA	CTTCACCACTTTCGTTGCCCCTGACATTGCCCTTGCCAATTGCAATAGCTCCCACTGTGTCACTG	65	-	chrX	2011204	2011269	2011204..2011269	CG3895-RA,CG3895-RB,	FBgn0004860,	ph-d,	1	.
CG17378-RA	AAACAAATTGGAATCGCATATCAAAATTAAGTTTGGAATCAAAACCAGTTACAAGAACATCCGTACTGC	69	+	chr2L	6778130	6778199	6778130..6778199	CG17378-RA,	FBgn0031858,	CG17378,	1	.
CG12203-RA	AATCGAAAAGCGCTTGTGTTCCAAATTTTACGTAATTCGTATTTTGAAGCCGATTTCTGCCGTGT	65	+	chrX	19386484	19386549	19386484..19386549	CG12203-RA,	FBgn0031021,	CG12203,	1	.
CG6052-RA	TCGGATTCGCCAAGCACATGGATAAGCAAACGAAGCATTACAGTGGCGGAAATAGGCGAAAGTTGAGCA	69	-	chr3L	17717921	17717990	17717921..17717990	CG6052-RA,	FBgn0036747,	CG6052,	1	.
CG9766-RB	GGCGGCTTTGGATGGTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACAGACAGGAGGCAAA	69	-	chr3R	95383	95452	95383..95452	CG9766-RB,CG9766-RA,CG9766-RC,	FBgn0037229,	CG9766,	1	.
CG9716-RA	GCAGTTGAGGGCTGGTCAAAGTTCTTGCACCCGATGAAATTGAGGAGGTGAATTTGAAGGTGGTGGAGC	69	-	chr3R	4468945	4469014	4468945..4469014	CG9716-RA,	FBgn0037601,	Cyp313b1,	1	.
CG32152-RA	GCTGAACCTTGTGTGGCCCTAACGACCGGCAAAAAACTTCTGACGATGGCTCATTGCGTTCTCAGACTA	69	-	chr3L	16135751	16135820	16135751..16135820	CG32152-RA,	FBgn0052152,	CG32152,	1	.
CG6043-RD	TGCAGGTCACATAATACGCTCAGCTAATCAATTTGTCGATCAAGGTTACCAGAATTACCCACCACAAGC	69	+	chr2L	13274646	13274715	13274646..13274715	CG6043-RC,CG6043-RD,CG6043-RG,	FBgn0032497,	CG6043,	1	.
CG3062-RA	CTGAGTGGGCGGTACAAGTTTGTTGACTTTCCGCGTGACCTGTGCAATTGTCAGCGAGAGAACCG	65	-	chrX	4536022	4536087	4536022..4536087	CG3062-RA,	FBgn0025612,	CG3062,	1	.
CG12399-RA	CAGTCGGTGAACAATGGATTCGAGGCCGTCTACGAGCTGACAAAGATGTGCACGATCCGGATGTCG	66	-	chr2L	3147571	3147637	3147571..3147637	CG12399-RA,	FBgn0011648,	Mad,	1	.
CG31421-RA	TGGCGAACAGTATGAATCCGGCACTGACGAGGACTTTATCAAGCCTTTGGATGAGGATACCGTGGCTGT	69	-	chr3R	16596973	16597042	16596973..16597042	CG31421-RA,	FBgn0046689,	Takl1,	1	.
CG7381-RB	CGCACTCGATTTGTTCCAAGAATATTTGCCTATGTCGCCAGGGTTACTATGCCCGCAATGGAAAATGTT	69	-	chr3R	8795148	8795217	8795148..8795217	CG7381-RB,CG7381-RA,CG7381-RD,	FBgn0038098,	CG7381,	1	.
CG7351-RA	GGGGTACATCTCACATGCTCACAACAAACTGGTCGTGTCGAAGCAAAATCCATTCCCCTCAGTGTCCCT	69	+	chr3L	11620694	11620763	11620694..11620763	CG7351-RA,	FBgn0036184,	PCID2,	1	.
CG2224-RA	ACCACGAGAACGCATTCATCCTGTACTTGCGCTACATGACCCTCTTCATCGAGAAGATCCGCCAG	65	-	chr3R	26284420	26284485	26284420..26284485	CG2224-RA,	FBgn0039773,	CG2224,	1	.
CG6050-RA	GATCCGAGAGCTGCTTACCGAGATGGGCTATGATGGTGACAAGATCCCTGTGGTAAAGGGCTCGG	65	+	chr2R	9395913	9395978	9395913..9395978	CG6050-RA,CG6050-RB,	FBgn0024556,	EfTuM,	1	.
CG4032-RA	AGCTGACCAACGGCAATAGTACTGGGTCCGGATTCAAGGCTCAGCTGAAGAAAGTCGAGCCCAAAAAG	68	-	chr3L	16617037	16617105	16617037..16617105	CG4032-RA,CG4032-RB,	FBgn0000017,	Abl,	1	.
CG11436-RA	CCCAGCACATTGCCGAGAACACAGCAGGTGCGAAACTTTATAAGTTGCCTAGAGAACCTAACGAAGAAA	69	-	chrX	4444868	4444937	4444868..4444937	CG11436-RA,	FBgn0029713,	CG11436,	1	.
CG4040-RA	CGAAGCAAAAGCAACATCGAGACCAATTTCACCAGTCAACCAAAGATAATCTCGACGACAAATGCCGCG	69	+	chrX	8946728	8946797	8946728..8946797	CG42388-RE,CG42388-RF,CG42388-RC,CG42388-RD,CG42388-RG,	FBgn0259734,	CG42388,	1	.
CG4033-RA	GCAGAGGACTTGCCATTTACGGAATCTGGTTTGATTCCAGACATTGTGTTCAATCCCCACGGCTTCCCC	69	+	chr2L	407171	407240	407171..407240	CG4033-RA,	FBgn0003278,	RpI135,	1	.
CG1327-RA	CGCTTCTTTCGCTCTGCAATTTGCCAACCAACCTCAAACGCTCGCCAAATGGCTTTCAAGCTCGTT	66	-	chr3R	2521822	2521952	2521822..2521828,2521892..2521952	CG1327-RA,	FBgn0004781,	Ccp84Ac,	1	.
CG10374-RA	ACCGCATCATCACAATCTCACGGCTGGACAAGGTTAAAACCATCTCCAAAGAGGAAGCTGAATCTCTTT	69	+	chr3R	19591904	19591973	19591904..19591973	CG10374-RA,CG10374-RC,CG10374-RB,	FBgn0039114,	Lsd-1,	1	.
CG6363-RA	TTGGCTCAATGCTCAGCTACTCTGCGTTGGATCAGCAGTCCATGCAGAACCTACTCACGCACGTG	65	-	chr3R	11102405	11102470	11102405..11102470	CG6363-RA,	FBgn0027378,	MRG15,	1	.
CG9684-RA	CCGCACAACCCGAATGCAGCACAGGTTTCCTATCTGGCTGAGGTTTTGAAGGTCCATCAGTCAGTTCAT	69	-	chr3R	4185894	4185963	4185894..4185963	CG9684-RA,	FBgn0037583,	CG9684,	1	.
CG11670-RA	GCCACCAAATCACCATCGCAACTTCCACAACATCTTCCTGAACACCGAAAGCAAAGTGGACGGGGAGAA	69	+	chr3R	8868211	8868280	8868211..8868280	CG11670-RD,CG11670-RE,	FBgn0038114,	CG11670,	1	.
CG4038-RA	GGTCCACCAGAGAGAGTCATCCCCTTGGGCAACTATGTTTACTCCTGCCAAAACGACCTTGTGTGCAAA	69	-	chr2R	16984144	16984213	16984144..16984213	CG4038-RA,	FBgn0011824,	CG4038,	1	.
CG1980-RB	GGGCAAGCAAAATTTGTCGATGTCTCTATTCACGATCCGCAACACATTCGTTCTGCACTCGTCAGTCCA	69	+	chr3R	2885291	2885360	2885291..2885360	CG1980-RA,CG1980-RB,CG1980-RC,	FBgn0019828,	dj,	1	.
CG14696-RA	AGCAAGGTGAACTTCGTCTTCGACAGCAATCCTTTGGGGCTCTATCAAGCCGGTCAGCTTATCTCCG	67	-	chr3R	6710483	6710550	6710483..6710550	CG14696-RA,	FBgn0037853,	CG14696,	1	.
CG15604-RA	GGAGCAGTACAAGCGTAACATTGGTTCCAAGTCCAGTTCGCGTGAGAACATCTGCGACAATGCCGC	66	-	chrX	15845569	15845635	15845569..15845635	CG42252-RD,CG42252-RE,CG42252-RF,CG42252-RG,	FBgn0259110,	mmd,	1	.
CG1372-RA	GGTGCGGTCAACAGCCTGGAATTGGAACATGAACACGAGCAGAACGGTCACTTTCACTGGCTGATG	66	+	chrX	14093145	14093211	14093145..14093211	CG1372-RA,CG1372-RB,	FBgn0004649,	yl,	1	.
CG15030-RA	GATTGATACGATTTGGAGTGCTCCCAGGGCCGCCGACATCCGCTTCCCTCGATCCGCTCCTGAAT	65	+	chrX	15109823	15109888	15109823..15109888				0	no match
CG2025-RA	TGTTATAAGCATTGACGGCGATAACATGAGAAAGCTATCCGTGCAGGTGATTGGCCATCGACCAG	65	-	chrX	11759508	11759573	11759508..11759573	CG2025-RA,	FBgn0030344,	CG2025,	1	.
CG32054-RA	TGTGCATCGAGTCTCCGGTAATCATGCTGGCCAAGAACAATGACGAACAGGGAGCTATTGACGCACTGA	69	-	chr3L	10086656	10086725	10086656..10086725	CG32054-RA,	FBgn0052054,	CG32054,	1	.
CG2083-RA	AGGCCTAATCTTAAGAATCCACACAAATCAATCCTGTTCCGGGTTTGAATTACGATTGAATCGGGCGGA	69	-	chr3L	2788425	2788494	2788425..2788494	CG2083-RB,	FBgn0035376,	CG2083,	1	.
CG6543-RA	TGATGAAGGAGCTGTCCACCGCATTGCAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTT	66	-	chr2R	9741233	9741299	9741233..9741299	CG6543-RB,CG6543-RA,	FBgn0033879,	CG6543,	1	.
CG4078-RA	TCTGCCATTCCCACCGCTAAAGGATCCCAAGGTGATACTGAAACGTCGCTACCTGGAGGCGAATC	65	+	chrX	5644102	5644167	5644102..5644167	CG4078-RA,	FBgn0029798,	CG4078,	1	.
CG9593-RA	GGTGGATGGCGTCTATAGGTTTCTGGTTCCGGAGCGCAATGAAGTCCAGCGTGATTTGTACGAGCGTTA	69	+	chr3R	11628600	11628669	11628600..11628669	CG9593-RB,	FBgn0038365,	CG9593,	1	.
CG11624-RB	CCTTTCTGCATTGTCAAAAGGGAAGACATCAGAAAAATTCTAAATTTCAGTAAACGCCATGACATAAAT	69	-	chr3L	3899317	3899386	3899317..3899386	CG11624-RC,CG11624-RB,	FBgn0003943,	Ubi-p63E,	1	.
CG6197-RA	GTTTGTGATCCCCGCATCACTGCAGACTTTTGGCAAACTTGGAAGGAGTTCGAAGTGCGTCACGG	65	+	chr2R	9483427	9483492	9483427..9483492	CG6197-RA,	FBgn0033859,	CG6197,	1	.
CG9164-RA	TGTTGTGCTTCATCGCTCACCAAAGCTCAACTCATCCGCAACTTATCCTTTGGTCACGTTGAGGTCCCA	69	-	chrX	15274810	15274879	15274810..15274879	CG9164-RC,CG9164-RB,	FBgn0030634,	CG9164,	1	.
CG15382-RA	TGCGGCTCTCTTGTTGCTCCGCTACCAATACGATCGACAAGTGTGCAATAACATTATAACCTACACGGA	69	+	chr2L	2155895	2155964	2155895..2155964	CG15382-RA,	FBgn0031393,	CG15382,	1	.
CG15470-RA	CCCTGCTGACAAACCTGGGCATCTGCATGCTGCTTCTCGCCTACACACTTCTGGGTAAGCGCTAA	65	+	chrX	4789817	4789882	4789817..4789882				0	no match
CG9650-RA	TTCTGCGGAAAGGTGTTCAAGAACTGCTCGAATCTGACAGTGCACCGCAGAAGTCACACCGGCGA	65	+	chrX	7133386	7133451	7133386..7133451	CG9650-RG,CG9650-RH,	FBgn0029939,	CG9650,	1	.
CG31926-RA	GCCGAAATCACCAATGCACCAGAGACCGCATTTCTGAAGTCCCAGCTCGATGGAATTTTGGGATTGGG	68	+	chr2L	1496301	1496369	1496301..1496369	CG31926-RA,	FBgn0051926,	CG31926,	1	.
CG31369-RA	GCCCGTTGGCATCTATACAAAGAAATACGAATGGGCCTCACGTATGCCGACAAGCGACAATGGAAATGT	69	-	chr3R	4225205	4225274	4225205..4225274	CG31369-RB,	FBgn0262729,	CG31369,	1	.
CG1641-RA	TGGAGCAGTGATATCATAGTGTAGCTATGTGTCGCAGGAACGGATCCCTGACTAGTCCAGCATTAGCCA	69	-	chrX	11215695	11215764	11215695..11215764	CG1641-RA,	FBgn0003411,	sisA,	1	.
CG10504-RA	CCCGGGATGCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCATACCAAGCTGT	69	+	chr3L	21211161	21211230	21211161..21211230	CG10504-RA,	FBgn0028427,	Ilk,	1	.
CG6093-RA	TGGCGAGTGCTTCAGTAGCCAGGACACCATACTCAAGAGCAGGATCTTTGAACGCCTGTTTCCCACAAA	69	-	chr2L	10974826	10974895	10974826..10974895	CG6093-RA,	FBgn0000018,	abo,	1	.
CG9550-RA	AGTCCGCCTTCGAGTGGATAAGCGAAATGATGGTGGACGATATTGGGGCTGTACAGGACGTGTGC	65	+	chr2L	6498180	6498245	6498180..6498245	CG9550-RA,	FBgn0031826,	CG9550,	1	.
CG15546-RA	GATCAGGACCCGTACGACCATCTGGAAAGTCGAGTCCGAAGATTGCAACTAACCCGAAGTCCCGG	65	-	chr3R	26701110	26701175	26701110..26701175	CG15546-RA,	FBgn0039807,	CG15546,	1	.
CG33253-RA	CGTGCTGATCATGGTGCTAACCTTTCCCATCTCGGTGTTCATCTGCTTCAAGGTGGTCTCCGAGTACGA	69	+	chrX	19079771	19079840	19079771..19079840	CG33253-RA,	FBgn0030992,	CG33253,	1	.
CG11851-RA	TGGTGCTGGAGATGCTTTTAAGGCAGCGTGATTGGAAGACCTTTGTTCAGTGGACACTGATATCGGGCG	69	+	chr3R	21048289	21048358	21048289..21048358	CG11851-RA,	FBgn0039293,	CG11851,	1	.
CG9411-RA	CTCGGAGAACAGCTACAGCGCCTCACAGTTCCACTCCCAAGGACTTCCATTGCCGCAACAGGCTC	65	-	chrX	14367652	14367717	14367652..14367717	CG9411-RA,	FBgn0030569,	CG9411,	1	.
CG1138-RA	ACAGCACCAACTGACTCAGATGCAATCCGTCCGAAGATCATCCAATCTGGCCAAAAAACTGGTACGGGA	69	-	chr3R	2423164	2423233	2423164..2423233	CG1138-RA,	FBgn0037456,	CG1138,	1	.
CG15446-RA	ACCCACCGAAGTGAAGCATCCGAACAACCCCGTTAATCGTCGTCCCGTTTCGTATCGCCAAATGG	65	-	chrX	20972841	20972906	20972841..20972906	CG15446-RB,CG15446-RC,	FBgn0031155,	CG15446,	1	.
CG8676-RB	TATGTATGCATGTGTCTATATGTGAGTACGTACCATACAAATTCCTGTCCCACCAGAAAAATCACACGC	69	+	chr2L	21258828	21258897	21258828..21258897	CG8676-RB,CG8676-RD,	FBgn0261239,	Hr39,	1	.
CG40000-RA	TGCTGATCAATCTGAGAATGACACACTTACCGCAATAGTAAATCGATTTTGGGAAATTGAAGAAT	65	+	chr3LHet	245154	245219	245154..245219				0	no match
CG15862-RB	TCACTTGCAGGCTTCTTAGGATTTTAATTTGTAACCATGTTTCTTTCTAATTGAGCAACTCTACGGACA	69	-	chr2R	5883817	5883886	5883817..5883886	CG15862-RA,CG15862-RB,CG15862-RC,	FBgn0022382,	Pka-R2,	1	.
CG9878-RB	CTGGCACCCATTAACCCACATTTCCGCTTAACCAATGTGCATTTTTGAAGCGCTACGATTGTTAGAGGT	69	-	chr2R	17577781	17577850	17577781..17577850	CG42497-RA,CG9878-RB,CG9878-RA,	FBgn0260223,FBgn0027360,	CG42497,Tim10,	2	.
CG9821-RA	CGCCCTTGGTAACTGCACATTCCAACAGTATTGCCAGCAGTACAAATAACGCCCAATTCCTGAGCTCCT	69	-	chr3R	4644195	4644264	4644195..4644264	CG9821-RB,CG9821-RA,	FBgn0037636,	CG9821,	1	.
CG31005-RA	AGCCTGCTCTACACTGAAAGAAAGGCAAATGAAAGATATAATGCAGAAATTTGCTGGCTAGTTAATCAA	69	-	chr3R	27061897	27061966	27061897..27061966	CG31005-RA,	FBgn0051005,	qless,	1	.
CG41096-RA	AGTATGTGCACTACTTTATGTGGGCAGTTCATCAAGTCAGATGATGCACTTCTATGAGAGGCTGGAGAA	69	+	chrU	248041	248110	248041..248110				0	no match
CG4570-RA	GCGGGGATCAGACCGAGTTCTGCTAGCCAAGCTGTGGATTCCAATCGCACCCTGATTCTTGAATGTTG	68	+	chr3R	6683541	6683609	6683541..6683609	CG4570-RA,	FBgn0037844,	CG4570,	1	.
CG40311-RA	TCTGTTATTTGTAGGCGCACAAATATAACTATGTATATGCAATCTTGTGTAACTACGTTCATTGCCTTT	69	-	chr2RHet	1298709	1298778	1298709..1298778				0	no match
CG8638-RA	GGCATCCAGCATATATAGTGCACATCAAGCAGCAGAAAGAACCATCGGAGCAACTACATCTGGACGCGG	69	-	chr3L	7081027	7081096	7081027..7081096	CG8638-RA,	FBgn0035736,	Cpr65Eb,	1	.
CG12252-RA	GTTAACGCCGCCAAAAAAGAGCCTGCCATTAAAGTGGTCAATGCGAATTGGTTGTGGACCTGCGC	65	-	chr2R	20456755	20456820	20456755..20456820	CG12252-RA,	FBgn0035026,	Fcp1,	1	.
CG2258-RA	CTTGGCCTTCAATCAGCAATTTAGCGAACATACCTATAATGTCATCATCGAAGGTATGCAGAATC	65	-	chrX	7991248	7991313	7991248..7991313	CG2258-RB,CG2258-RC,CG2258-RA,	FBgn0029997,	CG2258,	1	.
CG13202-RA	AGCACTCAGAACTACGAAGAATTCAAGAACATAGTGGATGCGGCTCATCTTCGTCCAGTGACCAAGGGC	69	-	chr2R	7243727	7243857	7243727..7243770,7243831..7243857	CG13202-RA,	FBgn0033623,	CG13202,	1	.
CG30322-RA	AAAGTCAGTGACTCAAACTGTTGTGCTAAAAAGCAACAAAAATACTCTATTGCCGACTTTAGCCA	65	+	chr2R	12286655	12286720	12286655..12286720	CG33960-RA,CG33960-RB,	FBgn0053960,	CG33960,	1	.
CG9024-RB	GAAAGTGATGAATGGCATGTTGAGAACCCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGAC	69	-	chr2L	5892600	5892669	5892600..5892669	CG9024-RA,CG9024-RB,	FBgn0002856,	Acp26Ab,	1	.
