Key to FlyChip003 (FC003) clone set files
| Column | Description |
|---|---|
| SpotID | Unique spot identifier |
| CloneID | BDGP clone identifier, linked to GenBank (http://www.ncbi.nlm.nih.gov/Genbank/) |
| BDGP_gene |
Predicted gene symbol assigned by BDGP on release of DGC version 1, linked to GadFly
(http://www.fruitfly.org/annot/) |
| FlyBase_gene |
Predicted gene symbol assigned by FlyChip using FlyBase (downloaded April 2002, data
is likely to change), linked to GadFly
(http://www.fruitfly.org/annot/) |
| FlyBaseID |
FlyBase identifier, linked to FlyBase
(http://fly.ebi.ac.uk/) |
| barcode_384 | FlyChip 384-well plate barcode |
| fly_set384 | FlyChip microarray format code, linked to array layout |
| fly_plate384 | FlyChip 384-well plate number |
| fly_row384 | FlyChip 384-well plate row |
| fly_col384 | FlyChip 384-well plate column |
| EST5 |
5' EST name, linked to GenBank
(http://www.ncbi.nlm.nih.gov/Genbank/) |
| EST3 |
3' EST name, linked to GenBank
(http://www.ncbi.nlm.nih.gov/Genbank/) |
| cDNA |
cDNA clone name
(http://www.ncbi.nlm.nih.gov/Genbank/) |
| vector | Vector |
| marker | Antibiotic selection |
| size | Insert size |
| pcr_score | FlyChip PCR score for clone |
| not_DGC | '1' indicates the clone is not in the official DGC clone set |
| plate_set384 | FlyChip plate set |
| DGC - official DGC clone | |
| R96 - Repeat PCR of official DGC clone | |
| CONTROL - Control clone | |
| Landmark | Cy3/Cy5 labelled sonicated salmon sperm DNA |
| plate384 | DGC 384-well plate number |
| row384 | DGC 384-well plate row |
| col384 | DGC 384-well plate column |
| GO_terms | Gene Ontology Consortium controlled vocabulary description of the gene products function, linked to EMBL-EBI Quick-GO GO viewer (http://www.ebi.ac.uk/ego/) |
