Probe design
Microarray oligonucleotide probes
- ArrayOligoSelector - Genome-scale probe selection
- OligoArray - Genome-scale probe selection
- Oligodb - Probe selection
- OligoPicker - Probe selection
- OligoWiz - Probe selection
- Oliz - Select 50mer oligo probes
- Picky - Original research paper
- ProbeSelect - Probe selection algorithm
- Promide - Probe Selection and Microarray Design
- ProbeLynx - a tool for updating the association of microarray probes to genes
RT-PCR primers
- RTPrimerDB - Database of RT-PCR primers
General
- Primer3 - Software for primer design
- PrimeGens - Primer design using gene specific fragments
- Melting - Web browser tool for calculating the Nearest Neighbour melting temperature
- Mfold - RNA/DNA secondary structure prediction