CG9623-RB	ATCGAGCTCTTAGTCGAGTTTTAAACCATGCGATGTCGACACGGGAGGTGCAAGTGCATAATCCCCTCT	69	-	chrX	16647279	16647348	16647279..16647348	CG9623-RB,CG9623-RC,CG9623-RD,CG9623-RF,	FBgn0001250,	if,	1	.
CG2929-RA	CGAAGATGAACCCTCGTCGAGATCCCCCCCTACGTCGGAACCCGATTGGAATGTGGTGAACTCGG	65	-	chr3R	1384566	1384631	1384566..1384631	CG2929-RB,CG2929-RA,CG2929-RC,CG2929-RD,	FBgn0037339,	Pi4KIIalpha,	1	.
CG9119-RA	CAGTCGTGTTTGCAACGATCTAGCGAGCGGTAGGTAGCCTCAGCGCGACTAGAATACTTGGTGGGCTAG	69	-	chr3L	1204720	1204789	1204720..1204789	CG9119-RA,	FBgn0035189,	CG9119,	1	.
CG31684-RA	CGTCTCGGATGAGTTGAGGGGCTCGTACTTCCTCCAGACTGCAAGTAAATCACCCTATGCCCTCGGAAA	69	-	chr2L	2418694	2418763	2418694..2418763	CG34447-RA,	FBgn0085476,	CG34447,	1	.
CG6454-RA	CGATCCGGGAAAATGGTGGCATCAGCGGATTTGTCCATGGCTTCATTACCGAACTGTTGGCTGTG	65	+	chr3R	20181217	20181282	20181217..20181282	CG6454-RC,CG6454-RD,	FBgn0039187,	CG6454,	1	.
CG9638-RA	GTTGTTCCTTTGTGTGAGATGTCGGGATTCAGATATTGTGTATTAACTAAGCTTAAGTAGGGGACCCAA	69	-	chr3R	4062893	4062962	4062893..4062962	CG9638-RA,CG9638-RB,	FBgn0037555,	Ada2b,	1	.
CG9887-RA	CGCCTACGGGGTGTTCGGAATCATATGGTACATGTTCTGGATATGGTTGTGCTTCGAGAACCCGCGCAA	69	+	chr2L	2406373	2406442	2406373..2406442	CG9887-RA,CG9887-RB,	FBgn0031424,	VGlut,	1	.
CG14231-RA	ACCTGTTGGCCACTTTTCCAGGAACGTAATAACTGATATGACGACAGGTCTTTATCACGCGAATCGATA	69	-	chrX	19594133	19594202	19594133..19594202	CG14231-RA,	FBgn0031060,	CG14231,	1	.
CG15168-RA	TAATTGTTCAATAAAAATGGGCAGTAAACTGTTTAACAAACTCTTGCTAATTGCCGGATTTGCCA	65	+	chr2L	18987772	18987837	18987772..18987837	CG15168-RA,	FBgn0032732,	CG15168,	1	.
CG5097-RA	CCTGTAATCAGGACTGCAAGTGCGTGTGCAAGAATGGCCCCAAAGATCAGTGTTGCAAGAGCAAGTAG	68	+	chr3R	16186190	16186258	16186190..16186258	CG5097-RA,	FBgn0038790,	MtnC,	1	.
CG11841-RA	GTCCAGTGCTGGCCTATCACAAGGATCTCGCCTGCATGTACCACGTAATGGGCATCACCTCAGCC	65	+	chr3R	24877724	24877789	24877724..24877789	CG11841-RA,	FBgn0039628,	CG11841,	1	.
CG8681-RA	ACAGTCACTCCACCTCCAGAGATAGGCTGGAAACTGGACAAGTCAACACAAATCGATGTAGTTCCAACA	69	+	chr2L	21211444	21211513	21211444..21211513	CG8681-RA,CG8681-RB,	FBgn0026255,	clumsy,	1	.
CG11607-RA	TTGAAATCAATGTGGTGGAGTAGAGCCGCCTATGTAGATAGCTCCGTTTACACGTGTAAAATGCCATGT	69	-	chr2L	6013208	6013277	6013208..6013277	CG11607-RA,	FBgn0001170,	H2.0,	1	.
CG11961-RA	TGGACCCAATCACATGGCCCTCTTTATACAGCCCTTGAACGGAGCAAAGATGATGGACTGGTCCTTCCA	69	+	chr2R	15249345	15249414	15249345..15249414	CG11961-RB,CG11961-RA,CG11961-RC,	FBgn0034436,	CG11961,	1	.
CG4001-RA	CCGCCTACATCTACGAGGAGAAGTTCTCCATCAAAGACCTGCAGCAGGATGTCTACCACATGGCCTCC	68	+	chr2R	6003735	6003803	6003735..6003803	CG4001-RA,CG4001-RC,CG4001-RB,CG4001-RD,	FBgn0003071,	Pfk,	1	.
CG33332-RA	GCACTTTCTATCAGGGAAAAGAGCGACCCGACTTTAGCGATCGATCATCCTGGACGAAGACCCCGCAG	68	+	chr3R	10714190	10714258	10714190..10714258	CG33332-RA,	FBgn0067629,	CG33332,	1	.
CG31360-RA	GCCTTCCTATTGGCACAGTCGAAAAAAAGACAAGCGAAACCTCTGGAGAATTTCACTATGAAAGGCTTG	69	+	chr3R	13510996	13511065	13510996..13511065	CG31360-RA,	FBgn0051360,	CG31360,	1	.
CG1421-RA	CGCGTAAAAGTCACAGCTGAGAACCCCGTTTCCGAGAATGCCGTCAGTGAATTTCTGGAGCAATGCTCA	69	+	chr2L	21903449	21903518	21903449..21903518	CG1421-RA,	FBgn0032966,	CG1421,	1	.
CG15489-RA	AGCTCCTTCAGCAACATGTGGCCAACAGTTCACCACTGCAACATCTGAGCAATCTGTTTGGCCAACATT	69	+	chr2L	12594202	12594271	12594202..12594271	CG34395-RB,	FBgn0085424,	nub,	1	.
CG3338-RA	GGCTGCGAGCAACTCTTGTTGGACACCCATTCGCTAAAGACGGCTTTATTAGAGCTACCTTCCGTGGGA	69	-	chr2L	4383649	4383718	4383649..4383718	CG3338-RA,	FBgn0031598,	CG3338,	1	.
CG9054-RA	GCATCTGGTACAACGAACCAAACCTACTGGCCGAAGTTGAGGACCACTTGAACATCACCATCCAGCAGG	69	+	chr3L	22258694	22258763	22258694..22258763	CG9054-RA,	FBgn0015075,	Ddx1,	1	.
CG9586-RB	TGTTTGCATGTTTGCCTAAAGCGAAGTAAACTTTGAAGAGATCTACCGAACTGTTGAATATAAATGTAT	69	-	chr2L	9165449	9165518	9165449..9165518	CG9586-RB,	FBgn0032101,	CG9586,	1	.
CG32141-RA	CGAACCTCGAGAAGATTCCGTAGTAAAAAATAGGGTGCGATTTGCTCTAACAGATCAGGGAAAACCAGC	69	+	chr3L	14197107	14197176	14197107..14197176	CG32141-RA,	FBgn0052141,	CG32141,	1	.
CG31100-RA	GGTCACTTTTCCGGAAAGACACCGCTGCAAACATATGCCGTTCAGATTTTCCACACCCTCAAGGCTCCG	69	-	chr3R	4822226	4822295	4822226..4822295	CG31100-RA,	FBgn0051100,	CG31100,	1	.
CG32382-RA	GCTGGGGAACTGATAAACGAAAGGTAAGGCTGCCCACATGGATGCGTTGCGTAGAAGTGGAGGTCATG	68	-	chr3L	7433320	7433388	7433320..7433388	CG32382-RB,	FBgn0052382,	sphinx2,	1	.
CG9285-RC	TGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCCAGGAAGCTCTCATTCTGGAGGCCGGTC	65	+	chr3R	9610094	9610159	9610094..9610159	CG9285-RA,CG9285-RC,CG9285-RB,	FBgn0000454,	Dip-B,	1	.
CG33303-RA	GCACATGCGCGCGAAAAGTCGAAAATTATTTCCGAGTGGTTTGAACTTTTTCGACGAGTGTGCTGTGTA	69	-	chr2L	10373960	10374029	10373960..10374029				0	no match
CG6095-RB	CTGCTCAAGGAGTTGTCCAACAGTCACAATCGCAATCTGCAGATCGCTCTGAGAGCAGCCAAGCG	65	-	chr3R	21876684	21876749	21876684..21876749	CG6095-RA,CG6095-RB,	FBgn0260946,	exo84,	1	.
CG6143-RA	CTTGAAACTGACGAGGGAGAACACAAACAAGTTAATTGAATCGAGAATCGTATTACCTACCCGATTCCC	69	-	chr3L	17631308	17631377	17631308..17631377	CG6143-RA,CG6143-RB,CG6143-RC,CG6143-RD,	FBgn0004401,	Pep,	1	.
CG6006-RA	CGGATCTGCTCTGGCTGAAGATCACATTCCTGATGATGGGCAAGTTCACCATTAGTGCTGGCAATACCA	69	+	chr3R	11995558	11995627	11995558..11995627	CG6006-RB,CG6006-RC,	FBgn0063649,	CG6006,	1	.
CG30093-RA	TTTAACTTAGCTTACTACGAACTGATGGTAAGAAGTTCCCACTAAATGGAATGCCACCTAGATTT	65	+	chr2R	11831923	11831988	11831923..11831988	CG30093-RA,	FBgn0050093,	CG30093,	1	.
CG12021-RC	CTCCCTAGACGGCTCCACGAAGATCATACCCACGGAAGTTGTACCCTTGGCGGATAAAACGGAGG	65	+	chr3L	1800635	1800700	1800635..1800700	CG12021-RC,CG12021-RA,CG12021-RB,	FBgn0067864,	Patj,	1	.
CG1303-RA	GGGAGTGATAAACCCAATATCCGGCGATTCGAAAGACCAAGTCGCAATTGGTGTGCTTCACTTCGTGAT	69	-	chr3R	2485565	2485634	2485565..2485634	CG1303-RA,	FBgn0024912,	agt,	1	.
CG14893-RA	CCTCTTCGGCATGCGACTTTACCTGACCAAGGAACCTCCAACGCAGGAATCTCTTGAACAGGGTCG	66	+	chr3R	12448091	12448157	12448091..12448157	CG14893-RB,	FBgn0038451,	CG14893,	1	.
CG6151-RB	GGTTCGCGTGCAGCAGAACGCAAAGTACAACAGGATTTTTTTCGTTCCGTGTGACGTGAAAAGTGCAAA	69	-	chr3L	15809428	15809497	15809428..15809497	CG6151-RB,CG6151-RA,CG6151-RC,	FBgn0261722,	fwe,	1	.
CG17521-RB	AGCTACAGTTGAGGATTTTCCCCTGTGTGTTCATTTGGTTTCTGATGAATACGAACAGCTGAGTAGTGA	69	-	chr3L	23088146	23088215	23088146..23088215	CG17521-RC,CG17521-RD,	FBgn0024733,	RpL10,	1	.
CG31324-RA	CCTCTCTGGCATATTCCTCCTACCTAAAGGAACAAATCATCCAACTCATAACAAAAGAATTCATCAATA	69	+	chr3R	21956311	21956380	21956311..21956380				0	no match
CG4073-RA	AATGCGATACGTCTCGATGGTCAGTCTGATCTACGTGGCTAGTCTCATCCTCTTCACCATCACCGTTAT	69	+	chr3R	6541326	6541395	6541326..6541395	CG4073-RA,	FBgn0037827,	CG4073,	1	.
CG7440-RA	TGGCATGGACTTTTGGTTGTACAAGTACGCCTACTACAATCCGAGATCGTGCATGGACTGCCTGTCGGA	69	-	chrX	19019657	19020087	19019657..19019677,19020038..19020087	CG7440-RC,CG7440-RD,	FBgn0030984,	tgy,	1	.
CG14185-RA	TCCAACAGCAGCCTCGACGTCCAATCATCGTCCCATTATGTCTTCAGCACACAGTCAACGCTGGACTAG	69	+	chr3L	20100427	20100496	20100427..20100496	CG14185-RA,	FBgn0036936,	CG14185,	1	.
CG14173-RA	AGGATACTCTTTTAGTCCACTGCTAACCAATCTGTACGGATCCGAGGTCCTGATCAAGATGCGTCGCCA	69	+	chr3L	9791838	9791907	9791838..9791907	CG14173-RA,	FBgn0044051,	Ilp1,	1	.
CG33261-RD	TAAGCAGCTCAAAAGTAATTGATCTGATCAAAAGAGAGTTCGCTCAACAAGGTTTCTAAAAACCCACCC	69	-	chr3L	14743705	14743774	14743705..14743774	CG33261-RA,CG33261-RD,	FBgn0013263,	Trl,	1	.
CG14995-RB	TCGCCTACCTACAAAATCTTCCGAGTCTCAGGAATCTCTGGCTGGAGGAAAATCCCTGCTGCGAAC	66	-	chr3L	4098038	4098104	4098038..4098104	CG14995-RF,CG14995-RD,CG14995-RA,CG14995-RC,CG14995-RG,CG14995-RH,	FBgn0035497,	CG14995,	1	.
CG31037-RA	GGAGCTTCGTTTCCGGTTCAGATCCTGGATCCTCTGAAATTTCGTTCAACACGCATCAGTTGAGGGCCC	69	+	chr3R	25640168	25640237	25640168..25640237	CG31037-RA,	FBgn0000247,	ca,	1	.
CG10421-RA	GCCCGGCAAACATCTCAAGTACGTCATTCCCGATCCCGTAAATTCGCAGTTCTTTAGCGTAGGATCGCT	69	-	chr3R	21051482	21051551	21051482..21051551	CG13664-RC,CG13664-RB,	FBgn0039294,	Cad96Cb,	1	.
CG15152-RA	ATGGTCAGCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAAGTTTTCAC	65	+	chr2L	18114859	18114924	18114859..18114924	CG15152-RA,	FBgn0032665,	CG15152,	1	.
CG15059-RA	GCCATCGCCAGAAAGAAGGCAGAGTCTCATCTTCAGCGCTAGCCTGTCTCGTCCTGAGCCGTAAG	65	-	chrX	18152973	18153038	18152973..18153038	CG15059-RB,CG15059-RA,	FBgn0030905,	CG15059,	1	.
CG2808-RA	CGACTCCCGTGAATCCTCGCCAGACATAACGGGTGAAATAGACGATGACATGGATGACTTGCCGC	65	+	chr2L	3684066	3684131	3684066..3684131	CG34340-RE,	FBgn0085369,	CG34340,	1	.
CG41075-RA	TGGACGCTCATCGCTCTTATCCTATGAAAACCGCCCAAGACGAACGATTTTTCCCTGGACGCGAAGAAT	69	-	chr3RHet	547067	547136	547067..547136				0	no match
CG15432-RA	TGTCCGACGAGTACGCCTGCGTGGCCAAGGGCAAGCTTAAACTAAAGAACGATTCGGATCTCAAGAAGA	69	+	chr2L	4442498	4442567	4442498..4442567	CG15432-RA,	FBgn0031603,	CG15432,	1	.
CG2044-RA	GGCCGAGGGAACAAACGCTGCTTCAGATTATCACGAACTGTCTGGATGTTACGTGATTGATCTTAGCCA	69	+	chr2R	4325810	4325879	4325810..4325879	CG2044-RA,	FBgn0002535,	Lcp4,	1	.
CG15585-RA	ATCCTGCCCCTCGTCATTCTGATGAAGATTGCCCACCTGAAGATGACTTTGGTGAGCATGCTGAT	65	+	chr3R	2000180	2000245	2000180..2000245	CG15585-RA,	FBgn0037406,	Osi1,	1	.
CG11491-RF	AGCTAGCGACGGGAGTATTCAGAGCAGAATCATAAAGGGAATAGGGCCGCAGTTAGCACTGCCCCAAAA	69	+	chrX	1555416	1555485	1555416..1555485	CG11491-RA,CG11491-RL,	FBgn0000210,	br,	1	.
CG17364-RA	AAATCAACTCAAGCATCAGTCATCCCGCATCCATTTGTACGATCGTGTGGTCTGCTCATTCCCATTCGC	69	.	.	.	.	.	CG17364-RA,CG17364-RB,	FBgn0036391,	CG17364,	1	.
CG12120-RA	GTTGGCATCTTCGATCTCAGTGCCAGGACCATTTCCCTGTATTCCGACAATCCCAGCGAGACGGA	65	-	chrX	9112301	9112366	9112301..9112366	CG12120-RA,	FBgn0086367,	t,	1	.
CG9151-RA	CCGAGCGCCCAAAAATCGAAATGGAGAAAACTCGAGCATTATCCAAGTAAACATCGTTGGCAAATAACA	69	-	chrX	15246486	15246555	15246486..15246555	CG9151-RA,CG9151-RC,CG9151-RD,CG9151-RE,CG9151-RF,CG9151-RG,CG9151-RH,CG9151-RI,CG9151-RJ,CG9151-RK,CG9151-RL,CG9151-RM,CG9151-RN,	FBgn0000028,	acj6,	1	.
CG15922-RA	CAGGAAGTTCGACGGAATGACAAACCCTCTGGTGATGAGCTTAAGACATACAATCTATTTATTGTATAG	69	-	chr3R	16385455	16385524	16385455..16385524	CG15922-RA,	FBgn0040575,	CG15922,	1	.
CG1537-RA	ATGTAGTGCGATTTAGAAAGAAAGTATTATTAAATCAAAAGACCTAATTTATGAGAACGAACGAA	65	-	chrX	10956053	10956118	10956053..10956118	CG1537-RA,	FBgn0030260,	CG1537,	1	.
CG31526-RA	CCGCCTCACCTAACCACCTCCGAAATGCATCTTCCCTTAGCCTTTGGCACGGTATTCCATTTCCTGTTT	69	+	chr3R	359251	359320	359251..359320	CG31526-RA,CG31526-RC,	FBgn0051526,	CG31526,	1	.
CG9009-RA	TCGTCTCAATCAGGAATGGTACACAGACAAATGTGGAGGTCCTAAAGCAATCAACCTATTGCCAAATTT	69	-	chrX	14828537	14828606	14828537..14828606	CG9009-RA,CG9009-RB,	FBgn0027601,	CG9009,	1	.
CG12644-RA	CCAAGACAATGTCATTGGCGGCACTGATTTTGGGTCTGATGGGTCTAGCGTTGGTAACCCTGGCAG	66	+	chrX	10052888	10052954	10052888..10052954	CG12644-RA,	FBgn0040940,	CG12644,	1	.
CG9925-RA	CGCCTTTTCCTGCCGACGTGACAAGTACAAAGTCAGCTTCCCACGTTCTGCCCATTAAACGCTTCCTTT	69	-	chr3R	9787322	9787391	9787322..9787391	CG9925-RA,	FBgn0038191,	CG9925,	1	.
CG11726-RA	ACTCTAGCCATTATTCGGCCAGTGTCAGTGATCTCAGCACCATCGATTCGCCAATCTCTGCGAGGAACT	69	+	chr3L	11388423	11388492	11388423..11388492	CG11726-RA,	FBgn0036156,	CG11726,	1	.
CG3054-RA	ACACCCAATTAAATCCCGCTGAACCAGCCACTGAGGAACCCGTGTTGGAAATCGACGATGATGACG	66	+	chr2L	4399164	4399230	4399164..4399230	CG3054-RA,CG3054-RC,	FBgn0022153,	l(2)k05819,l(2)k05819,	1	.
CG17249-RA	CTCCCGCTAAGGATCTGGAAAATGAGGATGTGGACAACCAGGTTACTTCCGCCTTTGCCAACCTGC	66	-	chr3L	1647078	1647144	1647078..1647144	CG17249-RA,	FBgn0035249,	CG17249,	1	.
CG13478-RA	AGATCCCGGTGCTATGCCACGAATCCTAAGTGAATTCTGCGAGTATCGGGACACGAATATCCTGCAGGA	69	+	chr3L	14613953	14614022	14613953..14614022	CG13478-RB,CG13478-RC,	FBgn0003388,	shd,	1	.
CG5231-RB	TGGCAAAGGGTCCGAATTTCCATGACTTTGTGCAGAATCCGGACAACACCAGAAACGAGTGGGAACAGT	69	-	chr3L	20425132	20425201	20425132..20425201	CG5231-RC,	FBgn0029158,	Las,	1	.
