Curation & storage
Microarray Data Annotation Tools
- ChipInfo - Downloads NetAffx & GO files
- DAVID - Database for Annotation, Visualisation and Integrated Discovery
- DRAGON - Database Referencing of Array Genes Online
- FatiGo - Finds significant associations between Gene Ontology terms
- GeneAnnot - GeneCards array annotation tool
- GFINDer - Genome Function Integrated Discoverer
- GoMiner - GoMiner: interprets microarray data using GO hierarchies
- GOTM - GOTree Machine interprets microarray data using GO hierarchies
- GoSurfer - GO retrieval & visualisation
- MappFinder -
- MatchMiner - Batch navigation among gene and gene product identifiers
- NetAffx - Affymetrix probesets and Annotations
- OntoExpress - Constructs functional profiles
- RESOURCERER - Provides annotation based on the TIGR Gene Indices & performs resource comparisons
- SOURCE - Online Database Unification Tool (Stanford)
Microarray Data Standardisation
- MIAME - Minimum Information about a microarray experiment
- MGED - Microarray Gene Expression Data Society
- MAGEML - Microarray Gene Expression Markup Language package in Bioconductor
Microarray/EST Expression Databases
- ArrayExpress - Public Repository of Microarray Data (EBI)
- Ascidian - Halocynthia roretzi gene expression patterns
- Axeldb - Gene expression in Xenopus
- BODYMAP - Human and Mouse Gene Expression Database
- CATMA - Complete Arabidopsis Transcriptome Microarray
- CGAP - The Cancer Genome Anatomy Project
- ChipDB - Whitehead Institute, Cambridge, USA
- EpoDB - University of Pennsylvania, USA
- EPConDB -Endocrine pancreas consortium database
- ExpressDB - Yeast Expression Database, Harvard-Lipper Centre for Computational Genetics, USA
- Flydb - Drosophila Microarray Project
- GEO - Gene Expression Omnibus (NCBI)
- GNF - Gene Expression Atlas
- GXD - Mouse Gene Expression Database (The Jackson Laboratory)
- HugeIndex - Human Gene Expression Index
- Interferon - Interferon Stimulated Gene Database
- Kidney - Kidney Development Gene Expression Database
- MEPD - A Medaka gene expression pattern database
- Oncogene - Cancer Microarray Database
- Omcomine - Cancer Gene Expression Database
- SCDb - Stem Cell Database
- StroCDB - Stromal Cell Database
- SMD - Stanford Microarray Database
- Steroid - Steroid-Regulated Gene Expression Database
- TOPOMAP - C. elegans topomap Kim et al, 2001
- Tooth - Tooth Development Database
- WormBase - The Biology & Genome of C. elegans
- yMGV - Yeast Microarray Global Viewer
