Curation & storage
ENCODE and modENCODE
- ENCODE - ENCODE data coordination centre
- modENCODE - modENCODE project web site
- Fly Genome Browser - Drosophila melanogaster Genome Browser
- Worm Genome Browser - Caenorhabditis elegans Genome Brower
- modMINE - intgrated database for Drosophila melanogaster and Caenorhabditis elegans
Microarray Data Annotation Tools
- ChipInfo - Downloads NetAffx & GO files
- DAVID - Database for Annotation, Visualisation and Integrated Discovery
- DRAGON - Database Referencing of Array Genes Online
- FatiGo - Finds significant associations between Gene Ontology terms
- GeneAnnot - GeneCards array annotation tool
- GFINDer - Genome Function Integrated Discoverer
- GoMiner - GoMiner: interprets microarray data using GO hierarchies
- GoSurfer - GO retrieval & visualisation
- NetAffx - Affymetrix probesets and Annotations
- SOURCE - Online Database Unification Tool (Stanford)
Microarray Data Standardisation
- MIAME - Minimum Information about a microarray experiment
- MGED - Microarray Gene Expression Data Society
Microarray/EST Expression Databases
- ArrayExpress - Public Repository of Microarray Data (EBI)
- Ascidian - Halocynthia roretzi gene expression patterns
- BODYMAP - Human and Mouse Gene Expression Database
- CATMA - Complete Arabidopsis Transcriptome Microarray
- CGAP - The Cancer Genome Anatomy Project
- ChipDB - Whitehead Institute, Cambridge, USA
- EpoDB - University of Pennsylvania, USA
- EPConDB -Endocrine pancreas consortium database
- ExpressDB - Yeast Expression Database, Harvard-Lipper Centre for Computational Genetics, USA
- GEO - Gene Expression Omnibus (NCBI)
- GXD - Mouse Gene Expression Database (The Jackson Laboratory)
- HugeIndex - Human Gene Expression Index
- Interferon - Interferon Stimulated Gene Database
- StemDB - Stem Cell Database
- StroCDB - Stromal Cell Database
- SMD - Stanford Microarray Database
- Steroid - Steroid-Regulated Gene Expression Database
- Tooth - Tooth Development Database
- WormBase - The Biology & Genome of C. elegans
- yMGV - Yeast Microarray Global Viewer