CG4239-RA	CAGAAACCAACCACAGACTTATTAAGATGCCATACTTAAGTGCTTTAAACATGGCCCATACAGCTTATC	69	+	chrX	16282360	16282429	16282360..16282429	CG4239-RA,CG4239-RC,CG4239-RB,	FBgn0030745,	CG4239,	1	.
CG30026-RA	ACCACCACAGCTTCCACAACACAAGGCGATCCAATATATCCGACTTACAGACCTCCCTACATGCGG	66	-	chr2R	7296488	7296554	7296488..7296554	CG30026-RB,	FBgn0050026,	CG30026,	1	.
CG3219-RA	CCGGAAGGCATCAGAGCTCAATGGATGGCATCTATGCAATGGCCGCTAAGGACGTGTTCTCCACTCTAA	69	-	chr2R	19012487	19012556	19012487..19012556	CG3219-RA,	FBgn0034824,	Klp59C,	1	.
CG18539-RA	CTAAACGGTTTCTACAAGGACGCGTTCATCAAGAATGTGGGCCATTGCTCCAATATGGTGCAGTTCGAT	69	+	chr2R	14186140	14186209	14186140..14186209	CG18539-RB,	FBgn0034325,	CG18539,	1	.
CG13438-RA	CGGTGAGGTGATTAACGGCAGGAGTAATGGCTTCAATGACATGGATGATGGAGCAGATCTCGACGGCGA	69	+	chr2R	16580819	16580888	16580819..16580888	CG13438-RA,	FBgn0034545,	CG13438,	1	.
CG11500-RA	TGTGAATTGCACAAAATGTTGGACATCCAGACGCATATGGACTTCGCGGGTCAGGGAAAGGCGGAG	66	-	chr3R	25316651	25316775	25316651..25316678,25316736..25316775	CG11500-RA,	FBgn0040623,	Spase12,	1	.
CG5393-RA	AAAGCAGGATCCACAGCTACACATCCAGACCCGACACACAGAGAGACATTCCTGGCATTGTTGATCAGT	69	+	chr2R	19486220	19486289	19486220..19486289	CG5393-RB,CG5393-RD,CG5393-RE,CG5393-RC,CG5393-RA,	FBgn0015903,	apt,	1	.
CG14734-RA	CTTGATGGAAGTTCCTCTTAGAGCTACAAAACTAGGAAATGCGAAAGTAGATGGACACAGGGGACCGGG	69	-	chr3R	7820370	7820439	7820370..7820439	CG14734-RA,	FBgn0037976,	Tk,	1	.
CG2985-RA	ACCAACCAGGACAGCAAGGACTACCAGTAAGGATGAGTCTGCTTACTCTGGACACCTGGAATGGCAACT	69	+	chrX	9949316	9949385	9949316..9949385	CG2985-RA,	FBgn0004045,	Yp1,	1	.
CG10609-RA	TTATCTACCTGGCTGTTAACCAGAAGAATTTCTACAGAACATTGAATATATGGAACCAGGTGAAC	65	-	chr3R	1235239	1235374	1235239..1235267,1235337..1235374	CG10609-RA,CG10609-RB,	FBgn0037324,	Orco,	1	.
CG32669-RA	CAAACGCACGCTCACCGACCGTCAGACCTTGTGGTACTCCAAGCTGTTGTCCCTATTCTTCGGAG	65	-	chrX	10737775	10737840	10737775..10737840	CG32669-RA,	FBgn0052669,	CG32669,	1	.
CG4194-RA	AGGCTGGCCATCAATCTAACGGCTGACTTTGAACACCTGCAGCATAAATTGGATGATTTGAAACGACAA	69	+	chrX	1962912	1962981	1962912..1962981	CG4194-RA,	FBgn0025627,	CG4194,	1	.
CG32629-RA	CCGATTCCGATGCCATTGGTCAATTGGTAAGGGGCTTTGGGAAGTGTAAGAGGAAGAGCGTGCGG	65	+	chrX	13458008	13458073	13458008..13458073	CG32632-RC,	FBgn0086674,	Tango13,	1	.
CG4704-RA	GCGGCACATTGCGTATGTAGTGACCGGCGTAAAACTCTCGCAGCATCTCACGGATGTGATTTTCTGCAT	69	-	chr3R	18670109	18670178	18670109..18670178	CG4704-RA,	FBgn0039029,	CG4704,	1	.
CG14359-RA	TGCCTGGACGGTAGCCAGGGCAATGAGGAGGAAGGCACACAGAGCAAAGAACTTCATCGTTTCAAAATT	69	+	chr3R	9978217	9978286	9978217..9978286				0	no match
CG7718-RA	AAATTCAGGTCATCCACGAGCCAAAGCACTTCTACGAAACGCTGGTGCAACGAATCGGTCAGGCC	65	-	chr3R	14571269	14571334	14571269..14571334	CG7718-RA,	FBgn0038649,	CG7718,	1	.
CG2974-RA	GCTGTGCGTCAAGCTGTGATTTCTGCATTTATGCGGTTTCCCAATAAACGATGGAGTCTTGAGCCGCAA	69	-	chrX	9979162	9979231	9979162..9979231	CG2974-RB,	FBgn0030178,	CG2974,	1	.
CG13551-RC	AGCGGCTCTTTTATTGCGACTTGGTTTTCGAAAAAGTTCAATGCACTCCGTTTTGTTAAGGAGACGGCT	69	-	chr2R	19270708	19270777	19270708..19270777	CG13551-RC,	FBgn0040660,	CG13551,	1	.
CG2875-RA	ACAAGGCACGCCTGTTTTACTTGGCCGATATCTTTCTGACCTCCACCCATTTGCCCGAGAATCTGG	66	-	chrX	3466373	3466439	3466373..3466439	CG2875-RA,CG2875-RB,	FBgn0029672,	CG2875,	1	.
CG7408-RB	AGGTGTCATTCGGAGAGCGCAACATCAGCGAACTAAGAGATCAGAGCAGGATCGAATGCCCAGATCCT	68	+	chr3L	17875321	17875389	17875321..17875389	CG7408-RB,CG7408-RC,CG7408-RD,	FBgn0036765,	CG7408,	1	.
CG7046-RA	CGGAGTCGTTTCCCCATATCTATGAAGCTCCGTTGTCCTCTCGATTCTCAAAAACTAACCAAAGGCCAA	69	+	chr3R	18319234	18319303	18319234..18319303	CG7046-RA,CG7046-RB,	FBgn0038979,	CG7046,	1	.
CG13825-RA	GGCGACGCAAATGTTCCCGAGTGCTCCTTAAGCTGTCGCCGATTTTCTACAATTTTACGCTCGTCCGG	68	-	chr3R	19070403	19070471	19070403..19070471				0	no match
CG14408-RA	AGCCAAAAGAGTTACTGTCCGATGAGCAGGTTGAGAATTTACTATTAAATCACTTGGTGGATGAGAATG	69	-	chrX	14721987	14722056	14721987..14722056	CG14408-RA,CG14408-RE,	FBgn0030581,	CG14408,	1	.
CG1107-RA	ACGCTAAGTGGAAAGTCTCCCGTCAACACTAGTCCGCAGCCTACTCAGTTCTCAAGCCCCACTCA	65	+	chr3R	51773	51838	51773..51838	CG1107-RA,CG1107-RB,	FBgn0037218,	aux,	1	.
CG17570-RA	GGTCCACGAAAAGTATATGGTTGTCCGTGGATTCCTGAGTCGTGACAAAAGAAATCTGCTCGCTGGTC	68	-	chr2L	20263914	20263982	20263914..20263982	CG17570-RA,	FBgn0260000,	CG17570,	1	.
CR32873-RA	GACGTTGCCTTGTGTAAAAGATCTTGATATAAAAAGAATTGGACATCTTCAAATACTAAAATAAA	65	-	chr2L	9893804	9893869	9893804..9893869	CR32873-RA,	FBgn0063449,	Uhg2,	1	.
CG12621-RA	AGCCCGTCTGTCACCTCAGTTGGCTAATAAATGGGGAACCGGTGCAAAAGACACACCTTCGGCAATAC	68	+	chr2L	17169906	17169974	17169906..17169974	CG12621-RD,	FBgn0032627,	beat-IIIa,	1	.
CG31740-RA	CCAAACTTTCAAGATGGTTCTGATGCTTTGCTGCAGCTTCGATCCCTTCTACGTTGGACCCTGCC	65	+	chr2L	18009294	18009359	18009294..18009359	CG31740-RA,	FBgn0051740,	CG31740,	1	.
CG4226-RA	ACGCTCTACGCCGGAATCCTGATTGCCTTTCTCATCGGCATTACGGAGTTTTTGGTCTACGTGCAGCAA	69	+	chr2L	917300	917369	917300..917369	CG4226-RC,	FBgn0046113,	GluRIIC,	1	.
CG11136-RA	CCAGAACAAGGCTTTGGCCAATTTCTCGAGACTGGTGAGCCTCTCACTGCGTCACAACCAGATCGA	66	+	chr2R	16546413	16546479	16546413..16546479	CG11136-RB,	FBgn0034540,	Lrt,	1	.
CG5605-RA	GCCGACGACAACAAATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTCAGGGC	69	+	chr3L	20343816	20343885	20343816..20343885	CG5605-RC,CG5605-RB,CG5605-RE,CG5605-RF,CG5605-RA,CG5605-RG,	FBgn0036974,	eRF1,	1	.
CG1484-RA	TGAGCTGAGAGGATTACTCCCCTGTGCTAGTCCTTTTAAAATGTTAACCTACTTAAAGCTAGCCTGTAA	69	+	chrX	21215955	21216024	21215955..21216024	CG1484-RA,	FBgn0000709,	fliI,	1	.
CG18555-RA	TCCGACAATGTTTCCGAGGATAAGGGTCACATCTGCACACAGTGTCACATGTCCTTTCGGAGACCTGGT	69	-	chr2L	3170480	3170549	3170480..3170549	CG34406-RA,	FBgn0085435,	CG34406,	1	.
CG15316-RA	GCCTCTGGTCGTAGTCCTGGCCTTTAACTCGGTTAGAGCCTGGTTAGAAGCTTGGCCATCCCGTTTAG	68	-	chrX	9316007	9316075	9316007..9316075	CG42611-RB,	FBgn0261260,	Megalin,	1	.
CG31318-RB	GAAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCCAATCGGTGTGCCAC	65	-	chr3R	14080729	14080794	14080729..14080794	CG33520-RC,CG33520-RB,CG33520-RA,CG33520-RE,CG33520-RG,	FBgn0053520,	Rpb4,	1	.
CG10002-RA	AAGAAGGGATCGTGTGTAATGTTCTTTCATAAAACAAAGCCCCAAATGAAACAGTCCCAAAAAGAGA	67	-	chr3R	24407622	24407689	24407622..24407689	CG10002-RA,CG10002-RB,	FBgn0000659,	fkh,	1	.
CG11529-RA	CCGTGGGACAATCGAAGTACGGCAGGATCGAGAAGTTCCCCTACCAGGTGATGCTCATCGGCAAG	65	+	chr3L	12191091	12191156	12191091..12191156	CG11529-RA,	FBgn0036264,	CG11529,	1	.
CG30019-RC	GCGCTGATCGGTTGCCAAAATTTGGGAGACATCACGTCGGCAATGGTGGTACATGAGAGTCAATATGCC	69	+	chr2R	6772227	6772296	6772227..6772296	CG18003-RA,CG18003-RB,CG18003-RC,CG11919-RA,CG11919-RB,	FBgn0061356,FBgn0033564,	CG18003,CG11919,	2	.
CG14464-RA	ACTTTAGTATAACAAATTCTCGCCAAGATATGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCA	69	+	chr2R	716782	716851	716782..716851	CG14464-RC,	FBgn0033000,	CG14464,	1	.
CG2262-RA	GGTGATGTACCACGAGCCGGCCTTTTGGTGTTCCATCTCCTACTATGAGCTAAATACGCGTGTCGGC	67	-	chrX	8033797	8033864	8033797..8033864	CG2262-RA,	FBgn0025800,	Smox,	1	.
CG14639-RA	ACTTTTTAAAAAGTTGTAGTAAGAATCCTATCGCTTTCATTGTTTTATATCAACCATCATACTGTAGTA	69	+	chr3R	73897	73966	73897..73966	CG14639-RA,	FBgn0037224,	TwdlF,	1	.
CG14622-RB	ACGAGATCCAGAGTCGAACCCGTATTGAACTTACATATATTTTAAGGCGCTTTAGGAGTTTGCACAGAC	69	-	chrX	1183837	1183906	1183837..1183906	CG14622-RB,CG14622-RC,CG14622-RA,CG14622-RD,	FBgn0025641,	DAAM,	1	.
CG30364-RA	TCGATGTGGAAGAGATACAAGGATGATGGTAGTAATCGGCCAGAAGCTATGTGGCACTACCCGGAGG	67	-	chr2R	4249243	4249310	4249243..4249310	CG30364-RA,	FBgn0050364,	hubl,	1	.
CG5216-RA	GCGTCTGCAGCCTGGAACATTCTATTCGCACACCAACAACTATTCGTATGTGTTTCCAGGAGCCCAGGT	69	+	chr2L	13168178	13168247	13168178..13168247	CG5216-RA,	FBgn0024291,	Sir2,	1	.
CG3790-RA	GTTTGGCAGTGTCCATGCCTTTGCTGATGCTTTTCTCCTGCTTCTTCGTGCTTCCGGAATCACCACG	67	-	chr2R	8761336	8761403	8761336..8761403	CG3790-RA,	FBgn0033778,	CG3790,	1	.
CG3526-RA	GCGGTCCCATTGTCGCAACCGAGTCACATTGCTCACATTGCCAATCACTTGATGTTCTCGCCATC	65	+	chrX	2787637	2787702	2787637..2787702	CG3526-RA,CG3526-RC,	FBgn0040355,	CG3526,	1	.
CG6530-RA	GAAAGTGAAGAAGGAAGCACAAAACTTTACTCAACAGCAAAAAACAACCAATAGGCTCAATTCGGACAA	69	-	chr2R	13337047	13337116	13337047..13337116	CG6530-RA,	FBgn0028956,	mthl3,	1	.
CG14570-RA	GCACACCACAATGTCCGGTTATCCAAGTGCTTCTCTGGTCACCTTTGCGCTTTGTTCCATTCTTTGCCT	69	-	chr3L	21723469	21723538	21723469..21723538	CG14570-RA,	FBgn0037122,	CG14570,	1	.
CG10741-RA	CCAACCCAAAAGCAACCCCTGATCCTCAACGATTCAACTCAAGAGCTGTTTTTATTATAAATATTTCAA	69	+	chr3L	13495243	13495312	13495243..13495312	CG10741-RB,CG10741-RA,	FBgn0036373,	CG10741,	1	.
CG11984-RB	GCGACGAGTATCGCTATAAAAACAAAAAGGCCAACACAACACAAACGAGCGGTACTGGCGGATTGGG	67	-	chr3R	4836641	4836708	4836641..4836708	CG11984-RD,CG11984-RE,CG11984-RF,CG11984-RG,CG11984-RH,CG11984-RI,	FBgn0037655,	CG11984,	1	.
CG3699-RA	TCGTGGTGACCAACATCCATCGGAACATTGGCATCGTCGACGAGGAGTACAACGGAATGCTCCAG	65	-	chrX	840911	840976	840911..840976	CG3699-RA,	FBgn0040349,	CG3699,	1	.
CG13602-RA	TGTGGGCGTCTTTCCACTGGCGAAACTAGCTTTACTTGCCATTAAGCACATTAGCAAGCCCATTGGCAA	69	-	chr3R	19754626	19754695	19754626..19754695	CG13602-RA,CG13602-RB,	FBgn0039127,	CG13602,	1	.
CG7467-RB	ACCCACACCCAAAATGCTTGGCGTTAGGAAACCAATAAACAATTAATGCAAAACCATACATGGGTGGGT	69	-	chr3R	13513865	13513934	13513865..13513934	CG7467-RD,CG7467-RA,CG7467-RC,CG7467-RB,	FBgn0261885,	osa,	1	.
CG32278-RA	GATGGGAAGTCCTCAGCCAGGTGGAGACTACGTAGCCAAATACCTCTTGACCTCTTTTAAAGCTAGCAT	69	+	chr3L	3171488	3171557	3171488..3171557	CG32278-RA,	FBgn0052278,	CG32278,	1	.
CG14307-RD	CCGCTCAGGATTAGCCATAGGCATTAGCATTAAGTTTTCGTTATCAATTAAATGTCCGAAAAGTAAAAT	69	-	chr3R	14257069	14257138	14257069..14257138	CG14307-RD,	FBgn0004652,	fru,	1	.
CG31265-RA	GGATCATAACTGCTGGACACTGCGTGGAAAATTTCATTCCCGCCCTGGTCAATGTGATCACGGGCAC	67	+	chr3R	12954181	12954248	12954181..12954248	CG31265-RA,	FBgn0051265,	CG31265,	1	.
CG14585-RA	GCCCTTCAGTCCGTTGGTTTGGTATCTCTTCGGCGGAGTACTTTCGTTGATTGGTGTCCTCCTGTGGAT	69	-	chr3L	17809744	17809813	17809744..17809813	CG14585-RB,	FBgn0036757,	Ir75a,	1	.
CG5683-RA	TGACTAAGAACTTACCAAGATGATTGTATAGCAAACGCTTCAAAAGTAGGTAAACGAAAGGCGCCGACA	69	+	chr3L	21429971	21430040	21429971..21430040	CG5683-RA,CG5683-RC,CG5683-RB,	FBgn0005694,	Aef1,	1	.
CG1492-RA	GGGCGGAATTCTCAAGAGCCGGAACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAATGAAGT	69	-	chrX	11905027	11905096	11905027..11905096	CG1492-RA,	FBgn0030361,	CG1492,	1	.
CG3469-RA	TGTCAACAAGGAGACCATGTTTCAGTTCATCACTCGGAGCCTGCGATACGATTACGGTTTCAGCCAAGA	69	+	chr2L	4947187	4947256	4947187..4947256	CG3469-RA,	FBgn0015000,	betaggt-I,	1	.
CG30194-RB	TACACGCTTGGCTTCAAGGATCAGGATGTGTTCTATACTCCCTTGCCCCTATATCACACCGCTGGCGG	68	+	chr2R	18947606	18947674	18947606..18947674	CG30194-RD,CG30194-RB,	FBgn0050194,	CG30194,	1	.
CG1837-RA	GCGATGATAAGCCATTTAGCGAACTTACATTTCAATTTTAAAGTCATTTTGAGTAGCCTACGTTTTAGG	69	+	chrX	11613816	11613885	11613816..11613885	CG1837-RA,CG1837-RB,CG1837-RC,	FBgn0030329,	prtp,	1	.
CG7558-RA	CGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAGGAGAAGCACTGCTACATCTGTCCCGATATCGCCA	69	-	chr3L	8107715	8107784	8107715..8107784	CG7558-RA,	FBgn0262716,	Arp66B,	1	.
CG32057-RC	AATTGCTGCGAGTTCATTGCTCTCCGAGTCCAGGGAAATTTAGAGCCACCCAGTTCGGCATGTCC	65	-	chr3L	10141350	10141415	10141350..10141415	CG32057-RA,CG32057-RB,CG32057-RC,	FBgn0052057,	dpr10,	1	.
CG14485-RA	GCGGGACAATCCCCACTACCGCCACGTTGTGGATATGCAGCTGGAGAACAATCAGATATCCAATGTGGA	69	-	chr2R	13579052	13579121	13579052..13579121	CG14485-RA,	FBgn0034262,	swi2,	1	.
CG10825-RA	TGCCCACCGAAATGTTTCTCAGCCTAAGAGAATCGCCAAACAGCAAGCACAAGTGCATGGAGTTCCAGT	69	+	chr3R	16957066	16957135	16957066..16957135	CG10825-RB,CG10825-RA,CG10825-RC,	FBgn0038860,	CG10825,	1	.
CG14791-RC	CGGAAGCTCCGTCCAAAGCCGTTCCATTCTTAAAGTTGCCCGAGGGATTATGTCTCGAGAGTGCTTCGA	69	-	chrX	1370829	1370898	1370829..1370898	CG14791-RB,CG14791-RC,	FBgn0025382,	Rab27,	1	.
CG14312-RA	ATCACGGTTTCGGTGTACGCCTTCTACAGTCTCTACCATGCCATACTCAAGAAGTTCCCTTCGCGCCA	68	-	chr3R	14108805	14108873	14108805..14108873	CG14312-RA,	FBgn0038596,	CG14312,	1	.
CG14916-RA	ACCGCATGCACAACAAACTGCTGCGTATCTACAAGGGCATCAACGATTGCTGCAACTTGATTCTGGTCT	69	+	chr2L	11115074	11115143	11115074..11115143	CG14916-RA,	FBgn0041246,	Gr32a,	1	.
CG33284-RA	AGTCTAGATTGCCAGTTGGGGAAAAACTTGTTCATCTTTGGCTCTAACGAGCTAACGGAGCGACAA	66	+	chr3L	21117591	21117657	21117591..21117657	CG33284-RA,	FBgn0053284,	CG33284,	1	.
CG32249-RA	GGCGAGATAATGTGGGGAATCAATTAGCGGCCAAGCAACGGAAGCCAAGTTAACACAGCCAACCAGCTA	69	+	chr3L	4468894	4468963	4468894..4468963				0	no match
CG32177-RA	TCTCACCCTAATTGATCCCTCTACACCCCCACAAAATCTCCCTAGGCCTTTTAGTGGCGCCCATGC	66	-	chr3L	17640879	17640945	17640879..17640945	CG32177-RA,	FBgn0052177,	CG32177,	1	.
CG17841-RA	TCAGCATCGCTATACTGTTCTTGCCACAGCTCTACTGGTTCTATCTGATGGTTTTGGGTGCTCTCAAGG	69	+	chrX	10276475	10276544	10276475..10276544	CG17841-RA,	FBgn0028480,	CG17841,	1	.
CG1474-RA	CGCTTTGGCCGAAAGGGTCAGCGAAAGGATGCGAAATCAAAAACAAATGGCTCTGGATACGGCGCGTC	68	+	chrX	8356854	8356922	8356854..8356922	CG1474-RA,	FBgn0023506,	Es2,	1	.
CG33278-RA	GGAACAGCCAAAGTCTTTGCAACAGCAACCTCGAAGTGGTAGACACGCCATTCAGCCTGATTTGCGC	67	+	chr3L	7444928	7444995	7444928..7444995	CG33278-RA,	FBgn0053278,	CG33278,	1	.
CG17475-RA	GGGACCATGTAGCAACTGTCACTGCTATGCCAGTAACTATCCCAGCCTGTGATCCAAGGGGACGAC	66	-	chr3R	12955224	12955290	12955224..12955290	CG17475-RA,	FBgn0038481,	CG17475,	1	.
CG3632-RC	TGGGTGCCAGACCATGCAGTTTCGCGTTGCTCTAGTTGTCAAACTGAGTTCTGGCTTGGACGAAGAAAA	69	+	chrX	16196365	16196434	16196365..16196434	CG3632-RE,CG3632-RF,CG3632-RG,CG3632-RH,	FBgn0030735,	CG3632,	1	.
CG31454-RA	TGTATGGATTTTTCACCGCCGTACTCTGTCACTCAACGGTTCTGGAGGCAAAATCCATGCGGCCC	65	+	chr3R	4349009	4349074	4349009..4349074	CG31454-RA,	FBgn0051454,	CG31454,	1	.
CG3004-RA	GCCAACCCAGCGAGACAATCCGCCAGGAACAAATAATTTGGCATTTTTTGAAACAGTGGGGAGAGTAGC	69	-	chrX	9498427	9498496	9498427..9498496	CG3004-RA,	FBgn0030142,	CG3004,	1	.
CG14965-RA	CCAAAGCAGCAACACCTAATACCACCTAAAGATTTCGAGTGTCCTCTGGGATTCGTGGATGGTGAGACA	69	-	chr3L	3192025	3192094	3192025..3192094	CG14965-RA,	FBgn0035414,	CG14965,	1	.
CG6959-RA	CGAAACCGGGCCAATATCCTCAGATTAGTTTTTGCCATTAGCGTTTCGCAAAACGTGTGCCATTCACAA	69	-	chr3R	7649048	7649117	7649048..7649117	CG6959-RA,CG6959-RC,	FBgn0037956,	CG6959,	1	.
CG10724-RA	AAATCACTCGGTTGGTCTGGCTGGACAATAACACTGTGATCTCCACCGGACAGGACTGCAACACC	65	+	chr3L	13409112	13409177	13409112..13409177	CG10724-RA,CG10724-RB,	FBgn0260049,	flr,	1	.
CG4715-RA	TGGACTAATTGACTTGGAGAAAGCGTTGGACTTTAGGGCCGGACGACTTTCTTTGGGAGATGACGACGT	69	-	chr2L	1133675	1133744	1133675..1133744	CG4715-RA,	FBgn0031305,	Iris,	1	.
CG10895-RC	GCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAGCCAAGATTATGAAGAATCTT	69	+	chr2L	20062915	20062984	20062915..20062984	CG10895-RA,CG10895-RB,CG10895-RC,CG10895-RD,	FBgn0019686,	lok,	1	.
CG10794-RA	GGCTTATCCCTATCCTGATCCCCGAGAGATTGTGAATCTGCAGCCTGAACCACTGGCATATGCTCCCAA	69	+	chr2R	14754985	14755110	14754985..14755043,14755099..14755110	CG10794-RA,	FBgn0034407,	DptB,	1	.
CG7295-RA	GCGAAGTGGTCAACTCGCCCTACGTCATAATCGCGCTGACCTGTGTCCTGGGATATGTGGCCTATATG	68	+	chr2L	1869951	1870019	1869951..1870019	CG7295-RA,	FBgn0031372,	CG7295,	1	.
CG14686-RA	GCGAGCCAATGATCGAGCCTGTGAAGAGGTGTACTCCAATTGTCCGCTGGACAGTAAATCAGCTACGGA	69	+	chr3R	6606300	6606369	6606300..6606369	CG14686-RA,	FBgn0037832,	Desi,	1	.
CG14959-RC	TGCGCCAATGAGACGAGCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACTTTAACTGCACA	69	+	chr3L	3267469	3267538	3267469..3267538	CG14959-RC,	FBgn0035427,	ckd,	1	.
CG11611-RA	GCTGCCAACATGGAGAAGGGTGAGCTGATGAACCAGGTGAAACAACAGATCGCATTGGCCAATGC	65	-	chr3L	11767441	11767506	11767441..11767506	CG11611-RA,	FBgn0036204,	Tim13,	1	.
CG13499-RB	GGTGGCTTTTGTTCGGATTGTCACATATACATTGATGTATGTAAGTTCATCGGATTTCGCCAAAGCAGC	69	-	chr2R	17926953	17927022	17926953..17927022	CG34370-RG,	FBgn0085399,	CG34370,	1	.
CG3019-RA	GGCGATCTGGAGAAGTACAACTTGCTCAACGACGATAGCACGAACACCTTCACCAGCAAACCCGTGC	67	+	chrX	939420	939487	939420..939487	CG3019-RB,CG3019-RA,CG3019-RC,CG3019-RG,CG3019-RI,CG3019-RJ,	FBgn0003638,	su(w[a]),su(w[a]),su(w[a]),su(w[a]),su(w[a]),su(w[a]),	1	.
CG4151-RA	GTCCAACTTCTTTAAATTTTTTTGCCTATGTTAGTCCCGTACAAATATAAATAATTCAATCACATTTAA	69	+	chrX	5396536	5396605	5396536..5396605	CG4151-RA,	FBgn0029770,	CG4151,	1	.
CG31445-RA	CCTTCGCAGCACAGTGTACTGCACCGCAATAAGTCAAGGCACAGAGGAGGATTGGAACTTCCTGTG	66	-	chr3R	25067010	25067076	25067010..25067076	CG31445-RA,	FBgn0051445,	CG31445,	1	.
CG7526-RA	GCCCGTTGGTTGCACTCTGAAGAATATACGTCCAAAATCGAGATCCCCGAAAGAGCTGAAACGCGGCAA	69	+	chr3L	7562381	7562450	7562381..7562450	CG7526-RD,CG7526-RE,CG7526-RC,	FBgn0035798,	CG7526,	1	.
CG1742-RA	CCAGACCAGACATTTTACGTACTATAAAGATAATAAAGTTATAGTTAAAACACATACAATGGCCA	65	+	chrX	20914138	20914203	20914138..20914203	CG1742-RA,	FBgn0025814,	Mgstl,	1	.
CG11956-RB	AGTATCGATCTCTGCCCAAGAGCTATGACATCAAGAGCATCATGGACTCATGGACCCTGCAAACTG	66	-	chr3R	25072506	25072572	25072506..25072572	CG11956-RC,CG11956-RB,CG11956-RA,	FBgn0263236,	SP1029,	1	.
CG33344-RA	GGTTGGTCGTCGGCTTCACAACAGTTGCGATTCGATGAGGACACTGACCACTTCGTTGACGGTTTCC	67	-	chr3R	21750170	21750237	21750170..21750237	CG33344-RC,	FBgn0039396,	CcapR,	1	.
CG31298-RA	GCAATTGCAAAAACTGATCCAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCG	66	+	chr3R	8759374	8759440	8759374..8759440	CG31298-RA,	FBgn0038092,	beat-Vb,	1	.
CG1721-RA	CGACCTTGGACGGCTCCCTTGTAGGTCAAACTTCAGCAGAATTCCCACATATTGCAGTCGCAGCA	65	+	chr3R	24974049	24974114	24974049..24974114	CG1721-RA,	FBgn0014869,	Pglym78,	1	.
CG10912-RA	CGAGTCCTACGAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAGCACCA	65	-	chr2R	13943853	13943918	13943853..13943918	CG10912-RA,	FBgn0034296,	CG10912,	1	.
CG31629-RA	AGTGTAGTGGGCAATTAATAAAGAAAGAGAGAAGTGTCTAAACAAAATGCAGTTAAATACCCTGC	65	-	chr2L	7133376	7133441	7133376..7133441	CG34378-RA,CG34378-RE,	FBgn0085407,	Pvf3,	1	.
CG14531-RA	AACTCTCTGTGGCCGATGAAGAAATATTTAGCAGCTGTCCCAATCCTGAGCCAGGCACCCTCGACATCC	69	+	chr3R	24632514	24632583	24632514..24632583	CG14531-RA,	FBgn0261289,	CheB98a,	1	.
CG6479-RA	CCCGAGCCGTGATGAAACCACGCAGCTACGAACCGGATAGCGATATAGAGGACGACATACCCATCATCA	69	-	chr3L	17331743	17331812	17331743..17331812	CG6479-RA,CG6479-RB,	FBgn0036710,	CG6479,	1	.
CG15811-RA	ATCGCTGTGGTCTCCACCCAGGTGACTCAGAACCTTAAGAAATTCACCGACTCTAAGCGCATGGGCTC	68	-	chr3L	4137834	4137902	4137834..4137902	CG15811-RA,	FBgn0004574,	Rop,	1	.
CG1724-RA	ATCCGGAATGGGATCAGGCGATATTAATTCATCACCGGGCTTTGAGTTCCCCGTAGTGCAGCAGG	65	-	chrX	21073698	21073763	21073698..21073763	CG1724-RA,	FBgn0031164,	CG1724,	1	.
CG4820-RA	TTCCGTATCCAACCAGCGATTGTTTCCCATCTTACAGCTGCAGAATGTCCAGGATTTGCCCAATCACAT	69	+	chr3R	7042477	7042546	7042477..7042546				0	no match
CG13210-RA	TTCCCGGGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGCGTCCTC	68	-	chr2R	7182986	7183054	7182986..7183054				0	no match
CG32297-RA	TGGGCCAGCATTCTGTTAATGAGGAAACACTTCAGAAGATGTCCTCGTGTGCATTGTTGGAGAATGCCA	69	+	chr3L	2654009	2654078	2654009..2654078	CG32297-RA,CG32297-RA,	FBgn0259200,FBgn0259199,	CG42304,CG42303,	2	.
CG4563-RA	GCCATCGTACAGGGTCTCTACTCGGTGACCAAACCCAAGATCATGTTCATCGACGGTCCGGACTACG	67	-	chr2R	20340037	20340104	20340037..20340104	CG4563-RA,	FBgn0035006,	CG4563,	1	.
CG5258-RA	AAGAAGGCCATGAAGCACAAGACTTTCCTGCGAAATGGACTTAAGGATGTACAGACTCGCCTGCGCA	67	-	chr3L	14794952	14795019	14794952..14795019	CG5258-RA,	FBgn0029148,	NHP2,	1	.
CG6463-RA	AGCCCAAGGTTTAGATTCACACTTAGTACTAATTAATCTACAGCAAATCGAAATGAGAAGAGAGCAATA	69	-	chr3L	10686359	10686428	10686359..10686428	CG6463-RA,	FBgn0047038,	CG6463,	1	.
CG5327-RA	CGTCCATCCAACTTATCAATAGCAGATTTTACCAATACCCTCGGCTATATAATACACGTATTTCTCAGT	69	+	chr2R	14505631	14505700	14505631..14505700	CG5327-RA,	FBgn0034363,	CG5327,	1	.
CG11300-RA	CATGTTGGCTACGAATTTGAAATAAAATTCCAGACAGAAATGCAATAAATCTAAAAAAAACATAA	65	+	chr2R	19639955	19640020	19639955..19640020	CG11300-RA,	FBgn0034901,	CG11300,	1	.
CG7889-RA	GTGAACCCTGCGTCCAGCTAATGCGCGAGAATATCAGCCTGAATTTTCCAGACACGCCCAAGGAG	65	+	chrX	19138390	19138455	19138390..19138455	CG7889-RA,	FBgn0031003,	CG7889,	1	.
CG17906-RA	ACGGAGAGCGGAATTTAATCTGGGTTCTATACCGATGGCTTCTGGCTGCTTTCTTTGCCGCTGGAGTCA	69	+	chr2L	8994577	8994646	8994577..8994646	CG17906-RA,	FBgn0032086,	CG17906,	1	.
CG31606-RB	ACTTGGAGCGAGTAGTGCGATTCCCGGATAACTCTGCTAGGGGGGAACTTTTTGGGCTTCTCGAG	65	+	chr2L	8148127	8148192	8148127..8148192	CG31606-RB,	FBgn0051606,	CG31606,	1	.
CG10866-RA	TGGATATTGATTTTCACCTGCTTCGTTGTGTCATCGTTCATTGACTTGGACCACTTTGTGGAGGCTCGT	69	-	chr3L	3937467	3937536	3937467..3937536	CG10866-RA,	FBgn0035475,	CG10866,	1	.
CG1077-RA	TCGCTTCAGGAAACCAGTACGTAGGTTCACAACCACAAGGACTCCAACCACACCATACAAGCCACGTCA	69	+	chr3R	1995020	1995089	1995020..1995089	CG1077-RA,	FBgn0037405,	CG1077,	1	.
CG6711-RA	CCCAACTGCTGATCGATAATCCGCCTTTCACACGCGAATCTCGCAGCCGTCTGGATAAACCCAATCTC	68	-	chr3L	9878506	9878574	9878506..9878574	CG6711-RA,	FBgn0011836,	Taf2,	1	.
CG1830-RA	TAAGAGGAAACACAGTAAGCAAGAAACCAAGAAACAAACCAACAAACGAATTAGCAAAAGCTACTACTA	69	+	chrX	11597794	11597863	11597794..11597863	CG1830-RB,CG1830-RD,CG1830-RE,	FBgn0011754,	PhKgamma,	1	.
CG6971-RA	GCAGGCGCATGAGGAAAAGGAAATGCTTCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACT	69	-	chr3R	7718286	7718355	7718286..7718355	CG6971-RA,	FBgn0037962,	CG6971,	1	.
CG11069-RA	TCCCTTGTCCACAGCTCGAGAATCCCTTGATGTACTATCTCTGCCTGTCCACTGTGGATCGTCGCA	66	+	chr3R	20721841	20721907	20721841..20721907	CG11069-RA,	FBgn0039244,	CG11069,	1	.
CG32341-RA	AATCAACCAGATCACGCACTTGAAATAAAACTGTCAAAGATCTGTGGGGAACATCTAGTTCTGGCCGCA	69	+	chr3L	801075	801144	801075..801144				0	no match
CG17280-RA	TTCGTTGTTTGGTAGTGATAGACGTTAATGTAAACTGAACTTTACGCGGAAATACACAGAAAACACA	67	+	chr2R	19436328	19436395	19436328..19436395	CG17280-RA,	FBgn0034877,	levy,	1	.
CG33175-RH	CCAGCATCGCAGTCAAATGTTACACGCCAGCCAAAGACACTCGGAACCACTTAAAGCGGGCTTCG	65	-	chrX	10391764	10391829	10391764..10391829	CG34414-RH,CG34414-RA,CG34414-RG,	FBgn0085443,	spri,	1	.
CG5724-RA	AGGAAGCCACATAAATCCGGACACGGTTGTGAAGATGTTCAATGTATTGTCGAAGCTCAAGCAAAGGGT	69	+	chr3R	8566384	8566453	8566384..8566453	CG5724-RA,	FBgn0038082,	CG5724,	1	.
CG1165-RA	CAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTGTACTGGTGCCAGGCCG	65	+	chr3L	1227956	1228021	1227956..1228021	CG1165-RA,	FBgn0004430,	LysS,	1	.
CG4271-RA	GCGAAAAACTACTCGAGTCCTACGTCGTGACTAGAAAACTGCAAAATGGCGTTACCAAAATCCGTCCCC	69	+	chr2L	2285588	2285657	2285588..2285657	CG4271-RA,	FBgn0031409,	CG4271,	1	.
CG31077-RA	CCACCTCTGTCGACCCATTTGCCAAATGCAGGGATGGTCAGCTCAGGTTAGATCCCAAAAACTGTGC	67	+	chr3R	22827686	22827753	22827686..22827753	CG31077-RB,	FBgn0051077,	CG31077,	1	.
CG17009-RA	CCGTGAAACCGCACAAGATCAACACCGTGAAGCGGGAAGTACTGATGCAGCTGGATGAGAACACACTC	68	-	chr2L	9250369	9250437	9250369..9250437	CG17009-RA,	FBgn0032104,	aust,	1	.
CG4746-RA	GGCTGCCAAATCGTGAGAATTGCATTTGGAATGCCACCAACTGAAGTCGATTGGATTCGGGCTCTTGGT	69	-	chrX	5900106	5900175	5900106..5900175				0	no match
CG2767-RA	GCAGCAGCGAGATCTGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCTACTCCCCGTTG	67	-	chr3R	3832234	3832301	3832234..3832301	CG2767-RA,CG2767-RB,	FBgn0037537,	CG2767,	1	.
CG7038-RA	AGATCTGGGACTAGACGGAAAGCAGAGCGATTTTACTGTCGTCAAGAACATACCGGAGAACAATGCCCG	69	+	chrX	4542312	4542381	4542312..4542381	CG7038-RA,	FBgn0029718,	mRpL30,	1	.
CG31204-RA	GTTTGAGCTGCCCATAGGTCCTGACTTGAAGGATTCCAGGCGCAAGATCCTAAGGATGGCCGATG	65	-	chr3R	27218309	27218374	27218309..27218374	CG31204-RA,	FBgn0051204,	CG31204,	1	.
CG33017-RB	GCGACGTGGAAAGTGATCCGAAAGATCCCAAGTCAACTGTGCCGGAGAAACGAAATCAGGCTGGC	65	+	chr2R	12163600	12163665	12163600..12163665	CG33017-RB,	FBgn0053017,	CG33017,	1	.
CG1228-RB	TTGGCGCATGGTACAGCAAGAGAGCAGTCATCTCCTGGTGATGCTAACGACCGTAATGGAGTCTGGTC	68	+	chr3L	354641	354709	354641..354709	CG1228-RG,CG1228-RH,CG1228-RI,CG1228-RJ,CG1228-RK,	FBgn0261985,	Ptpmeg,	1	.
CG33080-RA	CTGGGCCACATTGTCATCAATGAGTTCTGGCAGGAGAATATTGGCGACTTTACGGTGGACAAGGC	65	-	chrX	5604110	5604175	5604110..5604175	CG33080-RA,CG33080-RB,	FBgn0053080,	CG33080,	1	.
CG32089-RA	GGGCTGCAGTTGCGATTATATTCACGACCTTGGGAGCGTCTTACGGAACAGCAGTTTCCGGTGTC	65	+	chr3L	11468155	11468220	11468155..11468220	CG32089-RA,	FBgn0028668,	Vha16-2,	1	.
CG6923-RA	CATCTTTATGTAAATCCCTCAGACTGAGTTTGTTCTCGGCATGCATCGATACAAGAACAAAGAATGAAA	69	-	chr3R	7570577	7570646	7570577..7570646	CG6923-RA,CG6923-RB,CG6923-RC,	FBgn0037944,	CG6923,	1	.
CG3527-RA	ACTGAACTTGTGCATTTCGAAAAACGTGCGGATTTCTTAAGAATAATTTCGGAATTGTTTTTAACCATA	69	+	chrX	4446021	4446090	4446021..4446090	CG3527-RA,	FBgn0029714,	CG3527,	1	.
CG18472-RA	GGGAGGTGCACCTAAGAAGCCACAAAGTCCTCCTATGACACCAAAGGAAACCTTACTGCGTTTGCCACA	69	+	chr3R	22775160	22775229	22775160..22775229	CG18472-RA,	FBgn0039463,	CG18472,	1	.
CG10680-RA	CGGAGCGAATCCTATAGCTACACATCGGATGGAAGAGGACCTCCCCAAATCGAGCGGGATGTGTTCG	67	+	chr2L	19965173	19965240	19965173..19965240	CG10680-RA,	FBgn0032836,	CG10680,	1	.
CG11237-RA	GGATCCCCGGTATGCAAAGAAGATCGAGTCGATTGTCCGCAAGGCTCCCAAGGGTATCAAGCAGTTG	67	-	chr2R	15375016	15375083	15375016..15375083	CG11237-RA,	FBgn0034452,	Oseg6,	1	.
CG7615-RA	ACTTAGTTTTTTTCAAATTCCAGTGCCTAAGAGCGAAGAGAAATGATCACCTGTTTGAGAAACTGGCCG	69	-	chr3R	25606051	25606120	25606051..25606120	CG7615-RA,	FBgn0039694,	fig,	1	.
CG14598-RA	GGCCAGTGGTTAATACTACGCCAAAACCCGTGGTTAGGATCTCTCAGCCGTCTGTGCTCAAGGTCACT	68	+	chr3R	3266922	3266990	3266922..3266990	CG14598-RA,	FBgn0037503,	CG14598,	1	.
CG5594-RB	GGCGTCCCCAAATTTTGGTGCTTTCGAAGCTCAACGACAACCTCTTGCCAAAATACAGGAAGATATTCT	69	+	chr2R	19809588	19809657	19809588..19809657	CG5594-RA,CG5594-RB,CG5594-RD,CG5594-RC,	FBgn0261794,	kcc,	1	.
CG15046-RA	ATAGTGCGCCTGGTTCAATTTCAAAAGGATCTATCACTTATACGATTGCAGGACCCACTGCGTCTGGGC	69	-	chrX	18382187	18382312	18382187..18382250,18382306..18382312	CG15046-RA,	FBgn0030927,	CG15046,	1	.
CG30011-RC	ATCAACAAGCAGGACAACAACTAAGCGATGTTCTGGCAACGCGTATGCACTGCAGTAGAGACCACCCGA	69	+	chr2R	6024493	6024562	6024493..6024562	CG30011-RA,CG30011-RC,CG30011-RD,	FBgn0050011,	gem,	1	.
CG7602-RA	AGCCACCGTGAGACCAAACAGGCCAACATTCTACCCTCCCTTTTTAAGACCTCCATGTGTCCAGGAGAA	69	+	chr3R	4061080	4061149	4061080..4061149	CG7602-RB,CG7602-RA,	FBgn0037554,	DNApol-iota,	1	.
CG5776-RA	TGGAGGCACTGCAAAATGTCACCATAGTCGCTGCCACCAATCGTCCAGATATGATCGACAAGGCACTG	68	-	chr2L	12702210	12702278	12702210..12702278	CG5776-RA,	FBgn0032450,	CG5776,	1	.
CR31379-RA	AAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAAATCGTGAA	65	.	.	.	.	.	CR31379-RA,CR31539-RA,CR32867-RA,	FBgn0004188,FBgn0004190,FBgn0004189,	snRNA:U6:96Aa,snRNA:U6:96Ac,snRNA:U6:96Ab,	3	.
CR30249-RA	GTGATCGTCTAGTGGTTAGGACCCCACGTTGTGGCCGTGGTAACCCAGGTTCGAATCCTGGTCAC	65	.	.	.	.	.	CR30223-RA,CR30250-RA,CR30252-RA,CR30249-RA,CR30251-RA,	FBgn0050223,FBgn0050250,FBgn0011878,FBgn0050249,FBgn0050251,	tRNA:CR30223,tRNA:CR30250,tRNA:H:48F,tRNA:CR30249,tRNA:CR30251,	5	.
CG10888-RA	GGGCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTGGTGATTTGGGTCT	65	-	chr3R	15907901	15907966	15907901..15907966	CG10888-RA,	FBgn0003249,	Rh3,	1	.
CG17375-RA	CAACACCCGGCCCTTTGACATCCTTCGCGAGCTAGACGAGATGTACGCACTGCTGTTTGAACTGG	65	-	chr2L	6804793	6804858	6804793..6804858	CG17375-RB,	FBgn0031861,	CG17375,	1	.
CG32685-RC	GCCCTACATAGTGGACCTACACTGCGATCTAGAGACGTGCCTTGGTAGAAACTCTCACCAGCGCAG	66	-	chrX	9968033	9968099	9968033..9968099	CG32685-RC,CG32685-RE,	FBgn0052685,	CG32685,	1	.
CG4136-RA	CCAGATGAAACATGTACATCGATGTGTTGTTCTAAGGACAACGATAAACCTACAGGATTCGAAACACAT	69	+	chrX	5506063	5506132	5506063..5506132	CG4136-RA,	FBgn0029775,	Vsx1,	1	.
CG10837-RA	GGGTCTGCAAAACCGGTAGATACAGCAGCAAGGGAGTTGGAGATTGAGCAAAGATTGGCTCTCGCTCGA	69	+	chr2RHet	2903025	2903094	2903025..2903094	CG10837-RE,CG10837-RB,CG10837-RA,	FBgn0020660,	eIF-4B,	1	.
CG6370-RA	AGCTCATGTGCTAATCGAGGCGCTGAAGACTATTAGTGGAGCCGATAAAATTGCTCCCGTTTGTGTGCA	69	-	chr2R	13653319	13653388	13653319..13653388	CG6370-RA,	FBgn0034277,	CG6370,	1	.
CG2930-RB	CATTAGCGCTGACAAAATACCTAAAGTCCTTACTGATAATACGGCTTGGTCTCTGTTCCTCAATCCGCT	69	+	chrX	3771866	3771935	3771866..3771935	CG2930-RA,CG2930-RB,	FBgn0028491,	CG2930,	1	.
CG13566-RA	CCGTCCAAACAGACCAGTCGAAGGAAACAGTGGCCCTCAAGGTGTACAATCTTTCGCAGGAACCGAAGA	69	-	chr2R	19849254	19849323	19849254..19849323	CG13566-RB,	FBgn0034942,	CG13566,	1	.
CG4788-RA	TCCCTTTGCGGAGGAATACTTTAGTTAAGCCAAAAACGCTTGGGTCAACTACTACAGCGACCTACCCTA	69	+	chr2L	11180000	11180069	11180000..11180069	CG4788-RA,	FBgn0032354,	CG4788,	1	.
CG6416-RJ	GCTATAAGAAAACTGTCCAGTACGATCCCAGGAACAGCGAAACCTACAGAGCCATTCAAGAAGAGGGCG	69	+	chr3L	8630537	8630606	8630537..8630606	CG6416-RJ,CG6416-RE,CG6416-RA,CG6416-RF,CG6416-RL,	FBgn0035917,	Zasp66,	1	.
CG17974-RA	ACGACGAGCTGCAGTACTTGTCCATGCTAAATACCCGCACCTGTAAGTTGGACCACGATGATTGCCACA	69	-	chr2R	17237040	17237109	17237040..17237109	CG17974-RA,	FBgn0034624,	CG17974,	1	.
CG18410-RA	TCCAAGCGTGTCCTGTCAGGCACCAAGAACGAGGACAAGATCACGGCCATAAAGGAGGGAGTCCAG	66	-	chr3R	20624176	20624242	20624176..20624242	CG18410-RA,	FBgn0039226,	Ude,	1	.
CG32209-RB	GGACTCCTGCTCGAACATCCTGACCGGTGACCAGTTCTACAACTTCCTGAACCACAACTTCGACCGTCA	69	-	chr3L	19694820	19694889	19694820..19694889	CG32209-RB,	FBgn0260653,	serp,	1	.
CG32822-RA	AACGGTTATGTGAAGAAGCCGAGCATCTATTTATCTCTGTCGGACGCATTGAGAAAAGCTATGAT	65	+	chrX	21391749	21391814	21391749..21391814	CG32822-RA,	FBgn0052822,	CG32822,	1	.
CG14885-RA	GCCACTGGGGAACGTCGATCTTCCCAGGGCTTGAGGTCCATCCTTTTGAAGGGACAGATGTTCTACATC	69	+	chr3R	12300168	12300237	12300168..12300237	CG14885-RB,CG14885-RC,	FBgn0038435,	Gyc-89Da,	1	.
CG2107-RA	GCTGGACTCCAGTGGATACATCGAGAGTCCCAGTGTGATTCTGGGCAGACTAAGGGCTGTGCTTAAGC	68	+	chr3L	2981877	2981945	2981877..2981945	CG2107-RA,	FBgn0035383,	CG2107,	1	.
CG3448-RB	TGTCGAAAAACCAGCGTTCAAAGTGTACAAATGCGAAGGATACGAAACGCTGTACTTGGATGTTCCGCT	69	-	chr3L	9444272	9444341	9444272..9444341	CG3448-RB,	FBgn0035996,	CG3448,	1	.
CG3656-RB	GCCTTCCACTTTCGCATCCTGGAGCCATACGTGGAGATCTTCGACAGGCAGTCACTGCGGCTCGT	65	-	chrX	2055702	2055767	2055702..2055767	CG3656-RB,	FBgn0005670,	Cyp4d1,	1	.
CG7007-RA	TGTGATTGTGGATTCTTTTTTCGCACGGAGCAGTCACCTGTCGGCCAAGAAAATACAATTACGCCTGCA	69	-	chr3R	10729677	10729746	10729677..10729746	CG7007-RA,CG7007-RB,	FBgn0028662,	VhaPPA1-1,	1	.
CG1967-RA	GCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTACTTTGAGTTCCAGGTGTCGGC	68	-	chrX	11746140	11746208	11746140..11746208	CG1967-RA,	FBgn0030341,	p24-1,	1	.
CG11042-RA	TTAAAGATCACGGATTACCTGGAAACCGAAGCCCGCCAGCTGGACAGTTGTTGGAGTGGTTGGTG	65	+	chrX	9047638	9047703	9047638..9047703	,CG8989-RA,CG8989-RC,CG8989-RB	,FBgn0004828	,His3.3B	1	.
CG31033-RB	AGGAAACGTTCGGCTAAACTGAAACGTGACCTAGAAGACGCGGTTCGTGAGCCCAGTTCGTCCAG	65	-	chr3R	25658007	25658072	25658007..25658072	CG31033-RC,CG31033-RA,CG31033-RB,CG31033-RD,CG31033-RE,	FBgn0039705,	CG31033,	1	.
CG6816-RA	GACCGGACACTCCCTTCATGCAGACGCTGAACGGATATGGCATTATCAACAGCACTGGCAAACTGTGG	68	-	chrX	18584991	18585899	18584991..18585020,18585860..18585899	CG6816-RA,CG6816-RB,	FBgn0010383,	Cyp18a1,	1	.
CG13716-RA	GCTGAGAAGGAGAAAACTTCATGTCTCTCGGGTTTCAGTTACCAAAATTCACCTAACCAGCGAACTAA	68	-	chr3L	4634605	4634673	4634605..4634673	CG13716-RA,	FBgn0035563,	CG13716,	1	.
CG13375-RA	TGCCGAGGATAAGCCAAAGCGTGATAAGGTTGGTAGAAACAACGCGGTAGATGATGCCATTGGACCGG	68	.	.	.	.	.	CG13375-RA,CG13375-RB,	FBgn0040370,	CG13375,	1	.
CG40381-RA	GACCCAGTCATGCCCAAGTACTTATCTATCCTACTGCTGTCTGCGGCACTTGTTGGAGCTGCCAAGC	67	.	.	.	.	.				0	no match
CG4294-RA	GCGCAGGAAAAAACTGTAGAAGTTGCCGTCCCAACTACAGCCCCCTATACGGTTAGCATAATGCGGGAA	69	-	chr2R	18488800	18488869	18488800..18488869	CG4294-RB,CG4294-RC,	FBgn0034742,	CG4294,	1	.
CG17765-RA	ATCACTCCACAGTCATATTGCAATCTCCTGGTATCAGAATCAAATTTCAAAAGTATTTGTTAACGCAGT	69	+	chr2R	6369251	6369320	6369251..6369320	CG17765-RA,	FBgn0033529,	CG17765,	1	.
CG11188-RA	ATACGTGGTGCACAACAAGCTCATCAACTTCATGGCGCCCAATGAGAGTAGCGACTGGACGGATG	65	+	chr2L	6719136	6719201	6719136..6719201	CG11188-RA,	FBgn0031851,	CG11188,	1	.
CG32570-RA	CCTGGCGCCCATCATCAACAAGAAATTCTATCTGGTTTCCGCACCCGAGGATCACAGCAACGATGG	66	+	chrX	16629323	16629389	16629323..16629389	CG32570-RA,	FBgn0052570,	TwdlY,	1	.
CG17828-RB	GACATTCGAAAATTGGGATTGAAAACTCAAGATGCCGACTACACCACAGGATCTTGCCCTTGCCC	65	+	chrX	515892	515957	515892..515957	CG17828-RA,CG17828-RB,CG17828-RD,CG17828-RC,	FBgn0016038,	mod(r),mod(r),mod(r),mod(r),	1	.
CG17658-RA	ACAAGCCACTCTGCGAGGTGCTGAGGGATCTGCAGAAGTCCATGAAGATCGATCACCCGTTGAAG	65	+	chr2R	19783032	19783097	19783032..19783097	CG17658-RA,	FBgn0034924,	CG17658,	1	.
CG31148-RA	ACAGGTGGACAGGATTTGGACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCTG	65	+	chr3R	19527194	19527259	19527194..19527259	CG31148-RA,	FBgn0051148,	CG31148,	1	.
CG14302-RA	CCGCAGGCTGAGACCACAAATGCCACGCCAGAAACGTCGACCATCTATCCCATTTACGGATAGTCATCA	69	+	chr3R	14558653	14558722	14558653..14558722	CG14302-RA,	FBgn0038647,	CG14302,	1	.
CG17922-RA	GCGCTGCCGAGACGCAAGATCAAAAGGGCTTAAAGACAGGACGATGTTCGCCAGATTTGCTATCTTCCA	69	-	chr2R	17580390	17580459	17580390..17580459	CG17922-RA,	FBgn0034656,	CG17922,	1	.
CG3567-RA	AATGGCCTTTGGACTAGTAGGGCAGGATAACGTGGAGTTCGCTAAGTGGACGCGCAACTACTGGG	65	-	chr2R	2860709	2860774	2860709..2860774	CG3567-RA,	FBgn0033121,	Cyp6u1,	1	.
CG5339-RA	TGCAGAACCTGGAATTGATTCTGTGCCTCAACGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCG	69	-	chr2R	19784936	19785005	19784936..19785005	CG5339-RA,	FBgn0034925,	CG5339,	1	.
CG17782-RA	CTACTGGGCTTTAAACTCAAGACTCAAAGATAGATACTACGGCTACAAAAGTCAACAGGCAGCAC	65	-	chr3R	20197195	20197391	20197195..20197239,20197370..20197391	CG17782-RA,	FBgn0039195,	CG17782,	1	.
CG18321-RA	TCCTGTGCGTACCGTCAGCAAGAAGTGTAAAGCAAATGGCAATTCCAGTGGAGGAAAACAACACGGCCA	69	+	chr3L	274700	274769	274700..274769	CG18321-RA,	FBgn0029002,	miple2,	1	.
CG13422-RA	GTTCACGCAATGGACGCTGGACTTATCGCAACCGGAACCATCAGCTTAGACCCGGAGATGTTCTGTACT	69	+	chr2R	16414063	16414132	16414063..16414132	CG13422-RA,	FBgn0034511,	CG13422,	1	.
CG5693-RA	AGCTCCGGGAACAGAAGTAGTGGGGAAAAAGGCAAAGCTGCAAAAATGAACCAGGAGTCCTTTGGAGAT	69	+	chr2L	18006981	18007050	18006981..18007050	CG5693-RA,	FBgn0040989,	CG5693,	1	.
CG31295-RA	AAGCCCGCTAATTACAAGTGGACGTAATGTGTGCATTTGCAACGCATTTGCTGAAGTGCGGGCGC	65	+	chr3R	14754941	14755006	14754941..14755006	CG42613-RH,CG42613-RE,CG42613-RG,	FBgn0261262,	CG42613,	1	.
CG9728-RA	AGCCTGGATCCCTATGTGGCAACCTTCCATGATATACTGAGTCCCGGAAAGATCTCGCAGCTCCG	65	-	chr3R	26323335	26323400	26323335..26323400	CG9728-RA,	FBgn0039780,	PH4alphaNE1,	1	.
CG3655-RA	GGACTCCGATCCCAAAATGGAGAACCCAGAACCCGTCCTCTAATCCCTGAGTCTCTGTTGCGCAGAG	67	-	chrX	969325	969392	969325..969392	CG3655-RA,CG3655-RB,	FBgn0040397,	CG3655,	1	.
CG6913-RA	CGCTTCGCCCTATAATCATAGTTTGTCCTAGTGACATTTCTCAGGAAATCCAATATTCAAATAAATGCT	69	-	chr3R	7519256	7519325	7519256..7519325	CG6913-RA,	FBgn0037937,	Fer3,	1	.
CG1848-RC	AGTTATATTGCGAAAGAGATAGCGAAAGACGGATAAAGAGAGAAGGAAGAAACTTGTGCCATGATGTTG	69	-	chrX	12479321	12479390	12479321..12479390	CG1848-RA,CG1848-RC,CG1848-RD,CG1848-RF,	FBgn0041203,	LIMK1,	1	.
CG4202-RA	TTGAAACACCCATTTCATCCAAAGACTCACCGGGGATTAGTCAACTAGCTGTCATATGCGAAACAAACA	69	+	chrX	5212882	5212951	5212882..5212951	CG4202-RA,	FBgn0029755,	Sas10,	1	.
CG32351-RA	CGAACGGTGTTTAAGTTTAATGAGACGATGCCACACGTTCATCGGTATTCTTTTAACGACTGACCAACC	69	+	chr3L	8615018	8615087	8615018..8615087	CG32351-RA,	FBgn0052351,	S-Lap2,	1	.
CG33302-RA	CGACGTCTCTGCCAGAGTCGGACGGATATATACAGTCGTCAGTCTGAAAGTCATCGCAACCTGTG	65	+	chr2L	10054227	10054292	10054227..10054292	CG33302-RA,	FBgn0053302,	Cpr31A,	1	.
CG5281-RA	AGTGTGGTTCCAGAGCAACTAAAAGAGTTCGCGGTTTCTCCCTCGTCTTGTCACATCGTTCTCACCCAA	69	+	chr3R	7262943	7263012	7262943..7263012	CG5281-RA,	FBgn0037902,	CG5281,	1	.
CG17835-RB	TATGGAGTAGTGTGTAAGCTAGCTTTAGAAATTCTGAGCGATTAAGTTGTACAATATTCTAGTCCGCCG	69	+	chr2R	7394463	7394532	7394463..7394532	CG17835-RD,CG17835-RB,	FBgn0001269,	inv,	1	.
CG8021-RA	TTCGTCGGCAACCTGCCATGGACGATAGGTAGCAAGGAACTGCGGACCTACTTCTCAAAGTACGG	65	+	chr3R	4476874	4476939	4476874..4476939	CG8021-RA,	FBgn0037602,	CG8021,	1	.
CG4753-RB	AATATTTGTGTTTATCAGCATTCTTCCTACACGTTCGTTTCTTTATCAGTTGTAACGATCAGAAGCAGC	69	-	chr3L	16374519	16374588	16374519..16374588	CG4753-RB,	FBgn0036622,	CG4753,	1	.
CG10133-RA	GCCAAGCCTCTGAAAGTACGTGTTCACGCGGGAGACATCCTATACCTGCCCAACTACTGGTTCCAC	66	-	chr3L	13442525	13442591	13442525..13442591	CG10133-RA,	FBgn0036366,	CG10133,	1	.
CG11692-RA	CCGGAGCTTAGCCATCCATGGGTCGAATTATGGTGGCACAAAATCCGATGCGTTTTCAACCCAAGCG	67	-	chrX	20509310	20509377	20509310..20509377				0	no match
CG7459-RA	AATTCGTTATGAAATGCGAACATTACCAGGTCTGAGTCCTGACAGCCCACAACTCACATTTGAAGGCCT	69	+	chr3R	4145044	4145113	4145044..4145113	,CG9610-RC	,FBgn0003129	,Poxm	1	.
CG5734-RA	TTGAATGAAGGCGCTAAAATGTGTTGTAAAGAATTGAATGCTCAAGATGAATGGCACGTTTTACCATCA	69	-	chr2L	10205057	10205126	10205057..10205126	CG5734-RA,	FBgn0032191,	CG5734,	1	.
CG6284-RA	GCCGTGGAAACAGTGGGTCAAAAATCCCTGCAACGTGCCTGCAAGTCTTCAATGGATAGCAAAGGTCG	68	-	chr3R	6086938	6087006	6086938..6087006	CG6284-RB,	FBgn0037802,	Sirt6,	1	.
CG17109-RA	GCTCACAGCCTGGATCTTCCCGTGGATGTTATATATCCAGTGGAGAAGAAGCCTGTGGTGATCATCAA	68	+	chr3R	18921633	18921701	18921633..18921701	CG17109-RA,	FBgn0039051,	CG17109,	1	.
CG14424-RA	CCCACCGATCAGATTCCCGAGAACGTTCAGTTCATCCCGACACCCAATGGAATTTCCGGTCACAAGGAT	69	-	chrX	2820534	2820603	2820534..2820603	CG14424-RA,	FBgn0025644,	CG14424,	1	.
CG2979-RA	AGGAAGCAGAACGGTGAACAGGATGATACCAAGACCGGAGACCTGATTGTGATTCAGCTGGGCAATGC	68	-	chrX	9945910	9945978	9945910..9945978	CG2979-RA,	FBgn0005391,	Yp2,	1	.
CG11107-RA	GCCCTGGATGATGACGGAAATCTTACAGACCTGGGTGCCGTTATGTCCGAGTTTCCATTGGATCCGC	67	+	chr2R	3276870	3276937	3276870..3276937	CG11107-RA,	FBgn0033160,	CG11107,	1	.
CG10506-RA	GGAGCGTCCCATTGAGGAGTCACTTCGGCTGTTTGAAGACATGAAGCGTGGAAAGATCGACGAGGG	66	-	chr3R	21090194	21090260	21090194..21090260	CG10506-RA,	FBgn0027090,	Aats-gln,	1	.
CG14996-RB	GCCGCTTTTGGGTTCCACACACTTTTCACGTTTTGAGCTAGATTTGGGTAGAGCCCCTGAATGATATGA	69	-	chr3L	4114806	4114875	4114806..4114875	CG14996-RB,	FBgn0035499,	Chd64,	1	.
CG18608-RA	CCGCAAGAAACGCACCTCATCGGAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCCAT	66	-	chr2R	14858427	14858493	14858427..14858493	CG18608-RA,	FBgn0014269,	prod,	1	.
CG10772-RB	ACTCCGGCGAGAAATCCTATGACGAGAAGAGTCGCAAAGTGGTGGGTGAGATCACGACGAATTCCGG	67	-	chr3R	21181148	21181215	21181148..21181215	CG10772-RB,	FBgn0004509,	Fur1,	1	.
CG31829-RA	TGCTCCAGCTGTCGTTAAAACTGAAACTAGTGCAACCACCTCTGGGCCATCAACCTCAGCTTCAGC	66	-	chr2L	15269461	15269527	15269461..15269527	CG42615-RF,	FBgn0261268,	Cul-3,	1	.
CG10034-RA	ACTTCCACAATCTGGAACTGACGCCCATCAACATGCACTCGAACTCGTACGGTAGTGCTTCGGGTG	66	+	chr2L	19465638	19465704	19465638..19465704	CG10034-RB,	FBgn0000964,	tj,	1	.
CG18416-RA	GGATGGCCAAGACATCCTCAAGGATATGCGGGAATCAAGGGGAGATAGGGTAGGGATCTGTGCTGGA	67	+	chr2R	16091899	16091966	16091899..16091966				0	no match
CG32242-RA	TCTTTCAACAATCGGGAGACAAATGAACTGTATTCCAGCAGTAACAAGGTGCGCGTAAAGCTGCCTGGT	69	-	chr3L	4503076	4503145	4503076..4503145	CG42576-RF,CG42576-RD,	FBgn0261526,	NT1,	1	.
CG15179-RA	CCACCAGCCAGCTGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATCGACCGG	68	+	chr3R	2456138	2456206	2456138..2456206	CG15179-RA,	FBgn0037462,	sunz,	1	.
CG3569-RA	ACTGCGTGCTGGACCACAAGACTATACTGAAATGCTGTGACATGATTCGCCCCATGATATCCCGCACCA	69	-	chr2R	19358367	19358494	19358367..19358405,19358463..19358494	CG3569-RA,	FBgn0034865,	Or59b,	1	.
CG3511-RA	TGCTCCACACCACGAAAGGCGATATCCACATGAGGCTGTTCTTCAAGGAGGTTCCAAAGACGGTTGAGA	69	+	chr2R	20461365	20461434	20461365..20461434	CG3511-RA,	FBgn0035027,	CG3511,	1	.
CG6385-RA	ACGAGCTGAATATGCCTATACCCTTGGAAAGTCCCTCGGTCAGACATACGTGTCCCGACCAGATGGCAA	69	-	chr2R	13641234	13641303	13641234..13641303	CG6385-RA,	FBgn0034276,	CG6385,	1	.
CG31915-RA	CCTTGGACCACGACGTACAACAGCTGGTGAACCTCAAGAGCATTATGGTCAATGAACTCGGCGCA	65	+	chr2L	5529190	5529255	5529190..5529255	CG31915-RA,	FBgn0051915,	CG31915,	1	.
CG11350-RB	CTTCCGCTCCAGCTGTCTCCTACTCTGCTCCCTCTCAGAGCTACTCTGCTCCCGAGTACTACAGC	65	+	chr3L	4484043	4484108	4484043..4484108	CG11350-RB,	FBgn0035552,	CG11350,	1	.
CG17631-RA	CAAAACCTCGCCACGCTACGCCACGCCACACCCCGGAATCAGAACCACAATCGAAACCAGACCAG	65	+	chr3R	11849795	11849860	11849795..11849860				0	no match
CG17549-RA	ACCACGGTCAACGACAACGGAAAGATCACCTCGTATTCGGTGCACTCCTAGAAAGATCGGCGGAGAC	67	-	chr2L	19387153	19387220	19387153..19387220	CG17549-RB,CG17549-RC,CG17549-RA,CG17549-RD,	FBgn0032774,	CG17549,	1	.
CG14894-RA	TGGGCAACATGATACTCAAACCGTTCGGACTGTCTACACAGAATTTCCAAATGCAACAGGATCCCAACA	69	-	chr3R	12267822	12267891	12267822..12267891	CG14894-RA,	FBgn0038428,	CG14894,	1	.
CG41121-RA	TGGAAGAACGAGCAGTCCAAGTGAAGAGTAATCCTGGGAGTGGAGGAGAAGGAAGGAAGGACCTGGC	67	+	chr2L	22707729	22707796	22707729..22707796				0	no match
CG14673-RA	GAGGTCCTGTGCCAATTTCTGGGTTTCTTCGAGGCATTTAGAATGCTACTCTTCACGCTTCTCTGGGGC	69	-	chr3R	1452347	1452416	1452347..1452416	CG14673-RA,	FBgn0037352,	CG14673,	1	.
CG10743-RB	ATCGTCTCACCCTCGAGGACCTCTCCCAATTGCACGTCAGCTCTTGTTTGCACATAGCCTCCTTG	65	+	chr3L	13508225	13508290	13508225..13508290	CG10743-RB,CG10743-RA,	FBgn0036376,	Liprin-beta,	1	.
CG7570-RA	CCACCCAGTTCCCATGGTGGCTTAAATCAGCCCGTTTACTTGTGCAGCCTGATTCCAGTTCCGCC	65	-	chr3L	19978196	19978261	19978196..19978261	CG7570-RA,	FBgn0036924,	hale,	1	.
CG33486-RA	TTATCTGGAGCTTTCGGCTGAGATTGCGAAAAAGCGTGGCTCCTACAACCCCATGAGCGATTGCC	65	+	chr3L	21166574	21166639	21166574..21166639	CG33486-RA,	FBgn0041607,	asparagine-synthetase,	1	.
CG5185-RA	GGGAAAAACTCCAATTGGCAGCTTTAAGTGCAAGTGTCTCCGTCCATTGGTCGTCGGATGGATGCGG	67	+	chr3L	14963041	14963108	14963041..14963108	CG5185-RA,	FBgn0026320,	Tom,	1	.
CG7916-RA	TTGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAATGCTGATCTCCGCATCCACTTGG	65	+	chr2L	13847038	13847103	13847038..13847103	CG7916-RA,	FBgn0028534,	CG7916,	1	.
CG30060-RA	CCACGGCAGTAACATCCATCGAATCGTCTTCCTGGCCTTCAAGCAGTATCTGGAGCTCGATTTCGACGA	69	-	chr2R	9310686	9310755	9310686..9310755	CG30060-RA,	FBgn0050060,	CG30060,	1	.
CG17956-RA	TGGCCATGTCCAAGAAGGGTTCACCAGAACACCAAGACGATAGGATAGAACCTATCCCTATTTCATCCT	69	-	chr3R	9652941	9653010	9652941..9653010	CG17956-RA,	FBgn0002862,	Mst87F,	1	.
CG3388-RA	CTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTATGGTGGATCGGTTGCATCCATGTCCC	65	+	chr2R	20951546	20951611	20951546..20951611	CG3388-RA,	FBgn0001148,	gsb,	1	.
CG3584-RA	TCTGGACCATTTCAACAGATAATAAGTCAAATAATTCCTATTATGTTTAAATTATGATTTCCCGAGTTC	69	-	chr2R	18297074	18297143	18297074..18297143	CG3584-RC,CG3584-RB,	FBgn0022984,	qkr58E-3,	1	.
CG13609-RA	TGCATCCACTTCCCCTCCAATCCCAACTGCAACATCAAGGCTCTAATTCTCATCTACTCGCGCGATCAT	69	+	chr3R	20053262	20053331	20053262..20053331	CG13609-RA,	FBgn0039170,	CG13609,	1	.
CG32551-RA	AATATGCAGGGCCCACAAAGTTCGGAGTATGGTGACGGGACATTCAATGGAACGCCCTTTCTACCCG	67	+	chrX	18333905	18333972	18333905..18333972				0	no match
CG9906-RA	GAAGATGAGGAAGACACATTAAAGAACAAGGAACCTACCCCAAAAAAAAGGAAGCGTAAAGCACT	65	-	chrX	16417344	16417409	16417344..16417409	CG9906-RA,	FBgn0030755,	CG9906,	1	.
CG11505-RC	ATCCGACTGTAAATATATGAAATTCCATGTGTAAATATGAGCAAACCTTTTTGTTAAACCTATAA	65	+	chr3L	3232131	3232196	3232131..3232196	CG11505-RB,CG11505-RD,	FBgn0035424,	CG11505,	1	.
CG14716-RA	GCTGCGCAAAAGAAACATGTCAGCGAGCGAAGAAACAATAGCGGACAGTCAGGTCTCCGAGAATGTGGA	69	+	chr3R	7505576	7505645	7505576..7505645	CG14716-RA,	FBgn0037933,	Ho,	1	.
CG18568-RA	AGTCCATGGACGATTTCTTCAGCCGGGTCCAAAACTCTATGCCCAAATCAGAGTCCGTGTCCACCAT	67	-	chr2R	9859247	9859314	9859247..9859314	CG18568-RA,	FBgn0033888,	CG18568,	1	.
CG5270-RA	GCAAGTATTCCACCCTCCAGCTCAAAAAGACTCTCCCAGCATGTAACCAAATTATATTATTGATTGTAC	69	+	chr3R	7255564	7255633	7255564..7255633	CG5270-RB,	FBgn0037897,	CG5270,	1	.
CG31118-RA	TGACCAACTTGGAGAGCTACAACAACCTGTCCTACTGGTTACGCAACATCCAGGAGAACGCCTCGC	66	-	chr3R	20653136	20653202	20653136..20653202	CG31118-RA,	FBgn0051118,	RabX4,	1	.
CG11154-RB	AAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGGCTTGGTTCGCGGACAGAAGGTTCTC	65	+	chr4	1053712	1053777	1053712..1053777	CG11154-RA,CG11154-RB,	FBgn0010217,	ATPsyn-beta,	1	.
CG7573-RA	CGGGAAATCAGATCGGCATGAGTGTGGTTCCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGC	69	+	chr3L	11304951	11305020	11304951..11305020	CG7573-RB,	FBgn0036153,	CG7573,	1	.
CG6181-RB	CCTGCACCACCTTACGACCTCAGGGACAGCATTAAGCAGCTTTTGATGGCTGGACAAATCAACAAGGC	68	-	chr2L	11096126	11096194	11096126..11096194	CG6181-RA,CG6181-RB,	FBgn0032340,	Ge-1,	1	.
CG32491-RS	CCGCACCTCATCCAACGAGCACAACTTTGTGTATGTGGGATTGCCTCGCATGAAGGGAAAGTGCGTG	67	-	chr3R	17196161	17196228	17196161..17196228	CG32491-RS,	FBgn0002781,	mod(mdg4),	1	.
CG4838-RA	CAAATGGCTCTCAGTGAAGAGAACATTAAGAGATGCGGAAAGTCAAACCAAAAATGCACAGTTGCCTGG	69	+	chr2L	16040217	16040286	16040217..16040286	CG4838-RA,	FBgn0028644,	beat-Ic,	1	.
CG10730-RA	TGCTCCAGTTGGATAGCAAGTCCGTGGATGAGTTCCCGGATAATCTAAGGGCAAGGCAGTGTAAGAGCT	69	-	chr2L	20070617	20070686	20070617..20070686	CG10730-RA,	FBgn0032843,	CG10730,	1	.
CG7691-RA	AAGGTTGGCATCATTACGGTCACGGCTGAGTCCAAGCAAACTCGCACGAAACTCAAGCGGAAAGG	65	+	chr3R	14386450	14386515	14386450..14386515	CG7691-RA,	FBgn0038626,	CG7691,	1	.
CG33277-RA	CAAGACGGTCCTCAGCCAGACATTAGATGTCAACATGGTGGCCGAACCGAAAGCGCATCAGATCG	65	.	.	.	.	.	CG33279-RA,	FBgn0259935,	CG42458,	1	.
CG6999-RA	AGCCGGAAACGCTGTCAAGTTTCAAGACAAAGAAGAACATGCGTAAGGGCTGGGTGGAGTTCATTTCGA	69	.	.	.	.	.	CG32706-RA,CG6999-RA,	FBgn0052706,FBgn0030085,	CG32706,CG6999,	2	.
CG6515-RA	ACTGACCTACGGCATTCCCATGATTGTGATGCTCATATGCTACTCTCTCATGGGTCGTGTCCTGTGGGG	69	-	chr3R	6564918	6564987	6564918..6564987	CG6515-RA,CG6515-RB,	FBgn0004841,	Takr86C,	1	.
CG7516-RA	CCGATGGTGCTCGTTCTTGGATAACCTCACCGAGGAGATCGAATCGGAGGTCGTGGAGAATGTGTACGA	69	-	chr2L	14353786	14353855	14353786..14353855	CG7516-RA,	FBgn0261535,	l(2)34Fd,	1	.
CG10186-RC	ATGGGAGATACCTTTGGGAAACCGTCCTCCATGTGGTAAACTCCACTAATGAATCTCTGCGTCTTGC	67	-	chr2L	19510139	19510206	19510139..19510206	CG10186-RC,	FBgn0032797,	CG10186,	1	.
CG15033-RA	GGACGACACCATCGAAAATCAGGAAAATTGGGTAGACTGGGGAACGCTGAGTATGAAAAAGGTCTCACG	69	+	chrX	7272297	7272366	7272297..7272366	CG15033-RA,	FBgn0029948,	CheA7a,	1	.
CG17780-RA	GCTTCGATGGTCGAGCTTGCATGCTGAAGTCGTTCTGCACTGCCATTAACGATGTGGATAATCCCAAGC	69	-	chr3R	20209911	20209980	20209911..20209980	CG17780-RB,CG17780-RA,CG17780-RC,CG17781-RB,	FBgn0039197,FBgn0039196,	CG17780,CG17781,	2	.
CG31226-RA	GTGGACCAAGTGGATTCTACGATCCGTGCTTTGGACCCTACAACGGACCATTTAACTCCTGGTGCGGA	68	-	chr3R	14677252	14677320	14677252..14677320	CG31226-RA,CG31226-RB,	FBgn0051226,	CG31226,	1	.
CG1787-RA	GCTGTGGTCGCAATTCCATCAGCGGAACCTCAATGCATGGGACGAGATTAACGAGCGTATGTATCCGG	68	+	chrX	8605747	8605815	8605747..8605815	CG1787-RA,	FBgn0041629,	Hexo2,	1	.
CG10586-RA	AACATCGGAACTCTATCCTTGTGCAGTACGGCCTTGACTCCGGGACAGACAATGGACGTATCCGG	65	-	chr3L	20949332	20949397	20949332..20949397	CG10586-RA,	FBgn0037036,	CG10586,	1	.
CG14802-RB	AACTACTGCTCAGTTAATTTAATACCATAGTACACCCAAACTTACAAAATTAGCCAATGGCGATTGTGT	69	+	chrX	1759990	1760059	1759990..1760059	CG14802-RA,CG14802-RC,	FBgn0026873,	MED18,	1	.
CG14518-RA	GGCGGAGAAATAATGCCTTGATTCGGATCGTTTGGGAGCTCTTCAAAGAGTACTCGACGATCAATCACA	69	+	chr3R	24851043	24851112	24851043..24851112	CG14518-RA,	FBgn0039621,	CG14518,	1	.
CG5639-RA	GGAGTCCAGTGTTACGGAGAGAGTACTAGAGCTGGCGAACTCACTGCTGGACTCTCAGCTATCCGTGGA	69	-	chr3R	23413164	23413233	23413164..23413233	CG5639-RA,	FBgn0039527,	CG5639,	1	.
CG31305-RB	GCGGCGAAGAAGTACAACGGCATCTTTGATTGCGTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGG	68	-	chr3R	7386630	7386698	7386630..7386698	CG6783-RC,CG6782-RA,CG6782-RC,CG6782-RD,CG6782-RE,	FBgn0037913,FBgn0037912,	fabp,sea,	2	.
CG33209-RA	CGGAACACCTGGCCTCGTTGTCCCAGAAGCGTCTCTCCCTGCAGATCTCATTCAATAACTCGGTG	65	-	chr3L	15606652	15606717	15606652..15606717	CG42334-RC,CG42334-RD,	FBgn0259236,	comm3,	1	.
CG5886-RA	TCGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGATGACTTCCAGCAGTCGC	68	+	chr3R	21678601	21678669	21678601..21678669	CG5886-RA,	FBgn0039379,	CG5886,	1	.
CG31711-RA	TTGAGTACATGAAGGAAAACCTCTATCAGATGATAAAAGACCGAGATACCCATTTACCCGAACCG	65	+	chr2L	9926917	9926982	9926917..9926982	CG42366-RA,	FBgn0259712,	CG42366,	1	.
CG14127-RA	CGAGACCAAGACACTTGTCCATCAGGATAGCGTAGGATCCAGTTCGGGTGACCAGCATACCGCGAAAA	68	+	chr3L	11875494	11875562	11875494..11875562	CG14127-RA,	FBgn0036219,	CG14127,	1	.
CG32045-RB	CGAGCTGCAGGCAACCTCACCCAAGCTCTTTGAGACGTTGCGCTTTAATGTTTTGGAGGTGCAGGAG	67	-	chr3L	9626106	9626173	9626106..9626173	CG32045-RB,CG32045-RD,CG32045-RC,CG32045-RE,CG32045-RF,CG32045-RG,	FBgn0016081,	fry,	1	.
CG3184-RA	GCTCACGGGTAGCTATGATGAGCAGTTGCGTCTCTTCGACACCAGATCGATGAAGCGATCACTGGCG	67	-	chrX	6581981	6582048	6581981..6582048	CG3184-RA,	FBgn0029892,	CG3184,	1	.
CG15003-RA	GGTTGCACGCTACGATTTGGACAAGGTTTACAGGGAGCTTCTAGTCTCGCTGATTGTGCCCATTGTGCT	69	-	chr3L	4175838	4175907	4175838..4175907	CG15003-RB,	FBgn0035504,	Teh4,	1	.
CG5652-RA	CGGATTAGTCTGGATGCACACACTCTTTCTTAGCTATGTATAACTTGTAAATGTCTTAGCATTTAGTGG	69	+	chrX	15030820	15030889	15030820..15030889	CG33968-RA,	FBgn0260006,	drd,	1	.
CG6429-RA	GGCATTTGGGTTCAAGCCGAGGTCCAAAAACCCATCACGGAACAATGCCTGATCTGTATGTGTGAGGCT	69	+	chr2R	12760628	12760697	12760628..12760697	CG6429-RA,	FBgn0046999,	CG6429,	1	.
CG31473-RA	AAAGCTGTGGTGTACGCTTTGGTCAGCAGGATCACTAGGTCGCTTTGCACAGCACATGAGCAACG	65	+	chr3R	3637637	3637702	3637637..3637702	CG31473-RA,	FBgn0051473,	CG31473,	1	.
CG1434-RA	CAACGGTGGTTCGAAAAACATGCACTGCTACGATGATCTGCGCAAATTTCAAATGGAATGCGGCGCCGA	69	+	chrX	14133144	14133213	14133144..14133213	CG1434-RA,	FBgn0030554,	CG1434,	1	.
CG9873-RA	GCAACTCGTCGTACCATCTGCAGAAATCGAAGTGCTCCCAGTGCGGCTATCCTGCGGCCAAGACC	65	-	chr2R	18987764	18987829	18987764..18987829	CG9873-RA,	FBgn0034822,	RpL37b,	1	.
CG9761-RA	CATTGTCCAGAGGGATCACCCATGAATCCGGTCCAAAAGTGCGAGGTTTGGTAGGAACTGCTCCG	65	-	chr3R	545663	545728	545663..545728	CG9761-RA,CG9761-RB,	FBgn0027570,	Nep2,	1	.
CG4684-RA	CCAAATGGACCGGATCTGGACACCAAGATCGAGGAGTTCCGTGATCAAATCCGTCGATCCGAGACGG	67	+	chr3L	9133342	9133409	9133342..9133409	CG4684-RA,	FBgn0035966,	nwk,	1	.
CG31876-RA	AGTACACGCTGGTCGATGCCGATGGCTATCTGCGCACCGTGGACTACACTTCGGATGCCCACAAC	65	-	chr2L	9932742	9932807	9932742..9932807	CG31876-RA,	FBgn0051876,	Cpr30F,	1	.
CG4780-RA	CCACCTTCGCAGCGACAAAGCTCCAAACTTCGTGTGGATCAGCTGAAATATGACCTGAGACACCTGCAG	69	+	chr3L	5359941	5360010	5359941..5360010	CG4780-RA,	FBgn0260856,	membrin,	1	.
CG1839-RA	CCACCAAGCTGCACGAGTTCATCAACAACGATCTTAGTCAGTTTCTGGCGGACAATTGTGTGGATGGCG	69	-	chrX	14130154	14130223	14130154..14130223	CG1839-RA,	FBgn0030555,	Fbxl4,	1	.
CG1063-RA	ACCCTGGTCAATGTTATTCGATCCGTGACCCGCAATGGTCGCTCTATCGTGTTGACAGCTGTCCTG	66	+	chr3R	1363354	1363420	1363354..1363420	CG1063-RA,CG1063-RB,	FBgn0010051,	Itp-r83A,	1	.
CG3323-RA	TCAATAGTCTGGCCTATGCGGATTCAAAAATCATGGATGCTAACACCGTCGAACAGCTTGAGGTGG	66	-	chrX	5197799	5197865	5197799..5197865	CG3323-RA,	FBgn0029750,	CG3323,	1	.
CG32802-RA	GTGGCATGTGGCTTGAAAATATTCTGAGCACCCTGGAAGCTGGGTATTATTCGATCCTGCGGTGC	65	-	chrX	1882904	1882969	1882904..1882969				0	no match
CG14837-RB	TGGAGTCTCTGGAAACTCCACAGGCCACTCATAAAACCCTCGAACGCTGCGATATTTGCTACAATGAGT	69	-	chr3L	7548981	7549050	7548981..7549050	CG14837-RC,	FBgn0035797,	CG14837,	1	.
CG8003-RA	CGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCACCATCTTCCGGCAAATCGCAACGCAATTTG	65	+	chr3L	10655590	10655655	10655590..10655655	CG8003-RA,	FBgn0036096,	CG8003,	1	.
CG15657-RA	TGATGTCCACATTTCTGTTTGTGCTTGGGATAGCGTGTCACCCGGTAATGGTGATTCCCCTGATGCTG	68	-	chr2R	17035389	17035457	17035389..17035457	CG15657-RA,	FBgn0034595,	CG15657,	1	.
CR32895-RA	CAGCTCGCTTTGATATACAATGAAGAGAACTGTTCCATATCCAACGCAAAACTAAAATGCTGATT	65	+	chr2R	13588502	13588567	13588502..13588567	CR32895-RA,	FBgn0063382,	snoRNA:U29:54Ed,	1	.
CG2916-RA	TCCAAGTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGAACAATGTGAGCATA	69	-	chr2R	3848506	3848575	3848506..3848575	CG2916-RA,CG2916-RB,	FBgn0026361,	Sep5,	1	.
CG7539-RA	TCATCCAAGAAGCGCTCGTTATCGCAATGGCTCTGGTTCGCGTGAGTTGTATGCTGGCCCTTTTG	65	-	chr3R	13437097	13437225	13437097..13437112,13437175..13437225	CG7539-RA,	FBgn0004554,	Edg91,	1	.
CG3104-RA	ACCAGCAAAAGTACACCTCCATCTGTGATTATCTCCAGGAACGCATACGGACTATGGTGGCGCGC	65	-	chr2L	2849791	2849856	2849791..2849856	CG3104-RA,CG3104-RB,	FBgn0031473,	CG3104,	1	.
CG3619-RA	AGCTCTCTCATCCAATTTTGTACATAAAGTTCTCCGATATAAGCTTTTACAGCCTATAGCCACACACAC	69	-	chr3R	15128744	15128813	15128744..15128813	CG3619-RA,	FBgn0000463,	Dl,	1	.
CG5381-RA	CCAGCCTAATCCCTGCACTTCCAGTACTCCCGAGTGCAACGCTAGCATTCACATAAAGCAGTCTTCCGA	69	-	chr2L	10318603	10318672	10318603..10318672	CG5381-RA,	FBgn0032218,	CG5381,	1	.
CG8945-RC	TCCTGAATCCGGACGGATATGCGTACAGCCACGAGTACGATCGTTTCTGGAAGAAGTCGCGATCTCAGC	69	-	chrX	16975230	16975299	16975230..16975299	CG8945-RC,	FBgn0030815,	CG8945,	1	.
CG8799-RA	GGTCCTTCCCGTGGTTCTGGTGGATGTGATGCAGATTGCGCTTTGGCTAGCCGGAATAATCATCGTTAT	69	+	chr2R	5281124	5281193	5281124..5281193	CG8799-RB,	FBgn0010549,	l(2)03659,	1	.
CG4381-RA	TCGCCAATGTCTCCAATTTCGATGTTGTGGGATTCGACATTAGCAAATATCCGAATGTGGCCCGATGGT	69	+	chr3R	8199281	8199350	8199281..8199350	CG4381-RA,	FBgn0010039,	GstD3,	1	.
CG9375-RA	ACAAGCAAAAGCCGATAAGCTCACAGCAACTTTCGCACAAACGAGTAAATTCGCTAGCCCCAAACTAGA	69	-	chr3R	5336539	5336608	5336539..5336608	CG9375-RA,	FBgn0003205,	Ras85D,	1	.
CG32655-RA	AGCTACCAGTGCTAGTTCCGTCGTGAAAAAGAGTTCGGAGAAACCTTCTGGCTCTAGGACCTCTCCCAT	69	-	chrX	12129409	12129478	12129409..12129478	CG32655-RA,	FBgn0052655,	CG32655,	1	.
CG8908-RB	CGGAATGTATGAGGCGATACGTATGAGTACCTTCAGCTTGAAGCAGCTACCTTACCTGATCTTCAGCGG	69	+	chr2R	16156195	16156264	16156195..16156264	CG8908-RB,CG8908-RA,	FBgn0034493,	CG8908,	1	.
CG5427-RA	TCCATCTTGGGACAGATCTCATACGCTTTTCTCTACTGCCCGAATACCTTTTCCATGACGCAAGCGGGA	69	-	chr2L	12442757	12442826	12442757..12442826	CG5427-RA,	FBgn0032433,	Oatp33Ea,	1	.
CG6900-RA	GTCGTTGTTCTGGAGAGCCGTGGTCAGGTCCGAAGACCGATTAGGGGATCCAGCTGGCTACATAC	65	+	chrX	18679764	18679829	18679764..18679829				0	no match
CG4349-RA	GCATGCTGGTGCGTCAGAACTTCGCCAAAAGTTGCGAGAAGAAGCTAAACGATCAGATCAACATGGAGT	69	-	chrX	13002023	13002092	13002023..13002092	CG4349-RA,	FBgn0030449,	Fer3HCH,	1	.
CG30271-RC	GGACGTGGGAAAACCCGAGGAGTCTGCTACTGAGAGTGAGCTTGAAGGAAACAAAAAGACTGAAGTGGA	69	+	chr2R	18708805	18708874	18708805..18708874	CG30271-RD,CG30271-RB,CG30271-RE,	FBgn0050271,	CG30271,	1	.
CG9512-RA	TTAGGGCCTTGAACATCTACAAGAACTTGCCGAATACCAAAGCCTTCAGTGAGAGGGAGGCCGCACTCC	69	-	chrX	14796391	14796460	14796391..14796460	CG9512-RA,	FBgn0030593,	CG9512,	1	.
CG30343-RA	GTATTCGCTTGACTTCCAGCTGGAACTCAATGACTTCACAACTGTAAGCCCCGATGATTTGACCGCCGC	69	+	chr2R	5139711	5139780	5139711..5139780	CG30343-RA,	FBgn0050343,	CG30343,	1	.
CG12410-RA	GCGATCAGGATGCCATTCAAGGATTCAAGAAACAGAACAAAACAGAAGCCCACATCTAACAAATTTAGC	69	+	chrX	5586612	5586681	5586612..5586681	CG12410-RA,	FBgn0000394,	cv,	1	.
CG18042-RA	CGGAAAGGGTCAATTAGACGACATTTCTTCAAGAGTCAATTCAAATTCAAGTGCAGAAAGATCCCACAC	69	-	chr2L	8526720	8526789	8526720..8526789	CG34441-RA,CG34441-RB,CG18042-RA,CG34440-RB,	FBgn0085470,FBgn0250903,	CG34441,lmg,	2	.
CG12298-RA	AGATCGTGGGCAACAAAGGCCATGTGTTCATCAAGGGTCTGACCAGTGTTTTCGTGACGAGCAGC	65	-	chr2R	13634444	13634509	13634444..13634509	CG12298-RA,	FBgn0003545,	sub,	1	.
CG3259-RA	CCAGCCAAACGATCAGATCAAAATGTCGGGCATAAATGTAAAGCTTGAAACCTTTGGCGACTTGGACGA	69	+	chr3R	10129543	10129612	10129543..10129612	CG3259-RA,	FBgn0038221,	CG3259,	1	.
CG12265-RA	GAAAAGCTGGAGGTCTTTCGCAAGCTGAACCTCCTGGAACAGCATCGCGTGGAGAGCTACAAGAG	65	+	chr3R	12975537	12975602	12975537..12975602	CG12265-RA,	FBgn0259784,	Det,	1	.
CG8014-RA	CCGTGCAGCTCTTTGAGTCTATACACGAGCATCCGGAACTGATTTGGAACGATACCACGCGGTCGAATG	69	-	chr2R	5056828	5056897	5056828..5056897	CG8014-RA,	FBgn0015477,	Rme-8,	1	.
CG10617-RA	AGAACGCACTCGAATACACGAATAGTACTTTCCTAGTCGCACCTGCATTTTGACCAACCAACCAATCGA	69	+	chrX	13261491	13261560	13261491..13261560	CG10617-RA,	FBgn0261085,	Syt12,	1	.
CG13010-RA	GCCGCTCCTGGTGGGGATACTTTGGCATGAGCAAGAACAAGAAGTCCAGCATTGAGTCGCTCTAG	65	-	chrX	16572471	16572536	16572471..16572536	CG13010-RA,	FBgn0030770,	CG13010,	1	.
CG12396-RA	AGCCAGCTTAAGCCGAAGAATGACCAGTCCAAGCCCAAGATAGAGGATCAACCGACCTTGAAGGCAGAA	69	-	chr2L	13364531	13364600	13364531..13364600	CG12396-RA,	FBgn0022069,	Nnp-1,	1	.
CG4434-RA	CGCCCGATGTGAACACTGGTCCGCGTGAGATGAGCTGGATTGTTGATCAGTACCAGAAGACATTTGGCT	69	-	chr3R	19115090	19115159	19115090..19115159	CG4434-RA,	FBgn0039071,	CG4434,	1	.
CG8891-RA	CCCGCGCACCATTGTGTCAAAGAAGATTGATCTTCCGGAATTGCAAGGCGACATCGACGAGATTGCCAT	69	-	chr2L	4979063	4979191	4979063..4979085,4979144..4979191	CG8891-RA,	FBgn0031663,	CG8891,	1	.
CG7907-RA	TCTCCGCCACCTGAAGCGTGTCCAACAAAAGATCGAAGTCGTGGATGTCGATGATCCAAGTGCATGC	67	+	chr3R	17231911	17231978	17231911..17231978	CG7907-RB,CG7907-RC,	FBgn0038887,	CG7907,	1	.
CG13838-RA	AACACCGAAAATCATGATTTAGGGTGAAAAAAATTTAAATTTAAATCGAAAGTTGTTTTCCCAGCCCTT	69	+	chr3R	18867976	18868045	18867976..18868045	CG13838-RA,	FBgn0039041,	CG13838,	1	.
CG18815-RA	AGCCCGTTGCATTCCAACTATTCACGCAATATGGAGCGCAGTAAGAGAGTCACACTGAGAGTTATACGA	69	+	chr3L	11622755	11622824	11622755..11622824	CG18815-RA,CG18815-RB,CG18815-RC,	FBgn0042138,	CG18815,	1	.
CG10640-RA	ACTGGAAACGCGTTAGCACACTTTTACGGTATTTTAGCACTTAGCATTAACCACAATGGCGAATACATC	69	-	chr3L	5359242	5359311	5359242..5359311	CG10640-RA,	FBgn0035601,	Uev1A,	1	.
CG18266-RA	GAGGAGGCCAACGATGCATTGCTAAATGGCAGAATGAGCTTCACAGACGAGAAGGCGAAAGTTGAGGAT	69	+	chr2L	5597244	5597313	5597244..5597313	CG18266-RA,	FBgn0031724,	CG18266,	1	.
CG5033-RA	CCTGCTGCAAAACCCTTTGATTGTGCCTCTCAAGAAGCTGCAAACACACGAGAAACGCGATGAGTTTGG	69	+	chr2R	13679711	13679780	13679711..13679780	CG5033-RA,CG5033-RB,	FBgn0028744,	CG5033,	1	.
CG6685-RA	AGCGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGCTAACGTAGAGGCTGTTATTGAGTA	69	-	chr3L	9960555	9960624	9960555..9960624	CG6685-RA,	FBgn0036062,	CG6685,	1	.
CG1862-RA	ACGGTGCAGCGATATAGTCCTGGAATGGTTGAAATCACCGCGACCTCTATGAACGGGATGTTTGACCAG	69	+	chr4	597849	597918	597849..597918	CG1862-RA,CG1862-RB,CG1862-RC,CG1862-RD,	FBgn0040324,	Ephrin,	1	.
CG13849-RA	ACTAGCGTGTTTGGCGAAACTCTTAAGCAACAGGTCGAAGATCGCCTCAAGTTCTACGAGTCCGG	65	-	chr3R	18245215	18245280	18245215..18245280	CG13849-RA,	FBgn0038964,	Nop56,	1	.
CG3264-RA	CGTGTCAGCAGTGTCCAGTGTCATTGGTCTCTTCCAGTCCAAGCTAATGAACTTCCACTTGGAGGCTGA	69	-	chr2R	18097162	18097231	18097162..18097231	CG3264-RA,	FBgn0034712,	CG3264,	1	.
CG30186-RA	TGCGGTTCGAATCTCGGCAGTTCTGCTCTCACTGATAACCAGATGGTATCAGCGTTCCAGATTCATTCG	69	-	chr2R	18990939	18991008	18990939..18991008	CG30186-RA,	FBgn0041235,	Gr59c,	1	.
CG31862-RA	ACTCCTTAGGAGGCTTGGCATTTACGATAGCTTCACTGTTCGCGTATTCAAGGCAATCTTCAGCGATGA	69	+	chr2L	12339234	12339303	12339234..12339303	CG31862-RA,	FBgn0051862,	CG31862,	1	.
CG30441-RA	TGTAATATTTCTGAAACGTTTGCCAAAGATGTCGATAAGGAAAAACTACGCGCTATTGGTACTCAAAAT	69	-	chr2R	1239396	1239465	1239396..1239465	CG30441-RB,CG10395-RA	FBgn0050441,FBgn0033019	CG30441,CG10395	2	.
CG6917-RA	CCTTTGAACTGGGACGCAACGTGGGATGTGAATCGGCTGAAGACTCGACCAGCCTGAAGAAATGC	65	+	chr3L	12182712	12182777	12182712..12182777	CG6917-RA,	FBgn0000592,	Est-6,	1	.
CG11190-RA	GGGCATCTCTTTGAGCATTCGTTCAATGCCACACGTCCGAGTTATGTTCTCAGTTTGCACACGGAAGCG	69	-	chrX	8299246	8299315	8299246..8299315	CG11190-RA,	FBgn0030035,	CG11190,	1	.
CG32835-RA	TGAGACCACTTCGCTGCATCTCTTGATTAACAAACCGTGGTGCATATGTGCTTTTGATCAGAGATTAAT	69	-	chr2R	18839370	18839439	18839370..18839439	CG32835-RA,CG32835-RB,	FBgn0052835,	CG32835,	1	.
FLPase	AGTGGCAGCATATAGAACAGCTAAAGGGTAGTGCTGAAGGAAGCATACGATACCCCGCATGGAATGGGA	69	.	.	.	.	.				0	no match
CG3997-RA	GGCTAAGAAGCTGAAGCAGAACAGATCCGTTCCCCAATGGGTTCGCCTACGTACTGGCAACACTATTCG	69	-	chr2R	19949720	19949789	19949720..19949789	CG3997-RA,	FBgn0023170,	RpL39,	1	.
CG12464-RA	GAAGGATGTACGCCCCAAACTTTGAACACAACTGCCTTCACTACTCCCGATTTCATACACCCATCCACC	69	-	chr2R	9496408	9496477	9496408..9496477	CG12464-RA,	FBgn0033861,	CG12464,	1	.
CG10682-RA	AGTGCAAGCAACTCCACTCATCCGAAGACCTACTGCCAACCAACAAACCAATCATCAATCACCACCGTA	69	+	chr3L	12498308	12498377	12498308..12498377	CG10682-RA,	FBgn0027936,	vih,	1	.
CG7301-RA	AGCAGAATGAGATCATGCGGCGCAAACAGGACGAGGTGGTGACGCTGGAAATGCAAATCAGACAG	65	-	chr3R	13733867	13734371	13733867..13733913,13734352..13734371	CG33547-RB,CG33547-RP,CG33547-RC,CG33547-RD,CG33547-RF,CG33547-RG,CG33547-RH,CG33547-RI,CG33547-RJ,CG33547-RK,CG33547-RL,CG33547-RM,CG33547-RN,CG33547-RO,	FBgn0053547,	Rim,	1	.
CG13548-RA	AACCCGCTTTATCATCAAAGGGAAATCAAGCTGTCAGTCAATTTATAGTTATACCCACATCCACG	65	-	chr2R	19063969	19064034	19063969..19064034				0	no match
CG13521-RB	AGAGGCCCAGACACTTTTCCACTAAACCCCGGATCGTGAGTTGAATTGGGAAAAAAGGGGGCTCG	65	-	chr2R	18580636	18580701	18580636..18580701	CG13521-RA,CG13521-RB,	FBgn0005631,	robo,	1	.
CG7442-RA	CATGACCAGCAGTACGTTGTACTCCACCTGTTTCGTGATCGGGATCGAGCTAGTGGGACCCAAGC	65	+	chr3L	21930516	21930581	21930516..21930581	CG7442-RA,	FBgn0037140,	CG7442,	1	.
CG9362-RA	AATGGGCACAACACTGGATTTCTCGAGGATTTCAGGGTCTCGAAAAGGTTCTTTCCCATTCGGCGGGCA	69	-	chr3R	5281572	5281641	5281572..5281641	CG9362-RA,	FBgn0037696,	CG9362,	1	.
CG11988-RA	GGACTTCATCCAACAAAGACACCACAAAAAAGACGTATTAAGCACGCTAAGCTATTTTAATGAAGCCGC	69	-	chr3R	4846595	4846664	4846595..4846664	CG11988-RC,CG11988-RD,CG11988-RA,CG11988-RB,CG11988-RE,	FBgn0002932,	neur,	1	.
CG14294-RA	GTCACCCGTCTGCACATGGAAAGGCTGAGGTCACTCCTCCAAATTACCACTAAGCGACAGGCGAG	65	-	chr3R	14727522	14727587	14727522..14727587	CG14294-RA,	FBgn0038656,	CG14294,	1	.
CR32989-RA	GGAAGGAGAGCAAGTTAGCACTCCCCTAGACAAGGATGGAACACATAAACGGTCGGCTAGGCACAGACA	69	+	chr2L	8389732	8389801	8389732..8389801	CR32989-RA,	FBgn0041717,	snRNA:U6atac:29B,	1	.
CG13379-RA	ACTAGCACTACGATTGTAAACCACTTCCGGGAGTTGATCAAGGAACCGAAGAACCTCGACGAGGC	65	-	chr3L	18674660	18674725	18674660..18674725	CG13379-RB,	FBgn0036804,	Sgf11,	1	.
CG4659-RA	CCCAGGACGGTGTGGATATGTTCAAACGCGAGGGTTTCGAGATGATCATTGTGGACACCTCGGGT	65	+	chr3L	5146459	5146524	5146459..5146524	CG4659-RA,	FBgn0010747,	Srp54k,	1	.
CG10131-RA	GGCGGTGCACATACAGGAGTGTGTTCCCGAAGTTTTGCATCTGAAGAAGAGTCTGTACTCGCAGTTGGA	69	+	chr2R	10517676	10517745	10517676..10517745	CG10131-RA,	FBgn0033949,	CG10131,	1	.
CG14445-RA	CAGCAGTCACTCTCCGTTCTCCCTTCGTTCTCCCTTCTGTGACCCACAGATTGCCATACCGTGTC	65	+	chrX	6132929	6132994	6132929..6132994				0	no match
CG4482-RA	CCCCCAGTGGAGCGTATTCGTGACATGGATCACTGGTGATTGCCATTGGACAAACCATAAAAATCGACT	69	-	chr2L	14976285	14976354	14976285..14976354	CG4482-RA,CG4482-RB,CG4482-RC,CG4482-RD,CG4482-RE,	FBgn0086711,	mol,	1	.
CG3697-RA	TGTGGATATGCGTGAGTTTCGCTCAGATCTGCCCTGTTTGATTCACAAGCGTGGTCTGGAAGTGCT	66	-	chrX	4209608	4209674	4209608..4209674	CG3697-RA,	FBgn0002707,	mei-9,	1	.
CG5494-RA	CCCGCTGGGTTTTGACCGATTTGGATTTTCGATCCAGTCACAGCACACACATCTCTACCTACCTACCTA	69	+	chr3R	16498279	16498348	16498279..16498348	CG5494-RA,	FBgn0038819,	Cpr92F,	1	.
CG10573-RA	GCTGTTGAACCGGAGACCCCTGTTTATGATGGAGGAAAGTACGCCAAGAACACCAATAACGATGCCACC	69	-	chr3L	21070010	21070079	21070010..21070079	CG10573-RA,	FBgn0020294,	ko,	1	.
CG5391-RA	ATGAGTCCCGACTCTGATCTCGGAATGGAGGAATCGCAGTTTTTGAGCCACACTCCAGTGAGGGC	65	-	chr3R	18159112	18159177	18159112..18159177	CG5391-RA,	FBgn0038943,	CG5391,	1	.
CG13426-RA	AGTCTGTGGAACGCATTAAATGCCAGATTAAGGATCTGCTGATCTTAATGGTTCCGTCCAAGGAT	65	-	chr2R	16400409	16400474	16400409..16400474	CG13426-RA,	FBgn0034510,	CG13426,	1	.
CG31929-RA	TGTTCGGTGGACTCCTCGAGGATTCGGAAATACCTTTCATTGTACCGCCGTCTTTTGGAGCTCAAGGGA	69	-	chr2L	1791103	1791172	1791103..1791172	CG31929-RA,	FBgn0045499,	Gr22c,	1	.
CG9191-RA	GGCGTTGCCAACTGTTCGATGCTTCAGGTGCACATGAAGAATCTCAACCAGAAATACGAAAAGGAAACA	69	-	chr3L	1242838	1242907	1242838..1242907	CG9191-RA,	FBgn0004378,	Klp61F,	1	.
CG8421-RE	ACCCCAGCTGGACACGTAATTACTAAACGCACAAATCACCACGTCTGTCGATGACCACCCGACTCCATT	69	+	chr2R	12001962	12002031	12001962..12002031	CG8421-RE,CG8421-RG,CG8421-RI,	FBgn0034075,	Asph,	1	.
CG5133-RA	GCGCCAGGATTTTGAGCAGGACTCAACGGGTAGTGTTTCGCCAGCTTACTATGGAGCAACTCATCCAGT	69	+	chr3L	9037617	9037686	9037617..9037686	CG5133-RA,	FBgn0028789,	Doc1,	1	.
CG6632-RA	CGGCGTAGGCACCTGGTCGCGTCGCTAGCGGCTCTTATACTTGTAAAGTGACAAATAAACAAATT	65	-	chrX	18544750	18544815	18544750..18544815	CG6632-RA,	FBgn0030945,	Ing3,	1	.
CG4685-RA	GCGCAACTCTACTCGGAGGAGGTCTTTGGTCCAGTGGTCTCCATCATACGGTTCCGAGACGAAGAA	66	-	chr3R	21450911	21450977	21450911..21450977	CG4685-RA,CG4685-RB,CG4685-RC,CG4685-RD,CG4685-RE,	FBgn0039349,	Ssadh,	1	.
CG14007-RA	GCAGATTAACTTGGGCCTTCTTATCATTCTCACTCTATTGGGCTGTTTCTATATATTGTTTGTGG	65	-	chr2L	5715945	5716061	5715945..5715954,5716005..5716061				0	no match
CG10692-RB	TTCCATTTGCCGGTGGAAAGATCTGGGAAGAAATGCCGGGTGCTATAGCCCAGAATCAGGGTCTTTCAC	69	+	chr2L	12097145	12097214	12097145..12097214	CG10692-RA,CG10692-RC,	FBgn0028707,	Mt2,	1	.
CG5072-RA	TCGAACATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGCATGTCGCCG	65	+	chr2R	12471715	12471780	12471715..12471780	CG5072-RC,CG5072-RA,CG5072-RB,	FBgn0016131,	Cdk4,	1	.
CG30376-RA	CCCAATTTCGGCCGAAGAATTTGAGTCTTATCATAAATTAGCCGGTTAAATCAGAGAATTTAGGGGAAC	69	-	chr2R	4151812	4151881	4151812..4151881	CG30376-RA,	FBgn0050376,	CG30376,	1	.
CG1908-RA	CCCTTGGCGCCTATAACCCAAACCGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAA	69	+	chrX	11045205	11045274	11045205..11045274	CG1908-RA,CG1908-RB,	FBgn0030274,	CG1908,	1	.
CG9175-RA	GTTATTCGATTTGCATTATTAGTTTGTAAACAGGGTTTAGTTTTCTGCAATAAGCCACAACTCCTCCCC	69	-	chr2L	6097078	6097147	6097078..6097147	CG9175-RA,CG9175-RB,	FBgn0031779,	CG9175,	1	.
CG12765-RA	TCCTGTTTTCAGACGCATTACCAGTGTCTATGGATCATGTGCTACAAGTTTTGGAACCGACAGTCCCAT	69	+	chr2R	9118719	9118788	9118719..9118788	CG12765-RA,	FBgn0033813,	fsd,	1	.
CG5472-RC	TGGAAACAATACCACAACAAACATAACCTCAGACTCTTATGTTTTGCACTTTAATGAGCAAACAAAAAC	69	+	chr2R	19577767	19577836	19577767..19577836	CG5472-RA,	FBgn0262728,	Pal2,	1	.
CG1264-RA	TCCGTAATCAAACGCTAGCAACTAGTGGAATCTAGGAGTCTAGGTGCCATATTCATTCACGTAGGGGCT	69	-	chr3R	2487572	2487641	2487572..2487641	CG1264-RA,CG1264-RB,	FBgn0002522,	lab,	1	.
CG8616-RA	CGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAGAGAGCATCGACGATCCCGATCTGG	68	+	chr3L	7232474	7232542	7232474..7232542	CG8616-RA,	FBgn0261111,	BHD,	1	.
CG11141-RA	CGCGAGGATTGCGGAAGATCCTTGATTTCTGCGTCTGTGGCAAAGAGATCTTCGTGTTGGAGGGCAATC	69	-	chr2R	3349214	3349283	3349214..3349283	CG11141-RB,CG11141-RA,	FBgn0033177,	CG11141,	1	.
CG5841-RA	GTCCCTGCACGAGGATCCTCCGAAATCGTCAGCCAGTCTTGATGAGTGTTTGGTTTGCTCGGATG	65	-	chr3L	16000646	16000711	16000646..16000711	CG5841-RA,	FBgn0036558,	mib1,	1	.
CG8808-RA	AGGTGGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACATGTCTCGCATCAGCA	69	+	chr2R	5319837	5319906	5319837..5319906	CG8808-RA,CG8808-RB,CG8808-RC,	FBgn0017558,	Pdk,	1	.
CG8578-RA	CTTGCGATTAATATATAAAATATAGTTAAATTGAGCACAGATTCAATGGAAAGTATCAGCACCACAGGT	69	+	chrX	15739369	15739438	15739369..15739438	CG8578-RA,	FBgn0030699,	CG8578,	1	.
CG32912-RB	GGACTGCGGTCACTACAAAGAATGATAAGAAGTCCACGGATTAGTCGGGTTTTTTCTCAAATCCACATT	69	+	chr3L	5777625	5777694	5777625..5777694	CG33718-RC,CG33718-RD,CG33717-RB,CG33717-RA,CG33717-RC,CG33717-RD,	FBgn0044419,FBgn0260458,	Pmi,PGRP-LD,	2	.
CG12507-RA	CGCCTTACAAGCTGAACAAGAAGAAAATCAAAAATATTCAGCGGCCTTTAGCGAATAATTCTACCACGT	69	-	chrX	16159429	16159498	16159429..16159498	CG12507-RB,	FBgn0030729,	CG12507,	1	.
CG9244-RB	TGGCCCAGTAAATGGTCCTGGACCTACTTAAGACACCCAGTCAAGAAGCCTGATCCCAACCTTCTTCCT	69	+	chr2L	21172637	21172706	21172637..21172706	CG9244-RB,CG9244-RD,	FBgn0010100,	Acon,	1	.
CG13705-RA	TGAAACTAACAATAAGTCGAGCGTATTAGTCAATTTGAATCCACTATGAACAACCCGAGTACAAACCCG	69	+	chr3L	4898373	4898442	4898373..4898442	CG13705-RA,	FBgn0035582,	CG13705,	1	.
CG18103-RB	TGCCTTGTCTACTCTCCTGACCGAGGGATTTTTGGAACCGAAAAGGATCTCGTTGGGATTGGCTCCTCC	69	+	chr2L	8180580	8180649	8180580..8180649	CG18103-RC,	FBgn0013442,	fos28F,	1	.
CG8029-RA	CCGGTGGCATCATGTGGAAGTCGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACAACGGCA	69	+	chr2R	5096041	5096110	5096041..5096110	CG8029-RB,CG8029-RA,	FBgn0262515,	VhaAC45,	1	.
CG5273-RB	CATTTATGTAGTCTTGTCTCCACTCGTCTAAGGGTGAAGCACTAATCCGGATCACATGATGGCCT	65	+	chrX	653776	653841	653776..653841	CG5273-RB,	FBgn0040382,	CG5273,	1	.
CG4884-RA	GCGCCCACACAAAATGCTCCGGACTTTTCGTCAAATAGCCCGACTAGGAAGATCCCTAAGGACGC	65	-	chr3R	23783769	23783834	23783769..23783834	CG4884-RA,	FBgn0039565,	CG4884,	1	.
CG7769-RA	ACGTTGGTGAGCGAACTACGCCGATCAATGGATGTGTTCTGTACGGAACATGCAACGGAGCCATTGG	67	+	chr3R	8881717	8881784	8881717..8881784	CG7769-RA,	FBgn0260962,	pic,	1	.
CG13674-RA	CTGCCTACACCGCCCCCATTGCCCGTTATGCCGCCACCCCCTTCGCAGCACCCATCGCCGCTCCC	65	-	chr3L	8211598	8211663	8211598..8211663	CG13674-RA,	FBgn0035858,	CG13674,	1	.
CG9232-RA	AGGTTGACATTGGGCTTGTCCCGTGAATCTGAAGTAGTCATAATCCGATCGGAGTGATACGGAGCGCCA	69	-	chr2L	6667702	6667771	6667702..6667771	CG9232-RA,	FBgn0263200,	Galt,	1	.
CG40084-RD	TTCCCCAACAAATATGAATAGGTCTCCCGATTTTGTGTATAACAGTGTCGACGAAGCCATCCAAGACGA	69	-	chr2RHet	3137112	3137181	3137112..3137181	CG42595-RE,CG42595-RF,	FBgn0262124,	uex,	1	.
CG4394-RB	GGCGCATCAAGGATTACTCGAAAAAACTGGAAGAGTCCAAGCAGTACGACACCATCCTCCATAGCGCCA	69	+	chrX	16310663	16310732	16310663..16310732	CG4394-RC,CG4394-RB,CG4394-RA,CG4394-RD,CG4394-RE,	FBgn0030748,	Traf-like,	1	.
CG7424-RA	CAGGCGTCGTTACGACAGGAAACAGCAGGGTTTCGGAGGTCAGACCAAGCCCATCTTCAGGAAGA	65	-	chr2L	8042441	8042506	8042441..8042506	CG7424-RA,	FBgn0031980,	RpL36A,	1	.
CG32574-RA	TGTTGTTCATCAGAATAGTGATAAATAGCCACCAATTTTACTGTACAGTCATGCAATAGTCAAAGGTTT	69	+	chrX	16638288	16638357	16638288..16638357	CG32574-RA,	FBgn0052574,	Twdlalpha,	1	.
CG12586-RA	GGGATGTGAAAAGGCGAGAAGGACATCTCGGAAGCGAAAATGTTGCTCAAAAGCTAAGCATTGGGCCCC	69	+	chr3R	368627	368696	368627..368696	CG12586-RB,	FBgn0037260,	Mur82C,	1	.
CG4105-RA	CCTGCTGGGCTACAACGATCGCATCTTCAAGGATCCCCATCATTTTCGTCCGGAGCGATTTGAGGA	66	-	chr2L	9748318	9748384	9748318..9748384	CG4105-RA,	FBgn0015035,	Cyp4e3,	1	.
CG16733-RA	GCCAGATTCCTGGGCGTTCAAAGTCTCCTCGATGTGAGCACTTTGCAGAAATTGTGCGATCACCTCACA	69	+	chr3R	5078429	5078498	5078429..5078498	CG16733-RA,	FBgn0037665,	CG16733,	1	.
CG30282-RA	CCAGCCATGTGGGTGACTCCTCCTGGTTGGTTAATCATTTGTTTCCTTTTCCCCAGCCTCGAGTGCAAT	69	-	chr2R	17376833	17376902	17376833..17376902				0	no match
CG5907-RC	AGCGATAGTGACGATGATGGGATGGAACGACGAATCAAGGATCAAAGGTCGCCCCACAAGCACGT	65	+	chrX	18095532	18095597	18095532..18095597	CG5907-RA,CG5907-RB,CG5907-RC,	FBgn0083228,	Frq2,	1	.
CG12567-RA	GCCTGGAAAGTGGGACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTATTAAGGAAACAGCCAT	69	-	chr2LHet	21024	21093	21024..21093	CG12567-RA,CG12567-RC,CG12567-RD,CG12567-RE,CG12567-RF,	FBgn0039958,	CG12567,	1	.
CG1647-RA	CCCCAGCACTACAAATGAACCTCATTCCCACACAGTGGAAAATGTCCAGTCTCCTGCAAACGACCTCCA	69	+	chr3R	24649018	24649087	24649018..24649087	CG1647-RA,	FBgn0039602,	CG1647,	1	.
CG18210-RA	CGCATCAAGAGGAACGTTGCCACCCACAAGTCCCACTTTCAGTGTTCCGTAATTGCGTATCCGCGTTTT	69	-	chrX	15302086	15302155	15302086..15302155	CG43395-RF,	FBgn0263257,	cngl,	1	.
CG13749-RA	TCCCTCAGCTGCCGATCTCCAGCGGACATACGACGGACATGATGGGCCTCACGTTTTCGGAACAC	65	+	chr2R	4821043	4821108	4821043..4821108	CG13749-RB,	FBgn0033353,	CG13749,	1	.
CG13231-RA	CCCACCATCCGGTGTCTTCGGTGTCCTATCACCTGCCCACCTACCACTCCATCCACCACTTCTAA	65	+	chr2R	7034243	7034308	7034243..7034308	CG13231-RA,	FBgn0033580,	CG13231,	1	.
CR32078-RA	ACTGGTCTACAAGTGGAGTTAGTTTGGAGTGTGGAATACCTGTGAATACTTCCCGACACTGAGCATCGA	69	+	chr3L	11122089	11122158	11122089..11122158	CG7628-RA,	FBgn0260795,	CG42575,	1	.
CG11258-RA	TCGACCGATATTCTGTTAATATCAAGCCATGGTCTTCCTGAACCTTCCCTTGCTGGTACGGTCCCGTGG	69	-	chr3L	13010821	13010890	13010821..13010890	CG11258-RA,	FBgn0036335,	mRpL20,	1	.
CG1657-RA	GCTTAGGCGGATGTATCTGTAGATTTCTTTATCGCTTTGTTGTAGGCATTACACCAATCTCCCATCCCA	69	+	chrX	11227576	11227645	11227576..11227645	CG1657-RA,	FBgn0030286,	CG1657,	1	.
CG8169-RA	TGGCATTAGACAAACAGGAATCACCGGCAGAACTCAATTCCCAACCGCCTAGTTTCACTCAGCTGTCGG	69	-	chr2R	11256838	11256907	11256838..11256907	CG8169-RA,	FBgn0011660,	Pms2,	1	.
CG18682-RA	CGTATGTGTACAGCGAATGATCTGTCAGTATCTGCAGCAAAACCTATCATCCGGATATGCCAGGGCTCT	69	-	chr3R	25949764	25949833	25949764..25949833	CG18682-RA,	FBgn0040625,	CG18682,	1	.
CG5502-RA	GCCAAGAAGTAAACTTACTTTCCCCCGAGTAGAGCTGACACACTTTTATATTATAATAAACCACAAAAG	69	+	chr3R	23750500	23750569	23750500..23750569	CG5502-RA,	FBgn0003279,	RpL4,	1	.
CG12052-RS	AGCGAATGATGCCAGAATTACCATAACGTTTGGAGACCAACAACACCAGACCTCAAGTACAACCCCTTT	69	-	chr2R	6409546	6409615	6409546..6409615	CG12052-RS,CG12052-RZ,	FBgn0005630,	lola,	1	.
CG12114-RA	CGCCAAAAGATGCTCTCCGACGGCATTAAGGATCTCAGTC